Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054147.t1 | KEH40440.1 | 97.4 | 156 | 4 | 0 | 1 | 156 | 9 | 164 | 7.30E-79 | 303.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054147.t1 | Q6NLQ3 | 53.5 | 155 | 71 | 1 | 2 | 156 | 11 | 164 | 1.2e-40 | 167.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054147.t1 | A0A072VFT0 | 97.4 | 156 | 4 | 0 | 1 | 156 | 9 | 164 | 5.3e-79 | 303.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04926 | MS.gene054147 | 0.806901 | 6.57E-50 | -1.69E-46 |
| MS.gene049549 | MS.gene054147 | 0.810719 | 1.00E-50 | -1.69E-46 |
| MS.gene052211 | MS.gene054147 | 0.807879 | 4.07E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene054147 | 0.829969 | 3.82E-55 | -1.69E-46 |
| MS.gene053406 | MS.gene054147 | 0.818381 | 2.02E-52 | -1.69E-46 |
| MS.gene054138 | MS.gene054147 | 0.801883 | 7.30E-49 | -1.69E-46 |
| MS.gene054146 | MS.gene054147 | 0.83677 | 7.70E-57 | -1.69E-46 |
| MS.gene054147 | MS.gene054277 | 0.808911 | 2.45E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene054742 | 0.831749 | 1.40E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene055601 | 0.801321 | 9.51E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene056330 | 0.802483 | 5.49E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene056920 | 0.818898 | 1.54E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene060087 | 0.836956 | 6.91E-57 | -1.69E-46 |
| MS.gene054147 | MS.gene063988 | 0.820204 | 7.76E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene065466 | 0.801996 | 6.92E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene065724 | 0.811247 | 7.70E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene066417 | 0.809358 | 1.97E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene066602 | 0.831089 | 2.03E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene066937 | 0.829951 | 3.86E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene06756 | 0.829042 | 6.42E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene070947 | 0.816285 | 5.98E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene073526 | 0.823828 | 1.12E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene073870 | 0.801617 | 8.27E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene22567 | 0.80857 | 2.90E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene23503 | 0.811077 | 8.38E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene25652 | 0.809408 | 1.92E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene26289 | 0.802529 | 5.37E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene26294 | 0.825803 | 3.84E-54 | -1.69E-46 |
| MS.gene054147 | MS.gene28395 | 0.811325 | 7.41E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene28548 | 0.835891 | 1.29E-56 | -1.69E-46 |
| MS.gene054147 | MS.gene30518 | 0.801083 | 1.06E-48 | -1.69E-46 |
| MS.gene054147 | MS.gene30519 | 0.80173 | 7.85E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene30666 | 0.805475 | 1.31E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene31836 | 0.879334 | 1.36E-69 | -1.69E-46 |
| MS.gene054147 | MS.gene35690 | 0.800202 | 1.61E-48 | -1.69E-46 |
| MS.gene054147 | MS.gene35951 | 0.819938 | 8.93E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene36326 | 0.809142 | 2.19E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene37747 | 0.8024 | 5.71E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene38435 | 0.808468 | 3.05E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene38687 | 0.8168 | 4.59E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene40846 | 0.801757 | 7.74E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene42005 | 0.810796 | 9.64E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene42084 | 0.816451 | 5.49E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene42096 | 0.821415 | 4.09E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene43874 | 0.843095 | 1.73E-58 | -1.69E-46 |
| MS.gene054147 | MS.gene44712 | 0.831081 | 2.04E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene44958 | 0.822417 | 2.40E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene45893 | 0.802484 | 5.49E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene47719 | 0.827788 | 1.29E-54 | -1.69E-46 |
| MS.gene054147 | MS.gene48023 | 0.83141 | 1.70E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene48169 | 0.812315 | 4.51E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene48806 | 0.808036 | 3.77E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene48807 | 0.822794 | 1.96E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene48885 | 0.849529 | 3.05E-60 | -1.69E-46 |
| MS.gene054147 | MS.gene50279 | 0.828754 | 7.54E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene54029 | 0.824025 | 1.01E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene55012 | 0.806279 | 8.88E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene56509 | 0.812002 | 5.28E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene57807 | 0.816492 | 5.38E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene58786 | 0.848933 | 4.47E-60 | -1.69E-46 |
| MS.gene054147 | MS.gene59920 | 0.826416 | 2.74E-54 | -1.69E-46 |
| MS.gene054147 | MS.gene65144 | 0.827631 | 1.41E-54 | -1.69E-46 |
| MS.gene054147 | MS.gene65833 | 0.81562 | 8.42E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene67371 | 0.814076 | 1.85E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene69966 | 0.810238 | 1.27E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene70226 | 0.801179 | 1.02E-48 | -1.69E-46 |
| MS.gene054147 | MS.gene71342 | 0.80478 | 1.83E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene75472 | 0.812014 | 5.25E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene76662 | 0.814637 | 1.39E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene76737 | 0.853084 | 3.02E-61 | -1.69E-46 |
| MS.gene054147 | MS.gene77033 | 0.811407 | 7.11E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene79220 | 0.803257 | 3.80E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene79630 | 0.813324 | 2.71E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene80293 | 0.832548 | 8.88E-56 | -1.69E-46 |
| MS.gene054147 | MS.gene80744 | 0.829574 | 4.77E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene81349 | 0.803199 | 3.91E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene81504 | 0.817734 | 2.83E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene81505 | 0.8214 | 4.12E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene81506 | 0.822877 | 1.87E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene81770 | 0.815552 | 8.72E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene81774 | 0.816744 | 4.72E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene82244 | 0.831934 | 1.26E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene82245 | 0.830836 | 2.35E-55 | -1.69E-46 |
| MS.gene054147 | MS.gene82857 | 0.817197 | 3.74E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene82858 | 0.814474 | 1.51E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene84143 | 0.827421 | 1.58E-54 | -1.69E-46 |
| MS.gene054147 | MS.gene84222 | 0.81676 | 4.68E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene85485 | 0.811559 | 6.59E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene85497 | 0.818145 | 2.28E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene85750 | 0.813095 | 3.04E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene87043 | 0.826515 | 2.60E-54 | -1.69E-46 |
| MS.gene054147 | MS.gene87055 | 0.807495 | 4.92E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene87346 | 0.820562 | 6.42E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene87450 | 0.802385 | 5.75E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene87750 | 0.81545 | 9.19E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene87751 | 0.803714 | 3.06E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene88597 | 0.805767 | 1.14E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene91221 | 0.803957 | 2.72E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene91222 | 0.803917 | 2.77E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene91226 | 0.835134 | 2.00E-56 | -1.69E-46 |
| MS.gene054147 | MS.gene94593 | 0.807315 | 5.37E-50 | -1.69E-46 |
| MS.gene054147 | MS.gene95804 | 0.815246 | 1.02E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene97019 | 0.804431 | 2.17E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene97024 | 0.816035 | 6.80E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene97182 | 0.811134 | 8.15E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene97335 | 0.801422 | 9.07E-49 | -1.69E-46 |
| MS.gene054147 | MS.gene98466 | 0.813061 | 3.10E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene98470 | 0.827954 | 1.18E-54 | -1.69E-46 |
| MS.gene054147 | MS.gene98474 | 0.835289 | 1.83E-56 | -1.69E-46 |
| MS.gene054147 | MS.gene98480 | 0.810874 | 9.28E-51 | -1.69E-46 |
| MS.gene054147 | MS.gene99062 | 0.822571 | 2.21E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054147.t1 | MTR_1g028970 | 97.436 | 156 | 4 | 0 | 1 | 156 | 9 | 164 | 1.61e-110 | 311 |
| MS.gene054147.t1 | MTR_1g028970 | 97.436 | 156 | 4 | 0 | 1 | 156 | 9 | 164 | 5.86e-110 | 311 |
| MS.gene054147.t1 | MTR_1g028970 | 97.436 | 156 | 4 | 0 | 1 | 156 | 9 | 164 | 6.31e-110 | 311 |
| MS.gene054147.t1 | MTR_1g028960 | 91.026 | 156 | 14 | 0 | 1 | 156 | 8 | 163 | 1.11e-100 | 288 |
| MS.gene054147.t1 | MTR_3g090530 | 68.987 | 158 | 46 | 3 | 1 | 156 | 7 | 163 | 5.48e-75 | 222 |
| MS.gene054147.t1 | MTR_3g090530 | 68.987 | 158 | 46 | 3 | 1 | 156 | 7 | 163 | 7.94e-74 | 220 |
| MS.gene054147.t1 | MTR_3g090530 | 68.987 | 158 | 46 | 3 | 1 | 156 | 7 | 163 | 1.69e-73 | 219 |
| MS.gene054147.t1 | MTR_3g090530 | 64.130 | 92 | 32 | 1 | 66 | 156 | 7 | 98 | 1.06e-37 | 125 |
| MS.gene054147.t1 | MTR_3g090530 | 64.130 | 92 | 32 | 1 | 66 | 156 | 7 | 98 | 8.57e-37 | 124 |
| MS.gene054147.t1 | MTR_3g090530 | 64.130 | 92 | 32 | 1 | 66 | 156 | 7 | 98 | 1.12e-36 | 124 |
| MS.gene054147.t1 | MTR_1g075710 | 37.500 | 128 | 80 | 0 | 28 | 155 | 19 | 146 | 2.36e-28 | 104 |
| MS.gene054147.t1 | MTR_1g041495 | 37.500 | 128 | 80 | 0 | 28 | 155 | 19 | 146 | 1.16e-27 | 102 |
| MS.gene054147.t1 | MTR_1g041495 | 37.500 | 128 | 80 | 0 | 28 | 155 | 19 | 146 | 1.42e-27 | 102 |
| MS.gene054147.t1 | MTR_1g075700 | 35.938 | 128 | 78 | 1 | 28 | 155 | 19 | 142 | 1.59e-23 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054147.t1 | AT1G21360 | 53.548 | 155 | 71 | 1 | 2 | 156 | 11 | 164 | 6.67e-55 | 171 |
| MS.gene054147.t1 | AT1G21360 | 53.548 | 155 | 71 | 1 | 2 | 156 | 11 | 164 | 9.67e-55 | 172 |
| MS.gene054147.t1 | AT3G21260 | 52.500 | 160 | 71 | 2 | 2 | 156 | 15 | 174 | 1.04e-50 | 162 |
| MS.gene054147.t1 | AT1G21360 | 54.902 | 102 | 46 | 0 | 55 | 156 | 1 | 102 | 3.64e-34 | 117 |
| MS.gene054147.t1 | AT3G21260 | 55.056 | 89 | 40 | 0 | 68 | 156 | 2 | 90 | 2.59e-29 | 105 |
| MS.gene054147.t1 | AT3G21260 | 54.118 | 85 | 39 | 0 | 72 | 156 | 1 | 85 | 1.42e-27 | 100 |
| MS.gene054147.t1 | AT2G33470 | 36.508 | 126 | 80 | 0 | 28 | 153 | 19 | 144 | 5.75e-27 | 100 |
| MS.gene054147.t1 | AT2G33470 | 36.508 | 126 | 80 | 0 | 28 | 153 | 19 | 144 | 5.75e-27 | 100 |
Find 33 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCAACAACGAATCTAAATT+TGG | 0.270826 | 1.3:+15031110 | MS.gene054147:CDS |
| TTTGGTAGAGATATTGAAAC+TGG | 0.311281 | 1.3:+15031128 | MS.gene054147:CDS |
| CAATGATCCTGAAAAGAAAA+TGG | 0.314820 | 1.3:+15032156 | MS.gene054147:CDS |
| TATTCAGTTCTGCATGTTCT+TGG | 0.321499 | 1.3:+15030092 | MS.gene054147:CDS |
| TGTCATTGAAGAACTTTCTA+TGG | 0.343601 | 1.3:+15029995 | MS.gene054147:CDS |
| ACCAAATTTAGATTCGTTGT+TGG | 0.382610 | 1.3:-15031111 | None:intergenic |
| TGGGGATGTGAGCAGCTTCA+TGG | 0.400980 | 1.3:-15030046 | None:intergenic |
| GCTGCAGTAAGGCCTTTGTT+TGG | 0.415497 | 1.3:+15031184 | MS.gene054147:CDS |
| TGTCTCAAAACAGCCATTGT+TGG | 0.436087 | 1.3:-15030221 | None:intergenic |
| CATTAAAACCGTGGCATGGA+TGG | 0.470378 | 1.3:+15032209 | MS.gene054147:CDS |
| TGAAAAGAAAATGGAGAAAG+TGG | 0.505804 | 1.3:+15032165 | MS.gene054147:CDS |
| ATAGAGAGAAAAGGCTTGGT+GGG | 0.506837 | 1.3:-15030065 | None:intergenic |
| ACGGAAGGCATTGCAAAGAA+AGG | 0.507034 | 1.3:+15031156 | MS.gene054147:CDS |
| GGATAGTATTTGTAATAATG+AGG | 0.508394 | 1.3:-15032134 | None:intergenic |
| AGGCCTTTGTTTGGCTCACA+AGG | 0.523024 | 1.3:+15031193 | MS.gene054147:CDS |
| CGGAAGGCATTGCAAAGAAA+GGG | 0.536447 | 1.3:+15031157 | MS.gene054147:CDS |
| GAATAACATATAGAGAGAAA+AGG | 0.539202 | 1.3:-15030074 | None:intergenic |
| GAAAGGGTCTAGCTGCAGTA+AGG | 0.541855 | 1.3:+15031173 | MS.gene054147:CDS |
| ACATATAGAGAGAAAAGGCT+TGG | 0.544110 | 1.3:-15030069 | None:intergenic |
| ATAATGAGGAGGTAAAATCC+AGG | 0.549318 | 1.3:-15032120 | None:intergenic |
| TATAGAGAGAAAAGGCTTGG+TGG | 0.564749 | 1.3:-15030066 | None:intergenic |
| GATATTGAAACTGGAAGTAA+CGG | 0.564790 | 1.3:+15031137 | MS.gene054147:CDS |
| GGAGCTATTATGCAGGACCC+TGG | 0.569550 | 1.3:+15032102 | MS.gene054147:intron |
| AGATGTGTATCAAAATATCA+AGG | 0.576462 | 1.3:+15030244 | MS.gene054147:CDS |
| CATTGAAGAACTTTCTATGG+TGG | 0.588939 | 1.3:+15029998 | MS.gene054147:CDS |
| GTTACATTAAAACCGTGGCA+TGG | 0.603420 | 1.3:+15032205 | MS.gene054147:CDS |
| GATGAAATCCATCCATGCCA+CGG | 0.603497 | 1.3:-15032217 | None:intergenic |
| TAATGAGGAGGTAAAATCCA+GGG | 0.624879 | 1.3:-15032119 | None:intergenic |
| TTGAAACTGGAAGTAACGGA+AGG | 0.637724 | 1.3:+15031141 | MS.gene054147:CDS |
| TCACCTTGTGAGCCAAACAA+AGG | 0.647841 | 1.3:-15031196 | None:intergenic |
| TAGTATTTGTAATAATGAGG+AGG | 0.660461 | 1.3:-15032131 | None:intergenic |
| ATGAAGTTACATTAAAACCG+TGG | 0.682056 | 1.3:+15032200 | MS.gene054147:CDS |
| TAGAGAGAAAAGGCTTGGTG+GGG | 0.682249 | 1.3:-15030064 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAACTACTTTAATAAATA+AGG | + | chr1.3:15031958-15031977 | MS.gene054147:intron | 10.0% |
| !! | TAAGAAAAATTTAACATAAA+TGG | - | chr1.3:15031628-15031647 | None:intergenic | 10.0% |
| !! | TTAACTACTTTAATAAATAA+GGG | + | chr1.3:15031959-15031978 | MS.gene054147:intron | 10.0% |
| !!! | AAATTAAGATATTTTTTCTT+TGG | - | chr1.3:15032080-15032099 | None:intergenic | 10.0% |
| !!! | ATTACAAGATTTTTTTTTTT+TGG | - | chr1.3:15031940-15031959 | None:intergenic | 10.0% |
| !! | AGAAAAAATATCTTAATTTC+AGG | + | chr1.3:15032081-15032100 | MS.gene054147:intron | 15.0% |
| !!! | ATCGTATATCTTTTTTTTTT+AGG | + | chr1.3:15032334-15032353 | MS.gene054147:intron | 15.0% |
| !!! | CTTATTTTGAGATATTTTTT+TGG | - | chr1.3:15031250-15031269 | None:intergenic | 15.0% |
| !!! | TCGTATATCTTTTTTTTTTA+GGG | + | chr1.3:15032335-15032354 | MS.gene054147:intron | 15.0% |
| !!! | TTTTCATAGTAAAAATGTTA+GGG | + | chr1.3:15030364-15030383 | MS.gene054147:intron | 15.0% |
| !!! | TTTTTCATAGTAAAAATGTT+AGG | + | chr1.3:15030363-15030382 | MS.gene054147:intron | 15.0% |
| !! | AAAACTGATTGAAAATTGAA+AGG | - | chr1.3:15032285-15032304 | None:intergenic | 20.0% |
| !! | AAAATGTTAGGGATTATATA+TGG | + | chr1.3:15030375-15030394 | MS.gene054147:intron | 20.0% |
| !! | AGAAAAACTTTATAGATCAT+TGG | - | chr1.3:15030854-15030873 | None:intergenic | 20.0% |
| !! | AGTATAATGAAAGAGTTAAA+TGG | - | chr1.3:15031465-15031484 | None:intergenic | 20.0% |
| !! | CCCATATTATATAATGTAAA+GGG | - | chr1.3:15030952-15030971 | None:intergenic | 20.0% |
| !! | CCCTTTACATTATATAATAT+GGG | + | chr1.3:15030949-15030968 | MS.gene054147:intron | 20.0% |
| !! | CCTTTACATTATATAATATG+GGG | + | chr1.3:15030950-15030969 | MS.gene054147:intron | 20.0% |
| !! | TATCAAACAAACTATTATGT+GGG | + | chr1.3:15031509-15031528 | MS.gene054147:intron | 20.0% |
| !! | TATTATATAATGTAAAGGGA+AGG | - | chr1.3:15030948-15030967 | None:intergenic | 20.0% |
| !! | TCCCTTTACATTATATAATA+TGG | + | chr1.3:15030948-15030967 | MS.gene054147:intron | 20.0% |
| !! | TTATCAAACAAACTATTATG+TGG | + | chr1.3:15031508-15031527 | MS.gene054147:intron | 20.0% |
| !! | TTTAATACACAACTAATCAT+TGG | - | chr1.3:15031048-15031067 | None:intergenic | 20.0% |
| !!! | TATGTGTTTAAAGTTGTTTT+GGG | - | chr1.3:15031376-15031395 | None:intergenic | 20.0% |
| !!! | TTATGTGTTTAAAGTTGTTT+TGG | - | chr1.3:15031377-15031396 | None:intergenic | 20.0% |
| !!! | TTCGTACAATTTTTTAATTC+AGG | + | chr1.3:15031885-15031904 | MS.gene054147:intron | 20.0% |
| ! | ACACTCAATAAGAAAAATTG+AGG | - | chr1.3:15031702-15031721 | None:intergenic | 25.0% |
| ! | ACGTGTAAACAGAAAAAATT+GGG | + | chr1.3:15030198-15030217 | MS.gene054147:intron | 25.0% |
| ! | AGATGTGTATCAAAATATCA+AGG | + | chr1.3:15030244-15030263 | MS.gene054147:CDS | 25.0% |
| ! | AGTAATGACTGAAATTAGAT+TGG | - | chr1.3:15032477-15032496 | None:intergenic | 25.0% |
| ! | ATCGTCTATTAAGTAGTTAT+AGG | - | chr1.3:15030429-15030448 | None:intergenic | 25.0% |
| ! | ATTAAGAGAAGGTTAAGTAA+GGG | - | chr1.3:15030339-15030358 | None:intergenic | 25.0% |
| ! | CCCCATATTATATAATGTAA+AGG | - | chr1.3:15030953-15030972 | None:intergenic | 25.0% |
| ! | GAATAACATATAGAGAGAAA+AGG | - | chr1.3:15030077-15030096 | None:intergenic | 25.0% |
| ! | GGATAGTATTTGTAATAATG+AGG | - | chr1.3:15032137-15032156 | None:intergenic | 25.0% |
| ! | GTTAGGTGGTTAATAAATTA+AGG | + | chr1.3:15030917-15030936 | MS.gene054147:intron | 25.0% |
| ! | TACGTGTAAACAGAAAAAAT+TGG | + | chr1.3:15030197-15030216 | MS.gene054147:intron | 25.0% |
| ! | TAGGCATAACTTTGATATTA+TGG | - | chr1.3:15030715-15030734 | None:intergenic | 25.0% |
| ! | TAGTATTTGTAATAATGAGG+AGG | - | chr1.3:15032134-15032153 | None:intergenic | 25.0% |
| ! | TATGTTAACCCTTAGATTAT+CGG | + | chr1.3:15030485-15030504 | MS.gene054147:intron | 25.0% |
| ! | TGAAAAAATGCATTAAGAGA+AGG | - | chr1.3:15030350-15030369 | None:intergenic | 25.0% |
| ! | TGAACATAAAAGTTAACCAA+GGG | + | chr1.3:15030888-15030907 | MS.gene054147:intron | 25.0% |
| ! | TTGAACATAAAAGTTAACCA+AGG | + | chr1.3:15030887-15030906 | MS.gene054147:intron | 25.0% |
| !! | AACTTTGGTAATTTGAAGTT+AGG | + | chr1.3:15030516-15030535 | MS.gene054147:intron | 25.0% |
| !! | ATGGAAAAGTACAATAATTG+AGG | - | chr1.3:15031609-15031628 | None:intergenic | 25.0% |
| !! | GAGGATTTTTAATATCAACT+CGG | - | chr1.3:15031590-15031609 | None:intergenic | 25.0% |
| !!! | ATTTTTTATGAGACCATACT+TGG | - | chr1.3:15030549-15030568 | None:intergenic | 25.0% |
| ACCAAATTTAGATTCGTTGT+TGG | - | chr1.3:15031114-15031133 | None:intergenic | 30.0% | |
| ATGAAGTTACATTAAAACCG+TGG | + | chr1.3:15032200-15032219 | MS.gene054147:CDS | 30.0% | |
| ATGTTAACCCTTAGATTATC+GGG | + | chr1.3:15030486-15030505 | MS.gene054147:intron | 30.0% | |
| CAATGATCCTGAAAAGAAAA+TGG | + | chr1.3:15032156-15032175 | MS.gene054147:CDS | 30.0% | |
| CATTAAGAGAAGGTTAAGTA+AGG | - | chr1.3:15030340-15030359 | None:intergenic | 30.0% | |
| GAAACTTACCAAAAATACGA+GGG | + | chr1.3:15031552-15031571 | MS.gene054147:intron | 30.0% | |
| GATATTGAAACTGGAAGTAA+CGG | + | chr1.3:15031137-15031156 | MS.gene054147:CDS | 30.0% | |
| GTGAATGTAAATAGAGAGAA+TGG | - | chr1.3:15030832-15030851 | None:intergenic | 30.0% | |
| TCCAACAACGAATCTAAATT+TGG | + | chr1.3:15031110-15031129 | MS.gene054147:CDS | 30.0% | |
| TCGTTCTCATTGAAAGAATA+CGG | - | chr1.3:15030789-15030808 | None:intergenic | 30.0% | |
| TGAAAAGAAAATGGAGAAAG+TGG | + | chr1.3:15032165-15032184 | MS.gene054147:CDS | 30.0% | |
| TGAAACTTACCAAAAATACG+AGG | + | chr1.3:15031551-15031570 | MS.gene054147:intron | 30.0% | |
| TGAATTGAAAGACTTAGCTA+TGG | - | chr1.3:15030282-15030301 | None:intergenic | 30.0% | |
| TGACATCATAACTACAATTG+AGG | + | chr1.3:15030679-15030698 | MS.gene054147:intron | 30.0% | |
| TGTCATTGAAGAACTTTCTA+TGG | + | chr1.3:15029995-15030014 | MS.gene054147:CDS | 30.0% | |
| TTAACCAAGGGTTATAAGTT+AGG | + | chr1.3:15030900-15030919 | MS.gene054147:intron | 30.0% | |
| TTTGGTAGAGATATTGAAAC+TGG | + | chr1.3:15031128-15031147 | MS.gene054147:CDS | 30.0% | |
| ! | AAGAACTCGAGTTCAATTTT+TGG | - | chr1.3:15030580-15030599 | None:intergenic | 30.0% |
| ! | ACTTTCTCCATTTTCTTTTC+AGG | - | chr1.3:15032166-15032185 | None:intergenic | 30.0% |
| ! | GAGATCTAGAGTTTAAATCT+TGG | - | chr1.3:15030407-15030426 | None:intergenic | 30.0% |
| ! | TTTCTAAATTGCTGTTGCAT+AGG | - | chr1.3:15030734-15030753 | None:intergenic | 30.0% |
| !! | CATTTTCTTTTCAGGATCAT+TGG | - | chr1.3:15032158-15032177 | None:intergenic | 30.0% |
| !!! | AGTGTATAGACTTTTTTGAG+AGG | + | chr1.3:15031717-15031736 | MS.gene054147:intron | 30.0% |
| AAGGTTAAGTAAGGGTTAAC+TGG | - | chr1.3:15030331-15030350 | None:intergenic | 35.0% | |
| AATTTCAGGAGCTATTATGC+AGG | + | chr1.3:15032095-15032114 | MS.gene054147:intron | 35.0% | |
| ACATATAGAGAGAAAAGGCT+TGG | - | chr1.3:15030072-15030091 | None:intergenic | 35.0% | |
| AGAAAAAATTGGGCCAACAA+TGG | + | chr1.3:15030208-15030227 | MS.gene054147:intron | 35.0% | |
| AGGTTAAGTAAGGGTTAACT+GGG | - | chr1.3:15030330-15030349 | None:intergenic | 35.0% | |
| ATAATGAGGAGGTAAAATCC+AGG | - | chr1.3:15032123-15032142 | None:intergenic | 35.0% | |
| CATTGAAGAACTTTCTATGG+TGG | + | chr1.3:15029998-15030017 | MS.gene054147:CDS | 35.0% | |
| CGTTCTCATTGAAAGAATAC+GGG | - | chr1.3:15030788-15030807 | None:intergenic | 35.0% | |
| CTCTTATCCCGATAATCTAA+GGG | - | chr1.3:15030496-15030515 | None:intergenic | 35.0% | |
| GTTAAATGGTCGTAGATTGA+CGG | - | chr1.3:15031451-15031470 | None:intergenic | 35.0% | |
| TAATGAGGAGGTAAAATCCA+GGG | - | chr1.3:15032122-15032141 | None:intergenic | 35.0% | |
| TATTCAGTTCTGCATGTTCT+TGG | + | chr1.3:15030092-15030111 | MS.gene054147:CDS | 35.0% | |
| TCTCTTATCCCGATAATCTA+AGG | - | chr1.3:15030497-15030516 | None:intergenic | 35.0% | |
| TTAATATCAACTCGGTCCAA+CGG | - | chr1.3:15031582-15031601 | None:intergenic | 35.0% | |
| TTATCGGGATAAGAGAACTT+TGG | + | chr1.3:15030501-15030520 | MS.gene054147:intron | 35.0% | |
| TTCCAATCTCTGCAATCAAA+CGG | - | chr1.3:15031073-15031092 | None:intergenic | 35.0% | |
| ! | GCTTCATGGTTTTCTTCAAT+TGG | - | chr1.3:15030035-15030054 | None:intergenic | 35.0% |
| AAAATACGAGGGTTTACCGT+TGG | + | chr1.3:15031563-15031582 | MS.gene054147:intron | 40.0% | |
| ACCAACTGATTGAACTCAAG+TGG | - | chr1.3:15030643-15030662 | None:intergenic | 40.0% | |
| ACCAAGGGTTATAAGTTAGG+TGG | + | chr1.3:15030903-15030922 | MS.gene054147:intron | 40.0% | |
| ACCACCTAACTTATAACCCT+TGG | - | chr1.3:15030907-15030926 | None:intergenic | 40.0% | |
| ACCACTTGAGTTCAATCAGT+TGG | + | chr1.3:15030639-15030658 | MS.gene054147:intron | 40.0% | |
| GAGATCGTCAAAAGGTGAAT+CGG | - | chr1.3:15030607-15030626 | None:intergenic | 40.0% | |
| GTTACATTAAAACCGTGGCA+TGG | + | chr1.3:15032205-15032224 | MS.gene054147:CDS | 40.0% | |
| GTTAGGCTATGATCCAAGTA+TGG | + | chr1.3:15030533-15030552 | MS.gene054147:intron | 40.0% | |
| TATAGAGAGAAAAGGCTTGG+TGG | - | chr1.3:15030069-15030088 | None:intergenic | 40.0% | |
| TGTCTCAAAACAGCCATTGT+TGG | - | chr1.3:15030224-15030243 | None:intergenic | 40.0% | |
| TGTGCACATCTCAAATGAGA+CGG | - | chr1.3:15031846-15031865 | None:intergenic | 40.0% | |
| TTAAGTAAGGGTTAACTGGG+TGG | - | chr1.3:15030327-15030346 | None:intergenic | 40.0% | |
| ! | ACGGTAAACCCTCGTATTTT+TGG | - | chr1.3:15031563-15031582 | None:intergenic | 40.0% |
| ! | ATAGAGAGAAAAGGCTTGGT+GGG | - | chr1.3:15030068-15030087 | None:intergenic | 40.0% |
| ! | TTGAAACTGGAAGTAACGGA+AGG | + | chr1.3:15031141-15031160 | MS.gene054147:CDS | 40.0% |
| CAGTTCTGCATGTTCTTGGT+AGG | + | chr1.3:15030096-15030115 | MS.gene054147:intron | 45.0% | |
| CATTAAAACCGTGGCATGGA+TGG | + | chr1.3:15032209-15032228 | MS.gene054147:CDS | 45.0% | |
| CTCCGTTTGATTGCAGAGAT+TGG | + | chr1.3:15031068-15031087 | MS.gene054147:intron | 45.0% | |
| GATGAAATCCATCCATGCCA+CGG | - | chr1.3:15032220-15032239 | None:intergenic | 45.0% | |
| GTTAACGCGAGATCGTCAAA+AGG | - | chr1.3:15030615-15030634 | None:intergenic | 45.0% | |
| TCACCTTGTGAGCCAAACAA+AGG | - | chr1.3:15031199-15031218 | None:intergenic | 45.0% | |
| !! | ACGGAAGGCATTGCAAAGAA+AGG | + | chr1.3:15031156-15031175 | MS.gene054147:CDS | 45.0% |
| !! | CGGAAGGCATTGCAAAGAAA+GGG | + | chr1.3:15031157-15031176 | MS.gene054147:CDS | 45.0% |
| !! | TAGAGAGAAAAGGCTTGGTG+GGG | - | chr1.3:15030067-15030086 | None:intergenic | 45.0% |
| !! | AATATTTATACTTATATATA+GGG | - | chr1.3:15031225-15031244 | None:intergenic | 5.0% |
| !! | TAATATTTATACTTATATAT+AGG | - | chr1.3:15031226-15031245 | None:intergenic | 5.0% |
| !!! | AATTTTTAAATATGATTAAT+TGG | + | chr1.3:15031015-15031034 | MS.gene054147:intron | 5.0% |
| !!! | TATTAATTTTTAGAAATTTT+AGG | + | chr1.3:15032516-15032535 | MS.gene054147:intron | 5.0% |
| GAAAGGGTCTAGCTGCAGTA+AGG | + | chr1.3:15031173-15031192 | MS.gene054147:CDS | 50.0% | |
| GCTGCAGTAAGGCCTTTGTT+TGG | + | chr1.3:15031184-15031203 | MS.gene054147:CDS | 50.0% | |
| ! | AGGCCTTTGTTTGGCTCACA+AGG | + | chr1.3:15031193-15031212 | MS.gene054147:CDS | 50.0% |
| GGAGCTATTATGCAGGACCC+TGG | + | chr1.3:15032102-15032121 | MS.gene054147:intron | 55.0% | |
| TGGGGATGTGAGCAGCTTCA+TGG | - | chr1.3:15030049-15030068 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 15029969 | 15032543 | 15029969 | ID=MS.gene054147 |
| chr1.3 | mRNA | 15029969 | 15032543 | 15029969 | ID=MS.gene054147.t1;Parent=MS.gene054147 |
| chr1.3 | exon | 15029969 | 15030113 | 15029969 | ID=MS.gene054147.t1.exon1;Parent=MS.gene054147.t1 |
| chr1.3 | CDS | 15029969 | 15030113 | 15029969 | ID=cds.MS.gene054147.t1;Parent=MS.gene054147.t1 |
| chr1.3 | exon | 15030210 | 15030265 | 15030210 | ID=MS.gene054147.t1.exon2;Parent=MS.gene054147.t1 |
| chr1.3 | CDS | 15030210 | 15030265 | 15030210 | ID=cds.MS.gene054147.t1;Parent=MS.gene054147.t1 |
| chr1.3 | exon | 15031084 | 15031214 | 15031084 | ID=MS.gene054147.t1.exon3;Parent=MS.gene054147.t1 |
| chr1.3 | CDS | 15031084 | 15031214 | 15031084 | ID=cds.MS.gene054147.t1;Parent=MS.gene054147.t1 |
| chr1.3 | exon | 15032117 | 15032252 | 15032117 | ID=MS.gene054147.t1.exon4;Parent=MS.gene054147.t1 |
| chr1.3 | CDS | 15032117 | 15032252 | 15032117 | ID=cds.MS.gene054147.t1;Parent=MS.gene054147.t1 |
| chr1.3 | exon | 15032538 | 15032543 | 15032538 | ID=MS.gene054147.t1.exon5;Parent=MS.gene054147.t1 |
| chr1.3 | CDS | 15032538 | 15032543 | 15032538 | ID=cds.MS.gene054147.t1;Parent=MS.gene054147.t1 |
| Gene Sequence |
| Protein sequence |
