Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32515.t1 | XP_003616475.1 | 100 | 361 | 0 | 0 | 1 | 361 | 1 | 361 | 3.20E-194 | 687.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32515.t1 | O22287 | 91.1 | 361 | 32 | 0 | 1 | 361 | 1 | 361 | 1.4e-179 | 630.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32515.t1 | G7KGV6 | 100.0 | 361 | 0 | 0 | 1 | 361 | 1 | 361 | 2.3e-194 | 687.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051433 | MS.gene32515 | 0.824274 | 8.82E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene32515 | MS.gene07262 | PPI |
| MS.gene32515 | MS.gene20834 | PPI |
| MS.gene20783 | MS.gene32515 | PPI |
| MS.gene70588 | MS.gene32515 | PPI |
| MS.gene022258 | MS.gene32515 | PPI |
| MS.gene25915 | MS.gene32515 | PPI |
| MS.gene074391 | MS.gene32515 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32515.t1 | MTR_5g080770 | 100.000 | 361 | 0 | 0 | 1 | 361 | 1 | 361 | 0.0 | 734 |
| MS.gene32515.t1 | MTR_3g069070 | 93.075 | 361 | 25 | 0 | 1 | 361 | 1 | 361 | 0.0 | 684 |
| MS.gene32515.t1 | MTR_3g069070 | 92.384 | 302 | 23 | 0 | 60 | 361 | 1 | 302 | 0.0 | 572 |
| MS.gene32515.t1 | MTR_4g133690 | 77.562 | 361 | 24 | 3 | 1 | 361 | 1 | 304 | 0.0 | 537 |
| MS.gene32515.t1 | MTR_3g078570 | 32.000 | 400 | 224 | 7 | 3 | 354 | 10 | 409 | 6.02e-63 | 206 |
| MS.gene32515.t1 | MTR_6g008840 | 32.432 | 407 | 226 | 8 | 3 | 361 | 9 | 414 | 4.62e-61 | 202 |
| MS.gene32515.t1 | MTR_3g078570 | 31.755 | 359 | 206 | 6 | 3 | 322 | 10 | 368 | 8.87e-57 | 189 |
| MS.gene32515.t1 | MTR_4g071670 | 31.034 | 232 | 108 | 6 | 168 | 361 | 3 | 220 | 6.65e-23 | 95.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32515.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene32515.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene32515.t1 | AT2G39770 | 91.690 | 361 | 30 | 0 | 1 | 361 | 1 | 361 | 0.0 | 679 |
| MS.gene32515.t1 | AT3G55590 | 85.165 | 364 | 51 | 1 | 1 | 361 | 1 | 364 | 0.0 | 636 |
| MS.gene32515.t1 | AT4G30570 | 76.292 | 329 | 77 | 1 | 21 | 348 | 1 | 329 | 0.0 | 515 |
| MS.gene32515.t1 | AT1G74910 | 30.788 | 406 | 233 | 8 | 3 | 361 | 11 | 415 | 2.10e-62 | 205 |
| MS.gene32515.t1 | AT1G74910 | 30.788 | 406 | 233 | 8 | 3 | 361 | 11 | 415 | 2.10e-62 | 205 |
| MS.gene32515.t1 | AT2G04650 | 31.552 | 393 | 228 | 7 | 3 | 354 | 8 | 400 | 1.78e-61 | 202 |
| MS.gene32515.t1 | AT2G04650 | 31.169 | 385 | 226 | 6 | 9 | 354 | 4 | 388 | 4.88e-61 | 201 |
| MS.gene32515.t1 | AT1G74910 | 30.685 | 365 | 215 | 6 | 3 | 329 | 11 | 375 | 6.87e-57 | 190 |
Find 111 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATGGTCCTTCCTGGTTTC+TGG | 0.049637 | 5.2:+68631481 | MS.gene32515:CDS |
| GAGACATCCCTCGCCAATTT+TGG | 0.195747 | 5.2:-68631634 | None:intergenic |
| CCTATTGAATCCCTCTGTTT+TGG | 0.205302 | 5.2:+68631383 | MS.gene32515:CDS |
| TACCTCTGGTTGGTAATTAA+TGG | 0.211786 | 5.2:-68630791 | None:intergenic |
| CACAATGAAGGCATTGATTC+TGG | 0.231325 | 5.2:+68630357 | None:intergenic |
| GCTTACCTTTGTTACCATTA+TGG | 0.253775 | 5.2:-68631154 | None:intergenic |
| TGCATTTCCAGTAGTATTAT+TGG | 0.270402 | 5.2:+68631759 | MS.gene32515:CDS |
| GTTGATGAGCCATCAAAATA+TGG | 0.294988 | 5.2:+68631267 | MS.gene32515:CDS |
| GCATTTCCAGTAGTATTATT+GGG | 0.340951 | 5.2:+68631760 | MS.gene32515:CDS |
| GTGGACGAAACAGCCAAAAT+TGG | 0.347283 | 5.2:+68631621 | MS.gene32515:CDS |
| GCATTGTTGAGTCTGGTGTT+AGG | 0.363709 | 5.2:+68631688 | MS.gene32515:CDS |
| CACTGGCTTGAGGCTTTACC+TGG | 0.369547 | 5.2:+68631533 | MS.gene32515:CDS |
| AAAATATGGGGTGGTTGTTA+TGG | 0.370396 | 5.2:+68631281 | MS.gene32515:CDS |
| GCAAAATCAACAAGAGGCTT+AGG | 0.374674 | 5.2:-68630424 | None:intergenic |
| CTATATGCAATGGTCCTTCC+TGG | 0.379450 | 5.2:+68631474 | MS.gene32515:CDS |
| GGCATTCCACTGTCGGGCAA+TGG | 0.380847 | 5.2:+68631784 | MS.gene32515:CDS |
| CTTCCCCTCCATGGGATTTG+TGG | 0.384607 | 5.2:-68631128 | None:intergenic |
| TGCAAGCATGTTTCTTGATC+CGG | 0.388859 | 5.2:-68631740 | None:intergenic |
| TGAAGGCATTGATTCTGGTT+GGG | 0.402317 | 5.2:+68630362 | MS.gene32515:CDS |
| AATTCAATCATTTCTTTAAG+TGG | 0.409592 | 5.2:-68631105 | None:intergenic |
| ATTTCAGATAGAGGCTCTTA+AGG | 0.411528 | 5.2:+68630741 | MS.gene32515:intron |
| GCATTCCACTGTCGGGCAAT+GGG | 0.416812 | 5.2:+68631785 | MS.gene32515:CDS |
| ATTTGTCTTAATCTCCTTGT+GGG | 0.419610 | 5.2:-68631889 | None:intergenic |
| TCGCAAGAAACTGAACCATT+AGG | 0.421123 | 5.2:+68630988 | MS.gene32515:CDS |
| GCCGGTGGCTCTAACATTGT+GGG | 0.431030 | 5.2:+68631588 | MS.gene32515:CDS |
| CCTGATGTCGCTATCGGTCC+TGG | 0.434526 | 5.2:+68631663 | MS.gene32515:CDS |
| CCTGGCTGCATTGTTGAGTC+TGG | 0.437150 | 5.2:+68631681 | MS.gene32515:CDS |
| CTTTACCTGATGCAGAATCA+TGG | 0.441184 | 5.2:-68630455 | None:intergenic |
| CAAACCCATGATTCTGCATC+AGG | 0.445402 | 5.2:+68630450 | MS.gene32515:CDS |
| ATGCCACCCAATAATACTAC+TGG | 0.456491 | 5.2:-68631766 | None:intergenic |
| GAAGGCATTGATTCTGGTTG+GGG | 0.475018 | 5.2:+68630363 | MS.gene32515:CDS |
| ATTGGCGAGGGATGTCTCAT+TGG | 0.477910 | 5.2:+68631639 | MS.gene32515:CDS |
| GTTGTTATGGAGGAGACAAC+AGG | 0.478358 | 5.2:+68631294 | MS.gene32515:CDS |
| GTTGGTAACAAAATCAATGC+TGG | 0.478891 | 5.2:+68631354 | MS.gene32515:CDS |
| CCAAAACAGAGGGATTCAAT+AGG | 0.480924 | 5.2:-68631383 | None:intergenic |
| GAAGAAGTCTTCTTCGAAGT+TGG | 0.483283 | 5.2:+68631566 | MS.gene32515:CDS |
| GGTTATGTTGAATTTCTTGA+AGG | 0.483467 | 5.2:+68630930 | MS.gene32515:intron |
| ATATGGGGTGGTTGTTATGG+AGG | 0.483471 | 5.2:+68631284 | MS.gene32515:CDS |
| GCACAGTAATGCGAGGAGTC+CGG | 0.487294 | 5.2:+68631721 | MS.gene32515:CDS |
| TTGATGAGCCATCAAAATAT+GGG | 0.488066 | 5.2:+68631268 | MS.gene32515:CDS |
| TTGTTACCAACAAACAACTT+TGG | 0.493157 | 5.2:-68631342 | None:intergenic |
| ATTGGGTGGCATTCCACTGT+CGG | 0.494027 | 5.2:+68631777 | MS.gene32515:CDS |
| ATGAAGGCATTGATTCTGGT+TGG | 0.494195 | 5.2:+68630361 | MS.gene32515:CDS |
| TTATGGAAGCTTCCCCTCCA+TGG | 0.496188 | 5.2:-68631137 | None:intergenic |
| TGGAGGGGAAGCTTCCATAA+TGG | 0.497290 | 5.2:+68631140 | MS.gene32515:CDS |
| TTGGGTGGCATTCCACTGTC+GGG | 0.498250 | 5.2:+68631778 | MS.gene32515:CDS |
| GTGGAGAATATGACTATCCT+TGG | 0.500881 | 5.2:+68631813 | MS.gene32515:CDS |
| TGGAGTCACTGAAGTGGTAC+TGG | 0.502053 | 5.2:+68630768 | MS.gene32515:CDS |
| GGTCCTTCCTGGTTTCTGGA+TGG | 0.503601 | 5.2:+68631485 | MS.gene32515:CDS |
| TTAGGGACACTGAGTGTCAA+TGG | 0.504104 | 5.2:-68630406 | None:intergenic |
| AGACCTCACATGACAATCTC+TGG | 0.504323 | 5.2:-68631921 | None:intergenic |
| TTTACCTGATGCAGAATCAT+GGG | 0.506591 | 5.2:-68630454 | None:intergenic |
| GGCCGGTGGCTCTAACATTG+TGG | 0.507298 | 5.2:+68631587 | MS.gene32515:CDS |
| TATGGAAGCTTCCCCTCCAT+GGG | 0.509917 | 5.2:-68631136 | None:intergenic |
| CAAAATCAACAAGAGGCTTA+GGG | 0.510775 | 5.2:-68630423 | None:intergenic |
| CCAGGACCGATAGCGACATC+AGG | 0.513487 | 5.2:-68631663 | None:intergenic |
| ATAGAGGCTCTTAAGGCGAC+TGG | 0.515685 | 5.2:+68630748 | MS.gene32515:CDS |
| TGTCGGGCAATGGGCTCGAG+TGG | 0.517470 | 5.2:+68631794 | MS.gene32515:CDS |
| CCCCACAATGTTAGAGCCAC+CGG | 0.519548 | 5.2:-68631589 | None:intergenic |
| ATTCAATCATTTCTTTAAGT+GGG | 0.523853 | 5.2:-68631104 | None:intergenic |
| ATTGGACCTGATGTCGCTAT+CGG | 0.527457 | 5.2:+68631657 | MS.gene32515:CDS |
| CAACCGAGGGACTATATCAC+TGG | 0.534394 | 5.2:+68631516 | MS.gene32515:CDS |
| TATTTGTCTTAATCTCCTTG+TGG | 0.538459 | 5.2:-68631890 | None:intergenic |
| AAGTCTTCTTCGAAGTTGGC+CGG | 0.541250 | 5.2:+68631570 | MS.gene32515:CDS |
| TGATCCTCCTTACCTCTGGT+TGG | 0.553108 | 5.2:-68630801 | None:intergenic |
| CCTGGTTTCTGGATGGACAT+CGG | 0.557795 | 5.2:+68631492 | MS.gene32515:CDS |
| ACTGAACCATTAGGAACTGC+AGG | 0.559054 | 5.2:+68630997 | MS.gene32515:CDS |
| TCGAGCCCATTGCCCGACAG+TGG | 0.567442 | 5.2:-68631790 | None:intergenic |
| ACTTCTTCCTCAGTGAGTCC+AGG | 0.572292 | 5.2:-68631551 | None:intergenic |
| GACAAGCTGATAGATGACTC+TGG | 0.573827 | 5.2:+68631039 | MS.gene32515:CDS |
| TTCAATTCGATCCAAAACAG+AGG | 0.573855 | 5.2:-68631394 | None:intergenic |
| CCGATGTCCATCCAGAAACC+AGG | 0.575033 | 5.2:-68631492 | None:intergenic |
| AGGCATTGATTCTGGTTGGG+GGG | 0.577286 | 5.2:+68630365 | MS.gene32515:CDS |
| TCAATTCGATCCAAAACAGA+GGG | 0.579956 | 5.2:-68631393 | None:intergenic |
| CATTGTGGGGAATGTTATTG+TGG | 0.580703 | 5.2:+68631602 | MS.gene32515:CDS |
| ATTGAATTCCACAAATCCCA+TGG | 0.584474 | 5.2:+68631120 | MS.gene32515:CDS |
| AATTCCACAAATCCCATGGA+GGG | 0.587789 | 5.2:+68631124 | MS.gene32515:CDS |
| TATGGAGGAGACAACAGGGC+AGG | 0.589773 | 5.2:+68631299 | MS.gene32515:CDS |
| GCTTGTCCCTAGCAAGAGCA+AGG | 0.593241 | 5.2:-68631023 | None:intergenic |
| AGCTTCCATAATGGTAACAA+AGG | 0.594491 | 5.2:+68631149 | MS.gene32515:CDS |
| TTGTCCCTAGCAAGAGCAAG+GGG | 0.600214 | 5.2:-68631021 | None:intergenic |
| AAGGCATTGATTCTGGTTGG+GGG | 0.602293 | 5.2:+68630364 | MS.gene32515:CDS |
| TTGTTAGCAAAATCAACAAG+AGG | 0.603818 | 5.2:-68630430 | None:intergenic |
| CGAAACAGCCAAAATTGGCG+AGG | 0.610805 | 5.2:+68631626 | MS.gene32515:CDS |
| CCAGACTCAACAATGCAGCC+AGG | 0.618646 | 5.2:-68631681 | None:intergenic |
| TTTGTCTTAATCTCCTTGTG+GGG | 0.619933 | 5.2:-68631888 | None:intergenic |
| CTTGTCCCTAGCAAGAGCAA+GGG | 0.621120 | 5.2:-68631022 | None:intergenic |
| TGTGATGAGATTTACAGCAA+TGG | 0.623004 | 5.2:+68631852 | MS.gene32515:CDS |
| TTTCCAGTAGTATTATTGGG+TGG | 0.628400 | 5.2:+68631763 | MS.gene32515:CDS |
| AAACATGAACATCTTCTCCA+AGG | 0.629278 | 5.2:-68631830 | None:intergenic |
| CCGGTGGCTCTAACATTGTG+GGG | 0.634245 | 5.2:+68631589 | MS.gene32515:CDS |
| TCTTCTTCGAAGTTGGCCGG+TGG | 0.634593 | 5.2:+68631573 | MS.gene32515:CDS |
| AAGCCAGTGATATAGTCCCT+CGG | 0.642817 | 5.2:-68631519 | None:intergenic |
| GGCGACTGGAGTCACTGAAG+TGG | 0.645491 | 5.2:+68630762 | MS.gene32515:CDS |
| GATGGACATCGGACAACCGA+GGG | 0.646783 | 5.2:+68631503 | MS.gene32515:CDS |
| GGGACTATATCACTGGCTTG+AGG | 0.648940 | 5.2:+68631523 | MS.gene32515:CDS |
| ATTCCACAAATCCCATGGAG+GGG | 0.651317 | 5.2:+68631125 | MS.gene32515:CDS |
| TCGCGCTGCACAGTAATGCG+AGG | 0.663076 | 5.2:+68631714 | MS.gene32515:CDS |
| GATTTACAGCAATGGTGGTG+TGG | 0.663263 | 5.2:+68631860 | MS.gene32515:CDS |
| TGATGAGCCATCAAAATATG+GGG | 0.663348 | 5.2:+68631269 | MS.gene32515:CDS |
| GGCCATTAATTACCAACCAG+AGG | 0.667310 | 5.2:+68630789 | MS.gene32515:CDS |
| GGATGGACATCGGACAACCG+AGG | 0.667624 | 5.2:+68631502 | MS.gene32515:CDS |
| TTGTTATGGAGGAGACAACA+GGG | 0.671972 | 5.2:+68631295 | MS.gene32515:CDS |
| GAAACAGCCAAAATTGGCGA+GGG | 0.673370 | 5.2:+68631627 | MS.gene32515:CDS |
| AAGCCAGAGATTGTCATGTG+AGG | 0.678411 | 5.2:+68631918 | MS.gene32515:CDS |
| GGCTTTACCTGGACTCACTG+AGG | 0.679034 | 5.2:+68631544 | MS.gene32515:CDS |
| GAATTCCACAAATCCCATGG+AGG | 0.679237 | 5.2:+68631123 | MS.gene32515:CDS |
| GATGAGATTTACAGCAATGG+TGG | 0.690673 | 5.2:+68631855 | MS.gene32515:CDS |
| TGTCCATCCAGAAACCAGGA+AGG | 0.712182 | 5.2:-68631488 | None:intergenic |
| TGTCCCTAGCAAGAGCAAGG+GGG | 0.727307 | 5.2:-68631020 | None:intergenic |
| TGAGCCATCAAAATATGGGG+TGG | 0.761819 | 5.2:+68631272 | MS.gene32515:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACAGATATAAAACTTAT+AGG | - | chr5.2:68630499-68630518 | None:intergenic | 15.0% |
| !! | TAACAGATATAAAACTTATA+GGG | - | chr5.2:68630498-68630517 | None:intergenic | 15.0% |
| !!! | AAATTTCTTTATTTTGACTT+TGG | + | chr5.2:68630890-68630909 | MS.gene32515:intron | 15.0% |
| !!! | ATTTAATTTTGCCATATTAA+GGG | - | chr5.2:68630720-68630739 | None:intergenic | 15.0% |
| !!! | GAAGTCATTTAATTTTAAAA+AGG | - | chr5.2:68630623-68630642 | None:intergenic | 15.0% |
| !!! | TGTTTGCATTATTATTTTAT+TGG | - | chr5.2:68631179-68631198 | None:intergenic | 15.0% |
| !! | AATTAAATGATTTCAGATAG+AGG | + | chr5.2:68630732-68630751 | MS.gene32515:intron | 20.0% |
| !! | AATTCAATCATTTCTTTAAG+TGG | - | chr5.2:68631108-68631127 | None:intergenic | 20.0% |
| !! | ATTCAATCATTTCTTTAAGT+GGG | - | chr5.2:68631107-68631126 | None:intergenic | 20.0% |
| !!! | AATTTCTTTTTCAATAGAAG+TGG | - | chr5.2:68631427-68631446 | None:intergenic | 20.0% |
| !!! | ATTTCTTTTTCAATAGAAGT+GGG | - | chr5.2:68631426-68631445 | None:intergenic | 20.0% |
| !!! | CATTTAATTTTGCCATATTA+AGG | - | chr5.2:68630721-68630740 | None:intergenic | 20.0% |
| !!! | TATTTCTATTTCCCTTAATA+TGG | + | chr5.2:68630706-68630725 | MS.gene32515:intron | 20.0% |
| !!! | TTATGTTCTAGAATATGTTT+GGG | + | chr5.2:68630515-68630534 | MS.gene32515:intron | 20.0% |
| ! | ATCCTTCAAAAACAAAATTG+TGG | + | chr5.2:68630864-68630883 | MS.gene32515:intron | 25.0% |
| ! | GTTCTACACAAATAAAAAAG+TGG | - | chr5.2:68630661-68630680 | None:intergenic | 25.0% |
| ! | TCACTGTTAAGAACAAAAAA+TGG | - | chr5.2:68631069-68631088 | None:intergenic | 25.0% |
| !!! | GTTATGTTCTAGAATATGTT+TGG | + | chr5.2:68630514-68630533 | MS.gene32515:intron | 25.0% |
| !!! | TAAAACAGTGTTTTAAGAAG+AGG | - | chr5.2:68630840-68630859 | None:intergenic | 25.0% |
| AATCGAAAATCTGTGTTATG+TGG | - | chr5.2:68630599-68630618 | None:intergenic | 30.0% | |
| AATTCAACATAACCTGAAGT+AGG | - | chr5.2:68630924-68630943 | None:intergenic | 30.0% | |
| AGAGAAAAAGCTATATGCAA+TGG | + | chr5.2:68631464-68631483 | MS.gene32515:CDS | 30.0% | |
| ATTTGTCTTAATCTCCTTGT+GGG | - | chr5.2:68631892-68631911 | None:intergenic | 30.0% | |
| GAAAAACCAAAGTTGTTTGT+TGG | + | chr5.2:68631336-68631355 | MS.gene32515:CDS | 30.0% | |
| GCATTTCCAGTAGTATTATT+GGG | + | chr5.2:68631760-68631779 | MS.gene32515:CDS | 30.0% | |
| GGTTATGTTGAATTTCTTGA+AGG | + | chr5.2:68630930-68630949 | MS.gene32515:intron | 30.0% | |
| TATGCACATAAATACATGAC+AGG | - | chr5.2:68630683-68630702 | None:intergenic | 30.0% | |
| TATTTGTCTTAATCTCCTTG+TGG | - | chr5.2:68631893-68631912 | None:intergenic | 30.0% | |
| TGCATTTCCAGTAGTATTAT+TGG | + | chr5.2:68631759-68631778 | MS.gene32515:CDS | 30.0% | |
| TTGATGAGCCATCAAAATAT+GGG | + | chr5.2:68631268-68631287 | MS.gene32515:CDS | 30.0% | |
| TTGTTACCAACAAACAACTT+TGG | - | chr5.2:68631345-68631364 | None:intergenic | 30.0% | |
| TTGTTAGCAAAATCAACAAG+AGG | - | chr5.2:68630433-68630452 | None:intergenic | 30.0% | |
| !!! | AGCCACAATTTTGTTTTTGA+AGG | - | chr5.2:68630869-68630888 | None:intergenic | 30.0% |
| !!! | ATTTTTTCGTCTACTTGTGT+AGG | + | chr5.2:68631245-68631264 | MS.gene32515:intron | 30.0% |
| AAAATATGGGGTGGTTGTTA+TGG | + | chr5.2:68631281-68631300 | MS.gene32515:CDS | 35.0% | |
| AAACATGAACATCTTCTCCA+AGG | - | chr5.2:68631833-68631852 | None:intergenic | 35.0% | |
| AGCTTCCATAATGGTAACAA+AGG | + | chr5.2:68631149-68631168 | MS.gene32515:CDS | 35.0% | |
| ATTGAATTCCACAAATCCCA+TGG | + | chr5.2:68631120-68631139 | MS.gene32515:CDS | 35.0% | |
| ATTTCAGATAGAGGCTCTTA+AGG | + | chr5.2:68630741-68630760 | MS.gene32515:intron | 35.0% | |
| CAAAATCAACAAGAGGCTTA+GGG | - | chr5.2:68630426-68630445 | None:intergenic | 35.0% | |
| GCTTACCTTTGTTACCATTA+TGG | - | chr5.2:68631157-68631176 | None:intergenic | 35.0% | |
| TCAATTCGATCCAAAACAGA+GGG | - | chr5.2:68631396-68631415 | None:intergenic | 35.0% | |
| TGATGAGCCATCAAAATATG+GGG | + | chr5.2:68631269-68631288 | MS.gene32515:CDS | 35.0% | |
| TGTGATGAGATTTACAGCAA+TGG | + | chr5.2:68631852-68631871 | MS.gene32515:CDS | 35.0% | |
| TGTTGAATGCTTTCTAAACC+CGG | + | chr5.2:68630549-68630568 | MS.gene32515:intron | 35.0% | |
| TTAATTACCAACCAGAGGTA+AGG | + | chr5.2:68630794-68630813 | MS.gene32515:intron | 35.0% | |
| TTCAATTCGATCCAAAACAG+AGG | - | chr5.2:68631397-68631416 | None:intergenic | 35.0% | |
| TTTACCTGATGCAGAATCAT+GGG | - | chr5.2:68630457-68630476 | None:intergenic | 35.0% | |
| TTTCCAGTAGTATTATTGGG+TGG | + | chr5.2:68631763-68631782 | MS.gene32515:CDS | 35.0% | |
| TTTGTCTTAATCTCCTTGTG+GGG | - | chr5.2:68631891-68631910 | None:intergenic | 35.0% | |
| ! | GTTGATGAGCCATCAAAATA+TGG | + | chr5.2:68631267-68631286 | MS.gene32515:CDS | 35.0% |
| ! | TTTTGGATCGAATTGAACTG+AGG | + | chr5.2:68631400-68631419 | MS.gene32515:CDS | 35.0% |
| ! | TTTTTCTCTGCAGCAATCTT+TGG | - | chr5.2:68631453-68631472 | None:intergenic | 35.0% |
| !! | GTTGGTAACAAAATCAATGC+TGG | + | chr5.2:68631354-68631373 | MS.gene32515:CDS | 35.0% |
| !! | TACCTCTGGTTGGTAATTAA+TGG | - | chr5.2:68630794-68630813 | None:intergenic | 35.0% |
| !!! | AAGGATTTTGAAGCAAAGCT+TGG | + | chr5.2:68630949-68630968 | MS.gene32515:CDS | 35.0% |
| AATTCCACAAATCCCATGGA+GGG | + | chr5.2:68631124-68631143 | MS.gene32515:CDS | 40.0% | |
| ATGCCACCCAATAATACTAC+TGG | - | chr5.2:68631769-68631788 | None:intergenic | 40.0% | |
| CATTGTGGGGAATGTTATTG+TGG | + | chr5.2:68631602-68631621 | MS.gene32515:CDS | 40.0% | |
| CCAAAACAGAGGGATTCAAT+AGG | - | chr5.2:68631386-68631405 | None:intergenic | 40.0% | |
| CTTTACCTGATGCAGAATCA+TGG | - | chr5.2:68630458-68630477 | None:intergenic | 40.0% | |
| GAAGAAGTCTTCTTCGAAGT+TGG | + | chr5.2:68631566-68631585 | MS.gene32515:CDS | 40.0% | |
| GATGAGATTTACAGCAATGG+TGG | + | chr5.2:68631855-68631874 | MS.gene32515:CDS | 40.0% | |
| GCAAAATCAACAAGAGGCTT+AGG | - | chr5.2:68630427-68630446 | None:intergenic | 40.0% | |
| GTGGAGAATATGACTATCCT+TGG | + | chr5.2:68631813-68631832 | MS.gene32515:CDS | 40.0% | |
| TCGCAAGAAACTGAACCATT+AGG | + | chr5.2:68630988-68631007 | MS.gene32515:CDS | 40.0% | |
| TGCAAGCATGTTTCTTGATC+CGG | - | chr5.2:68631743-68631762 | None:intergenic | 40.0% | |
| TTGGCAATACTTCCTACTTC+AGG | + | chr5.2:68630909-68630928 | MS.gene32515:intron | 40.0% | |
| TTGTTATGGAGGAGACAACA+GGG | + | chr5.2:68631295-68631314 | MS.gene32515:CDS | 40.0% | |
| ! | AAAGCATCAGAATCAGATGC+CGG | - | chr5.2:68630571-68630590 | None:intergenic | 40.0% |
| ! | CCTATTGAATCCCTCTGTTT+TGG | + | chr5.2:68631383-68631402 | MS.gene32515:CDS | 40.0% |
| !! | ACAACCACCCCATATTTTGA+TGG | - | chr5.2:68631279-68631298 | None:intergenic | 40.0% |
| !! | ATGAAGGCATTGATTCTGGT+TGG | + | chr5.2:68630361-68630380 | MS.gene32515:CDS | 40.0% |
| !! | TGAAGGCATTGATTCTGGTT+GGG | + | chr5.2:68630362-68630381 | MS.gene32515:CDS | 40.0% |
| AAGCATCAGAATCAGATGCC+GGG | - | chr5.2:68630570-68630589 | None:intergenic | 45.0% | |
| AAGCCAGTGATATAGTCCCT+CGG | - | chr5.2:68631522-68631541 | None:intergenic | 45.0% | |
| AAGTCTTCTTCGAAGTTGGC+CGG | + | chr5.2:68631570-68631589 | MS.gene32515:CDS | 45.0% | |
| ACTGAACCATTAGGAACTGC+AGG | + | chr5.2:68630997-68631016 | MS.gene32515:CDS | 45.0% | |
| ATATGGGGTGGTTGTTATGG+AGG | + | chr5.2:68631284-68631303 | MS.gene32515:CDS | 45.0% | |
| ATTACCAACCAGAGGTAAGG+AGG | + | chr5.2:68630797-68630816 | MS.gene32515:intron | 45.0% | |
| ATTCCACAAATCCCATGGAG+GGG | + | chr5.2:68631125-68631144 | MS.gene32515:CDS | 45.0% | |
| ATTGGACCTGATGTCGCTAT+CGG | + | chr5.2:68631657-68631676 | MS.gene32515:CDS | 45.0% | |
| CAAACCCATGATTCTGCATC+AGG | + | chr5.2:68630450-68630469 | MS.gene32515:CDS | 45.0% | |
| CTATATGCAATGGTCCTTCC+TGG | + | chr5.2:68631474-68631493 | MS.gene32515:CDS | 45.0% | |
| GAAACAGCCAAAATTGGCGA+GGG | + | chr5.2:68631627-68631646 | MS.gene32515:CDS | 45.0% | |
| GAATTCCACAAATCCCATGG+AGG | + | chr5.2:68631123-68631142 | MS.gene32515:CDS | 45.0% | |
| GACAAGCTGATAGATGACTC+TGG | + | chr5.2:68631039-68631058 | MS.gene32515:CDS | 45.0% | |
| GCATTGTTGAGTCTGGTGTT+AGG | + | chr5.2:68631688-68631707 | MS.gene32515:CDS | 45.0% | |
| GGCCATTAATTACCAACCAG+AGG | + | chr5.2:68630789-68630808 | MS.gene32515:CDS | 45.0% | |
| GTGGACGAAACAGCCAAAAT+TGG | + | chr5.2:68631621-68631640 | MS.gene32515:CDS | 45.0% | |
| GTTGTTATGGAGGAGACAAC+AGG | + | chr5.2:68631294-68631313 | MS.gene32515:CDS | 45.0% | |
| TGAGCCATCAAAATATGGGG+TGG | + | chr5.2:68631272-68631291 | MS.gene32515:CDS | 45.0% | |
| TTAGGGACACTGAGTGTCAA+TGG | - | chr5.2:68630409-68630428 | None:intergenic | 45.0% | |
| ! | GATTTACAGCAATGGTGGTG+TGG | + | chr5.2:68631860-68631879 | MS.gene32515:CDS | 45.0% |
| !! | AAGGCATTGATTCTGGTTGG+GGG | + | chr5.2:68630364-68630383 | MS.gene32515:CDS | 45.0% |
| !! | GAAGGCATTGATTCTGGTTG+GGG | + | chr5.2:68630363-68630382 | MS.gene32515:CDS | 45.0% |
| ACTTCTTCCTCAGTGAGTCC+AGG | - | chr5.2:68631554-68631573 | None:intergenic | 50.0% | |
| AGTGTGATCCTCCTTACCTC+TGG | - | chr5.2:68630808-68630827 | None:intergenic | 50.0% | |
| ATAGAGGCTCTTAAGGCGAC+TGG | + | chr5.2:68630748-68630767 | MS.gene32515:CDS | 50.0% | |
| ATTGGCGAGGGATGTCTCAT+TGG | + | chr5.2:68631639-68631658 | MS.gene32515:CDS | 50.0% | |
| ATTGGGTGGCATTCCACTGT+CGG | + | chr5.2:68631777-68631796 | MS.gene32515:CDS | 50.0% | |
| CAACCGAGGGACTATATCAC+TGG | + | chr5.2:68631516-68631535 | MS.gene32515:CDS | 50.0% | |
| CAATGGTCCTTCCTGGTTTC+TGG | + | chr5.2:68631481-68631500 | MS.gene32515:CDS | 50.0% | |
| CGAAACAGCCAAAATTGGCG+AGG | + | chr5.2:68631626-68631645 | MS.gene32515:CDS | 50.0% | |
| CTTGTCCCTAGCAAGAGCAA+GGG | - | chr5.2:68631025-68631044 | None:intergenic | 50.0% | |
| TATGGAAGCTTCCCCTCCAT+GGG | - | chr5.2:68631139-68631158 | None:intergenic | 50.0% | |
| TGATCCTCCTTACCTCTGGT+TGG | - | chr5.2:68630804-68630823 | None:intergenic | 50.0% | |
| TGGAGGGGAAGCTTCCATAA+TGG | + | chr5.2:68631140-68631159 | MS.gene32515:CDS | 50.0% | |
| TGGAGTCACTGAAGTGGTAC+TGG | + | chr5.2:68630768-68630787 | MS.gene32515:CDS | 50.0% | |
| TGTCCATCCAGAAACCAGGA+AGG | - | chr5.2:68631491-68631510 | None:intergenic | 50.0% | |
| TTATGGAAGCTTCCCCTCCA+TGG | - | chr5.2:68631140-68631159 | None:intergenic | 50.0% | |
| TTGTCCCTAGCAAGAGCAAG+GGG | - | chr5.2:68631024-68631043 | None:intergenic | 50.0% | |
| ! | CCTGGTTTCTGGATGGACAT+CGG | + | chr5.2:68631492-68631511 | MS.gene32515:CDS | 50.0% |
| ! | GAGACATCCCTCGCCAATTT+TGG | - | chr5.2:68631637-68631656 | None:intergenic | 50.0% |
| ! | TTGATTCTGGTTGGGGGGTT+TGG | + | chr5.2:68630370-68630389 | MS.gene32515:CDS | 50.0% |
| !! | AGGCATTGATTCTGGTTGGG+GGG | + | chr5.2:68630365-68630384 | MS.gene32515:CDS | 50.0% |
| !! | GGGACTATATCACTGGCTTG+AGG | + | chr5.2:68631523-68631542 | MS.gene32515:CDS | 50.0% |
| CCAGACTCAACAATGCAGCC+AGG | - | chr5.2:68631684-68631703 | None:intergenic | 55.0% | |
| CCCCACAATGTTAGAGCCAC+CGG | - | chr5.2:68631592-68631611 | None:intergenic | 55.0% | |
| CCGATGTCCATCCAGAAACC+AGG | - | chr5.2:68631495-68631514 | None:intergenic | 55.0% | |
| CCTGGCTGCATTGTTGAGTC+TGG | + | chr5.2:68631681-68631700 | MS.gene32515:CDS | 55.0% | |
| CTTCCCCTCCATGGGATTTG+TGG | - | chr5.2:68631131-68631150 | None:intergenic | 55.0% | |
| GATGGACATCGGACAACCGA+GGG | + | chr5.2:68631503-68631522 | MS.gene32515:CDS | 55.0% | |
| GCACAGTAATGCGAGGAGTC+CGG | + | chr5.2:68631721-68631740 | MS.gene32515:CDS | 55.0% | |
| GCATTCCACTGTCGGGCAAT+GGG | + | chr5.2:68631785-68631804 | MS.gene32515:CDS | 55.0% | |
| GCTTGTCCCTAGCAAGAGCA+AGG | - | chr5.2:68631026-68631045 | None:intergenic | 55.0% | |
| GGCTTTACCTGGACTCACTG+AGG | + | chr5.2:68631544-68631563 | MS.gene32515:CDS | 55.0% | |
| TATGGAGGAGACAACAGGGC+AGG | + | chr5.2:68631299-68631318 | MS.gene32515:CDS | 55.0% | |
| TCTTCTTCGAAGTTGGCCGG+TGG | + | chr5.2:68631573-68631592 | MS.gene32515:CDS | 55.0% | |
| TGTCCCTAGCAAGAGCAAGG+GGG | - | chr5.2:68631023-68631042 | None:intergenic | 55.0% | |
| TTGGGTGGCATTCCACTGTC+GGG | + | chr5.2:68631778-68631797 | MS.gene32515:CDS | 55.0% | |
| ! | GGGGGTTTGGAACTAGGTTG+AGG | + | chr5.2:68630383-68630402 | MS.gene32515:CDS | 55.0% |
| ! | GGTCCTTCCTGGTTTCTGGA+TGG | + | chr5.2:68631485-68631504 | MS.gene32515:CDS | 55.0% |
| ! | TGGTTGGGGGGTTTGGAACT+AGG | + | chr5.2:68630377-68630396 | MS.gene32515:CDS | 55.0% |
| !! | CACTGGCTTGAGGCTTTACC+TGG | + | chr5.2:68631533-68631552 | MS.gene32515:CDS | 55.0% |
| !! | CCGGTGGCTCTAACATTGTG+GGG | + | chr5.2:68631589-68631608 | MS.gene32515:CDS | 55.0% |
| !! | GCCGGTGGCTCTAACATTGT+GGG | + | chr5.2:68631588-68631607 | MS.gene32515:CDS | 55.0% |
| !! | TGGTGTGGTTTTGCCCCACA+AGG | + | chr5.2:68631875-68631894 | MS.gene32515:CDS | 55.0% |
| AGGCCCCCTTGCTCTTGCTA+GGG | + | chr5.2:68631017-68631036 | MS.gene32515:CDS | 60.0% | |
| AGGGGGCCTGCAGTTCCTAA+TGG | - | chr5.2:68631006-68631025 | None:intergenic | 60.0% | |
| CCAGGACCGATAGCGACATC+AGG | - | chr5.2:68631666-68631685 | None:intergenic | 60.0% | |
| CCTGATGTCGCTATCGGTCC+TGG | + | chr5.2:68631663-68631682 | MS.gene32515:CDS | 60.0% | |
| GGATGGACATCGGACAACCG+AGG | + | chr5.2:68631502-68631521 | MS.gene32515:CDS | 60.0% | |
| GGCATTCCACTGTCGGGCAA+TGG | + | chr5.2:68631784-68631803 | MS.gene32515:CDS | 60.0% | |
| GGCGACTGGAGTCACTGAAG+TGG | + | chr5.2:68630762-68630781 | MS.gene32515:CDS | 60.0% | |
| TCGCGCTGCACAGTAATGCG+AGG | + | chr5.2:68631714-68631733 | MS.gene32515:CDS | 60.0% | |
| !! | GGCCGGTGGCTCTAACATTG+TGG | + | chr5.2:68631587-68631606 | MS.gene32515:CDS | 60.0% |
| CAGGCCCCCTTGCTCTTGCT+AGG | + | chr5.2:68631016-68631035 | MS.gene32515:CDS | 65.0% | |
| TCGAGCCCATTGCCCGACAG+TGG | - | chr5.2:68631793-68631812 | None:intergenic | 65.0% | |
| ! | TGTCGGGCAATGGGCTCGAG+TGG | + | chr5.2:68631794-68631813 | MS.gene32515:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 68630361 | 68631938 | 68630361 | ID=MS.gene32515 |
| chr5.2 | mRNA | 68630361 | 68631938 | 68630361 | ID=MS.gene32515.t1;Parent=MS.gene32515 |
| chr5.2 | exon | 68630361 | 68630471 | 68630361 | ID=MS.gene32515.t1.exon1;Parent=MS.gene32515.t1 |
| chr5.2 | CDS | 68630361 | 68630471 | 68630361 | ID=cds.MS.gene32515.t1;Parent=MS.gene32515.t1 |
| chr5.2 | exon | 68630748 | 68630810 | 68630748 | ID=MS.gene32515.t1.exon2;Parent=MS.gene32515.t1 |
| chr5.2 | CDS | 68630748 | 68630810 | 68630748 | ID=cds.MS.gene32515.t1;Parent=MS.gene32515.t1 |
| chr5.2 | exon | 68630931 | 68631170 | 68630931 | ID=MS.gene32515.t1.exon3;Parent=MS.gene32515.t1 |
| chr5.2 | CDS | 68630931 | 68631170 | 68630931 | ID=cds.MS.gene32515.t1;Parent=MS.gene32515.t1 |
| chr5.2 | exon | 68631267 | 68631938 | 68631267 | ID=MS.gene32515.t1.exon4;Parent=MS.gene32515.t1 |
| chr5.2 | CDS | 68631267 | 68631938 | 68631267 | ID=cds.MS.gene32515.t1;Parent=MS.gene32515.t1 |
| Gene Sequence |
| Protein sequence |
