Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31836.t1 | KEH40440.1 | 96.8 | 156 | 5 | 0 | 1 | 156 | 9 | 164 | 2.80E-78 | 301.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31836.t1 | Q6NLQ3 | 52.9 | 155 | 72 | 1 | 2 | 156 | 11 | 164 | 4.4e-40 | 165.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31836.t1 | A0A072VFT0 | 96.8 | 156 | 5 | 0 | 1 | 156 | 9 | 164 | 2.0e-78 | 301.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04926 | MS.gene31836 | 0.825322 | 4.99E-54 | -1.69E-46 |
| MS.gene049488 | MS.gene31836 | -0.801877 | 7.32E-49 | -1.69E-46 |
| MS.gene051996 | MS.gene31836 | 0.806806 | 6.88E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene31836 | 0.807398 | 5.15E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene31836 | 0.879334 | 1.36E-69 | -1.69E-46 |
| MS.gene054742 | MS.gene31836 | 0.840604 | 7.87E-58 | -1.69E-46 |
| MS.gene056330 | MS.gene31836 | 0.821293 | 4.36E-53 | -1.69E-46 |
| MS.gene056680 | MS.gene31836 | 0.801741 | 7.80E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene31836 | 0.804235 | 2.38E-49 | -1.69E-46 |
| MS.gene056920 | MS.gene31836 | 0.823994 | 1.03E-53 | -1.69E-46 |
| MS.gene059891 | MS.gene31836 | 0.805961 | 1.04E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene31836 | 0.806506 | 7.96E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31836.t1 | MTR_1g028970 | 96.795 | 156 | 5 | 0 | 1 | 156 | 9 | 164 | 6.77e-110 | 310 |
| MS.gene31836.t1 | MTR_1g028970 | 96.795 | 156 | 5 | 0 | 1 | 156 | 9 | 164 | 2.77e-109 | 310 |
| MS.gene31836.t1 | MTR_1g028970 | 96.795 | 156 | 5 | 0 | 1 | 156 | 9 | 164 | 2.97e-109 | 310 |
| MS.gene31836.t1 | MTR_1g028960 | 90.385 | 156 | 15 | 0 | 1 | 156 | 8 | 163 | 5.72e-100 | 286 |
| MS.gene31836.t1 | MTR_3g090530 | 68.354 | 158 | 47 | 3 | 1 | 156 | 7 | 163 | 3.41e-74 | 219 |
| MS.gene31836.t1 | MTR_3g090530 | 68.354 | 158 | 47 | 3 | 1 | 156 | 7 | 163 | 4.62e-73 | 218 |
| MS.gene31836.t1 | MTR_3g090530 | 68.354 | 158 | 47 | 3 | 1 | 156 | 7 | 163 | 1.03e-72 | 218 |
| MS.gene31836.t1 | MTR_3g090530 | 64.130 | 92 | 32 | 1 | 66 | 156 | 7 | 98 | 1.03e-37 | 125 |
| MS.gene31836.t1 | MTR_3g090530 | 64.130 | 92 | 32 | 1 | 66 | 156 | 7 | 98 | 9.05e-37 | 124 |
| MS.gene31836.t1 | MTR_3g090530 | 64.130 | 92 | 32 | 1 | 66 | 156 | 7 | 98 | 1.17e-36 | 124 |
| MS.gene31836.t1 | MTR_1g075710 | 38.281 | 128 | 79 | 0 | 28 | 155 | 19 | 146 | 4.80e-29 | 105 |
| MS.gene31836.t1 | MTR_1g041495 | 38.281 | 128 | 79 | 0 | 28 | 155 | 19 | 146 | 2.38e-28 | 104 |
| MS.gene31836.t1 | MTR_1g041495 | 38.281 | 128 | 79 | 0 | 28 | 155 | 19 | 146 | 2.89e-28 | 104 |
| MS.gene31836.t1 | MTR_1g075700 | 36.719 | 128 | 77 | 1 | 28 | 155 | 19 | 142 | 3.23e-24 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31836.t1 | AT1G21360 | 52.903 | 155 | 72 | 1 | 2 | 156 | 11 | 164 | 3.62e-54 | 169 |
| MS.gene31836.t1 | AT1G21360 | 52.903 | 155 | 72 | 1 | 2 | 156 | 11 | 164 | 4.80e-54 | 170 |
| MS.gene31836.t1 | AT3G21260 | 51.875 | 160 | 72 | 2 | 2 | 156 | 15 | 174 | 5.61e-50 | 160 |
| MS.gene31836.t1 | AT1G21360 | 54.902 | 102 | 46 | 0 | 55 | 156 | 1 | 102 | 3.92e-34 | 117 |
| MS.gene31836.t1 | AT3G21260 | 55.056 | 89 | 40 | 0 | 68 | 156 | 2 | 90 | 2.71e-29 | 105 |
| MS.gene31836.t1 | AT2G33470 | 37.302 | 126 | 79 | 0 | 28 | 153 | 19 | 144 | 1.35e-27 | 102 |
| MS.gene31836.t1 | AT2G33470 | 37.302 | 126 | 79 | 0 | 28 | 153 | 19 | 144 | 1.35e-27 | 102 |
| MS.gene31836.t1 | AT3G21260 | 54.118 | 85 | 39 | 0 | 72 | 156 | 1 | 85 | 1.53e-27 | 100 |
Find 33 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAACAACGAATCTAAATT+TGG | 0.270826 | 1.1:+14541840 | MS.gene31836:CDS |
| TTTGGTAGAGATATTGAAAC+TGG | 0.311281 | 1.1:+14541858 | MS.gene31836:CDS |
| CAATGATCCTGAAAAGAAAA+TGG | 0.314820 | 1.1:+14542882 | MS.gene31836:CDS |
| TATTCAGTTCTGCATGTTCT+TGG | 0.321499 | 1.1:+14540822 | MS.gene31836:CDS |
| TGTCATTGAAGAACTTTCTA+TGG | 0.343601 | 1.1:+14540725 | MS.gene31836:CDS |
| ACCAAATTTAGATTCGTTGT+TGG | 0.382610 | 1.1:-14541841 | None:intergenic |
| TGGGGATGTGAGCAGCTTCA+TGG | 0.400980 | 1.1:-14540776 | None:intergenic |
| TGTCTCAAAACAGCCATTGC+TGG | 0.413170 | 1.1:-14540951 | None:intergenic |
| GCTGCAGTAAGGCCTTTGTT+TGG | 0.415497 | 1.1:+14541914 | MS.gene31836:CDS |
| CATTAAAACCGTGGCATGGA+TGG | 0.470378 | 1.1:+14542935 | MS.gene31836:CDS |
| TGAAAAGAAAATGGAGAAAG+TGG | 0.505804 | 1.1:+14542891 | MS.gene31836:CDS |
| ATAGAGAGAAAAGGCTTGGT+GGG | 0.506837 | 1.1:-14540795 | None:intergenic |
| ACGGAAGGCATTGCAAAGAA+AGG | 0.507034 | 1.1:+14541886 | MS.gene31836:CDS |
| GGATAGTATTTGTAATAATG+AGG | 0.508394 | 1.1:-14542860 | None:intergenic |
| AGGCCTTTGTTTGGCTCACA+AGG | 0.523024 | 1.1:+14541923 | MS.gene31836:CDS |
| CGGAAGGCATTGCAAAGAAA+GGG | 0.536447 | 1.1:+14541887 | MS.gene31836:CDS |
| GAATAACATATAGAGAGAAA+AGG | 0.539202 | 1.1:-14540804 | None:intergenic |
| GAAAGGGTCTAGCTGCAGTA+AGG | 0.541855 | 1.1:+14541903 | MS.gene31836:CDS |
| ACATATAGAGAGAAAAGGCT+TGG | 0.544110 | 1.1:-14540799 | None:intergenic |
| ATAATGAGGAGGTAAAATCC+AGG | 0.549318 | 1.1:-14542846 | None:intergenic |
| TATAGAGAGAAAAGGCTTGG+TGG | 0.564749 | 1.1:-14540796 | None:intergenic |
| GATATTGAAACTGGAAGTAA+CGG | 0.564790 | 1.1:+14541867 | MS.gene31836:CDS |
| GGAGCTATTATGCAGGACCC+TGG | 0.569550 | 1.1:+14542828 | MS.gene31836:intron |
| AGATGTGTATCAAAATATCA+AGG | 0.576462 | 1.1:+14540974 | MS.gene31836:CDS |
| CATTGAAGAACTTTCTATGG+TGG | 0.588939 | 1.1:+14540728 | MS.gene31836:CDS |
| GTTACATTAAAACCGTGGCA+TGG | 0.603420 | 1.1:+14542931 | MS.gene31836:CDS |
| GATGAAATCCATCCATGCCA+CGG | 0.603497 | 1.1:-14542943 | None:intergenic |
| TAATGAGGAGGTAAAATCCA+GGG | 0.624879 | 1.1:-14542845 | None:intergenic |
| TTGAAACTGGAAGTAACGGA+AGG | 0.637724 | 1.1:+14541871 | MS.gene31836:CDS |
| TCACCTTGTGAGCCAAACAA+AGG | 0.647841 | 1.1:-14541926 | None:intergenic |
| TAGTATTTGTAATAATGAGG+AGG | 0.660461 | 1.1:-14542857 | None:intergenic |
| ATGAAGTTACATTAAAACCG+TGG | 0.682056 | 1.1:+14542926 | MS.gene31836:CDS |
| TAGAGAGAAAAGGCTTGGTG+GGG | 0.682249 | 1.1:-14540794 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAACTACTTTAATAAATA+AGG | + | chr1.1:14542684-14542703 | MS.gene31836:intron | 10.0% |
| !! | TAAGAAAAATTTAACATAAA+TGG | - | chr1.1:14542354-14542373 | None:intergenic | 10.0% |
| !! | TTAACTACTTTAATAAATAA+GGG | + | chr1.1:14542685-14542704 | MS.gene31836:intron | 10.0% |
| !!! | AAATTAAGATATTTTTTCTT+TGG | - | chr1.1:14542806-14542825 | None:intergenic | 10.0% |
| !!! | ATTACAAGATTTTTTTTTTT+TGG | - | chr1.1:14542666-14542685 | None:intergenic | 10.0% |
| !! | AGAAAAAATATCTTAATTTC+AGG | + | chr1.1:14542807-14542826 | MS.gene31836:intron | 15.0% |
| !!! | ATCGTATATCTTTTTTTTTT+AGG | + | chr1.1:14543060-14543079 | MS.gene31836:intron | 15.0% |
| !!! | CTTATTTTGAGATATTTTTT+TGG | - | chr1.1:14541980-14541999 | None:intergenic | 15.0% |
| !!! | TCGTATATCTTTTTTTTTTA+GGG | + | chr1.1:14543061-14543080 | MS.gene31836:intron | 15.0% |
| !!! | TTTTCATAGTAAAAATGTTA+GGG | + | chr1.1:14541094-14541113 | MS.gene31836:intron | 15.0% |
| !!! | TTTTTCATAGTAAAAATGTT+AGG | + | chr1.1:14541093-14541112 | MS.gene31836:intron | 15.0% |
| !! | AAAACTGATTGAAAATTGAA+AGG | - | chr1.1:14543011-14543030 | None:intergenic | 20.0% |
| !! | AAAATGTTAGGGATTATATA+TGG | + | chr1.1:14541105-14541124 | MS.gene31836:intron | 20.0% |
| !! | AGAAAAACTTTATAGATCAT+TGG | - | chr1.1:14541584-14541603 | None:intergenic | 20.0% |
| !! | AGTATAATGAAAGAGTTAAA+TGG | - | chr1.1:14542191-14542210 | None:intergenic | 20.0% |
| !! | CCCATATTATATAATGTAAA+GGG | - | chr1.1:14541682-14541701 | None:intergenic | 20.0% |
| !! | CCCTTTACATTATATAATAT+GGG | + | chr1.1:14541679-14541698 | MS.gene31836:intron | 20.0% |
| !! | CCTTTACATTATATAATATG+GGG | + | chr1.1:14541680-14541699 | MS.gene31836:intron | 20.0% |
| !! | TATCAAACAAACTATTATGT+GGG | + | chr1.1:14542235-14542254 | MS.gene31836:intron | 20.0% |
| !! | TATTATATAATGTAAAGGGA+AGG | - | chr1.1:14541678-14541697 | None:intergenic | 20.0% |
| !! | TCCCTTTACATTATATAATA+TGG | + | chr1.1:14541678-14541697 | MS.gene31836:intron | 20.0% |
| !! | TTATCAAACAAACTATTATG+TGG | + | chr1.1:14542234-14542253 | MS.gene31836:intron | 20.0% |
| !! | TTTAATACACAACTAATCAT+TGG | - | chr1.1:14541778-14541797 | None:intergenic | 20.0% |
| !!! | TATGTGTTTAAAGTTGTTTT+GGG | - | chr1.1:14542106-14542125 | None:intergenic | 20.0% |
| !!! | TTATGTGTTTAAAGTTGTTT+TGG | - | chr1.1:14542107-14542126 | None:intergenic | 20.0% |
| !!! | TTCGTACAATTTTTTAATTC+AGG | + | chr1.1:14542611-14542630 | MS.gene31836:intron | 20.0% |
| ! | ACACTCAATAAGAAAAATTG+AGG | - | chr1.1:14542428-14542447 | None:intergenic | 25.0% |
| ! | ACGTGTAAACAGAAAAAATT+GGG | + | chr1.1:14540928-14540947 | MS.gene31836:intron | 25.0% |
| ! | AGATGTGTATCAAAATATCA+AGG | + | chr1.1:14540974-14540993 | MS.gene31836:CDS | 25.0% |
| ! | AGTAATGACTGAAATTAGAT+TGG | - | chr1.1:14543203-14543222 | None:intergenic | 25.0% |
| ! | ATCGTCTATTAAGTAGTTAT+AGG | - | chr1.1:14541159-14541178 | None:intergenic | 25.0% |
| ! | ATTAAGAGAAGGTTAAGTAA+GGG | - | chr1.1:14541069-14541088 | None:intergenic | 25.0% |
| ! | CCCCATATTATATAATGTAA+AGG | - | chr1.1:14541683-14541702 | None:intergenic | 25.0% |
| ! | GAATAACATATAGAGAGAAA+AGG | - | chr1.1:14540807-14540826 | None:intergenic | 25.0% |
| ! | GGATAGTATTTGTAATAATG+AGG | - | chr1.1:14542863-14542882 | None:intergenic | 25.0% |
| ! | GTTAGGTGGTTAATAAATTA+AGG | + | chr1.1:14541647-14541666 | MS.gene31836:intron | 25.0% |
| ! | TACGTGTAAACAGAAAAAAT+TGG | + | chr1.1:14540927-14540946 | MS.gene31836:intron | 25.0% |
| ! | TAGGCAAAACTTTGATATTA+TGG | - | chr1.1:14541445-14541464 | None:intergenic | 25.0% |
| ! | TAGTATTTGTAATAATGAGG+AGG | - | chr1.1:14542860-14542879 | None:intergenic | 25.0% |
| ! | TATGTTAACCCTTAGATTAT+CGG | + | chr1.1:14541215-14541234 | MS.gene31836:intron | 25.0% |
| ! | TGAAAAAATGCATTAAGAGA+AGG | - | chr1.1:14541080-14541099 | None:intergenic | 25.0% |
| ! | TGAACATAAAAGTTAACCAA+GGG | + | chr1.1:14541618-14541637 | MS.gene31836:intron | 25.0% |
| ! | TGAATTGAAAGACTTAGTTA+TGG | - | chr1.1:14541012-14541031 | None:intergenic | 25.0% |
| ! | TTGAACATAAAAGTTAACCA+AGG | + | chr1.1:14541617-14541636 | MS.gene31836:intron | 25.0% |
| !! | AACTTTGGTAATTTGAAGTT+AGG | + | chr1.1:14541246-14541265 | MS.gene31836:intron | 25.0% |
| !! | ATGGAAAAGTACAATAATTG+AGG | - | chr1.1:14542335-14542354 | None:intergenic | 25.0% |
| !! | GAGGATTTTTAATATCAACT+CGG | - | chr1.1:14542316-14542335 | None:intergenic | 25.0% |
| !!! | ATTTTTTATGAGACCATACT+TGG | - | chr1.1:14541279-14541298 | None:intergenic | 25.0% |
| ACCAAATTTAGATTCGTTGT+TGG | - | chr1.1:14541844-14541863 | None:intergenic | 30.0% | |
| ATGAAGTTACATTAAAACCG+TGG | + | chr1.1:14542926-14542945 | MS.gene31836:CDS | 30.0% | |
| ATGTTAACCCTTAGATTATC+GGG | + | chr1.1:14541216-14541235 | MS.gene31836:intron | 30.0% | |
| CAATGATCCTGAAAAGAAAA+TGG | + | chr1.1:14542882-14542901 | MS.gene31836:CDS | 30.0% | |
| CATTAAGAGAAGGTTAAGTA+AGG | - | chr1.1:14541070-14541089 | None:intergenic | 30.0% | |
| GAAACTTACCAAAAATACGA+GGG | + | chr1.1:14542278-14542297 | MS.gene31836:intron | 30.0% | |
| GATATTGAAACTGGAAGTAA+CGG | + | chr1.1:14541867-14541886 | MS.gene31836:CDS | 30.0% | |
| GTGAATGTAAATAGAGAGAA+TGG | - | chr1.1:14541562-14541581 | None:intergenic | 30.0% | |
| TCCAACAACGAATCTAAATT+TGG | + | chr1.1:14541840-14541859 | MS.gene31836:CDS | 30.0% | |
| TCGTTCTCATTGAAAGAATA+CGG | - | chr1.1:14541519-14541538 | None:intergenic | 30.0% | |
| TGAAAAGAAAATGGAGAAAG+TGG | + | chr1.1:14542891-14542910 | MS.gene31836:CDS | 30.0% | |
| TGAAACTTACCAAAAATACG+AGG | + | chr1.1:14542277-14542296 | MS.gene31836:intron | 30.0% | |
| TGACATCATAACTACAATTG+AGG | + | chr1.1:14541409-14541428 | MS.gene31836:intron | 30.0% | |
| TGTCATTGAAGAACTTTCTA+TGG | + | chr1.1:14540725-14540744 | MS.gene31836:CDS | 30.0% | |
| TTAACCAAGGGTTATAAGTT+AGG | + | chr1.1:14541630-14541649 | MS.gene31836:intron | 30.0% | |
| TTTGGTAGAGATATTGAAAC+TGG | + | chr1.1:14541858-14541877 | MS.gene31836:CDS | 30.0% | |
| ! | AAGAACTCGAGTTCAATTTT+TGG | - | chr1.1:14541310-14541329 | None:intergenic | 30.0% |
| ! | ACTTTCTCCATTTTCTTTTC+AGG | - | chr1.1:14542892-14542911 | None:intergenic | 30.0% |
| ! | GAGATCTAGAGTTTAAATCT+TGG | - | chr1.1:14541137-14541156 | None:intergenic | 30.0% |
| ! | TTTCTAAATTGCTGTTGCAT+AGG | - | chr1.1:14541464-14541483 | None:intergenic | 30.0% |
| !! | CATTTTCTTTTCAGGATCAT+TGG | - | chr1.1:14542884-14542903 | None:intergenic | 30.0% |
| !!! | AGTGTATAGACTTTTTTGAG+AGG | + | chr1.1:14542443-14542462 | MS.gene31836:intron | 30.0% |
| AAGGTTAAGTAAGGGTTAAC+TGG | - | chr1.1:14541061-14541080 | None:intergenic | 35.0% | |
| AATTTCAGGAGCTATTATGC+AGG | + | chr1.1:14542821-14542840 | MS.gene31836:intron | 35.0% | |
| ACATATAGAGAGAAAAGGCT+TGG | - | chr1.1:14540802-14540821 | None:intergenic | 35.0% | |
| ACCAACTAATTGAACTCAAG+TGG | - | chr1.1:14541373-14541392 | None:intergenic | 35.0% | |
| ACCACTTGAGTTCAATTAGT+TGG | + | chr1.1:14541369-14541388 | MS.gene31836:intron | 35.0% | |
| AGGTTAAGTAAGGGTTAACT+GGG | - | chr1.1:14541060-14541079 | None:intergenic | 35.0% | |
| ATAATGAGGAGGTAAAATCC+AGG | - | chr1.1:14542849-14542868 | None:intergenic | 35.0% | |
| CATTGAAGAACTTTCTATGG+TGG | + | chr1.1:14540728-14540747 | MS.gene31836:CDS | 35.0% | |
| CGTTCTCATTGAAAGAATAC+GGG | - | chr1.1:14541518-14541537 | None:intergenic | 35.0% | |
| CTCTTATCCCGATAATCTAA+GGG | - | chr1.1:14541226-14541245 | None:intergenic | 35.0% | |
| GTTAAATGGTCGTAGATTGA+CGG | - | chr1.1:14542177-14542196 | None:intergenic | 35.0% | |
| TAATGAGGAGGTAAAATCCA+GGG | - | chr1.1:14542848-14542867 | None:intergenic | 35.0% | |
| TATTCAGTTCTGCATGTTCT+TGG | + | chr1.1:14540822-14540841 | MS.gene31836:CDS | 35.0% | |
| TCTCTTATCCCGATAATCTA+AGG | - | chr1.1:14541227-14541246 | None:intergenic | 35.0% | |
| TTAATATCAACTCGGTCCAA+CGG | - | chr1.1:14542308-14542327 | None:intergenic | 35.0% | |
| TTATCGGGATAAGAGAACTT+TGG | + | chr1.1:14541231-14541250 | MS.gene31836:intron | 35.0% | |
| TTCCAATCTCTGCAATCAAA+CGG | - | chr1.1:14541803-14541822 | None:intergenic | 35.0% | |
| ! | GCTTCATGGTTTTCTTCAAT+TGG | - | chr1.1:14540765-14540784 | None:intergenic | 35.0% |
| AAAATACGAGGGTTTACCGT+TGG | + | chr1.1:14542289-14542308 | MS.gene31836:intron | 40.0% | |
| ACCAAGGGTTATAAGTTAGG+TGG | + | chr1.1:14541633-14541652 | MS.gene31836:intron | 40.0% | |
| ACCACCTAACTTATAACCCT+TGG | - | chr1.1:14541637-14541656 | None:intergenic | 40.0% | |
| AGAAAAAATTGGGCCAGCAA+TGG | + | chr1.1:14540938-14540957 | MS.gene31836:intron | 40.0% | |
| GAGATCGTCAAAAGGTGAAT+CGG | - | chr1.1:14541337-14541356 | None:intergenic | 40.0% | |
| GTTACATTAAAACCGTGGCA+TGG | + | chr1.1:14542931-14542950 | MS.gene31836:CDS | 40.0% | |
| GTTAGGCTATGATCCAAGTA+TGG | + | chr1.1:14541263-14541282 | MS.gene31836:intron | 40.0% | |
| TATAGAGAGAAAAGGCTTGG+TGG | - | chr1.1:14540799-14540818 | None:intergenic | 40.0% | |
| TGTGCACATCTCAAATGAGA+CGG | - | chr1.1:14542572-14542591 | None:intergenic | 40.0% | |
| TTAAGTAAGGGTTAACTGGG+TGG | - | chr1.1:14541057-14541076 | None:intergenic | 40.0% | |
| ! | ACGGTAAACCCTCGTATTTT+TGG | - | chr1.1:14542289-14542308 | None:intergenic | 40.0% |
| ! | ATAGAGAGAAAAGGCTTGGT+GGG | - | chr1.1:14540798-14540817 | None:intergenic | 40.0% |
| ! | TTGAAACTGGAAGTAACGGA+AGG | + | chr1.1:14541871-14541890 | MS.gene31836:CDS | 40.0% |
| CAGTTCTGCATGTTCTTGGT+AGG | + | chr1.1:14540826-14540845 | MS.gene31836:intron | 45.0% | |
| CATTAAAACCGTGGCATGGA+TGG | + | chr1.1:14542935-14542954 | MS.gene31836:CDS | 45.0% | |
| CTCCGTTTGATTGCAGAGAT+TGG | + | chr1.1:14541798-14541817 | MS.gene31836:intron | 45.0% | |
| GATGAAATCCATCCATGCCA+CGG | - | chr1.1:14542946-14542965 | None:intergenic | 45.0% | |
| GTTAACGCGAGATCGTCAAA+AGG | - | chr1.1:14541345-14541364 | None:intergenic | 45.0% | |
| TCACCTTGTGAGCCAAACAA+AGG | - | chr1.1:14541929-14541948 | None:intergenic | 45.0% | |
| TGTCTCAAAACAGCCATTGC+TGG | - | chr1.1:14540954-14540973 | None:intergenic | 45.0% | |
| !! | ACGGAAGGCATTGCAAAGAA+AGG | + | chr1.1:14541886-14541905 | MS.gene31836:CDS | 45.0% |
| !! | CGGAAGGCATTGCAAAGAAA+GGG | + | chr1.1:14541887-14541906 | MS.gene31836:CDS | 45.0% |
| !! | TAGAGAGAAAAGGCTTGGTG+GGG | - | chr1.1:14540797-14540816 | None:intergenic | 45.0% |
| !! | AATATTTATACTTATATATA+GGG | - | chr1.1:14541955-14541974 | None:intergenic | 5.0% |
| !! | TAATATTTATACTTATATAT+AGG | - | chr1.1:14541956-14541975 | None:intergenic | 5.0% |
| !!! | AATTTTTAAATATGATTAAT+TGG | + | chr1.1:14541745-14541764 | MS.gene31836:intron | 5.0% |
| !!! | TATTAATTTTTAGAAATTTT+AGG | + | chr1.1:14543242-14543261 | MS.gene31836:intron | 5.0% |
| GAAAGGGTCTAGCTGCAGTA+AGG | + | chr1.1:14541903-14541922 | MS.gene31836:CDS | 50.0% | |
| GCTGCAGTAAGGCCTTTGTT+TGG | + | chr1.1:14541914-14541933 | MS.gene31836:CDS | 50.0% | |
| ! | AGGCCTTTGTTTGGCTCACA+AGG | + | chr1.1:14541923-14541942 | MS.gene31836:CDS | 50.0% |
| GGAGCTATTATGCAGGACCC+TGG | + | chr1.1:14542828-14542847 | MS.gene31836:intron | 55.0% | |
| TGGGGATGTGAGCAGCTTCA+TGG | - | chr1.1:14540779-14540798 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 14540699 | 14543269 | 14540699 | ID=MS.gene31836 |
| chr1.1 | mRNA | 14540699 | 14543269 | 14540699 | ID=MS.gene31836.t1;Parent=MS.gene31836 |
| chr1.1 | exon | 14540699 | 14540843 | 14540699 | ID=MS.gene31836.t1.exon1;Parent=MS.gene31836.t1 |
| chr1.1 | CDS | 14540699 | 14540843 | 14540699 | ID=cds.MS.gene31836.t1;Parent=MS.gene31836.t1 |
| chr1.1 | exon | 14540940 | 14540995 | 14540940 | ID=MS.gene31836.t1.exon2;Parent=MS.gene31836.t1 |
| chr1.1 | CDS | 14540940 | 14540995 | 14540940 | ID=cds.MS.gene31836.t1;Parent=MS.gene31836.t1 |
| chr1.1 | exon | 14541814 | 14541944 | 14541814 | ID=MS.gene31836.t1.exon3;Parent=MS.gene31836.t1 |
| chr1.1 | CDS | 14541814 | 14541944 | 14541814 | ID=cds.MS.gene31836.t1;Parent=MS.gene31836.t1 |
| chr1.1 | exon | 14542843 | 14542978 | 14542843 | ID=MS.gene31836.t1.exon4;Parent=MS.gene31836.t1 |
| chr1.1 | CDS | 14542843 | 14542978 | 14542843 | ID=cds.MS.gene31836.t1;Parent=MS.gene31836.t1 |
| chr1.1 | exon | 14543264 | 14543269 | 14543264 | ID=MS.gene31836.t1.exon5;Parent=MS.gene31836.t1 |
| chr1.1 | CDS | 14543264 | 14543269 | 14543264 | ID=cds.MS.gene31836.t1;Parent=MS.gene31836.t1 |
| Gene Sequence |
| Protein sequence |
