Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32616.t1 | XP_003603420.1 | 95.8 | 330 | 5 | 2 | 1 | 321 | 1 | 330 | 1.70E-122 | 449.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32616.t1 | Q8H0V5 | 58.7 | 167 | 69 | 0 | 148 | 314 | 185 | 351 | 1.7e-46 | 188.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32616.t1 | G7JB43 | 95.8 | 330 | 5 | 2 | 1 | 321 | 1 | 330 | 1.2e-122 | 449.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene32616.t1 | TF | HB-other |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049614 | MS.gene32616 | 0.801037 | 1.09E-48 | -1.69E-46 |
| MS.gene050404 | MS.gene32616 | 0.802663 | 5.04E-49 | -1.69E-46 |
| MS.gene051617 | MS.gene32616 | 0.800954 | 1.13E-48 | -1.69E-46 |
| MS.gene052290 | MS.gene32616 | 0.801344 | 9.41E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene32616 | 0.810993 | 8.74E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene32616 | 0.802383 | 5.76E-49 | -1.69E-46 |
| MS.gene056664 | MS.gene32616 | 0.83011 | 3.53E-55 | -1.69E-46 |
| MS.gene056897 | MS.gene32616 | 0.818155 | 2.27E-52 | -1.69E-46 |
| MS.gene056903 | MS.gene32616 | 0.802554 | 5.31E-49 | -1.69E-46 |
| MS.gene058233 | MS.gene32616 | 0.800733 | 1.25E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32616.t1 | MTR_3g107530 | 90.964 | 332 | 17 | 3 | 1 | 321 | 1 | 330 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32616.t1 | AT5G11270 | 48.659 | 261 | 127 | 1 | 61 | 314 | 91 | 351 | 3.24e-67 | 214 |
Find 53 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATCTCCGGGCGTAGTTTC+AGG | 0.263805 | 3.1:+85088073 | None:intergenic |
| GGTGATACTGCTGATGGTTT+AGG | 0.275225 | 3.1:+85088094 | None:intergenic |
| TTCTCGAAAGAGATTGAAAA+AGG | 0.338696 | 3.1:-85087957 | MS.gene32616:CDS |
| GATCATGCTCATGCAGAATC+TGG | 0.343580 | 3.1:-85088028 | MS.gene32616:CDS |
| TTCGCTGCAAAGAAGAGGAT+TGG | 0.420945 | 3.1:+85089777 | None:intergenic |
| GCTGATGGTTTAGGTTCATC+AGG | 0.425177 | 3.1:+85088103 | None:intergenic |
| TTCATGACATGCAACAGAAT+TGG | 0.427701 | 3.1:-85087982 | MS.gene32616:CDS |
| TTCTTTATGAAAAGAATCTC+CGG | 0.439788 | 3.1:+85088060 | None:intergenic |
| CGCGGAGAACAGTTATTAAG+TGG | 0.452000 | 3.1:-85086856 | MS.gene32616:CDS |
| TCGCTGCAAAGAAGAGGATT+GGG | 0.456309 | 3.1:+85089778 | None:intergenic |
| TTCTGTTGCATGTCATGAAT+AGG | 0.457484 | 3.1:+85087986 | None:intergenic |
| TTGGCTAGAGCATTGAAAAC+TGG | 0.460688 | 3.1:-85089224 | MS.gene32616:CDS |
| ATAGGTAAGTTAGACTTCTT+CGG | 0.466152 | 3.1:+85088004 | None:intergenic |
| CGTGAGTTGGAAGGTGTGTT+GGG | 0.479759 | 3.1:-85089371 | MS.gene32616:CDS |
| TCATTAGCAGACTGCTGGTA+AGG | 0.483094 | 3.1:+85086788 | None:intergenic |
| TTGTTTCATTAGCAGACTGC+TGG | 0.483884 | 3.1:+85086783 | None:intergenic |
| TGTTTGAAAAGCAACTCAAA+TGG | 0.492775 | 3.1:+85089494 | None:intergenic |
| ATTCGCTGAAGCTTAGAACT+TGG | 0.492933 | 3.1:-85089259 | MS.gene32616:CDS |
| AAAGGCTTACACTTAGTTTG+CGG | 0.505407 | 3.1:+85089198 | None:intergenic |
| TGCTTTGTTAGAACGTGAGT+TGG | 0.513640 | 3.1:-85089384 | MS.gene32616:CDS |
| CTCAGCATCAGAAGACTTGG+TGG | 0.517452 | 3.1:+85088136 | None:intergenic |
| AGCTCTATCAAGACAGAGCT+CGG | 0.525713 | 3.1:+85088186 | None:intergenic |
| AGAGCGAGAAGGAAGAGTGA+AGG | 0.528288 | 3.1:+85089739 | None:intergenic |
| ACGTGAGTTGGAAGGTGTGT+TGG | 0.531369 | 3.1:-85089372 | MS.gene32616:CDS |
| AGAGTGAAGGAGAAGAGAAG+AGG | 0.540225 | 3.1:+85089752 | None:intergenic |
| AGACAAACGTGCCGAGGAGG+GGG | 0.542683 | 3.1:-85086828 | MS.gene32616:CDS |
| GTTTCAGGTGATACTGCTGA+TGG | 0.555775 | 3.1:+85088088 | None:intergenic |
| AGGCTCAGCATCAGAAGACT+TGG | 0.557597 | 3.1:+85088133 | None:intergenic |
| CGGTGACAATTGAAGAGTAG+AGG | 0.560168 | 3.1:+85089711 | None:intergenic |
| TGGTAAGGAAGACGATGCTC+TGG | 0.560826 | 3.1:+85086803 | None:intergenic |
| AAATTGACTCATGTTACAGA+GGG | 0.567201 | 3.1:-85089533 | MS.gene32616:CDS |
| AACTTGGCAATTGAATACAT+TGG | 0.575518 | 3.1:-85089243 | MS.gene32616:CDS |
| AGCATCAGAAGACTTGGTGG+AGG | 0.576518 | 3.1:+85088139 | None:intergenic |
| TAGGTTCATCAGGAATCGAT+AGG | 0.584575 | 3.1:+85088113 | None:intergenic |
| TCTTTATGAAAAGAATCTCC+GGG | 0.584998 | 3.1:+85088061 | None:intergenic |
| GTATCACCTGAAACTACGCC+CGG | 0.589871 | 3.1:-85088079 | MS.gene32616:CDS |
| GAAGACAAACGTGCCGAGGA+GGG | 0.595141 | 3.1:-85086830 | MS.gene32616:CDS |
| CAGTGTTTAGTCACAGTCAG+AGG | 0.597333 | 3.1:-85089803 | MS.gene32616:CDS |
| AAAGGCTCAACTTGACACGC+TGG | 0.611700 | 3.1:-85087939 | MS.gene32616:CDS |
| TTGTTAGAACGTGAGTTGGA+AGG | 0.619119 | 3.1:-85089380 | MS.gene32616:CDS |
| TGAAGACAAACGTGCCGAGG+AGG | 0.619168 | 3.1:-85086831 | MS.gene32616:CDS |
| AAGACAAACGTGCCGAGGAG+GGG | 0.620622 | 3.1:-85086829 | MS.gene32616:CDS |
| TGCATGTTTCAAACATTCCG+CGG | 0.630435 | 3.1:-85086874 | MS.gene32616:CDS |
| GACTAAACACTGATTCGCGA+CGG | 0.635511 | 3.1:+85089814 | None:intergenic |
| AAAATTGACTCATGTTACAG+AGG | 0.638213 | 3.1:-85089534 | MS.gene32616:CDS |
| GCATCAGAAGACTTGGTGGA+GGG | 0.649310 | 3.1:+85088140 | None:intergenic |
| GTTTGAAGACAAACGTGCCG+AGG | 0.651860 | 3.1:-85086834 | MS.gene32616:CDS |
| TGTTACAGAGGGGAATGACG+AGG | 0.686418 | 3.1:-85089522 | MS.gene32616:CDS |
| TACAGAGGGGAATGACGAGG+AGG | 0.700089 | 3.1:-85089519 | MS.gene32616:CDS |
| ACAGATATCAGCGAAACACA+AGG | 0.708447 | 3.1:-85089323 | MS.gene32616:CDS |
| CACTTAATAACTGTTCTCCG+CGG | 0.713242 | 3.1:+85086857 | None:intergenic |
| GAGTTTACATGAGATCAAAG+CGG | 0.731573 | 3.1:-85087913 | MS.gene32616:CDS |
| AATTGACTCATGTTACAGAG+GGG | 0.739510 | 3.1:-85089532 | MS.gene32616:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGCATAGAATAATAAATT+AGG | + | chr3.1:85087017-85087036 | None:intergenic | 15.0% |
| !! | AATTAAACTCAAAACAAATT+AGG | + | chr3.1:85087442-85087461 | None:intergenic | 15.0% |
| !! | AATTTAATAGTGAGATTTAT+TGG | + | chr3.1:85089406-85089425 | None:intergenic | 15.0% |
| !! | CTAAAAATACAAAATTCAAA+AGG | + | chr3.1:85087419-85087438 | None:intergenic | 15.0% |
| !! | ACATTTGATATATTTAGCAT+CGG | - | chr3.1:85089212-85089231 | MS.gene32616:CDS | 20.0% |
| !! | GAATAAAAAGTTTAAGCAAA+TGG | + | chr3.1:85087777-85087796 | None:intergenic | 20.0% |
| !! | TATGAATCATTGAATTGTAT+TGG | + | chr3.1:85086983-85087002 | None:intergenic | 20.0% |
| !! | TTAATTCATATATACAACGT+TGG | + | chr3.1:85087523-85087542 | None:intergenic | 20.0% |
| !! | TTCCAAAAAGAAAAACAATA+AGG | - | chr3.1:85086912-85086931 | MS.gene32616:intron | 20.0% |
| !! | TTTATATTAAGAATCTCAGA+TGG | - | chr3.1:85088181-85088200 | MS.gene32616:CDS | 20.0% |
| !!! | AACCTTATTGTTTTTCTTTT+TGG | + | chr3.1:85086917-85086936 | None:intergenic | 20.0% |
| !!! | AAGATTTTACTAGTTATGTA+TGG | + | chr3.1:85088826-85088845 | None:intergenic | 20.0% |
| ! | AAACTTGTGATATTGAAGTA+TGG | + | chr3.1:85088729-85088748 | None:intergenic | 25.0% |
| ! | AATAGAATATATGCACAAAG+AGG | + | chr3.1:85089520-85089539 | None:intergenic | 25.0% |
| ! | AATGATGTAGAAAAAAGTAG+TGG | - | chr3.1:85087300-85087319 | MS.gene32616:intron | 25.0% |
| ! | AATGTTAGTAGTTAGTTAGT+TGG | - | chr3.1:85087908-85087927 | MS.gene32616:CDS | 25.0% |
| ! | AATTGTATTGGATTTGGATT+TGG | + | chr3.1:85086971-85086990 | None:intergenic | 25.0% |
| ! | ACATAACTTCTGATTTAAGA+GGG | + | chr3.1:85088913-85088932 | None:intergenic | 25.0% |
| ! | AGTTAACAAGTTGTGAAATA+AGG | + | chr3.1:85089642-85089661 | None:intergenic | 25.0% |
| ! | ATATATACAACGTTGGTATT+TGG | + | chr3.1:85087516-85087535 | None:intergenic | 25.0% |
| ! | ATGATATGAATAGGATTACT+TGG | - | chr3.1:85087620-85087639 | MS.gene32616:intron | 25.0% |
| ! | TAGTATATTTGCCTTTAATC+AGG | + | chr3.1:85088077-85088096 | None:intergenic | 25.0% |
| ! | TCATTGAATTGTATTGGATT+TGG | + | chr3.1:85086977-85086996 | None:intergenic | 25.0% |
| ! | TTCTTTATGAAAAGAATCTC+CGG | + | chr3.1:85088539-85088558 | None:intergenic | 25.0% |
| !! | CTAGTTGATATATTAAAGAG+TGG | - | chr3.1:85088094-85088113 | MS.gene32616:CDS | 25.0% |
| !! | CTTCAATATCACAAGTTTTA+TGG | - | chr3.1:85088731-85088750 | MS.gene32616:intron | 25.0% |
| !! | GTGACTTTTTAATCTAATGA+TGG | - | chr3.1:85089440-85089459 | MS.gene32616:CDS | 25.0% |
| !!! | ATTGTTTTTCTTTTTGGAAG+AGG | + | chr3.1:85086911-85086930 | None:intergenic | 25.0% |
| AAATGCAGATCATATCATAC+AGG | + | chr3.1:85087695-85087714 | None:intergenic | 30.0% | |
| AAATGGGGTAAATGTCATAT+AGG | - | chr3.1:85089187-85089206 | MS.gene32616:intron | 30.0% | |
| AACTTGGCAATTGAATACAT+TGG | - | chr3.1:85087353-85087372 | MS.gene32616:intron | 30.0% | |
| AATGCTATAATATGCAGTGA+TGG | + | chr3.1:85089568-85089587 | None:intergenic | 30.0% | |
| AATGGGGTAAATGTCATATA+GGG | - | chr3.1:85089188-85089207 | MS.gene32616:intron | 30.0% | |
| ATAGGTAAGTTAGACTTCTT+CGG | + | chr3.1:85088595-85088614 | None:intergenic | 30.0% | |
| ATCATACAGGTATTTCATGT+AGG | + | chr3.1:85087682-85087701 | None:intergenic | 30.0% | |
| ATGGCAAGTTTAACTATGTA+TGG | + | chr3.1:85088768-85088787 | None:intergenic | 30.0% | |
| CCTTATCAATGAATGACAAA+AGG | + | chr3.1:85087851-85087870 | None:intergenic | 30.0% | |
| GACATAACTTCTGATTTAAG+AGG | + | chr3.1:85088914-85088933 | None:intergenic | 30.0% | |
| GTGTATCAGATGATATGAAT+AGG | - | chr3.1:85087611-85087630 | MS.gene32616:intron | 30.0% | |
| TCTTAAACACTTGTCTTGTA+TGG | + | chr3.1:85087726-85087745 | None:intergenic | 30.0% | |
| TCTTTATGAAAAGAATCTCC+GGG | + | chr3.1:85088538-85088557 | None:intergenic | 30.0% | |
| TGATGCTTGTATTAGTATTC+TGG | - | chr3.1:85088952-85088971 | MS.gene32616:intron | 30.0% | |
| TGGACGACTTGAAAATAAAT+GGG | - | chr3.1:85089171-85089190 | MS.gene32616:intron | 30.0% | |
| TGTTTGAAAAGCAACTCAAA+TGG | + | chr3.1:85087105-85087124 | None:intergenic | 30.0% | |
| TTAACATGTATTGCAAGTCT+TGG | + | chr3.1:85089108-85089127 | None:intergenic | 30.0% | |
| TTAAGAAACCAAAATGCTTG+TGG | - | chr3.1:85087740-85087759 | MS.gene32616:intron | 30.0% | |
| TTATCTGCAACAAATTCGAA+AGG | + | chr3.1:85088378-85088397 | None:intergenic | 30.0% | |
| TTCTCGAAAGAGATTGAAAA+AGG | - | chr3.1:85088639-85088658 | MS.gene32616:intron | 30.0% | |
| ! | AAAATTGACTCATGTTACAG+AGG | - | chr3.1:85087062-85087081 | MS.gene32616:intron | 30.0% |
| ! | AAATTGACTCATGTTACAGA+GGG | - | chr3.1:85087063-85087082 | MS.gene32616:intron | 30.0% |
| ! | ATACATCCAAGTTGAAGTTA+AGG | + | chr3.1:85088151-85088170 | None:intergenic | 30.0% |
| ! | ATTGGATTTGGATTTGGAAT+TGG | + | chr3.1:85086965-85086984 | None:intergenic | 30.0% |
| ! | CCTTTTGTCATTCATTGATA+AGG | - | chr3.1:85087848-85087867 | MS.gene32616:intron | 30.0% |
| !! | AGTGAGATTTATTGGTTCAA+TGG | + | chr3.1:85089398-85089417 | None:intergenic | 30.0% |
| !!! | TTACTTTTTCTTGTCCCTAA+AGG | + | chr3.1:85088028-85088047 | None:intergenic | 30.0% |
| ACCTTATATGCTTCTTTGTG+CGG | - | chr3.1:85089315-85089334 | MS.gene32616:CDS | 35.0% | |
| AGCATACATGATGATACAAC+TGG | + | chr3.1:85089002-85089021 | None:intergenic | 35.0% | |
| AGGAGAAGGAAAAAGTAAAC+TGG | - | chr3.1:85087868-85087887 | MS.gene32616:intron | 35.0% | |
| AGTAGTTAGTTAGTTGGTCA+GGG | - | chr3.1:85087914-85087933 | MS.gene32616:CDS | 35.0% | |
| ATGGGGTAAATGTCATATAG+GGG | - | chr3.1:85089189-85089208 | MS.gene32616:intron | 35.0% | |
| CAAACACCTTAACTTCAACT+TGG | - | chr3.1:85088142-85088161 | MS.gene32616:CDS | 35.0% | |
| CAATCCCTAATGTTAACTTC+CGG | - | chr3.1:85088334-85088353 | MS.gene32616:intron | 35.0% | |
| GAGTTTACATGAGATCAAAG+CGG | - | chr3.1:85088683-85088702 | MS.gene32616:intron | 35.0% | |
| GCATACATGATGATACAACT+GGG | + | chr3.1:85089001-85089020 | None:intergenic | 35.0% | |
| GGACGACTTGAAAATAAATG+GGG | - | chr3.1:85089172-85089191 | MS.gene32616:intron | 35.0% | |
| GGTGTTTGCAAGCAAATTAA+CGG | + | chr3.1:85088130-85088149 | None:intergenic | 35.0% | |
| GTCATTCATTGATAAGGAGA+AGG | - | chr3.1:85087854-85087873 | MS.gene32616:intron | 35.0% | |
| GTGGACGACTTGAAAATAAA+TGG | - | chr3.1:85089170-85089189 | MS.gene32616:intron | 35.0% | |
| TAGTAGTTAGTTAGTTGGTC+AGG | - | chr3.1:85087913-85087932 | MS.gene32616:CDS | 35.0% | |
| TCATCTGATACACTTAGTTG+TGG | + | chr3.1:85087604-85087623 | None:intergenic | 35.0% | |
| TTCATGACATGCAACAGAAT+TGG | - | chr3.1:85088614-85088633 | MS.gene32616:intron | 35.0% | |
| TTCTGTTGCATGTCATGAAT+AGG | + | chr3.1:85088613-85088632 | None:intergenic | 35.0% | |
| ! | AAAGGCTTACACTTAGTTTG+CGG | + | chr3.1:85087401-85087420 | None:intergenic | 35.0% |
| ! | AATTGACTCATGTTACAGAG+GGG | - | chr3.1:85087064-85087083 | MS.gene32616:intron | 35.0% |
| ! | ACTGTTTTCCACAAGCATTT+TGG | + | chr3.1:85087751-85087770 | None:intergenic | 35.0% |
| ! | ATGGCAAGTTTAACTTACAG+TGG | + | chr3.1:85088710-85088729 | None:intergenic | 35.0% |
| ! | CAAAGAAGCATATAAGGTGA+TGG | + | chr3.1:85089313-85089332 | None:intergenic | 35.0% |
| ! | TACTTGGTTTGAGTATGAAG+AGG | - | chr3.1:85087636-85087655 | MS.gene32616:intron | 35.0% |
| ! | TGGCAAGTTTAACTTACAGT+GGG | + | chr3.1:85088709-85088728 | None:intergenic | 35.0% |
| !! | GAGATTTATTGGTTCAATGG+TGG | + | chr3.1:85089395-85089414 | None:intergenic | 35.0% |
| !! | GTTTTTCTTTTTGGAAGAGG+CGG | + | chr3.1:85086908-85086927 | None:intergenic | 35.0% |
| !! | TACACTCCATTTTTCTAGTC+CGG | - | chr3.1:85088879-85088898 | MS.gene32616:intron | 35.0% |
| AAACAGGAAATGCTAGTAGG+AGG | - | chr3.1:85087938-85087957 | MS.gene32616:CDS | 40.0% | |
| AAAGGAGTAGTGTAGTGGTT+TGG | + | chr3.1:85088010-85088029 | None:intergenic | 40.0% | |
| AAAGTGACAAGCATGTGTCT+TGG | - | chr3.1:85089589-85089608 | MS.gene32616:intron | 40.0% | |
| AACAGGAAATGCTAGTAGGA+GGG | - | chr3.1:85087939-85087958 | MS.gene32616:CDS | 40.0% | |
| AACCACTACACTACTCCTTT+AGG | - | chr3.1:85088010-85088029 | MS.gene32616:CDS | 40.0% | |
| AATGACAAAAGGCCAAGTCA+AGG | + | chr3.1:85087840-85087859 | None:intergenic | 40.0% | |
| ACAGATATCAGCGAAACACA+AGG | - | chr3.1:85087273-85087292 | MS.gene32616:intron | 40.0% | |
| ACCACTACACTACTCCTTTA+GGG | - | chr3.1:85088011-85088030 | MS.gene32616:CDS | 40.0% | |
| ATAAAGCGAGAAGGAAAGAG+AGG | - | chr3.1:85088256-85088275 | MS.gene32616:intron | 40.0% | |
| ATTCGCTGAAGCTTAGAACT+TGG | - | chr3.1:85087337-85087356 | MS.gene32616:intron | 40.0% | |
| ATTTAAGAGGGAATTGCTGC+CGG | + | chr3.1:85088901-85088920 | None:intergenic | 40.0% | |
| CACTTAATAACTGTTCTCCG+CGG | + | chr3.1:85089742-85089761 | None:intergenic | 40.0% | |
| CATTGTAGTTCAAGACAGAC+AGG | + | chr3.1:85089677-85089696 | None:intergenic | 40.0% | |
| CTCCTGCTTAGAACTTCTTT+GGG | - | chr3.1:85087976-85087995 | MS.gene32616:CDS | 40.0% | |
| GAGTCCGGAAGTTAACATTA+GGG | + | chr3.1:85088341-85088360 | None:intergenic | 40.0% | |
| GGAAAACAGGAAATGCTAGT+AGG | - | chr3.1:85087935-85087954 | MS.gene32616:CDS | 40.0% | |
| GTAAACTTGATAGATCAGCC+AGG | - | chr3.1:85088044-85088063 | MS.gene32616:CDS | 40.0% | |
| GTAGAAAAAAGTAGTGGCGA+TGG | - | chr3.1:85087306-85087325 | MS.gene32616:intron | 40.0% | |
| GTGAAACTGAGAAATGAGTC+CGG | + | chr3.1:85088356-85088375 | None:intergenic | 40.0% | |
| GTTCATGTGATAAAGCGAGA+AGG | - | chr3.1:85088247-85088266 | MS.gene32616:intron | 40.0% | |
| TAAAGCGAGAAGGAAAGAGA+GGG | - | chr3.1:85088257-85088276 | MS.gene32616:intron | 40.0% | |
| TAGGTTCATCAGGAATCGAT+AGG | + | chr3.1:85088486-85088505 | None:intergenic | 40.0% | |
| TAGTTCAAGACAGACAGGTA+AGG | + | chr3.1:85089672-85089691 | None:intergenic | 40.0% | |
| TCAAGCTAAGTGTCATATCG+TGG | - | chr3.1:85089151-85089170 | MS.gene32616:intron | 40.0% | |
| TCACTTGTGCACCATAGAAT+TGG | + | chr3.1:85089341-85089360 | None:intergenic | 40.0% | |
| TCCTGCTTAGAACTTCTTTG+GGG | - | chr3.1:85087977-85087996 | MS.gene32616:CDS | 40.0% | |
| TGAGTCCGGAAGTTAACATT+AGG | + | chr3.1:85088342-85088361 | None:intergenic | 40.0% | |
| TGCATGTTTCAAACATTCCG+CGG | - | chr3.1:85089722-85089741 | MS.gene32616:CDS | 40.0% | |
| TTGTTTCATTAGCAGACTGC+TGG | + | chr3.1:85089816-85089835 | None:intergenic | 40.0% | |
| ! | AAGGTGATGGTTGACATTGT+GGG | + | chr3.1:85089300-85089319 | None:intergenic | 40.0% |
| ! | ACGATATGACACTTAGCTTG+AGG | + | chr3.1:85089152-85089171 | None:intergenic | 40.0% |
| ! | AGTAGTGTAGTGGTTTGGAT+TGG | + | chr3.1:85088005-85088024 | None:intergenic | 40.0% |
| ! | CAAAGAGGCTTTGTCTAACA+TGG | + | chr3.1:85089505-85089524 | None:intergenic | 40.0% |
| ! | TAAGGTGATGGTTGACATTG+TGG | + | chr3.1:85089301-85089320 | None:intergenic | 40.0% |
| ! | TGCTTTGTTAGAACGTGAGT+TGG | - | chr3.1:85087212-85087231 | MS.gene32616:intron | 40.0% |
| ! | TTGTTAGAACGTGAGTTGGA+AGG | - | chr3.1:85087216-85087235 | MS.gene32616:intron | 40.0% |
| !! | AGATGGATTTTCCTTGCAAG+GGG | - | chr3.1:85088198-85088217 | MS.gene32616:CDS | 40.0% |
| !! | CAGATGGATTTTCCTTGCAA+GGG | - | chr3.1:85088197-85088216 | MS.gene32616:CDS | 40.0% |
| !! | TCAGATGGATTTTCCTTGCA+AGG | - | chr3.1:85088196-85088215 | MS.gene32616:CDS | 40.0% |
| !! | TCTGATTTGCTTCCTTGACT+TGG | - | chr3.1:85087825-85087844 | MS.gene32616:intron | 40.0% |
| !! | TTGGCTAGAGCATTGAAAAC+TGG | - | chr3.1:85087372-85087391 | MS.gene32616:intron | 40.0% |
| ACTTGATAGATCAGCCAGGT+TGG | - | chr3.1:85088048-85088067 | MS.gene32616:CDS | 45.0% | |
| AGAGTGAAGGAGAAGAGAAG+AGG | + | chr3.1:85086847-85086866 | None:intergenic | 45.0% | |
| AGCTCTATCAAGACAGAGCT+CGG | + | chr3.1:85088413-85088432 | None:intergenic | 45.0% | |
| ATTGAGCAGACAACTAGCAC+AGG | + | chr3.1:85088318-85088337 | None:intergenic | 45.0% | |
| CAGTGTTTAGTCACAGTCAG+AGG | - | chr3.1:85086793-85086812 | MS.gene32616:CDS | 45.0% | |
| CCTCCTGCTTAGAACTTCTT+TGG | - | chr3.1:85087975-85087994 | MS.gene32616:CDS | 45.0% | |
| CGCGGAGAACAGTTATTAAG+TGG | - | chr3.1:85089740-85089759 | MS.gene32616:CDS | 45.0% | |
| CGGTGACAATTGAAGAGTAG+AGG | + | chr3.1:85086888-85086907 | None:intergenic | 45.0% | |
| CTTGATAGATCAGCCAGGTT+GGG | - | chr3.1:85088049-85088068 | MS.gene32616:CDS | 45.0% | |
| GATCATGCTCATGCAGAATC+TGG | - | chr3.1:85088568-85088587 | MS.gene32616:intron | 45.0% | |
| GGTGATACTGCTGATGGTTT+AGG | + | chr3.1:85088505-85088524 | None:intergenic | 45.0% | |
| GTTAGTTGGTCAGGGAAAAC+AGG | - | chr3.1:85087922-85087941 | MS.gene32616:CDS | 45.0% | |
| TCATTAGCAGACTGCTGGTA+AGG | + | chr3.1:85089811-85089830 | None:intergenic | 45.0% | |
| TCCCTAAAGGAGTAGTGTAG+TGG | + | chr3.1:85088015-85088034 | None:intergenic | 45.0% | |
| TCGCTGCAAAGAAGAGGATT+GGG | + | chr3.1:85086821-85086840 | None:intergenic | 45.0% | |
| TCTTTGTGCGGCCAATTCTA+TGG | - | chr3.1:85089327-85089346 | MS.gene32616:CDS | 45.0% | |
| TTCGCTGCAAAGAAGAGGAT+TGG | + | chr3.1:85086822-85086841 | None:intergenic | 45.0% | |
| TTGATAGATCAGCCAGGTTG+GGG | - | chr3.1:85088050-85088069 | MS.gene32616:CDS | 45.0% | |
| ! | AGGTTTTCGCTGCAAAGAAG+AGG | + | chr3.1:85086827-85086846 | None:intergenic | 45.0% |
| ! | GCCGCACAAAGAAGCATATA+AGG | + | chr3.1:85089319-85089338 | None:intergenic | 45.0% |
| ! | GCTGATGGTTTAGGTTCATC+AGG | + | chr3.1:85088496-85088515 | None:intergenic | 45.0% |
| ! | GTTTCAGGTGATACTGCTGA+TGG | + | chr3.1:85088511-85088530 | None:intergenic | 45.0% |
| ! | TTGCTGCCGGACTAGAAAAA+TGG | + | chr3.1:85088888-85088907 | None:intergenic | 45.0% |
| !! | AAGTTCTAAGCAGGAGGTCT+AGG | + | chr3.1:85087972-85087991 | None:intergenic | 45.0% |
| !! | ACCCCAAAGAAGTTCTAAGC+AGG | + | chr3.1:85087981-85088000 | None:intergenic | 45.0% |
| !! | AGTTCTAAGCAGGAGGTCTA+GGG | + | chr3.1:85087971-85087990 | None:intergenic | 45.0% |
| !! | CCAAAGAAGTTCTAAGCAGG+AGG | + | chr3.1:85087978-85087997 | None:intergenic | 45.0% |
| !! | GACTAAACACTGATTCGCGA+CGG | + | chr3.1:85086785-85086804 | None:intergenic | 45.0% |
| !!! | TAGAGGTTTTGAGAGCGAGA+AGG | + | chr3.1:85086871-85086890 | None:intergenic | 45.0% |
| AAAGGCTCAACTTGACACGC+TGG | - | chr3.1:85088657-85088676 | MS.gene32616:intron | 50.0% | |
| AGAGCGAGAAGGAAGAGTGA+AGG | + | chr3.1:85086860-85086879 | None:intergenic | 50.0% | |
| AGGCTCAGCATCAGAAGACT+TGG | + | chr3.1:85088466-85088485 | None:intergenic | 50.0% | |
| CTCAGCATCAGAAGACTTGG+TGG | + | chr3.1:85088463-85088482 | None:intergenic | 50.0% | |
| CTTTAATCAGGACCCCAACC+TGG | + | chr3.1:85088065-85088084 | None:intergenic | 50.0% | |
| GTATCACCTGAAACTACGCC+CGG | - | chr3.1:85088517-85088536 | MS.gene32616:intron | 50.0% | |
| GTGATGGTTGACATTGTGGG+AGG | + | chr3.1:85089297-85089316 | None:intergenic | 50.0% | |
| GTTTGAAGACAAACGTGCCG+AGG | - | chr3.1:85089762-85089781 | MS.gene32616:CDS | 50.0% | |
| TCAAACTTGCACCCCTTGCA+AGG | + | chr3.1:85088212-85088231 | None:intergenic | 50.0% | |
| TGGTAAGGAAGACGATGCTC+TGG | + | chr3.1:85089796-85089815 | None:intergenic | 50.0% | |
| TGTTACAGAGGGGAATGACG+AGG | - | chr3.1:85087074-85087093 | MS.gene32616:intron | 50.0% | |
| ! | ACGTGAGTTGGAAGGTGTGT+TGG | - | chr3.1:85087224-85087243 | MS.gene32616:intron | 50.0% |
| ! | CAGGTTGGGGTCCTGATTAA+AGG | - | chr3.1:85088063-85088082 | MS.gene32616:CDS | 50.0% |
| ! | CGTGAGTTGGAAGGTGTGTT+GGG | - | chr3.1:85087225-85087244 | MS.gene32616:intron | 50.0% |
| ! | TGCAAGGGGTGCAAGTTTGA+AGG | - | chr3.1:85088212-85088231 | MS.gene32616:intron | 50.0% |
| !! | AGCATCAGAAGACTTGGTGG+AGG | + | chr3.1:85088460-85088479 | None:intergenic | 50.0% |
| !! | GCATCAGAAGACTTGGTGGA+GGG | + | chr3.1:85088459-85088478 | None:intergenic | 50.0% |
| AAGACAAACGTGCCGAGGAG+GGG | - | chr3.1:85089767-85089786 | MS.gene32616:CDS | 55.0% | |
| GAAGACAAACGTGCCGAGGA+GGG | - | chr3.1:85089766-85089785 | MS.gene32616:CDS | 55.0% | |
| GAATCTCCGGGCGTAGTTTC+AGG | + | chr3.1:85088526-85088545 | None:intergenic | 55.0% | |
| TACAGAGGGGAATGACGAGG+AGG | - | chr3.1:85087077-85087096 | MS.gene32616:intron | 55.0% | |
| TGAAGACAAACGTGCCGAGG+AGG | - | chr3.1:85089765-85089784 | MS.gene32616:CDS | 55.0% | |
| AGACAAACGTGCCGAGGAGG+GGG | - | chr3.1:85089768-85089787 | MS.gene32616:CDS | 60.0% | |
| !! | ATGCTCTGGAACCCCCTCCT+CGG | + | chr3.1:85089782-85089801 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 85086778 | 85089840 | 85086778 | ID=MS.gene32616 |
| chr3.1 | mRNA | 85086778 | 85089840 | 85086778 | ID=MS.gene32616.t1;Parent=MS.gene32616 |
| chr3.1 | exon | 85089685 | 85089840 | 85089685 | ID=MS.gene32616.t1.exon1;Parent=MS.gene32616.t1 |
| chr3.1 | CDS | 85089685 | 85089840 | 85089685 | ID=cds.MS.gene32616.t1;Parent=MS.gene32616.t1 |
| chr3.1 | exon | 85089208 | 85089558 | 85089208 | ID=MS.gene32616.t1.exon2;Parent=MS.gene32616.t1 |
| chr3.1 | CDS | 85089208 | 85089558 | 85089208 | ID=cds.MS.gene32616.t1;Parent=MS.gene32616.t1 |
| chr3.1 | exon | 85087907 | 85088224 | 85087907 | ID=MS.gene32616.t1.exon3;Parent=MS.gene32616.t1 |
| chr3.1 | CDS | 85087907 | 85088224 | 85087907 | ID=cds.MS.gene32616.t1;Parent=MS.gene32616.t1 |
| chr3.1 | exon | 85086778 | 85086918 | 85086778 | ID=MS.gene32616.t1.exon4;Parent=MS.gene32616.t1 |
| chr3.1 | CDS | 85086778 | 85086918 | 85086778 | ID=cds.MS.gene32616.t1;Parent=MS.gene32616.t1 |
| Gene Sequence |
| Protein sequence |
