AlfalfaGEDB | MS.gene054147

M. sativa cultivar XinJiangDaYe / MS.gene054147

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005319 GO:0005575 GO:0005737 GO:0006810 GO:0006869 GO:0008150 GO:0009987 GO:0016043 GO:0051179 GO:0051234 GO:0061024 GO:0071702 GO:0071840 GO:0110165 GO:0120009 GO:0120013
PFAM: PF08718.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054147.t1	KEH40440.1	97.4	156	4	0	1	156	9	164	7.30E-79	303.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054147.t1	Q6NLQ3	53.5	155	71	1	2	156	11	164	1.2e-40	167.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054147.t1	A0A072VFT0	97.4	156	4	0	1	156	9	164	5.3e-79	303.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04926	MS.gene054147	0.806901	6.57E-50	-1.69E-46
MS.gene049549	MS.gene054147	0.810719	1.00E-50	-1.69E-46
MS.gene052211	MS.gene054147	0.807879	4.07E-50	-1.69E-46
MS.gene05240	MS.gene054147	0.829969	3.82E-55	-1.69E-46
MS.gene053406	MS.gene054147	0.818381	2.02E-52	-1.69E-46
MS.gene054138	MS.gene054147	0.801883	7.30E-49	-1.69E-46
MS.gene054146	MS.gene054147	0.83677	7.70E-57	-1.69E-46
MS.gene054147	MS.gene054277	0.808911	2.45E-50	-1.69E-46
MS.gene054147	MS.gene054742	0.831749	1.40E-55	-1.69E-46
MS.gene054147	MS.gene055601	0.801321	9.51E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054147.t1	MTR_1g028970	97.436	156	4	0	1	156	9	164	1.61e-110	311
MS.gene054147.t1	MTR_1g028970	97.436	156	4	0	1	156	9	164	5.86e-110	311
MS.gene054147.t1	MTR_1g028970	97.436	156	4	0	1	156	9	164	6.31e-110	311
MS.gene054147.t1	MTR_1g028960	91.026	156	14	0	1	156	8	163	1.11e-100	288
MS.gene054147.t1	MTR_3g090530	68.987	158	46	3	1	156	7	163	5.48e-75	222
MS.gene054147.t1	MTR_3g090530	68.987	158	46	3	1	156	7	163	7.94e-74	220
MS.gene054147.t1	MTR_3g090530	68.987	158	46	3	1	156	7	163	1.69e-73	219
MS.gene054147.t1	MTR_3g090530	64.130	92	32	1	66	156	7	98	1.06e-37	125
MS.gene054147.t1	MTR_3g090530	64.130	92	32	1	66	156	7	98	8.57e-37	124
MS.gene054147.t1	MTR_3g090530	64.130	92	32	1	66	156	7	98	1.12e-36	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene054147.t1	AT1G21360	53.548	155	71	1	2	156	11	164	6.67e-55	171
MS.gene054147.t1	AT1G21360	53.548	155	71	1	2	156	11	164	9.67e-55	172
MS.gene054147.t1	AT3G21260	52.500	160	71	2	2	156	15	174	1.04e-50	162
MS.gene054147.t1	AT1G21360	54.902	102	46	0	55	156	1	102	3.64e-34	117
MS.gene054147.t1	AT3G21260	55.056	89	40	0	68	156	2	90	2.59e-29	105
MS.gene054147.t1	AT3G21260	54.118	85	39	0	72	156	1	85	1.42e-27	100
MS.gene054147.t1	AT2G33470	36.508	126	80	0	28	153	19	144	5.75e-27	100
MS.gene054147.t1	AT2G33470	36.508	126	80	0	28	153	19	144	5.75e-27	100

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Find 33 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACATATAGAGAGAAAAGGCT+TGG	0.544110	1.3:-15030069	None:intergenic
ACCAAATTTAGATTCGTTGT+TGG	0.382610	1.3:-15031111	None:intergenic
ACGGAAGGCATTGCAAAGAA+AGG	0.507034	1.3:+15031156	MS.gene054147:CDS
AGATGTGTATCAAAATATCA+AGG	0.576462	1.3:+15030244	MS.gene054147:CDS
AGGCCTTTGTTTGGCTCACA+AGG	0.523024	1.3:+15031193	MS.gene054147:CDS
ATAATGAGGAGGTAAAATCC+AGG	0.549318	1.3:-15032120	None:intergenic
ATAGAGAGAAAAGGCTTGGT+GGG	0.506837	1.3:-15030065	None:intergenic
ATGAAGTTACATTAAAACCG+TGG	0.682056	1.3:+15032200	MS.gene054147:CDS
CAATGATCCTGAAAAGAAAA+TGG	0.314820	1.3:+15032156	MS.gene054147:CDS
CATTAAAACCGTGGCATGGA+TGG	0.470378	1.3:+15032209	MS.gene054147:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCAAATTTAGATTCGTTGT+TGG	-	chr1.3:15031114-15031133	None:intergenic	30.0%
ATGAAGTTACATTAAAACCG+TGG	+	chr1.3:15032200-15032219	MS.gene054147:CDS	30.0%
ATGTTAACCCTTAGATTATC+GGG	+	chr1.3:15030486-15030505	MS.gene054147:intron	30.0%
CAATGATCCTGAAAAGAAAA+TGG	+	chr1.3:15032156-15032175	MS.gene054147:CDS	30.0%
CATTAAGAGAAGGTTAAGTA+AGG	-	chr1.3:15030340-15030359	None:intergenic	30.0%
GAAACTTACCAAAAATACGA+GGG	+	chr1.3:15031552-15031571	MS.gene054147:intron	30.0%
GATATTGAAACTGGAAGTAA+CGG	+	chr1.3:15031137-15031156	MS.gene054147:CDS	30.0%
GTGAATGTAAATAGAGAGAA+TGG	-	chr1.3:15030832-15030851	None:intergenic	30.0%
TCCAACAACGAATCTAAATT+TGG	+	chr1.3:15031110-15031129	MS.gene054147:CDS	30.0%
TCGTTCTCATTGAAAGAATA+CGG	-	chr1.3:15030789-15030808	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	15029969	15032543	15029969	ID=MS.gene054147
chr1.3	mRNA	15029969	15032543	15029969	ID=MS.gene054147.t1;Parent=MS.gene054147
chr1.3	exon	15029969	15030113	15029969	ID=MS.gene054147.t1.exon1;Parent=MS.gene054147.t1
chr1.3	CDS	15029969	15030113	15029969	ID=cds.MS.gene054147.t1;Parent=MS.gene054147.t1
chr1.3	exon	15030210	15030265	15030210	ID=MS.gene054147.t1.exon2;Parent=MS.gene054147.t1
chr1.3	CDS	15030210	15030265	15030210	ID=cds.MS.gene054147.t1;Parent=MS.gene054147.t1
chr1.3	exon	15031084	15031214	15031084	ID=MS.gene054147.t1.exon3;Parent=MS.gene054147.t1
chr1.3	CDS	15031084	15031214	15031084	ID=cds.MS.gene054147.t1;Parent=MS.gene054147.t1
chr1.3	exon	15032117	15032252	15032117	ID=MS.gene054147.t1.exon4;Parent=MS.gene054147.t1
chr1.3	CDS	15032117	15032252	15032117	ID=cds.MS.gene054147.t1;Parent=MS.gene054147.t1
chr1.3	exon	15032538	15032543	15032538	ID=MS.gene054147.t1.exon5;Parent=MS.gene054147.t1
chr1.3	CDS	15032538	15032543	15032538	ID=cds.MS.gene054147.t1;Parent=MS.gene054147.t1

Gene Sequence

>MS.gene054147

ATGGAGAAGAAATCAGAGATAAGTTGTGTCATTGAAGAACTTTCTATGGTGGTAATAGTTAAACCAATTGAAGAAAACCATGAAGCTGCTCACATCCCCACCAAGCCTTTTCTCTCTATATGTTATTCAGTTCTGCATGTTCTTGGTAGGTTAACTTTCTAACTTCAAATCTTTATTTATGTTCAAAGTTTGATGTGTGTTTAAACATTTATATTAACACATTGTTACTACGTGTAAACAGAAAAAATTGGGCCAACAATGGCTGTTTTGAGACAAGATGTGTATCAAAATATCAAGGTACAAAGAAAATCCATAGCTAAGTCTTTCAATTCAGCTGATTAGTTAATTATATTAACCACCCAGTTAACCCTTACTTAACCTTCTCTTAATGCATTTTTTCATAGTAAAAATGTTAGGGATTATATATGGTAGATGCCAAGATTTAAACTCTAGATCTCCTATAACTACTTAATAGACGATTGCAAGAAAAGATTTTAGAGATCTCTACAATTTTTTTATGTTAACCCTTAGATTATCGGGATAAGAGAACTTTGGTAATTTGAAGTTAGGCTATGATCCAAGTATGGTCTCATAAAAAATTGTTCAATCCAAAAATTGAACTCGAGTTCTTTCAACCGATTCACCTTTTGACGATCTCGCGTTAACTTTAACCACTTGAGTTCAATCAGTTGGTTTAGAGATCTCTTCAATGACATCATAACTACAATTGAGGCTATATTTTTCCATAATATCAAAGTTATGCCTATGCAACAGCAATTTAGAAACTATCGTTGATCTAATTTATAAGTTAAGTAGCCCGTATTCTTTCAATGAGAACGAGAATGATTTTATCTCTCACTCCATTCTCTCTATTTACATTCACCAATGATCTATAAAGTTTTTCTGAATAAGAAGAATTTGAACATAAAAGTTAACCAAGGGTTATAAGTTAGGTGGTTAATAAATTAAGGAAACACCTTCCCTTTACATTATATAATATGGGGATTTTTTGTATATTTATTATAAGACTTTCATTGTGTACTTCAAATTTTTAAATATGATTAATTGGTCAACTACCAATGATTAGTTGTGTATTAAACTCCGTTTGATTGCAGAGATTGGAACTAATGCATGAATCAAATCCAACAACGAATCTAAATTTGGTAGAGATATTGAAACTGGAAGTAACGGAAGGCATTGCAAAGAAAGGGTCTAGCTGCAGTAAGGCCTTTGTTTGGCTCACAAGGTGATATCCCTATATATAAGTATAAATATTAACCAAAAAAATATCTCAAAATAAGTGTCATTTTATGTTTTCAATGTGACATTAATAATTTTATTTCAATAATTAATACTTCAAAATTTATGTATATCATTCTCAATTTCATTATGAGTTTGATGCTGCCCAAAACAACTTTAAACACATAACTAATTAATTTAGAATGTTTTGATTTGTTGTGTGTTCAAAATTGTTTTAGACCGTCAATCTACGACCATTTAACTCTTTCATTATACTCTTAATTGTTAATAAGAATAAATTTATCAAACAAACTATTATGTGGGAACAAAAATAATATTTTATTGAAACTTACCAAAAATACGAGGGTTTACCGTTGGACCGAGTTGATATTAAAAATCCTCAATTATTGTACTTTTCCATTTATGTTAAATTTTTCTTATTGTGTTTGAAAGTAATAATCGACATGCGAGACATAGTAGAAATTAAAAATCCTCAATTTTTCTTATTGAGTGTATAGACTTTTTTGAGAGGAGAGTGTATAGACTTTTGTAACTCATGATGAGTAGAAATTTCAAATAGAATAGTACTACTCTATTTTATTCGTCAACTTCATTCGTCTCGTACTATATATCTACCGTCTCATTTGAGATGTGCACATTTCTTAAGAAAATAATTATTCGTACAATTTTTTAATTCAGGTTTACTACATTCTTGTAATTAAACTGTAACCAAAAAAAAAAAATCTTGTAATTAACTACTTTAATAAATAAGGGTAATATTATTAAAAAAATGAATAAATATTATATTTGTATTATAAAATAATAACGAATAATTTGAATATAAATATTTCAAATGAGCACATAATATACCAAAGAAAAAATATCTTAATTTCAGGAGCTATTATGCAGGACCCTGGATTTTACCTCCTCATTATTACAAATACTATCCAATGATCCTGAAAAGAAAATGGAGAAAGTGGTTGAAGAATCATATGAAGTTACATTAAAACCGTGGCATGGATGGATTTCATCAACTGCTGTCAGAGTACTAATCACGTTTTCTTTATTTTTTTTCCTTTCAATTTTCAATCAGTTTTATGTTATAGATTAATTTTGCTTGCTAAATATCGTATATCTTTTTTTTTTAGGGCAGATAACGTATATCTTGATAATCACATATTCTTGATTATATCACACTAGAATATTTATTTATTATAATCTCTACTTTTTTTAGAGATTATAATAAATAAATAAAGTTATTTTTTGCCAATCTAATTTCAGTCATTACTTAACACATTCTATTTATTTTATTAATTTTTAGAAATTTTAGGATTAG

Protein sequence

>MS.gene054147.t1

MEKKSEISCVIEELSMVVIVKPIEENHEAAHIPTKPFLSICYSVLHVLEKIGPTMAVLRQDVYQNIKRLELMHESNPTTNLNLVEILKLEVTEGIAKKGSSCSKAFVWLTRTLDFTSSLLQILSNDPEKKMEKVVEESYEVTLKPWHGWISSTAVRD