AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36312

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36312.t1 MTR_2g101880 97.115 520 15 0 1 520 1 520 0.0 1039
MS.gene36312.t1 MTR_2g093500 82.920 363 23 3 158 520 197 520 0.0 587
MS.gene36312.t1 MTR_2g094180 33.546 471 309 3 43 511 58 526 3.72e-90 287
MS.gene36312.t1 MTR_4g059450 34.667 450 287 4 71 517 109 554 1.59e-85 275
MS.gene36312.t1 MTR_3g088220 26.829 451 298 14 55 486 26 463 2.27e-41 155
MS.gene36312.t1 MTR_1g096790 30.952 126 87 0 67 192 31 156 6.59e-14 74.3
MS.gene36312.t1 MTR_1g087520 35.398 113 69 3 67 177 34 144 1.65e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36312.t1 AT3G16110 59.476 496 197 2 26 520 42 534 0.0 630
MS.gene36312.t1 AT1G52260 56.098 533 218 5 1 520 8 537 0.0 614
MS.gene36312.t1 AT5G60640 31.614 446 302 2 67 511 108 551 5.49e-86 277
MS.gene36312.t1 AT5G60640 32.227 422 284 1 67 488 108 527 3.43e-85 273
MS.gene36312.t1 AT3G54960 31.983 469 313 4 46 511 82 547 2.52e-82 267
MS.gene36312.t1 AT3G54960 32.634 429 284 3 46 472 82 507 1.25e-75 248
MS.gene36312.t1 AT1G21750 27.928 444 292 11 58 484 26 458 4.53e-43 160
MS.gene36312.t1 AT1G21750 27.928 444 292 11 58 484 26 458 4.91e-43 160
MS.gene36312.t1 AT5G60640 31.034 261 178 1 67 327 108 366 6.20e-41 155
MS.gene36312.t1 AT5G60640 35.185 162 98 3 356 511 327 487 1.56e-26 113
MS.gene36312.t1 AT1G77510 26.126 444 293 12 61 484 28 456 1.60e-36 142
MS.gene36312.t1 AT1G35620 28.682 129 92 0 64 192 34 162 2.57e-13 72.4

Find 76 sgRNAs with CRISPR-Local

Find 322 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATTCTTTGAAAGATTT+TGG 0.089611 2.2:-1885448 MS.gene36312:CDS
CCATATGCGGTATATCTTTC+AGG 0.169483 2.2:+1882892 None:intergenic
TATGAGTTTGTTCTTGTTCT+TGG 0.207274 2.2:-1885526 MS.gene36312:CDS
CTCACAAATTCTTCATATTC+AGG 0.208421 2.2:+1883033 None:intergenic
ATAACACTTACTTGCAGTTT+TGG 0.236921 2.2:+1880735 None:intergenic
AACGAACTGGGTTTCATTAT+CGG 0.273450 2.2:+1882999 None:intergenic
GACTTTAATGTGTTTGTTGA+TGG 0.295570 2.2:+1880402 None:intergenic
CCAGGGATGATATAGTTATA+TGG 0.298093 2.2:-1883326 MS.gene36312:intron
GGGACTTCTCAACCTTATTC+TGG 0.302350 2.2:-1885325 MS.gene36312:CDS
CATACGGTTCTCACATTATC+AGG 0.308837 2.2:+1881607 None:intergenic
AAGCCCTTCCTGACAATGTT+TGG 0.312127 2.2:-1881960 MS.gene36312:CDS
GAAATCTAGTTTGAAAGAAT+TGG 0.324131 2.2:-1880431 MS.gene36312:CDS
TAGTTATATGGGCAAGAAAA+AGG 0.325886 2.2:-1883314 MS.gene36312:CDS
AATGAGCTCAAAATTTCTAT+TGG 0.339596 2.2:-1881803 MS.gene36312:CDS
AATACAGAGAGAATTGTTAA+TGG 0.344904 2.2:-1885550 MS.gene36312:CDS
TTTGTTCTATAGCTCATCTT+TGG 0.362837 2.2:+1880366 None:intergenic
TTACCAGTAGGCTTGATATC+TGG 0.364195 2.2:+1882940 None:intergenic
TCAGTGAGTTGTGTAACTAA+TGG 0.364943 2.2:+1882426 None:intergenic
GGACCGGTACGCCTGTTATT+CGG 0.368158 2.2:-1883293 MS.gene36312:CDS
ATGAACAATCCTTTGTGCTT+TGG 0.369989 2.2:+1885588 None:intergenic
TCTGTACTTATCCGAATAAC+AGG 0.370638 2.2:+1883282 None:intergenic
TTTCACATTGGATAAAATAA+TGG 0.380230 2.2:-1882472 MS.gene36312:CDS
CCTTACTCACTTCAACGAAC+TGG 0.381222 2.2:+1882986 None:intergenic
GTTCTCACATTATCAGGTAT+TGG 0.390542 2.2:+1881613 None:intergenic
TGGCTAAGGTGGATGGTGAT+AGG 0.395436 2.2:-1885411 MS.gene36312:CDS
CTTCAAGTCCAAACATTGTC+AGG 0.406857 2.2:+1881952 None:intergenic
TGAAAGTGAGTAATAAGAAA+AGG 0.412418 2.2:+1885731 None:intergenic
GCAGTGAAACCGCCAGAATA+AGG 0.416833 2.2:+1885313 None:intergenic
GCTAGTGTTCAAGTTATTGT+TGG 0.429589 2.2:-1881268 MS.gene36312:CDS
CTAGTGTTCAAGTTATTGTT+GGG 0.430931 2.2:-1881267 MS.gene36312:CDS
GTAATAAGAAAAGGGTTAGA+AGG 0.435787 2.2:+1885740 None:intergenic
CCTGAAAGATATACCGCATA+TGG 0.440943 2.2:-1882892 MS.gene36312:intron
AAGGGTTAGAAGGAAATTGA+TGG 0.446480 2.2:+1885750 None:intergenic
ATACAGAGAGAATTGTTAAT+GGG 0.447131 2.2:-1885549 MS.gene36312:CDS
CAGGGATGATATAGTTATAT+GGG 0.451483 2.2:-1883325 MS.gene36312:CDS
GCAGATAATGTTTATATATG+TGG 0.452676 2.2:-1882006 MS.gene36312:intron
TGATATCTGGATAAAGAACT+TGG 0.455272 2.2:+1882953 None:intergenic
TAGGTAGCTGCATTTGATAA+TGG 0.459475 2.2:-1881826 MS.gene36312:CDS
GAAAGTGAGTAATAAGAAAA+GGG 0.465790 2.2:+1885732 None:intergenic
ATAGTGACCTGATGCTTGAC+TGG 0.468872 2.2:+1882375 None:intergenic
GTTCTTGCTACTTCTTGAAG+TGG 0.473690 2.2:+1882115 None:intergenic
AAGCAAGCAAGTAGAGAAGT+TGG 0.475868 2.2:-1880823 MS.gene36312:CDS
TGGACGCTTTGATAAATTTG+AGG 0.477543 2.2:-1883214 MS.gene36312:intron
TCACAAATTCTTCATATTCA+GGG 0.484612 2.2:+1883034 None:intergenic
CGATGAATTAGAGCGAGAAA+AGG 0.490504 2.2:-1885650 MS.gene36312:CDS
CCAGTTCGTTGAAGTGAGTA+AGG 0.492979 2.2:-1882986 MS.gene36312:CDS
CTCAAGCCCAGTCAAGCATC+AGG 0.496175 2.2:-1882382 MS.gene36312:intron
CTTACTCACTTCAACGAACT+GGG 0.500498 2.2:+1882987 None:intergenic
TTGTTCTTGGTTATGCACCT+TGG 0.519190 2.2:-1885513 MS.gene36312:CDS
TTTGAACAGCAAGAAGGATG+TGG 0.523070 2.2:-1881224 MS.gene36312:CDS
TGCTTTGTAAAGTAAAAGTG+TGG 0.524790 2.2:+1880576 None:intergenic
AGCAAATGATAAGACAAATC+CGG 0.525248 2.2:-1880557 MS.gene36312:intron
AGCAAGAACTTTCAAGTCGA+AGG 0.533751 2.2:-1882101 MS.gene36312:intron
ACTTCAATATTGCTTCGTGT+TGG 0.548950 2.2:+1881772 None:intergenic
AAGTCCAAACATTGTCAGGA+AGG 0.556542 2.2:+1881956 None:intergenic
TATCCAGATATCAAGCCTAC+TGG 0.559989 2.2:-1882943 MS.gene36312:CDS
AGTCCAAACATTGTCAGGAA+GGG 0.584516 2.2:+1881957 None:intergenic
AAGTACAGAGAAAGCAGCAG+AGG 0.586670 2.2:-1883268 MS.gene36312:CDS
GATATCTGGATAAAGAACTT+GGG 0.587382 2.2:+1882954 None:intergenic
CAACAAACACATTAAAGTCA+AGG 0.593096 2.2:-1880398 MS.gene36312:CDS
GCTTTGTAAAGTAAAAGTGT+GGG 0.593935 2.2:+1880577 None:intergenic
TATCCGAATAACAGGCGTAC+CGG 0.594808 2.2:+1883290 None:intergenic
TTGTCAGGAAGGGCTTTGCA+AGG 0.600589 2.2:+1881967 None:intergenic
TGCAGATGGAGCTTTCACAT+TGG 0.601683 2.2:-1882484 MS.gene36312:intron
TAAAACAGGTATTCACACCT+TGG 0.615751 2.2:-1880866 MS.gene36312:intron
TGTGAAATCTTCTGAAGCAG+AGG 0.616463 2.2:-1885617 MS.gene36312:CDS
TTAGCAGCTTCAGCAAAATG+AGG 0.626528 2.2:+1885466 None:intergenic
GAGCGAGAAAAGGATCATGA+TGG 0.628062 2.2:-1885640 MS.gene36312:CDS
ACTTCTCAACCTTATTCTGG+CGG 0.638923 2.2:-1885322 MS.gene36312:CDS
ACCTTGGTGTTTCAACTGTG+AGG 0.643924 2.2:-1880850 MS.gene36312:CDS
TAGTGACCTGATGCTTGACT+GGG 0.645214 2.2:+1882376 None:intergenic
AATCACAGACTCACCATATG+CGG 0.657662 2.2:+1882879 None:intergenic
TGAAGAATCAACAAATACTG+TGG 0.674899 2.2:-1881934 MS.gene36312:intron
TCCTCACAGTTGAAACACCA+AGG 0.681229 2.2:+1880849 None:intergenic
ATCCCGAGAAAATTACCAGT+AGG 0.692322 2.2:+1882928 None:intergenic
TCAGCACTTCTTGAACACCA+AGG 0.725037 2.2:+1885496 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCAATATTAATAATGATAA+TGG - chr2.2:1884820-1884839 MS.gene36312:intron 10.0%
!!! AATTTAAAATTTTGATAACA+AGG + chr2.2:1881335-1881354 None:intergenic 10.0%
!!! ATTTAAAATTTTGATAACAA+GGG + chr2.2:1881334-1881353 None:intergenic 10.0%
!! AGTACTTATAGTAAAAAATA+TGG - chr2.2:1881036-1881055 MS.gene36312:intron 15.0%
!! ATCCAATTATAAATAAAACT+TGG + chr2.2:1883788-1883807 None:intergenic 15.0%
!! ATTTATAATTGGATATTCAA+TGG - chr2.2:1883794-1883813 MS.gene36312:intron 15.0%
!!! AACTTATACAAATTATTTCT+TGG - chr2.2:1884274-1884293 MS.gene36312:intron 15.0%
!!! AATTTAAAATTTGGTAACAA+GGG + chr2.2:1882110-1882129 None:intergenic 15.0%
!!! CATTTTATCCATAAAAAAAT+TGG + chr2.2:1885069-1885088 None:intergenic 15.0%
!!! TATTCTTTTATACATATAGT+TGG - chr2.2:1884709-1884728 MS.gene36312:intron 15.0%
!!! TTCCAAGTTTTATTTATAAT+TGG - chr2.2:1883783-1883802 MS.gene36312:intron 15.0%
!! AAAATTATATCACCAAAATC+AGG + chr2.2:1885618-1885637 None:intergenic 20.0%
!! AAATTATATCACCAAAATCA+GGG + chr2.2:1885617-1885636 None:intergenic 20.0%
!! AACTAATATATGACAGAATT+TGG + chr2.2:1885123-1885142 None:intergenic 20.0%
!! AATTACTTTGATCTGTATTT+GGG - chr2.2:1884055-1884074 MS.gene36312:intron 20.0%
!! AATTCTGTCATATATTAGTT+TGG - chr2.2:1885123-1885142 MS.gene36312:intron 20.0%
!! ACAAAATAGTTTCATTATTC+TGG - chr2.2:1883027-1883046 MS.gene36312:CDS 20.0%
!! ACTTATAGTAAAAAATATGG+TGG - chr2.2:1881039-1881058 MS.gene36312:intron 20.0%
!! ATAAATAGTTCAACACTTAT+CGG + chr2.2:1882316-1882335 None:intergenic 20.0%
!! CTAAATAGTTCAACATTTAT+CGG + chr2.2:1882729-1882748 None:intergenic 20.0%
!! GAAACTAATTAATGTTAACT+TGG - chr2.2:1884432-1884451 MS.gene36312:intron 20.0%
!! GATATAGATAGAAAATTATG+TGG - chr2.2:1881243-1881262 MS.gene36312:CDS 20.0%
!! TAATTACTTTGATCTGTATT+TGG - chr2.2:1884054-1884073 MS.gene36312:intron 20.0%
!! TATAAGAGAAACTATTAAGA+AGG - chr2.2:1881180-1881199 MS.gene36312:intron 20.0%
!! TCAAAATTTATGTTTACTGA+AGG - chr2.2:1885493-1885512 MS.gene36312:CDS 20.0%
!! TGAAAGGAAAAAAAAAATCA+TGG + chr2.2:1883568-1883587 None:intergenic 20.0%
!! TGTTCATACTTATTTAAAGA+GGG - chr2.2:1884983-1885002 MS.gene36312:intron 20.0%
!! TTAAATTGAAAGGCTTATAA+AGG + chr2.2:1884652-1884671 None:intergenic 20.0%
!! TTTAATAGCTATTAATCCTA+TGG + chr2.2:1881837-1881856 None:intergenic 20.0%
!! TTTATCAATCTAGATAATTG+TGG - chr2.2:1884250-1884269 MS.gene36312:intron 20.0%
!! TTTCACATTGGATAAAATAA+TGG - chr2.2:1883660-1883679 MS.gene36312:intron 20.0%
!!! ATCAAAATTTTAAATTGCTG+CGG - chr2.2:1881339-1881358 MS.gene36312:intron 20.0%
!!! GAATTTAAAATTTGGTAACA+AGG + chr2.2:1882111-1882130 None:intergenic 20.0%
!!! GATTTAAAACTTTGATAACA+AGG + chr2.2:1882526-1882545 None:intergenic 20.0%
!!! TACATTTGTTATTATTACCA+TGG - chr2.2:1881993-1882012 MS.gene36312:CDS 20.0%
!!! TCTCGTCTTTTTTTATTTAA+TGG - chr2.2:1885433-1885452 MS.gene36312:CDS 20.0%
! AAGGAAAAAAAAAATCATGG+CGG + chr2.2:1883565-1883584 None:intergenic 25.0%
! AATACAGAGAGAATTGTTAA+TGG - chr2.2:1880582-1880601 MS.gene36312:CDS 25.0%
! AATGAGCTCAAAATTTCTAT+TGG - chr2.2:1884329-1884348 MS.gene36312:intron 25.0%
! ATAAAAAAATTGGTGCAAAG+CGG + chr2.2:1885059-1885078 None:intergenic 25.0%
! ATAAATTGCCTTTAGTAACT+TGG - chr2.2:1882339-1882358 MS.gene36312:intron 25.0%
! ATAATTCCTAATCATCCTAA+CGG - chr2.2:1881790-1881809 MS.gene36312:CDS 25.0%
! ATACAGAGAGAATTGTTAAT+GGG - chr2.2:1880583-1880602 MS.gene36312:CDS 25.0%
! ATACTTATTTAAAGAGGGAA+GGG - chr2.2:1884988-1885007 MS.gene36312:intron 25.0%
! ATCGTTTCAAATAACAAGTA+GGG + chr2.2:1882281-1882300 None:intergenic 25.0%
! ATTACTTTGATCTGTATTTG+GGG - chr2.2:1884056-1884075 MS.gene36312:intron 25.0%
! CCTAAAATGTTTATATGTTG+AGG - chr2.2:1882768-1882787 MS.gene36312:intron 25.0%
! CTCAAGTTAATAGAAAAAAC+AGG + chr2.2:1883469-1883488 None:intergenic 25.0%
! GAAAGTGAGTAATAAGAAAA+GGG + chr2.2:1880403-1880422 None:intergenic 25.0%
! GAATAACAGACAATTAACAT+TGG + chr2.2:1883947-1883966 None:intergenic 25.0%
! GCAGATAATGTTTATATATG+TGG - chr2.2:1884126-1884145 MS.gene36312:intron 25.0%
! GTAACTTGGAATGTTTATAT+AGG - chr2.2:1882353-1882372 MS.gene36312:intron 25.0%
! GTGTTCATACTTATTTAAAG+AGG - chr2.2:1884982-1885001 MS.gene36312:intron 25.0%
! GTTTGTATTAAAATATGCCA+GGG - chr2.2:1883075-1883094 MS.gene36312:intron 25.0%
! TAAAAAATATGGTGGTAACT+AGG - chr2.2:1881047-1881066 MS.gene36312:intron 25.0%
! TAAACATTATCTGCATTTGA+AGG + chr2.2:1884120-1884139 None:intergenic 25.0%
! TAAACATTCCAAGTTACTAA+AGG + chr2.2:1882350-1882369 None:intergenic 25.0%
! TAGAAAAAACAGGAATTTCA+AGG + chr2.2:1883459-1883478 None:intergenic 25.0%
! TAGTTTCATTATTCTGGATT+TGG - chr2.2:1883033-1883052 MS.gene36312:CDS 25.0%
! TCACAAATTCTTCATATTCA+GGG + chr2.2:1883101-1883120 None:intergenic 25.0%
! TGAAAGTGAGTAATAAGAAA+AGG + chr2.2:1880404-1880423 None:intergenic 25.0%
! TGGAGTTAAGAAGTTAATTA+GGG + chr2.2:1881894-1881913 None:intergenic 25.0%
! TGTTTGTATTAAAATATGCC+AGG - chr2.2:1883074-1883093 MS.gene36312:intron 25.0%
! TTCTACATTATTTATTCCCA+TGG - chr2.2:1880904-1880923 MS.gene36312:intron 25.0%
! TTGGAGTTAAGAAGTTAATT+AGG + chr2.2:1881895-1881914 None:intergenic 25.0%
!! CCTCAACATATAAACATTTT+AGG + chr2.2:1882771-1882790 None:intergenic 25.0%
!! GAAATCTAGTTTGAAAGAAT+TGG - chr2.2:1885701-1885720 MS.gene36312:CDS 25.0%
!! TCTTAATTGTTGTTGTTATG+CGG - chr2.2:1882190-1882209 MS.gene36312:intron 25.0%
!! TTTACCTTTCCTAATTTTTC+AGG - chr2.2:1885521-1885540 MS.gene36312:CDS 25.0%
!!! GCTAATTCTTTGAAAGATTT+TGG - chr2.2:1880684-1880703 MS.gene36312:intron 25.0%
!!! GTTATCAAAGTTTTAAATCG+TGG - chr2.2:1882527-1882546 MS.gene36312:intron 25.0%
!!! TTGTTCTGAAACTTAATTCA+AGG - chr2.2:1884792-1884811 MS.gene36312:intron 25.0%
!!! TTTTGGAAATTCTCTTGTTT+TGG - chr2.2:1880701-1880720 MS.gene36312:intron 25.0%
!!! TTTTTCTATTAACTTGAGCT+GGG - chr2.2:1883471-1883490 MS.gene36312:intron 25.0%
!!! TTTTTTCTATTAACTTGAGC+TGG - chr2.2:1883470-1883489 MS.gene36312:intron 25.0%
AACAAGAGAATGATTCTAAC+TGG - chr2.2:1881562-1881581 MS.gene36312:intron 30.0%
AATATCTTTCTCGTACTAAC+AGG - chr2.2:1881636-1881655 MS.gene36312:CDS 30.0%
ACATTTCAAGAACATCAGTT+GGG - chr2.2:1884606-1884625 MS.gene36312:intron 30.0%
ACCTCAACATATAAACATTC+AGG + chr2.2:1881477-1881496 None:intergenic 30.0%
ACTAGTAGTAATAGAAACCA+TGG + chr2.2:1880924-1880943 None:intergenic 30.0%
ACTGTTAGGACTTAGAATAA+AGG + chr2.2:1881932-1881951 None:intergenic 30.0%
AGCAAATGATAAGACAAATC+CGG - chr2.2:1885575-1885594 MS.gene36312:CDS 30.0%
AGGAAAAAAAAAATCATGGC+GGG + chr2.2:1883564-1883583 None:intergenic 30.0%
AGTCATTCACCTGAAAAATT+AGG + chr2.2:1885533-1885552 None:intergenic 30.0%
ATTCAAATCTGCTCAGTATT+GGG + chr2.2:1881541-1881560 None:intergenic 30.0%
ATTGAAAGAGAAGATACACA+AGG - chr2.2:1881674-1881693 MS.gene36312:intron 30.0%
CAACAAACACATTAAAGTCA+AGG - chr2.2:1885734-1885753 MS.gene36312:CDS 30.0%
CAGGGATGATATAGTTATAT+GGG - chr2.2:1882807-1882826 MS.gene36312:intron 30.0%
CATACTTATTTAAAGAGGGA+AGG - chr2.2:1884987-1885006 MS.gene36312:intron 30.0%
CATCGTTTCAAATAACAAGT+AGG + chr2.2:1882282-1882301 None:intergenic 30.0%
CTAGTAGTAATAGAAACCAT+GGG + chr2.2:1880923-1880942 None:intergenic 30.0%
CTCACAAATTCTTCATATTC+AGG + chr2.2:1883102-1883121 None:intergenic 30.0%
CTTTCGATATACCAAAAAAC+AGG + chr2.2:1881514-1881533 None:intergenic 30.0%
GATATCTGGATAAAGAACTT+GGG + chr2.2:1883181-1883200 None:intergenic 30.0%
GGAGTTAAGAAGTTAATTAG+GGG + chr2.2:1881893-1881912 None:intergenic 30.0%
GGATAATTGTAGTCAAAATG+TGG - chr2.2:1882573-1882592 MS.gene36312:intron 30.0%
GTAATAAGAAAAGGGTTAGA+AGG + chr2.2:1880395-1880414 None:intergenic 30.0%
TAACAAAAAGCAGCAAAGTA+GGG + chr2.2:1880785-1880804 None:intergenic 30.0%
TAACTAGGCTTAGATGATTT+GGG - chr2.2:1881062-1881081 MS.gene36312:intron 30.0%
TAATCCTATGGCCTATAAAT+AGG + chr2.2:1881825-1881844 None:intergenic 30.0%
TAATTCCTAATCATCCTAAC+GGG - chr2.2:1881791-1881810 MS.gene36312:CDS 30.0%
TACTTATTTAAAGAGGGAAG+GGG - chr2.2:1884989-1885008 MS.gene36312:intron 30.0%
TAGTTATATGGGCAAGAAAA+AGG - chr2.2:1882818-1882837 MS.gene36312:intron 30.0%
TATTCAAATCTGCTCAGTAT+TGG + chr2.2:1881542-1881561 None:intergenic 30.0%
TCATGCAGAAAAATGTCATA+CGG + chr2.2:1884544-1884563 None:intergenic 30.0%
TGAAGAATCAACAAATACTG+TGG - chr2.2:1884198-1884217 MS.gene36312:intron 30.0%
TGATATCTGGATAAAGAACT+TGG + chr2.2:1883182-1883201 None:intergenic 30.0%
TGCTTTGTAAAGTAAAAGTG+TGG + chr2.2:1885559-1885578 None:intergenic 30.0%
TGGTTATTCTTAAGCTAGAA+CGG + chr2.2:1883927-1883946 None:intergenic 30.0%
TTAACAAAAAGCAGCAAAGT+AGG + chr2.2:1880786-1880805 None:intergenic 30.0%
TTAATTGTCTGTTATTCCCT+AGG - chr2.2:1883950-1883969 MS.gene36312:intron 30.0%
TTCACCTGAAAAATTAGGAA+AGG + chr2.2:1885528-1885547 None:intergenic 30.0%
TTGAAGGAAAAATTTAGACC+AGG + chr2.2:1884104-1884123 None:intergenic 30.0%
TTTGGAGAAAAACAAGTGAA+AGG + chr2.2:1883584-1883603 None:intergenic 30.0%
! AAGTATCACACTTTTCTCAT+TGG - chr2.2:1882898-1882917 MS.gene36312:CDS 30.0%
! AGAAATTTTGAACAGCAAGA+AGG - chr2.2:1884902-1884921 MS.gene36312:intron 30.0%
! ATAACACTTACTTGCAGTTT+TGG + chr2.2:1885400-1885419 None:intergenic 30.0%
! ATTAATTAGTTTCCTTCAGC+AGG + chr2.2:1884425-1884444 None:intergenic 30.0%
! CTAGTGTTCAAGTTATTGTT+GGG - chr2.2:1884865-1884884 MS.gene36312:intron 30.0%
! GACTTTAATGTGTTTGTTGA+TGG + chr2.2:1885733-1885752 None:intergenic 30.0%
! GCTTTGTAAAGTAAAAGTGT+GGG + chr2.2:1885558-1885577 None:intergenic 30.0%
! GTTTCTCTTATAGTTTGTCT+TGG + chr2.2:1881172-1881191 None:intergenic 30.0%
! TATGAGTTTGTTCTTGTTCT+TGG - chr2.2:1880606-1880625 MS.gene36312:intron 30.0%
! TATTTGAAACGATGAACTCA+AGG - chr2.2:1882288-1882307 MS.gene36312:intron 30.0%
! TGTCATATATTAGTTTGGAG+TGG - chr2.2:1885128-1885147 MS.gene36312:intron 30.0%
!! GTATTCTAGAGACTTGTTAA+TGG - chr2.2:1882061-1882080 MS.gene36312:intron 30.0%
!!! AAATTCTCTTGTTTTGGCTA+AGG - chr2.2:1880707-1880726 MS.gene36312:intron 30.0%
!!! ACTTTGCTGCTTTTTGTTAA+TGG - chr2.2:1880786-1880805 MS.gene36312:CDS 30.0%
!!! CTTTGCTGCTTTTTGTTAAT+GGG - chr2.2:1880787-1880806 MS.gene36312:CDS 30.0%
!!! GCTTTGCACCAATTTTTTTA+TGG - chr2.2:1885058-1885077 MS.gene36312:intron 30.0%
AACGAACTGGGTTTCATTAT+CGG + chr2.2:1883136-1883155 None:intergenic 35.0%
AAGCAGATAAGCAATATGAC+AGG + chr2.2:1885204-1885223 None:intergenic 35.0%
AAGGATCGAGATTAATGAGT+TGG - chr2.2:1881199-1881218 MS.gene36312:intron 35.0%
AAGGGTTAGAAGGAAATTGA+TGG + chr2.2:1880385-1880404 None:intergenic 35.0%
AATTCAGGACATAAACATCG+AGG + chr2.2:1882234-1882253 None:intergenic 35.0%
ACAAGTAGGGTTTCAAAACA+AGG + chr2.2:1882268-1882287 None:intergenic 35.0%
ACATTGTGTCTTTGATACTG+TGG - chr2.2:1882552-1882571 MS.gene36312:intron 35.0%
ACTAGAACGAATTGAGCATA+TGG + chr2.2:1883288-1883307 None:intergenic 35.0%
ACTTCAATATTGCTTCGTGT+TGG + chr2.2:1884363-1884382 None:intergenic 35.0%
AGAATAAAGGAGAGTTTGTC+AGG + chr2.2:1881919-1881938 None:intergenic 35.0%
AGCAGATAAGCAATATGACA+GGG + chr2.2:1885203-1885222 None:intergenic 35.0%
AGGTCATGGCAAAACTTTAT+TGG - chr2.2:1883622-1883641 MS.gene36312:intron 35.0%
AGTTATGAGAGTAGATCAGA+TGG - chr2.2:1881114-1881133 MS.gene36312:intron 35.0%
ATCAAATGCAGCTACCTATT+TGG + chr2.2:1884304-1884323 None:intergenic 35.0%
ATGAACAATCCTTTGTGCTT+TGG + chr2.2:1880547-1880566 None:intergenic 35.0%
CAAATCCGGTAATTACTCAA+TGG - chr2.2:1885589-1885608 MS.gene36312:CDS 35.0%
CACTATTAAGAATCACAACG+CGG + chr2.2:1882137-1882156 None:intergenic 35.0%
CATCTCATAATGTATTCGAG+AGG - chr2.2:1882951-1882970 MS.gene36312:CDS 35.0%
CCAGGGATGATATAGTTATA+TGG - chr2.2:1882806-1882825 MS.gene36312:intron 35.0%
CCATATAACTATATCATCCC+TGG + chr2.2:1882809-1882828 None:intergenic 35.0%
CGTGAATCATTACGTAAAAC+AGG - chr2.2:1885252-1885271 MS.gene36312:intron 35.0%
CGTTGTGATTCTTAATAGTG+TGG - chr2.2:1882137-1882156 MS.gene36312:CDS 35.0%
GAAATGTCGAACACTATAGT+AGG + chr2.2:1884593-1884612 None:intergenic 35.0%
GACATTTCAAGAACATCAGT+TGG - chr2.2:1884605-1884624 MS.gene36312:intron 35.0%
GAGAGTAATCAAATCAGTAG+AGG - chr2.2:1881136-1881155 MS.gene36312:intron 35.0%
GATGTTTATGTCCTGAATTG+TGG - chr2.2:1882235-1882254 MS.gene36312:intron 35.0%
GCATGTAAAGAGAAGAACTA+TGG - chr2.2:1881084-1881103 MS.gene36312:intron 35.0%
GCCTGAATGTTTATATGTTG+AGG - chr2.2:1881473-1881492 MS.gene36312:intron 35.0%
GTAACTAGGCTTAGATGATT+TGG - chr2.2:1881061-1881080 MS.gene36312:intron 35.0%
GTAGTAGAAACTAGAAACCA+TGG + chr2.2:1882013-1882032 None:intergenic 35.0%
GTTCTCACATTATCAGGTAT+TGG + chr2.2:1884522-1884541 None:intergenic 35.0%
TAAAACAGGTATTCACACCT+TGG - chr2.2:1885266-1885285 MS.gene36312:intron 35.0%
TAGGATGAGAAATGACTAGT+TGG - chr2.2:1881010-1881029 MS.gene36312:intron 35.0%
TAGGTAGCTGCATTTGATAA+TGG - chr2.2:1884306-1884325 MS.gene36312:intron 35.0%
TAGTCCTATTTATAGGCCAT+AGG - chr2.2:1881818-1881837 MS.gene36312:CDS 35.0%
TCAGTGAGTTGTGTAACTAA+TGG + chr2.2:1883709-1883728 None:intergenic 35.0%
TCTGTACTTATCCGAATAAC+AGG + chr2.2:1882853-1882872 None:intergenic 35.0%
TGGACGCTTTGATAAATTTG+AGG - chr2.2:1882918-1882937 MS.gene36312:CDS 35.0%
TTCGCAAAGACAAAAACCTA+GGG + chr2.2:1883969-1883988 None:intergenic 35.0%
! AACTTTATTGGCTATGCAGA+TGG - chr2.2:1883634-1883653 MS.gene36312:intron 35.0%
! AAGCCTACTGGTAATTTTCT+CGG - chr2.2:1883201-1883220 MS.gene36312:intron 35.0%
! ACTAAAGCTGCTTCTTTTCT+TGG - chr2.2:1880747-1880766 MS.gene36312:CDS 35.0%
! AGGATGAGAAATGACTAGTT+GGG - chr2.2:1881011-1881030 MS.gene36312:intron 35.0%
! ATCATTTGGGATAACAGGTA+GGG + chr2.2:1882694-1882713 None:intergenic 35.0%
! ATGATTTTCCTATGCATCCA+AGG - chr2.2:1884560-1884579 MS.gene36312:intron 35.0%
! ATGTTAACTTGGAATTCTGC+AGG - chr2.2:1884443-1884462 MS.gene36312:intron 35.0%
! CGAGATTAATGAGTTGGATA+TGG - chr2.2:1881205-1881224 MS.gene36312:intron 35.0%
! CGCGGCAAGAATTTAAAATT+TGG + chr2.2:1882119-1882138 None:intergenic 35.0%
! CTAAAGCTGCTTCTTTTCTT+GGG - chr2.2:1880748-1880767 MS.gene36312:CDS 35.0%
! GCTAGTGTTCAAGTTATTGT+TGG - chr2.2:1884864-1884883 MS.gene36312:intron 35.0%
! GCTTCTTTTCTTGGGATTAA+AGG - chr2.2:1880756-1880775 MS.gene36312:CDS 35.0%
! TATTTCTTGGTGTGCCAAAT+AGG - chr2.2:1884287-1884306 MS.gene36312:intron 35.0%
! TGAGTTGGATATGGATAGAT+AGG - chr2.2:1881214-1881233 MS.gene36312:intron 35.0%
! TTATTCTGGATTTGGTACTG+TGG - chr2.2:1883041-1883060 MS.gene36312:intron 35.0%
! TTCTAGAGACATCAAAAACC+TGG - chr2.2:1882628-1882647 MS.gene36312:intron 35.0%
! TTTTGCAGTAAACTTGTGCA+AGG - chr2.2:1884468-1884487 MS.gene36312:intron 35.0%
!! AGGTTTTAACCAAAGCACAA+AGG - chr2.2:1880535-1880554 MS.gene36312:intron 35.0%
!! TATGTTGAGGTGTTTTTGCA+AGG - chr2.2:1881486-1881505 MS.gene36312:intron 35.0%
AAAGGAGAGTTTGTCAGGAT+TGG + chr2.2:1881914-1881933 None:intergenic 40.0%
AACTAGAGAATGCTCTAGTG+AGG + chr2.2:1881755-1881774 None:intergenic 40.0%
AAGCAAGCAAGTAGAGAAGT+TGG - chr2.2:1885309-1885328 MS.gene36312:intron 40.0%
AAGTCCAAACATTGTCAGGA+AGG + chr2.2:1884179-1884198 None:intergenic 40.0%
AATCAAATCAGTAGAGGCAG+AGG - chr2.2:1881142-1881161 MS.gene36312:intron 40.0%
AATCACAGACTCACCATATG+CGG + chr2.2:1883256-1883275 None:intergenic 40.0%
ACTAGAGAATGCTCTAGTGA+GGG + chr2.2:1881754-1881773 None:intergenic 40.0%
ACTTCTCAACCTTATTCTGG+CGG - chr2.2:1880810-1880829 MS.gene36312:CDS 40.0%
AGTCCAAACATTGTCAGGAA+GGG + chr2.2:1884178-1884197 None:intergenic 40.0%
ATATGGGCAAGAAAAAGGAC+CGG - chr2.2:1882823-1882842 MS.gene36312:intron 40.0%
ATCCCGAGAAAATTACCAGT+AGG + chr2.2:1883207-1883226 None:intergenic 40.0%
ATGTAGTTGACCCAACTTAG+TGG - chr2.2:1881276-1881295 MS.gene36312:CDS 40.0%
CAACATTTATCAGTGCCTTG+AGG + chr2.2:1881433-1881452 None:intergenic 40.0%
CAACATTTATCGGTGCATTG+AGG + chr2.2:1882719-1882738 None:intergenic 40.0%
CATACGGTTCTCACATTATC+AGG + chr2.2:1884528-1884547 None:intergenic 40.0%
CCATATGCGGTATATCTTTC+AGG + chr2.2:1883243-1883262 None:intergenic 40.0%
CCTGAAAGATATACCGCATA+TGG - chr2.2:1883240-1883259 MS.gene36312:CDS 40.0%
CGATGAATTAGAGCGAGAAA+AGG - chr2.2:1880482-1880501 MS.gene36312:intron 40.0%
CTAACAGGTGAATGGGAAAT+AGG - chr2.2:1881651-1881670 MS.gene36312:CDS 40.0%
CTTACTCACTTCAACGAACT+GGG + chr2.2:1883148-1883167 None:intergenic 40.0%
CTTCAAGTCCAAACATTGTC+AGG + chr2.2:1884183-1884202 None:intergenic 40.0%
GACATGAGGTTCACATGATT+GGG - chr2.2:1882983-1883002 MS.gene36312:CDS 40.0%
GGAGAATTGCAGTCAAAATG+TGG - chr2.2:1882158-1882177 MS.gene36312:CDS 40.0%
GGTGCATCATAGAAACTGTT+AGG + chr2.2:1881946-1881965 None:intergenic 40.0%
GTGCATTGAGGTCATCATTT+GGG + chr2.2:1882707-1882726 None:intergenic 40.0%
GTTCGCAAAGACAAAAACCT+AGG + chr2.2:1883970-1883989 None:intergenic 40.0%
TAGACCAGGAAATTGCCTAA+CGG + chr2.2:1884090-1884109 None:intergenic 40.0%
TATCCAGATATCAAGCCTAC+TGG - chr2.2:1883189-1883208 MS.gene36312:intron 40.0%
TATGTCCTGAATTGTGGTTG+CGG - chr2.2:1882241-1882260 MS.gene36312:intron 40.0%
TCTCGTACTAACAGGTGAAT+GGG - chr2.2:1881644-1881663 MS.gene36312:CDS 40.0%
TGTAGTTGACCCAACTTAGT+GGG - chr2.2:1881277-1881296 MS.gene36312:CDS 40.0%
TTACCAGTAGGCTTGATATC+TGG + chr2.2:1883195-1883214 None:intergenic 40.0%
TTAGCAGCTTCAGCAAAATG+AGG + chr2.2:1880669-1880688 None:intergenic 40.0%
TTCTCGTACTAACAGGTGAA+TGG - chr2.2:1881643-1881662 MS.gene36312:CDS 40.0%
TTCTGCTACTAGTATGTGCT+TGG - chr2.2:1882443-1882462 MS.gene36312:CDS 40.0%
TTCTTGAATTGTGGACCTCA+AGG - chr2.2:1881415-1881434 MS.gene36312:intron 40.0%
TTGCTTATCTGCTTATGCCT+TGG - chr2.2:1885210-1885229 MS.gene36312:intron 40.0%
TTGTTCTTGGTTATGCACCT+TGG - chr2.2:1880619-1880638 MS.gene36312:intron 40.0%
TTTGAACAGCAAGAAGGATG+TGG - chr2.2:1884908-1884927 MS.gene36312:intron 40.0%
! AAGCCTTATCCCACTAAGTT+GGG + chr2.2:1881289-1881308 None:intergenic 40.0%
! ACTAAGTTGGGTCAACTACA+TGG + chr2.2:1881277-1881296 None:intergenic 40.0%
! AGCAAGAACTTTCAAGTCGA+AGG - chr2.2:1884031-1884050 MS.gene36312:intron 40.0%
! AGCCTACTGGTAATTTTCTC+GGG - chr2.2:1883202-1883221 MS.gene36312:intron 40.0%
! AGGTCATCATTTGGGATAAC+AGG + chr2.2:1882699-1882718 None:intergenic 40.0%
! CATCATTTGGGATAACAGGT+AGG + chr2.2:1882695-1882714 None:intergenic 40.0%
! GGATGAGAAATGACTAGTTG+GGG - chr2.2:1881012-1881031 MS.gene36312:intron 40.0%
! GGGAGGTTAGTCCTATTTAT+AGG - chr2.2:1881811-1881830 MS.gene36312:CDS 40.0%
! GTTCTTGCTACTTCTTGAAG+TGG + chr2.2:1884020-1884039 None:intergenic 40.0%
! TATCAACAGCAAAGCATCCA+GGG + chr2.2:1883875-1883894 None:intergenic 40.0%
! TGATGTCGCTTCTTGAATTG+TGG - chr2.2:1881406-1881425 MS.gene36312:intron 40.0%
! TGGCGGGCATAAACAAAATT+TGG + chr2.2:1883548-1883567 None:intergenic 40.0%
! TTATCAACAGCAAAGCATCC+AGG + chr2.2:1883876-1883895 None:intergenic 40.0%
!! AGGAGTTTTGTGATTGTTCC+AGG - chr2.2:1882788-1882807 MS.gene36312:intron 40.0%
!! GGAGTTTTGTGATTGTTCCA+GGG - chr2.2:1882789-1882808 MS.gene36312:intron 40.0%
!! TACTAGTATGTGCTTGGTGT+TGG - chr2.2:1882449-1882468 MS.gene36312:CDS 40.0%
!! TGTGAAATCTTCTGAAGCAG+AGG - chr2.2:1880515-1880534 MS.gene36312:intron 40.0%
!!! CAAGAAGGATGTGGTTTTAG+AGG - chr2.2:1884917-1884936 MS.gene36312:intron 40.0%
!!! CACACTTTTTTATGCGTCCA+AGG - chr2.2:1882387-1882406 MS.gene36312:CDS 40.0%
!!! CCTTGGTTGATTTTAACTCG+CGG - chr2.2:1885227-1885246 MS.gene36312:intron 40.0%
!!! TTCTCTTGTTTTGGCTAAGG+TGG - chr2.2:1880710-1880729 MS.gene36312:intron 40.0%
!!! TTTGCAAGGAGCCTGTTTTT+TGG - chr2.2:1881500-1881519 MS.gene36312:intron 40.0%
AACCTCCCGTTAGGATGATT+AGG + chr2.2:1881799-1881818 None:intergenic 45.0%
AAGCCCTTCCTGACAATGTT+TGG - chr2.2:1884172-1884191 MS.gene36312:intron 45.0%
AAGTACAGAGAAAGCAGCAG+AGG - chr2.2:1882864-1882883 MS.gene36312:intron 45.0%
AATAGGACTAACCTCCCGTT+AGG + chr2.2:1881808-1881827 None:intergenic 45.0%
AGAAGACAACCTTGCACTCA+AGG - chr2.2:1881707-1881726 MS.gene36312:intron 45.0%
AGCGTTTCGTTATAGAAGCG+AGG + chr2.2:1885655-1885674 None:intergenic 45.0%
AGTATGTGTGTGCTCAGTGT+TGG - chr2.2:1882034-1882053 MS.gene36312:intron 45.0%
AGTCGCCAAAGATGAGCTAT+AGG - chr2.2:1885761-1885780 MS.gene36312:CDS 45.0%
ATAGTGACCTGATGCTTGAC+TGG + chr2.2:1883760-1883779 None:intergenic 45.0%
ATGATGCACCTTGATGTCGA+AGG - chr2.2:1881956-1881975 MS.gene36312:CDS 45.0%
ATGTGAACCTCATGTCGACA+TGG + chr2.2:1882979-1882998 None:intergenic 45.0%
ATTCTTCATATTCAGGGCCC+TGG + chr2.2:1883095-1883114 None:intergenic 45.0%
CAACTTAGTGGGATAAGGCT+TGG - chr2.2:1881288-1881307 MS.gene36312:intron 45.0%
CCAGTTCGTTGAAGTGAGTA+AGG - chr2.2:1883146-1883165 MS.gene36312:intron 45.0%
CCGCGAGTTAAAATCAACCA+AGG + chr2.2:1885230-1885249 None:intergenic 45.0%
CCTTACTCACTTCAACGAAC+TGG + chr2.2:1883149-1883168 None:intergenic 45.0%
CGACATGAGGTTCACATGAT+TGG - chr2.2:1882982-1883001 MS.gene36312:CDS 45.0%
CTAGAGAATGCTCTAGTGAG+GGG + chr2.2:1881753-1881772 None:intergenic 45.0%
CTATAGTAGGACAGACACCT+TGG + chr2.2:1884580-1884599 None:intergenic 45.0%
GAAACCGTTAGGCAATTTCC+TGG - chr2.2:1884083-1884102 MS.gene36312:intron 45.0%
GAGCGAGAAAAGGATCATGA+TGG - chr2.2:1880492-1880511 MS.gene36312:intron 45.0%
GGGACTTCTCAACCTTATTC+TGG - chr2.2:1880807-1880826 MS.gene36312:CDS 45.0%
GGTGCATTGAGGTCATCATT+TGG + chr2.2:1882708-1882727 None:intergenic 45.0%
GTTCACATGATTGGGAGTTG+TGG - chr2.2:1882991-1883010 MS.gene36312:CDS 45.0%
TAGTGACCTGATGCTTGACT+GGG + chr2.2:1883759-1883778 None:intergenic 45.0%
TATCCGAATAACAGGCGTAC+CGG + chr2.2:1882845-1882864 None:intergenic 45.0%
TCAGCACTTCTTGAACACCA+AGG + chr2.2:1880639-1880658 None:intergenic 45.0%
TCCTCACAGTTGAAACACCA+AGG + chr2.2:1885286-1885305 None:intergenic 45.0%
TGACCCAACTTAGTGGGATA+AGG - chr2.2:1881283-1881302 MS.gene36312:intron 45.0%
TGCAACCTTAATCCTTGTCG+CGG - chr2.2:1882600-1882619 MS.gene36312:intron 45.0%
TGCAGATGGAGCTTTCACAT+TGG - chr2.2:1883648-1883667 MS.gene36312:intron 45.0%
TTCCTAATCATCCTAACGGG+AGG - chr2.2:1881794-1881813 MS.gene36312:CDS 45.0%
TTTGCCATGACCTCAGTACT+TGG + chr2.2:1883615-1883634 None:intergenic 45.0%
! AAAGCACTCCTTCGACATCA+AGG + chr2.2:1881967-1881986 None:intergenic 45.0%
! AACATCGACACCAAGTACTG+AGG - chr2.2:1883602-1883621 MS.gene36312:intron 45.0%
! ACTAGCTTCAGTCTGCAAGT+TGG + chr2.2:1884850-1884869 None:intergenic 45.0%
! ACTCAATGGCACCCTGATTT+TGG - chr2.2:1885603-1885622 MS.gene36312:CDS 45.0%
! ATCAACAGCAAAGCATCCAG+GGG + chr2.2:1883874-1883893 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+TGG + chr2.2:1881290-1881309 None:intergenic 45.0%
! GGACACATGTGTCATTGCTT+GGG + chr2.2:1885102-1885121 None:intergenic 45.0%
! TGGACACATGTGTCATTGCT+TGG + chr2.2:1885103-1885122 None:intergenic 45.0%
!! ACCTTGGTGTTTCAACTGTG+AGG - chr2.2:1885282-1885301 MS.gene36312:intron 45.0%
!! CAGTACTTGGTGTCGATGTT+TGG + chr2.2:1883602-1883621 None:intergenic 45.0%
!! GGGTGCCATTGAGTAATTAC+CGG + chr2.2:1885597-1885616 None:intergenic 45.0%
!! GTACAACTGAAAGCACTCCT+TGG + chr2.2:1882407-1882426 None:intergenic 45.0%
!! TTTGGTTTGCTTGACGCGAT+AGG - chr2.2:1880991-1881010 MS.gene36312:intron 45.0%
!! TTTTGAGTGTCACCTGCTGA+AGG - chr2.2:1884410-1884429 MS.gene36312:intron 45.0%
!!! CTTGTTTTGGCTAAGGTGGA+TGG - chr2.2:1880714-1880733 MS.gene36312:intron 45.0%
!!! TTATTTTTATTAGAATTTTT+TGG - chr2.2:1880973-1880992 MS.gene36312:intron 5.0%
AAAAACCTGGATGTCCACCC+TGG - chr2.2:1882641-1882660 MS.gene36312:intron 50.0%
AACGTCTGCAACCATGAACC+AGG + chr2.2:1882662-1882681 None:intergenic 50.0%
AAGGTCCGCAACCACAATTC+AGG + chr2.2:1882249-1882268 None:intergenic 50.0%
ACGTCTGCAACCATGAACCA+GGG + chr2.2:1882661-1882680 None:intergenic 50.0%
ATCCAGGGGCAATCAACATG+TGG + chr2.2:1883860-1883879 None:intergenic 50.0%
GACAGACACCTTGGATGCAT+AGG + chr2.2:1884571-1884590 None:intergenic 50.0%
GCAGTGAAACCGCCAGAATA+AGG + chr2.2:1880822-1880841 None:intergenic 50.0%
TGGCTAAGGTGGATGGTGAT+AGG - chr2.2:1880721-1880740 MS.gene36312:intron 50.0%
TTGCACTCAAGGCTACCTCA+AGG - chr2.2:1881718-1881737 MS.gene36312:intron 50.0%
TTGTCAGGAAGGGCTTTGCA+AGG + chr2.2:1884168-1884187 None:intergenic 50.0%
! TTGAGGTAGCCTTGAGTGCA+AGG + chr2.2:1881719-1881738 None:intergenic 50.0%
! TTTGGGGTCTCGAAACCGTT+AGG - chr2.2:1884072-1884091 MS.gene36312:intron 50.0%
!! AGAGGTACCATGTCGACATG+AGG - chr2.2:1882969-1882988 MS.gene36312:CDS 50.0%
!! GACACCAAGTACTGAGGTCA+TGG - chr2.2:1883608-1883627 MS.gene36312:intron 50.0%
ATGAACCAGGGTGGACATCC+AGG + chr2.2:1882649-1882668 None:intergenic 55.0%
CCACACCGCGACAAGGATTA+AGG + chr2.2:1882608-1882627 None:intergenic 55.0%
CCTTAATCCTTGTCGCGGTG+TGG - chr2.2:1882605-1882624 MS.gene36312:intron 55.0%
CTCAAGCCCAGTCAAGCATC+AGG - chr2.2:1883750-1883769 MS.gene36312:intron 55.0%
GGACCGGTACGCCTGTTATT+CGG - chr2.2:1882839-1882858 MS.gene36312:intron 55.0%
TCTGCAACCATGAACCAGGG+TGG + chr2.2:1882658-1882677 None:intergenic 55.0%
TGGATGTCCACCCTGGTTCA+TGG - chr2.2:1882648-1882667 MS.gene36312:intron 55.0%
! TCTAGAACCACACCGCGACA+AGG + chr2.2:1882615-1882634 None:intergenic 55.0%
! TGCCACATGTTGATTGCCCC+TGG - chr2.2:1883855-1883874 MS.gene36312:intron 55.0%
!! GAGGGGAGAGTGCTTCCTTG+AGG + chr2.2:1881736-1881755 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 1880372 1885782 1880372 ID=MS.gene36312
chr2.2 mRNA 1880372 1885782 1880372 ID=MS.gene36312.t1;Parent=MS.gene36312
chr2.2 exon 1885313 1885782 1885313 ID=MS.gene36312.t1.exon1;Parent=MS.gene36312.t1
chr2.2 CDS 1885313 1885782 1885313 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
chr2.2 exon 1883215 1883344 1883215 ID=MS.gene36312.t1.exon2;Parent=MS.gene36312.t1
chr2.2 CDS 1883215 1883344 1883215 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
chr2.2 exon 1882893 1883058 1882893 ID=MS.gene36312.t1.exon3;Parent=MS.gene36312.t1
chr2.2 CDS 1882893 1883058 1882893 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
chr2.2 exon 1882383 1882501 1882383 ID=MS.gene36312.t1.exon4;Parent=MS.gene36312.t1
chr2.2 CDS 1882383 1882501 1882383 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
chr2.2 exon 1882102 1882182 1882102 ID=MS.gene36312.t1.exon5;Parent=MS.gene36312.t1
chr2.2 CDS 1882102 1882182 1882102 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
chr2.2 exon 1881935 1882024 1881935 ID=MS.gene36312.t1.exon6;Parent=MS.gene36312.t1
chr2.2 CDS 1881935 1882024 1881935 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
chr2.2 exon 1881774 1881845 1881774 ID=MS.gene36312.t1.exon7;Parent=MS.gene36312.t1
chr2.2 CDS 1881774 1881845 1881774 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
chr2.2 exon 1881621 1881689 1881621 ID=MS.gene36312.t1.exon8;Parent=MS.gene36312.t1
chr2.2 CDS 1881621 1881689 1881621 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
chr2.2 exon 1881216 1881296 1881216 ID=MS.gene36312.t1.exon9;Parent=MS.gene36312.t1
chr2.2 CDS 1881216 1881296 1881216 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
chr2.2 exon 1880746 1880880 1880746 ID=MS.gene36312.t1.exon10;Parent=MS.gene36312.t1
chr2.2 CDS 1880746 1880880 1880746 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
chr2.2 exon 1880558 1880611 1880558 ID=MS.gene36312.t1.exon11;Parent=MS.gene36312.t1
chr2.2 CDS 1880558 1880611 1880558 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
chr2.2 exon 1880372 1880467 1880372 ID=MS.gene36312.t1.exon12;Parent=MS.gene36312.t1
chr2.2 CDS 1880372 1880467 1880372 ID=cds.MS.gene36312.t1;Parent=MS.gene36312.t1
Gene Sequence

>MS.gene36312

ATGTCAAAATCCATCAATTTCCTTCTAACCCTTTTCTTATTACTCACTTTCAACAACGTTGTTACACAATGTTCTGAAGTTGATGAGTTTGATGAACTATTAGCATTAGACGATGAATTAGAGCGAGAAAAGGATCATGATGGTGTGAAATCTTCTGAAGCAGAGGTTTTAACCAAAGCACAAAGGATTGTTCATGAACTCAATAATGAAAATACAGAGAGAATTGTTAATGGGTATGAGTTTGTTCTTGTTCTTGGTTATGCACCTTGGTGTTCAAGAAGTGCTGAACTTATGCCTCATTTTGCTGAAGCTGCTAATTCTTTGAAAGATTTTGGAAATTCTCTTGTTTTGGCTAAGGTGGATGGTGATAGGTTTACTAAAGCTGCTTCTTTTCTTGGGATTAAAGGCTACCCTACTTTGCTGCTTTTTGTTAATGGGACTTCTCAACCTTATTCTGGCGGTTTCACTGCGTAAGAACTCTCACTTTGCTTTACTCAACTTGTTGTGTTTGTGTATTGATCATTGCTTTCAATTCTACATTATTTATTCCCATGGTTTCTATTACTACTAGTATGTGCTTGATGTTAGTTTATTTATTTATTTATTTTTATTAGAATTTTTTGGTTTGCTTGACGCGATAGGATGAGAAATGACTAGTTGGGGTAGTACTTATAGTAAAAAATATGGTGGTAACTAGGCTTAGATGATTTGGGCATGTAAAGAGAAGAACTATGGATTTTGTAGTTATGAGAGTAGATCAGATGGAGAGTAATCAAATCAGTAGAGGCAGAGGAAGACCAAGACAAACTATAAGAGAAACTATTAAGAAGGATCGAGATTAATGAGTTGGATATGGATAGATAGGATATATGATATAGATAGAAAATTATGTGGCGTTTGATCCATGTAGTTGACCCAACTTAGTGGGATAAGGCTTGGTTGTTGTTGTTTTCATGATGCCCTTGTTATCAAAATTTTAAATTGCTGCGGTGTTCGATTCTCGATATTGTGTAGTATTGCAATCAAAACTTTGCTGATGTCGCTTCTTGAATTGTGGACCTCAAGGCACTGATAAATGTTGCACTATTTATCAAATAAATTGCCTGAATGTTTATATGTTGAGGTGTTTTTGCAAGGAGCCTGTTTTTTGGTATATCGAAAGAATTCCCAATACTGAGCAGATTTGAATAAACAAGAGAATGATTCTAACTGGAATAAAGATATAAAGATTGATCAAAGAAATTGAGAAAAGAAAAAATCTTTAAATATCTTTCTCGTACTAACAGGTGAATGGGAAATAGGATTGAAAGAGAAGATACACAAGGTTTATAATGAAGAAGACAACCTTGCACTCAAGGCTACCTCAAGGAAGCACTCTCCCCTCACTAGAGCATTCTCTAGTTTACAACTTTCAAACAATAATTCCTAATCATCCTAACGGGAGGTTAGTCCTATTTATAGGCCATAGGATTAATAGCTATTAAAACAGAAAGTTTAACAAACTTAACAACTAACTAACCCCTAATTAACTTCTTAACTCCAATCCTGACAAACTCTCCTTTATTCTAAGTCCTAACAGTTTCTATGATGCACCTTGATGTCGAAGGAGTGCTTTCAATTCTACATTTGTTATTATTACCATGGTTTCTAGTTTCTACTACTAGTATGTGTGTGCTCAGTGTTGGTTATGTATTCTAGAGACTTGTTAATGGTACATTGATTTGTTTTCATGATGCCCTTGTTACCAAATTTTAAATTCTTGCCGCGTTGTGATTCTTAATAGTGTGGAGAATTGCAGTCAAAATGTGGCTGATGCAGTCTTAATTGTTGTTGTTATGCGGTTATTGAGATATCAAAAACCTCGATGTTTATGTCCTGAATTGTGGTTGCGGACCTTGTTTTGAAACCCTACTTGTTATTTGAAACGATGAACTCAAGGCACCGATAAGTGTTGAACTATTTATCAAATAAATTGCCTTTAGTAACTTGGAATGTTTATATAGGTATTTTTGTAACACACTTTTTTATGCGTCCAAGGAGTGCTTTCAGTTGTACATTTTTTATCACTGTTTTCTGCTACTAGTATGTGCTTGGTGTTGGTTTATGTACTATAGAGACTTGCTTATTGTACATTGATTTGTTTTCATGATGCCTTGTTATCAAAGTTTTAAATCGTGGTCACATTGTGTCTTTGATACTGTGGATAATTGTAGTCAAAATGTGGCTGATGCAACCTTAATCCTTGTCGCGGTGTGGTTCTAGAGACATCAAAAACCTGGATGTCCACCCTGGTTCATGGTTGCAGACGTTGTTTTGTAACCCTACCTGTTATCCCAAATGATGACCTCAATGCACCGATAAATGTTGAACTATTTAGAAATATATTGCTTGAATCACCTAAAATGTTTATATGTTGAGGAGTTTTGTGATTGTTCCAGGGATGATATAGTTATATGGGCAAGAAAAAGGACCGGTACGCCTGTTATTCGGATAAGTACAGAGAAAGCAGCAGAGGAATTTCTGAAAAAGTATCACACTTTTCTCATTGGACGCTTTGATAAATTTGAGGTAAGTAAAATCATCTCATAATGTATTCGAGAGGTACCATGTCGACATGAGGTTCACATGATTGGGAGTTGTGGTGTTGATCAATTAACAAAATAGTTTCATTATTCTGGATTTGGTACTGTGGTATTATATCATGTTTGTATTAAAATATGCCAGGGCCCTGAATATGAAGAATTTGTGAGTGCTGCAAAGTCCGATAATGAAACCCAGTTCGTTGAAGTGAGTAAGGTAGAGCTTGCCCAAGTTCTTTATCCAGATATCAAGCCTACTGGTAATTTTCTCGGGATCGTTAAGAGCGAACCTGAAAGATATACCGCATATGGTGAGTCTGTGATTTGTTTCTATCCATATGCTCAATTCGTTCTAGTATTTGACATTAAAAGATAAAAGTAAAACAGATACTGAAATCTCTTACAGTGTTCGTAACTTTAAAAGATAAAGTAAAACAGATGCTCAATGCATTCTAATGCATTATATTTATGCAAATCAGAACTATGTGAAAACTTAAAAGAACTACCTTGAAATTCCTGTTTTTTCTATTAACTTGAGCTGGGTAATAAATTCGCATTTATCAATTTCATTTTAGTTAATCAGTTAAAATTTTACCAAATTTTGTTTATGCCCGCCATGATTTTTTTTTTCCTTTCACTTGTTTTTCTCCAAACATCGACACCAAGTACTGAGGTCATGGCAAAACTTTATTGGCTATGCAGATGGAGCTTTCACATTGGATAAAATAATGGAGTTTTTGAGCTACAACAAATTTCCATTAGTTACACAACTCACTGAAATGAATTCTGTCAGAGTCTACTCAAGCCCAGTCAAGCATCAGGTCACTATTATTTCCAAGTTTTATTTATAATTGGATATTCAATGGTGTACAGTTCTGTTCATATTCTGTCTTTTGCGTGTTTTTGCCACATGTTGATTGCCCCTGGATGCTTTGCTGTTGATAACTTAAAACTTATTTGATCATTTATGTTTCCGTTCTAGCTTAAGAATAACCAATGTTAATTGTCTGTTATTCCCTAGGTTTTTGTCTTTGCGAACATTGATGACTTCAAGAATCTTCTTGATCCACTTCAAGAAGTAGCAAGAACTTTCAAGTCGAAGGTAATTACTTTGATCTGTATTTGGGGTCTCGAAACCGTTAGGCAATTTCCTGGTCTAAATTTTTCCTTCAAATGCAGATAATGTTTATATATGTGGATATTAACGACGAGAACCTTGCAAAGCCCTTCCTGACAATGTTTGGACTTGAAGAATCAACAAATACTGTGGTTAGTTTTCAAGTTAATAACAATTACTTGTTTATCAATCTAGATAATTGTGGAAACTTATACAAATTATTTCTTGGTGTGCCAAATAGGTAGCTGCATTTGATAATGGAATGAGCTCAAAATTTCTATTGGAGTCAAAACCAACACGAAGCAATATTGAAGTATTATCTTCTGTTCATATTAATTACTCTTTTGAGTGTCACCTGCTGAAGGAAACTAATTAATGTTAACTTGGAATTCTGCAGGAGTTTTGCAGTAAACTTGTGCAAGGTTCTTTGTTGACTTACTTCAAGTCGCAGCCAATACCTGATAATGTGAGAACCGTATGACATTTTTCTGCATGATTTTCCTATGCATCCAAGGTGTCTGTCCTACTATAGTGTTCGACATTTCAAGAACATCAGTTGGGCAGTCAGTGTCGTATGCAGTCCTTTATAAGCCTTTCAATTTAAGTGAATAAATTGATTTATACGTAAAATGTGTCACATTTATTCTTTTATACATATAGTTGGTTAATTAGTTATCTATAATAATATAATAGAGCAATAAAAGTGATTTCGAAGTTATATATTTTGTTCTGAAACTTAATTCAAGGTCGTCTTCAATATTAATAATGATAATGGCATTCCAACTTGCAGACTGAAGCTAGTGTTCAAGTTATTGTTGGGAAAACATTTGATGAAGAAATTTTGAACAGCAAGAAGGATGTGGTTTTAGAGGTTTGTGAAGTTTTATCTCTTCTATATCTCTTTTATGTGTGTCGTGTTCATACTTATTTAAAGAGGGAAGGGGAAAATGTCATCATCATTGAAGAACTCGTCGTTTTCTGAAAGTTGCCGCTTTGCACCAATTTTTTTATGGATAAAATGATGCACTTGACCCAAGCAATGACACATGTGTCCAAATTCTGTCATATATTAGTTTGGAGTGGAGATTTCACTATTTCACAGAATTCAATAAGAGCTACTACGCGATAGAGACCCTGTCATATTGCTTATCTGCTTATGCCTTGGTTGATTTTAACTCGCGGCTCGTGAATCATTACGTAAAACAGGTATTCACACCTTGGTGTTTCAACTGTGAGGACACAAGCAAGCAAGTAGAGAAGTTGGCAAAACACTACAAAAGTTCGAGTAATTTAATATTTGCAAAGATAGATGCTTCAGCAAATGAACATCCAAAACTGCAAGTAAGTGTTATTACAAAGAAGTTGTCTCGTCTTTTTTTATTTAATGGTAAACAAAACACTGAATAATATTCATCACTAATACGATCAAAATTTATGTTTACTGAAGGTTAATTTTACCTTTCCTAATTTTTCAGGTGAATGACTTTCCCACACTTTTACTTTACAAAGCAAATGATAAGACAAATCCGGTAATTACTCAATGGCACCCTGATTTTGGTGATATAATTTTCGTTTACAAAATTACCTCGCTTCTATAACGAAACGCTTGTTTAATGCAGATCAAGCTTTCTACGAAATCTAGTTTGAAAGAATTGGCTGCATCCATCAACAAACACATTAAAGTCAAGGATCAAGTCGCCAAAGATGAGCTATAG
Protein sequence

>MS.gene36312.t1

MSKSINFLLTLFLLLTFNNVVTQCSEVDEFDELLALDDELEREKDHDGVKSSEAEVLTKAQRIVHELNNENTERIVNGYEFVLVLGYAPWCSRSAELMPHFAEAANSLKDFGNSLVLAKVDGDRFTKAASFLGIKGYPTLLLFVNGTSQPYSGGFTADDIVIWARKRTGTPVIRISTEKAAEEFLKKYHTFLIGRFDKFEGPEYEEFVSAAKSDNETQFVEVSKVELAQVLYPDIKPTGNFLGIVKSEPERYTAYDGAFTLDKIMEFLSYNKFPLVTQLTEMNSVRVYSSPVKHQVFVFANIDDFKNLLDPLQEVARTFKSKIMFIYVDINDENLAKPFLTMFGLEESTNTVVAAFDNGMSSKFLLESKPTRSNIEEFCSKLVQGSLLTYFKSQPIPDNTEASVQVIVGKTFDEEILNSKKDVVLEVFTPWCFNCEDTSKQVEKLAKHYKSSSNLIFAKIDASANEHPKLQVNDFPTLLLYKANDKTNPIKLSTKSSLKELAASINKHIKVKDQVAKDEL