Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32135.t1 | XP_013468649.1 | 97.8 | 860 | 19 | 0 | 1 | 860 | 1 | 860 | 0.00E+00 | 1737.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32135.t1 | O53732 | 38.0 | 358 | 195 | 7 | 497 | 847 | 88 | 425 | 8.2e-56 | 220.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32135.t1 | A0A072VM29 | 97.8 | 860 | 19 | 0 | 1 | 860 | 1 | 860 | 0.0e+00 | 1737.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051860 | MS.gene32135 | 0.80615 | 9.46E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene32135 | -0.811757 | 5.97E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene32135 | 0.804165 | 2.46E-49 | -1.69E-46 |
| MS.gene052253 | MS.gene32135 | 0.818622 | 1.78E-52 | -1.69E-46 |
| MS.gene052255 | MS.gene32135 | 0.810003 | 1.43E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene32135 | 0.829005 | 6.56E-55 | -1.69E-46 |
| MS.gene054183 | MS.gene32135 | 0.803059 | 4.18E-49 | -1.69E-46 |
| MS.gene054719 | MS.gene32135 | 0.808463 | 3.06E-50 | -1.69E-46 |
| MS.gene05553 | MS.gene32135 | 0.809833 | 1.56E-50 | -1.69E-46 |
| MS.gene056723 | MS.gene32135 | 0.82237 | 2.46E-53 | -1.69E-46 |
| MS.gene057121 | MS.gene32135 | 0.81062 | 1.05E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene32135 | 0.833258 | 5.91E-56 | -1.69E-46 |
| MS.gene057823 | MS.gene32135 | 0.825472 | 4.60E-54 | -1.69E-46 |
| MS.gene058002 | MS.gene32135 | 0.846124 | 2.64E-59 | -1.69E-46 |
| MS.gene05811 | MS.gene32135 | 0.80812 | 3.62E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene32135 | 0.830276 | 3.22E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene32135 | 0.848627 | 5.43E-60 | -1.69E-46 |
| MS.gene059420 | MS.gene32135 | 0.828803 | 7.34E-55 | -1.69E-46 |
| MS.gene061049 | MS.gene32135 | 0.805226 | 1.48E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32135.t1 | MTR_1g073700 | 97.791 | 860 | 19 | 0 | 1 | 860 | 1 | 860 | 0.0 | 1757 |
| MS.gene32135.t1 | MTR_1g044520 | 68.409 | 861 | 222 | 6 | 1 | 854 | 1 | 818 | 0.0 | 1210 |
| MS.gene32135.t1 | MTR_3g104740 | 28.692 | 237 | 156 | 6 | 576 | 807 | 81 | 309 | 1.71e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32135.t1 | AT3G23510 | 74.739 | 863 | 213 | 4 | 1 | 860 | 1 | 861 | 0.0 | 1368 |
| MS.gene32135.t1 | AT3G23530 | 74.855 | 863 | 212 | 4 | 1 | 860 | 1 | 861 | 0.0 | 1363 |
| MS.gene32135.t1 | AT3G23470 | 67.982 | 456 | 143 | 2 | 406 | 858 | 25 | 480 | 0.0 | 662 |
| MS.gene32135.t1 | AT3G23470 | 67.982 | 456 | 143 | 2 | 406 | 858 | 25 | 480 | 0.0 | 662 |
| MS.gene32135.t1 | AT3G23470 | 67.991 | 453 | 142 | 2 | 409 | 858 | 1 | 453 | 0.0 | 659 |
| MS.gene32135.t1 | AT3G23480 | 66.591 | 443 | 145 | 3 | 409 | 850 | 1 | 441 | 0.0 | 619 |
| MS.gene32135.t1 | AT3G23480 | 61.674 | 454 | 146 | 6 | 409 | 858 | 1 | 430 | 0.0 | 560 |
| MS.gene32135.t1 | AT3G23480 | 61.985 | 413 | 130 | 5 | 450 | 858 | 4 | 393 | 1.81e-176 | 517 |
| MS.gene32135.t1 | AT3G23460 | 54.104 | 268 | 103 | 6 | 421 | 686 | 3 | 252 | 2.43e-83 | 270 |
| MS.gene32135.t1 | AT3G23460 | 72.368 | 76 | 21 | 0 | 779 | 854 | 209 | 284 | 3.24e-33 | 130 |
| MS.gene32135.t1 | AT4G33110 | 27.941 | 272 | 186 | 6 | 558 | 824 | 60 | 326 | 8.01e-26 | 110 |
| MS.gene32135.t1 | AT4G33110 | 27.941 | 272 | 186 | 6 | 558 | 824 | 60 | 326 | 8.01e-26 | 110 |
| MS.gene32135.t1 | AT4G33120 | 27.572 | 243 | 169 | 5 | 558 | 798 | 60 | 297 | 1.58e-22 | 100 |
Find 176 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACATACCTTCCAATAAAAT+TGG | 0.167387 | 1.2:+56829432 | None:intergenic |
| CTTGAGGTGTTACAGCTTAT+TGG | 0.173342 | 1.2:-56829534 | MS.gene32135:intron |
| TCTATTTGGTCATGCTCTTC+TGG | 0.188682 | 1.2:-56831575 | MS.gene32135:CDS |
| GACTCATTGCGATCCATATC+TGG | 0.215881 | 1.2:+56831835 | None:intergenic |
| ACCTGATGCTTTGAGATTAT+TGG | 0.222421 | 1.2:-56830753 | MS.gene32135:CDS |
| CTATCATATTTGTATGTCTT+TGG | 0.234916 | 1.2:+56827832 | None:intergenic |
| CAAGAAGGTACCATGTGTTT+AGG | 0.247042 | 1.2:+56829859 | None:intergenic |
| TTCCAATCTGTGGTTCTATT+TGG | 0.265113 | 1.2:-56831589 | MS.gene32135:CDS |
| TGATGGACTTCTTGTTCTTC+AGG | 0.266991 | 1.2:-56827635 | MS.gene32135:intron |
| CTCAAAGAATTCCATCATAT+TGG | 0.270898 | 1.2:+56832693 | None:intergenic |
| TGATTTGGACCTTGGTTTCA+TGG | 0.272691 | 1.2:-56835237 | MS.gene32135:CDS |
| ATTGCAGCTCATGGAATTCT+TGG | 0.274520 | 1.2:-56829907 | MS.gene32135:CDS |
| TATGATGAGAGAAGAATTAT+TGG | 0.288707 | 1.2:-56830716 | MS.gene32135:CDS |
| GACATCTGCAAAGTTCTTCA+TGG | 0.299126 | 1.2:-56828708 | MS.gene32135:CDS |
| AGTTAAAGATGTTGGCCTTC+AGG | 0.299847 | 1.2:-56828067 | MS.gene32135:intron |
| ATTTCATGAAGATGGATTAA+AGG | 0.305706 | 1.2:-56830077 | MS.gene32135:intron |
| CTAAACACATGGTACCTTCT+TGG | 0.311391 | 1.2:-56829858 | MS.gene32135:CDS |
| TTTGTGTTGCAGTAAAATTT+TGG | 0.315280 | 1.2:-56826970 | MS.gene32135:intron |
| GAATACATGGAAGAATTCTT+TGG | 0.321598 | 1.2:-56827682 | MS.gene32135:CDS |
| AAGAAGGTACCATGTGTTTA+GGG | 0.323024 | 1.2:+56829860 | None:intergenic |
| TTGGTTTCATGGTCTTCAAT+AGG | 0.325877 | 1.2:-56835226 | MS.gene32135:CDS |
| TTGGTTTCATCATCTGAAAA+AGG | 0.330464 | 1.2:-56830955 | MS.gene32135:intron |
| TTTGGTTTCAGCTTATGTTT+TGG | 0.332218 | 1.2:-56835342 | MS.gene32135:CDS |
| AAACATGAAATTCTTGAGAT+TGG | 0.333905 | 1.2:-56828192 | MS.gene32135:CDS |
| TGGAAAGTGTTGTACCCTTC+AGG | 0.338945 | 1.2:-56829887 | MS.gene32135:CDS |
| TAATATACCTCTGCCTTTCC+AGG | 0.339753 | 1.2:+56827065 | None:intergenic |
| ATGTTTACCTTTGAGGGAAC+TGG | 0.340227 | 1.2:-56829497 | MS.gene32135:CDS |
| CCTGATGCTTTGAGATTATT+GGG | 0.341009 | 1.2:-56830752 | MS.gene32135:CDS |
| TTTGCAGGATGTGTCGTTTA+CGG | 0.342934 | 1.2:-56830827 | MS.gene32135:intron |
| TGGTTTCATGGTCTTCAATA+GGG | 0.343252 | 1.2:-56835225 | MS.gene32135:intron |
| TGTTTATCTCTGCAGCTCTT+TGG | 0.349442 | 1.2:-56831404 | MS.gene32135:intron |
| TGGTGGTGGGATTAGTGGTT+TGG | 0.352970 | 1.2:-56835360 | MS.gene32135:CDS |
| ATTGAAGTTGTTAAAAGAAC+TGG | 0.353382 | 1.2:-56828147 | MS.gene32135:CDS |
| TAATGCTGATGGTGTTGATT+TGG | 0.360937 | 1.2:-56835252 | MS.gene32135:CDS |
| TGAACTCTCAAAACACTCTT+GGG | 0.376065 | 1.2:+56829461 | None:intergenic |
| ACATACCTTCCAATAAAATT+GGG | 0.378336 | 1.2:+56829433 | None:intergenic |
| TATGGATCGCAATGAGTCTC+TGG | 0.380814 | 1.2:-56831830 | MS.gene32135:CDS |
| GTAGTTGGTGGTGGGATTAG+TGG | 0.389043 | 1.2:-56835365 | MS.gene32135:CDS |
| TCAAAGAATTCCATCATATT+GGG | 0.391112 | 1.2:+56832694 | None:intergenic |
| CTAGCAGATGCATACATTAA+TGG | 0.392160 | 1.2:-56829039 | MS.gene32135:CDS |
| TGTATGTCTTTGGTAATTGC+CGG | 0.395473 | 1.2:+56827842 | None:intergenic |
| TAAAGAACCAGTGGTAATAA+AGG | 0.395909 | 1.2:+56829792 | None:intergenic |
| ATGGAATTCTTTGAGAGTCT+TGG | 0.402654 | 1.2:-56832685 | MS.gene32135:CDS |
| GGTTATGGATTTCATGAAGA+TGG | 0.403889 | 1.2:-56830085 | MS.gene32135:CDS |
| TGGCATCCGCATCCAGACTA+TGG | 0.404974 | 1.2:-56827307 | MS.gene32135:intron |
| ACAAAGTTTGTGTCACATAC+TGG | 0.407521 | 1.2:-56830507 | MS.gene32135:CDS |
| AACCACATTGACTCCACCTT+TGG | 0.409238 | 1.2:+56835319 | None:intergenic |
| CTGAGTTCCTTTATTACCAC+TGG | 0.409745 | 1.2:-56829799 | MS.gene32135:CDS |
| AGTTCAAAGATGATGCTATA+AGG | 0.411304 | 1.2:-56832510 | MS.gene32135:intron |
| TACTCATCATAACGCTCATC+CGG | 0.413131 | 1.2:+56827410 | None:intergenic |
| GTGAACTCTCAAAACACTCT+TGG | 0.413336 | 1.2:+56829460 | None:intergenic |
| CAGAAAATACATTGCTTAAG+TGG | 0.413575 | 1.2:-56830327 | MS.gene32135:CDS |
| GCTCGAGAATAACCCAGATA+TGG | 0.416608 | 1.2:-56831848 | MS.gene32135:CDS |
| ATACTCTCACACAGGCTAGA+AGG | 0.417607 | 1.2:-56828667 | MS.gene32135:CDS |
| TTCCAAGCACTCCATGCTGC+TGG | 0.419561 | 1.2:+56830550 | None:intergenic |
| GATGGTGTTGATTTGGACCT+TGG | 0.425424 | 1.2:-56835245 | MS.gene32135:CDS |
| ACCCAGCAGCATGGAGTGCT+TGG | 0.427588 | 1.2:-56830552 | MS.gene32135:CDS |
| CAAAGGCCGTGGCTGCGAAT+GGG | 0.428208 | 1.2:-56832617 | MS.gene32135:CDS |
| TATTAGATTGTACCATAGTC+TGG | 0.429735 | 1.2:+56827295 | None:intergenic |
| GATATGAGAGTTGCAGTAGT+TGG | 0.429736 | 1.2:-56835380 | MS.gene32135:CDS |
| GGAACAATGTTTACCTTTGA+GGG | 0.431478 | 1.2:-56829503 | MS.gene32135:CDS |
| TCGCAATCACCACCTACTTC+AGG | 0.434220 | 1.2:-56831510 | MS.gene32135:intron |
| CCCAATAATCTCAAAGCATC+AGG | 0.435357 | 1.2:+56830752 | None:intergenic |
| ACGCACACTTGGGAATTATC+AGG | 0.436845 | 1.2:-56826874 | MS.gene32135:intron |
| CATGTGTCTTTAGGGGTTGG+TGG | 0.437757 | 1.2:-56828757 | MS.gene32135:intron |
| CAAAGACATACAAATATGAT+AGG | 0.440729 | 1.2:-56827831 | MS.gene32135:CDS |
| ACATTGCTTAAGTGGTCAAC+TGG | 0.455428 | 1.2:-56830319 | MS.gene32135:CDS |
| TCATTTGTTGATAAAGATGA+AGG | 0.459873 | 1.2:-56829009 | MS.gene32135:CDS |
| CGCAGCCACGGCCTTTGTCT+AGG | 0.462140 | 1.2:+56832623 | None:intergenic |
| AGGAACAATGTTTACCTTTG+AGG | 0.465754 | 1.2:-56829504 | MS.gene32135:CDS |
| GTATGAGAAAGAAGATTACT+TGG | 0.468571 | 1.2:-56835294 | MS.gene32135:CDS |
| ACAAAGGCCGTGGCTGCGAA+TGG | 0.469027 | 1.2:-56832618 | MS.gene32135:CDS |
| AAACCAGCCGTAAATAAAAT+CGG | 0.474194 | 1.2:+56828731 | None:intergenic |
| GTGTTTAGGGTTGGCCTGAA+GGG | 0.477380 | 1.2:+56829873 | None:intergenic |
| TGCTGCCCCATTCGCAGCCA+CGG | 0.479818 | 1.2:+56832611 | None:intergenic |
| GTCATGACACAGGCAGATTT+AGG | 0.481912 | 1.2:-56829063 | MS.gene32135:CDS |
| TGAGAGTCTTGGAGTGGAGA+TGG | 0.486645 | 1.2:-56832674 | MS.gene32135:CDS |
| GTACCTTCTTGGAAAGAACT+TGG | 0.490107 | 1.2:-56829847 | MS.gene32135:CDS |
| CTTGAGATTGGATGTGGATG+GGG | 0.492917 | 1.2:-56828180 | MS.gene32135:CDS |
| GCTGGCATGATTGCAGCTCA+TGG | 0.494331 | 1.2:-56829916 | MS.gene32135:CDS |
| TGGGGCAGCAGAAGTTTGTC+CGG | 0.495699 | 1.2:-56832598 | MS.gene32135:CDS |
| GAAATTCTTGAGATTGGATG+TGG | 0.499152 | 1.2:-56828186 | MS.gene32135:CDS |
| ATACTGGCTAAACATTCTTC+AGG | 0.502005 | 1.2:-56830491 | MS.gene32135:intron |
| CTGAATGCAGTAACGTTCCC+AGG | 0.504504 | 1.2:+56826746 | None:intergenic |
| TTGCAGAATATTGAAGAAGC+AGG | 0.504510 | 1.2:-56830388 | MS.gene32135:intron |
| TGTGTCGTTTACGGCAAAGA+TGG | 0.505224 | 1.2:-56830818 | MS.gene32135:CDS |
| GTAGAGCTAGACCATATTCA+AGG | 0.506705 | 1.2:-56830259 | MS.gene32135:CDS |
| GGATGAATTTAAATCTCTGT+TGG | 0.507932 | 1.2:+56828869 | None:intergenic |
| CTCCTCTGACAAAGTGATAC+CGG | 0.508711 | 1.2:+56828113 | None:intergenic |
| TCTTCATGGACCATGTTTCA+CGG | 0.510663 | 1.2:-56828694 | MS.gene32135:CDS |
| TCCAAGCACTCCATGCTGCT+GGG | 0.513463 | 1.2:+56830551 | None:intergenic |
| TGTGTTTAGGGTTGGCCTGA+AGG | 0.513499 | 1.2:+56829872 | None:intergenic |
| CCAACACAAAATTGAAAAGC+AGG | 0.514089 | 1.2:-56828848 | MS.gene32135:intron |
| CATTTCTAGACATTATGATC+TGG | 0.515475 | 1.2:-56828642 | MS.gene32135:intron |
| AGAGTTGCAGTAGTTGGTGG+TGG | 0.516334 | 1.2:-56835374 | MS.gene32135:CDS |
| GCTTTGTATGCGGCAACTGA+TGG | 0.517716 | 1.2:+56830286 | None:intergenic |
| GACCAAATAGAACCACAGAT+TGG | 0.519032 | 1.2:+56831587 | None:intergenic |
| AATTTCTTCTATGTGACTAC+CGG | 0.524362 | 1.2:-56827861 | MS.gene32135:CDS |
| TCTTGAGATTGGATGTGGAT+GGG | 0.525582 | 1.2:-56828181 | MS.gene32135:CDS |
| TCAGTGATCCATACAAAAGC+TGG | 0.525706 | 1.2:-56826727 | MS.gene32135:CDS |
| CTCACAGAATTATGTTAAGA+AGG | 0.526884 | 1.2:-56831351 | MS.gene32135:intron |
| AAAGGCCGTGGCTGCGAATG+GGG | 0.531237 | 1.2:-56832616 | MS.gene32135:CDS |
| CTTTGTATGCGGCAACTGAT+GGG | 0.531762 | 1.2:+56830287 | None:intergenic |
| GGTGACCTATCCCAATATGA+TGG | 0.534373 | 1.2:-56832704 | MS.gene32135:CDS |
| AAAGAAGAGCTTCAGAGTAA+TGG | 0.534950 | 1.2:-56831009 | MS.gene32135:CDS |
| GCTCCAAGTTCTTTCCAAGA+AGG | 0.535015 | 1.2:+56829844 | None:intergenic |
| AATATGATAGGATTATATCT+TGG | 0.535641 | 1.2:-56827819 | MS.gene32135:intron |
| TGTTTACCTTTGAGGGAACT+GGG | 0.536160 | 1.2:-56829496 | MS.gene32135:CDS |
| ATGAGCGTTATGATGAGTAT+AGG | 0.536472 | 1.2:-56827406 | MS.gene32135:CDS |
| ATGGATCGCAATGAGTCTCT+GGG | 0.539159 | 1.2:-56831829 | MS.gene32135:CDS |
| TGGGGCAATTCCTCAAGTCA+AGG | 0.540736 | 1.2:-56831810 | MS.gene32135:CDS |
| ACTATCAAACGTTAAGATTG+TGG | 0.544060 | 1.2:-56827099 | MS.gene32135:CDS |
| CTGAGTAACCCCTTGACTTG+AGG | 0.544473 | 1.2:+56831800 | None:intergenic |
| GAATTCCATCATATTGGGAT+AGG | 0.549525 | 1.2:+56832699 | None:intergenic |
| GGGGCAATTCCTCAAGTCAA+GGG | 0.550622 | 1.2:-56831809 | MS.gene32135:CDS |
| GAGGTGTTACAGCTTATTGG+AGG | 0.553124 | 1.2:-56829531 | MS.gene32135:intron |
| TATGCGGCAACTGATGGGAC+CGG | 0.554214 | 1.2:+56830292 | None:intergenic |
| AGTGAAATGATAGAAGCTGT+TGG | 0.554426 | 1.2:-56827709 | MS.gene32135:CDS |
| ACTCATTGCGATCCATATCT+GGG | 0.558605 | 1.2:+56831836 | None:intergenic |
| AGGTACCATGTGTTTAGGGT+TGG | 0.558886 | 1.2:+56829864 | None:intergenic |
| GTTGCCTACCCTCTCTAAGT+AGG | 0.559456 | 1.2:-56827343 | MS.gene32135:CDS |
| ATTTGGTCATGCTCTTCTGG+AGG | 0.561657 | 1.2:-56831572 | MS.gene32135:CDS |
| TTCTTGAGATTGGATGTGGA+TGG | 0.561971 | 1.2:-56828182 | MS.gene32135:CDS |
| CAGTGGTAATAAAGGAACTC+AGG | 0.570251 | 1.2:+56829800 | None:intergenic |
| CACAATGGCTAACTGTCAGA+TGG | 0.571687 | 1.2:-56831376 | MS.gene32135:CDS |
| CATCTGACAGTTAGCCATTG+TGG | 0.573207 | 1.2:+56831377 | None:intergenic |
| TCTATAGTTCATATCAATCC+CGG | 0.573341 | 1.2:-56827429 | MS.gene32135:intron |
| ATGCGGCAACTGATGGGACC+GGG | 0.576146 | 1.2:+56830293 | None:intergenic |
| TGTTACAGCTTATTGGAGGA+AGG | 0.576939 | 1.2:-56829527 | MS.gene32135:intron |
| ATTCTTTGAGAGTCTTGGAG+TGG | 0.577420 | 1.2:-56832680 | MS.gene32135:CDS |
| GAATCAGTAATGGCAAATGA+TGG | 0.578032 | 1.2:-56827652 | MS.gene32135:CDS |
| TAGTCTGGATGCGGATGCCA+TGG | 0.583295 | 1.2:+56827310 | None:intergenic |
| GGTTCTGAAGAAGTGTATGA+TGG | 0.583424 | 1.2:-56830797 | MS.gene32135:CDS |
| AAAACTTCCTGGAAAGGCAG+AGG | 0.583513 | 1.2:-56827072 | MS.gene32135:intron |
| ATGAGAGTTGCAGTAGTTGG+TGG | 0.585170 | 1.2:-56835377 | MS.gene32135:CDS |
| TGGTTGTTGTGAATCAGTAA+TGG | 0.588714 | 1.2:-56827662 | MS.gene32135:CDS |
| CATTAATGTATGCATCTGCT+AGG | 0.590392 | 1.2:+56829040 | None:intergenic |
| GTCAGCCTAGACAAAGGCCG+TGG | 0.590448 | 1.2:-56832628 | MS.gene32135:CDS |
| TGCCGCAAAACCCAGCAGCA+TGG | 0.590638 | 1.2:-56830561 | MS.gene32135:CDS |
| AGAGAGGGTAGGCAACCTCC+TGG | 0.591232 | 1.2:+56827350 | None:intergenic |
| AAGTAGGATCACATCATCCA+TGG | 0.591586 | 1.2:-56827327 | MS.gene32135:CDS |
| TGATGTGATCCTACTTAGAG+AGG | 0.597804 | 1.2:+56827334 | None:intergenic |
| AGCTGTTGGACATGAATACA+TGG | 0.598486 | 1.2:-56827695 | MS.gene32135:CDS |
| ATTGTACCATAGTCTGGATG+CGG | 0.599048 | 1.2:+56827301 | None:intergenic |
| ACTCATCATAACGCTCATCC+GGG | 0.599580 | 1.2:+56827411 | None:intergenic |
| AGTGTATGATGGATGCATAA+TGG | 0.602793 | 1.2:-56830786 | MS.gene32135:CDS |
| CAAAGCATCAGGTGCATGCA+CGG | 0.607487 | 1.2:+56830763 | None:intergenic |
| TAAGTGGTCAACTGGCCACC+CGG | 0.607543 | 1.2:-56830311 | MS.gene32135:CDS |
| CTCTACTGAAGCTTTGTATG+CGG | 0.610654 | 1.2:+56830276 | None:intergenic |
| TCTGTCCTAGAACCTGAAGT+AGG | 0.611202 | 1.2:+56831498 | None:intergenic |
| GAGTTGCAGTAGTTGGTGGT+GGG | 0.612691 | 1.2:-56835373 | MS.gene32135:CDS |
| TAGAGCTAGACCATATTCAA+GGG | 0.617186 | 1.2:-56830258 | MS.gene32135:CDS |
| CACCGGTATCACTTTGTCAG+AGG | 0.623821 | 1.2:-56828115 | MS.gene32135:CDS |
| AACTCTCAAAACACTCTTGG+GGG | 0.624346 | 1.2:+56829463 | None:intergenic |
| GTGGAGCACGTTGAAAACTT+CGG | 0.624785 | 1.2:-56827130 | MS.gene32135:CDS |
| TATGAGAAAGAAGATTACTT+GGG | 0.626650 | 1.2:-56835293 | MS.gene32135:CDS |
| GAGAAAGAAGATTACTTGGG+AGG | 0.629633 | 1.2:-56835290 | MS.gene32135:CDS |
| TGTATGTAGATTCCAATCTG+TGG | 0.631464 | 1.2:-56831599 | MS.gene32135:intron |
| GGCCAAAGGTGGAGTCAATG+TGG | 0.638271 | 1.2:-56835321 | MS.gene32135:CDS |
| GAACTCTCAAAACACTCTTG+GGG | 0.638316 | 1.2:+56829462 | None:intergenic |
| TGAATGCAGTAACGTTCCCA+GGG | 0.641508 | 1.2:+56826747 | None:intergenic |
| AACTCACGTTAAAGAACCAG+TGG | 0.644725 | 1.2:+56829783 | None:intergenic |
| CATACCTTCCAATAAAATTG+GGG | 0.646666 | 1.2:+56829434 | None:intergenic |
| GATGTGATCCTACTTAGAGA+GGG | 0.646927 | 1.2:+56827335 | None:intergenic |
| TCAGGAATCTAGTTACAAAG+AGG | 0.657976 | 1.2:+56829818 | None:intergenic |
| TACAGCTTATTGGAGGAAGG+AGG | 0.662186 | 1.2:-56829524 | MS.gene32135:intron |
| AGCTCTTTGGCAGACCACAA+TGG | 0.665504 | 1.2:-56831391 | MS.gene32135:CDS |
| GGGCAATTCCTCAAGTCAAG+GGG | 0.666111 | 1.2:-56831808 | MS.gene32135:CDS |
| GTCCTAGAACCTGAAGTAGG+TGG | 0.670779 | 1.2:+56831501 | None:intergenic |
| AGAACTGGTTGCAAATACAC+CGG | 0.676836 | 1.2:-56828132 | MS.gene32135:CDS |
| TCAGGCCAACCCTAAACACA+TGG | 0.680274 | 1.2:-56829869 | MS.gene32135:CDS |
| CGGCAACTGATGGGACCGGG+TGG | 0.683926 | 1.2:+56830296 | None:intergenic |
| TGATCCTACTTAGAGAGGGT+AGG | 0.687401 | 1.2:+56827339 | None:intergenic |
| TGTTTGTCAGGTCATGACAC+AGG | 0.688622 | 1.2:-56829073 | MS.gene32135:intron |
| TATTGAAGACCATGAAACCA+AGG | 0.698659 | 1.2:+56835228 | None:intergenic |
| TGGATCGCAATGAGTCTCTG+GGG | 0.724900 | 1.2:-56831828 | MS.gene32135:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 56826721 | 56835399 | 56826721 | ID=MS.gene32135 |
| chr1.2 | mRNA | 56826721 | 56835399 | 56826721 | ID=MS.gene32135.t1;Parent=MS.gene32135 |
| chr1.2 | exon | 56835226 | 56835399 | 56835226 | ID=MS.gene32135.t1.exon1;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56835226 | 56835399 | 56835226 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56832511 | 56832725 | 56832511 | ID=MS.gene32135.t1.exon2;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56832511 | 56832725 | 56832511 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56831777 | 56831882 | 56831777 | ID=MS.gene32135.t1.exon3;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56831777 | 56831882 | 56831777 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56831511 | 56831612 | 56831511 | ID=MS.gene32135.t1.exon4;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56831511 | 56831612 | 56831511 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56831352 | 56831411 | 56831352 | ID=MS.gene32135.t1.exon5;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56831352 | 56831411 | 56831352 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56830956 | 56831034 | 56830956 | ID=MS.gene32135.t1.exon6;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56830956 | 56831034 | 56830956 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56830695 | 56830842 | 56830695 | ID=MS.gene32135.t1.exon7;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56830695 | 56830842 | 56830695 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56830492 | 56830615 | 56830492 | ID=MS.gene32135.t1.exon8;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56830492 | 56830615 | 56830492 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56830224 | 56830404 | 56830224 | ID=MS.gene32135.t1.exon9;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56830224 | 56830404 | 56830224 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56830078 | 56830106 | 56830078 | ID=MS.gene32135.t1.exon10;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56830078 | 56830106 | 56830078 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56829790 | 56829938 | 56829790 | ID=MS.gene32135.t1.exon11;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56829790 | 56829938 | 56829790 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56829439 | 56829541 | 56829439 | ID=MS.gene32135.t1.exon12;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56829439 | 56829541 | 56829439 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56828990 | 56829085 | 56828990 | ID=MS.gene32135.t1.exon13;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56828990 | 56829085 | 56828990 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56828849 | 56828901 | 56828849 | ID=MS.gene32135.t1.exon14;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56828849 | 56828901 | 56828849 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56828643 | 56828766 | 56828643 | ID=MS.gene32135.t1.exon15;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56828643 | 56828766 | 56828643 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56828480 | 56828542 | 56828480 | ID=MS.gene32135.t1.exon16;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56828480 | 56828542 | 56828480 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56828311 | 56828370 | 56828311 | ID=MS.gene32135.t1.exon17;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56828311 | 56828370 | 56828311 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56828068 | 56828229 | 56828068 | ID=MS.gene32135.t1.exon18;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56828068 | 56828229 | 56828068 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56827820 | 56827893 | 56827820 | ID=MS.gene32135.t1.exon19;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56827820 | 56827893 | 56827820 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56827636 | 56827729 | 56827636 | ID=MS.gene32135.t1.exon20;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56827636 | 56827729 | 56827636 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56827308 | 56827444 | 56827308 | ID=MS.gene32135.t1.exon21;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56827308 | 56827444 | 56827308 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56827073 | 56827153 | 56827073 | ID=MS.gene32135.t1.exon22;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56827073 | 56827153 | 56827073 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56826875 | 56826980 | 56826875 | ID=MS.gene32135.t1.exon23;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56826875 | 56826980 | 56826875 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| chr1.2 | exon | 56826721 | 56826783 | 56826721 | ID=MS.gene32135.t1.exon24;Parent=MS.gene32135.t1 |
| chr1.2 | CDS | 56826721 | 56826783 | 56826721 | ID=cds.MS.gene32135.t1;Parent=MS.gene32135.t1 |
| Gene Sequence |
| Protein sequence |
