AlfalfaGEDB | MS.gene31429

M. sativa cultivar XinJiangDaYe / MS.gene31429

KEGG: K09510
GO: GO:0003674 GO:0005488 GO:0005515 GO:0006457 GO:0008150 GO:0009987 GO:0051082
PFAM: PF00226.34 PF01556.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31429.t1	XP_013465155.1	97.9	336	7	0	1	336	1	336	2.60E-174	621.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31429.t1	Q9QYJ3	45.6	349	164	7	1	334	1	338	1.0e-73	278.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31429.t1	A0A072VM07	97.9	336	7	0	1	336	1	336	1.9e-174	621.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052037	MS.gene31429	0.826648	2.42E-54	-1.69E-46
MS.gene052582	MS.gene31429	0.801379	9.26E-49	-1.69E-46
MS.gene05308	MS.gene31429	0.83738	5.38E-57	-1.69E-46
MS.gene053082	MS.gene31429	0.800201	1.61E-48	-1.69E-46
MS.gene054651	MS.gene31429	0.812074	5.09E-51	-1.69E-46
MS.gene056973	MS.gene31429	0.830225	3.31E-55	-1.69E-46
MS.gene057208	MS.gene31429	0.811139	8.13E-51	-1.69E-46
MS.gene058279	MS.gene31429	0.808848	2.53E-50	-1.69E-46
MS.gene058702	MS.gene31429	0.806291	8.84E-50	-1.69E-46
MS.gene060310	MS.gene31429	0.811241	7.72E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31429.t1	MTR_2g090705	97.917	336	7	0	1	336	1	336	0.0	681
MS.gene31429.t1	MTR_4g078850	68.362	354	83	5	1	335	1	344	7.00e-173	484
MS.gene31429.t1	MTR_2g014470	67.049	349	91	4	1	335	1	339	1.89e-163	459
MS.gene31429.t1	MTR_4g015840	65.043	349	100	6	1	336	1	340	3.01e-157	444
MS.gene31429.t1	MTR_2g014480	56.734	349	120	5	1	328	1	339	6.44e-132	380
MS.gene31429.t1	MTR_3g108020	54.783	345	129	5	1	336	1	327	1.01e-124	361
MS.gene31429.t1	MTR_4g015840	60.324	247	81	4	102	335	20	262	1.82e-101	299
MS.gene31429.t1	MTR_5g037880	53.886	193	85	1	142	334	86	274	3.14e-69	218
MS.gene31429.t1	MTR_5g037880	56.000	75	26	1	4	71	5	79	1.52e-18	84.7
MS.gene31429.t1	MTR_3g437840	55.396	139	62	0	197	335	24	162	6.39e-52	169

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31429.t1	AT2G20560	71.053	342	85	3	1	334	1	336	7.95e-165	463
MS.gene31429.t1	AT4G28480	69.801	351	85	6	1	334	1	347	2.66e-157	444
MS.gene31429.t1	AT3G08910	65.179	336	103	4	1	336	1	322	1.33e-154	436
MS.gene31429.t1	AT5G01390	59.420	345	119	5	1	335	1	334	3.77e-142	405
MS.gene31429.t1	AT5G25530	55.556	360	115	6	1	336	1	339	1.23e-135	389
MS.gene31429.t1	AT5G25530	54.348	368	115	7	1	336	1	347	1.09e-132	382
MS.gene31429.t1	AT1G10350	52.857	350	149	5	1	336	1	348	9.71e-125	362
MS.gene31429.t1	AT3G47940	54.286	350	144	4	1	336	1	348	1.23e-119	349
MS.gene31429.t1	AT1G59725	56.083	337	140	4	1	336	1	330	1.89e-119	348
MS.gene31429.t1	AT5G01390	53.254	338	93	5	1	335	1	276	6.03e-116	337

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Find 95 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATCACTTTCCCTGAGA+AGG	0.531484	2.4:-9773415	MS.gene31429:CDS
AACTGATACGGAAAGTCATC+AGG	0.458809	2.4:+9775726	None:intergenic
AAGATCACTTTCCCTGAGAA+GGG	0.579865	2.4:-9773414	MS.gene31429:CDS
AATCCCTTTGGTGGAATGGG+AGG	0.575318	2.4:-9775654	MS.gene31429:CDS
AATGGCATGTTTGGATCCTA+TGG	0.531436	2.4:-9775615	MS.gene31429:CDS
ACAAGCTTCTGCAGGTTGAT+CGG	0.533594	2.4:-9776130	MS.gene31429:CDS
ACAGAAAACTCGCCATGAAG+TGG	0.563345	2.4:-9776076	MS.gene31429:CDS
ACTGTGATCAAGAATTTCTC+TGG	0.501571	2.4:+9775467	None:intergenic
ACTTCCTCCAGCATCACCAT+AGG	0.584524	2.4:+9775599	None:intergenic
AGAAGGAATGCCACTGCCAA+AGG	0.547658	2.4:-9773166	MS.gene31429:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACTCAGCAAAAATATCATC+AGG	+	chr2.4:9773521-9773540	None:intergenic	30.0%
AGAGCTGTTTATGATCAATA+TGG	-	chr2.4:9773380-9773399	MS.gene31429:CDS	30.0%
AGCTGTTTATGATCAATATG+GGG	-	chr2.4:9773382-9773401	MS.gene31429:CDS	30.0%
ATACTTAAAATTGGAGGAAG+AGG	+	chr2.4:9774544-9774563	None:intergenic	30.0%
ATAGACAATAAGTAGCTTCT+TGG	-	chr2.4:9775012-9775031	MS.gene31429:intron	30.0%
ATATGAAGCTAGAGTTCTAT+TGG	-	chr2.4:9774895-9774914	MS.gene31429:intron	30.0%
ATCTGCTTCTTTATTGAAAG+AGG	-	chr2.4:9774446-9774465	MS.gene31429:intron	30.0%
ATGCATGATATCTCTCATTA+TGG	-	chr2.4:9775643-9775662	MS.gene31429:CDS	30.0%
ATTAAACAAGAGAAGGACAA+CGG	+	chr2.4:9775403-9775422	None:intergenic	30.0%
ATTGCTGAGATTTACATGTT+TGG	-	chr2.4:9773880-9773899	MS.gene31429:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	9773062	9776168	9773062	ID=MS.gene31429
chr2.4	mRNA	9773062	9776168	9773062	ID=MS.gene31429.t1;Parent=MS.gene31429
chr2.4	exon	9776004	9776168	9776004	ID=MS.gene31429.t1.exon1;Parent=MS.gene31429.t1
chr2.4	CDS	9776004	9776168	9776004	ID=cds.MS.gene31429.t1;Parent=MS.gene31429.t1
chr2.4	exon	9775465	9775871	9775465	ID=MS.gene31429.t1.exon2;Parent=MS.gene31429.t1
chr2.4	CDS	9775465	9775871	9775465	ID=cds.MS.gene31429.t1;Parent=MS.gene31429.t1
chr2.4	exon	9773062	9773500	9773062	ID=MS.gene31429.t1.exon3;Parent=MS.gene31429.t1
chr2.4	CDS	9773062	9773500	9773062	ID=cds.MS.gene31429.t1;Parent=MS.gene31429.t1

Gene Sequence

>MS.gene31429

ATGGGTGTTGACTACTACAAGCTTCTGCAGGTTGATCGGAACGCCAAAGACGATGACTTGAAGAAAGCTTACAGAAAACTCGCCATGAAGTGGCATCCTGATAAGAACCCTAATAACAAAAAAGAAGCTGAAGCCAAATTTAAGCAAATCTCAGAAGCTTATGATGTAAGTTTTTTTTAAAGGGTATCTTAAATTTTCAATTTTTAGTGGATCTTCTATGAAATTATTGATTAAAGTTTCAATTTTTGCATCTGGGTCATGCTGATTTTGTGTTGGGAATTTGTTTTTTGTTATTAGGTATTGAGTGATTCTAACAAGAGAGCTGTTTATGATCAATATGGGGAAGATGGGCTGAAGGGTCAAATGCCACCACCACCTGATTCTCATGCCTCTGGTAGTGGTGGTAGTAGAAACTTTTCGCCTGATGACTTTCCGTATCAGTTCAATCATCGGACTCCTGATGATATTTTTGCTGAGTTTTTTGGGGATCGAAATCCCTTTGGTGGAATGGGAGGGATGGGAAGAGGTAGCAATGGCATGTTTGGATCCTATGGTGATGCTGGAGGAAGTGGAGTCAATGTGCATCAAGGTCCTCCTCGTAAGGCGCCTCCTATTGAGAACAAGTTGCTATGCTCTCTTGAGGATATATATAAAGGGACCACTAAGAAGATGAAGATCACCAGAGAAATTCTTGATCACAGTGGGTGAGTTATTGTTCTTACCTGCCTAGTTCTTTTTTCAATGCTGTGTTTATTGCCATCAGTTATTAGATATTTATAGTTAAAGTAGCTCAGTTTCAGTTTGGTTCATAGTGTAGCATTGCTGAGATTTACATGTTTGGTTCATGCTTCATAGTGTAGCATTGCTAGATTTACAGGTTTTAACCGAAGTACAAACACTCGTGGATTAATTGGAGAAGAGACTGATTGGTCTCTTATAGCTCGGCTGATTAGCAATGTTATTTGATTCATAATATTAGATAGAGAGTGGGGGCAGCACCCATAGTAGAAAAGATTGTGGGAAATAGGCTTAGGTGGTTTAGGCATTTAGAAAGAAGACCTGTACTGTAGATTATGTAGGAAGGACAGTAGATGAGATGGAGGATAGTCAAATCACTAGAGGCAGAGGAAGACTTGGAAAAACGATAAGAGAAACTATTAAGAAAGATCTAGAGATTAATGAGTTGTATCGAAATATGGTTTATGGCGTAGTTTGATCCATGTAGCCAACCCCACTAAGTGAGATAAGACTTGTTTATTGTTGTTGTACTTTGTGAATTGTATCATATATCCATGTTTTTGCTATTTCATCCATGTTGTAGAGAATATGCTGGTAGGTTTTGTAGTTGTGGTTGGTGCAATGTATGTGGTGCCATTTGTGTGGCATCTGCTTCTTTATTGAAAGAGGAAAGTTACCTAGAATTATAGTAATTGTTTAAATGATTACAGCAAGCTTTGACTGATACCGCAGTCGAACCTTCCTCTTCCTCCAATTTTAAGTATTGATGGTTCAGAATTAACTTGAATCTGAGTTTTACACTCAAGTCAGGTTTGCCTTGAATTTTTTCTAATAGAACATTTTTTTTTTTTGGGTAGGGTTTACACTTCTAGCAAAAGTATTGCTCAGTTGTAGACTATGTAGTACCGACACGTCAGATTGAATGTTTGCATTCAGTGTGTGACATGTATCACTATATGGCATCGACACATGTGGTTACATTTAAATATTCCCACTTTTTCAAAATTTTAAATTAATACCAGTGTCAAAGTGTCTGTGTCATGTCTGGTGTCGTGTCCGGTGTCTATGTCAATGCTTCATAGGTTAACATGGCCGATATGAAGCTAGAGTTCTATTGGTATAAATTGGTAACTATTGTTATAAATTGGTAACTATTGTTATTCTAAGTAATGAATTAATGAAATTTGAACTTTTGATCTTTAAGTGTTATTTATAGACAATAAGTAGCTTCTTGGCAAATTGCTCTTTCTAGAACTTTTTATTTAATAACCATATCATAATGTTGATTTATAGTAGTATGTTTGGGGGATAAGTAATACTAGATTTGTGATGTTTGGCAATGCTCATTCACATCAGATAACAGTGTATTGAAACAGTTGATCATATTGTTCTTTTGTCATAAACTTTTTGTATCTGGTTTTTGAGATTATATTGGTCCTATTTCATTATAGTCCAGGGATGTAGAAGTCTCCTGCGGATGAACATTTTGATGAAATCTGAATCTTATAATGTTCTATCCTTCTCTTGCTTAATGTTACAATGGCTTGGTGTTTGTTAAACGGGATCAATAACTGGTTTGCCTTAGTCTAATGTACTAACCCCGTTGTCCTTCTCTTGTTTAATGTTACGGCTTGGTGTTTGTTAAACGGGATCAATAGCTGGTTTGCCTTAGTCTAATGTACTAACCCCATTGTGCATATTGTTTGGGATGGCATTTTAAACTGTTGTTATTGCTAGGGAAGTTGATGTTTTTCTAGTATAATGGATTTTCCATGTTAGTCTGTATTAATATCCTCTAATTTAAACATCTAGAATTCGAGATAAGGGTTGAATATATAAATTTATGCATGATATCTCTCATTATGGAATTATTGCTGTTGTAGAATGCCCTATTGATGACTTTGTTTTTTTTATTTCCTTTCGAGTGCAGCAAAGTCACATCGCTGGATGAAATCTTGACAATTAGTGTCAAACCTGGATGGAAGAAGGGGACAAAGATCACTTTCCCTGAGAAGGGAAATGAACATCCAAATACAATACCTGCTGATATCATTTTCGTCATTGATGAAAAACCACACAATGTGTTCACTCGTGAAGGAAATGATCTAATTGTAACTCAGAAAATTTCTCTTGCAGAAGCTTTAGCGGGTTGTACAGTGAATCTCACCACACTTGATGGTAGAAATTTGACTGTAGTGATCAACAATGTTGTTCATCCTGAGTATGAAGAGGTTGTTCCAAGAGAAGGAATGCCACTGCCAAAGGATCCGACAAAGAAGGGAAACTTGAGGATAAAGTTCAACGTCAAATTCCCAGCTCGGCTCACTTCGGATCAGAAGGCAGGAATGAAGAAAGTCTTGGCTGGATAA

Protein sequence

>MS.gene31429.t1

MGVDYYKLLQVDRNAKDDDLKKAYRKLAMKWHPDKNPNNKKEAEAKFKQISEAYDVLSDSNKRAVYDQYGEDGLKGQMPPPPDSHASGSGGSRNFSPDDFPYQFNHRTPDDIFAEFFGDRNPFGGMGGMGRGSNGMFGSYGDAGGSGVNVHQGPPRKAPPIENKLLCSLEDIYKGTTKKMKITREILDHSGKVTSLDEILTISVKPGWKKGTKITFPEKGNEHPNTIPADIIFVIDEKPHNVFTREGNDLIVTQKISLAEALAGCTVNLTTLDGRNLTVVINNVVHPEYEEVVPREGMPLPKDPTKKGNLRIKFNVKFPARLTSDQKAGMKKVLAG