Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32915.t1 | XP_013461731.1 | 94.3 | 352 | 20 | 0 | 1 | 352 | 1 | 352 | 5.50E-183 | 650.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32915.t1 | Q9FMH5 | 55.0 | 353 | 146 | 4 | 1 | 351 | 11 | 352 | 2.5e-99 | 363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32915.t1 | G8A2C7 | 94.3 | 352 | 20 | 0 | 1 | 352 | 1 | 352 | 3.9e-183 | 650.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04972 | MS.gene32915 | 0.800724 | 1.26E-48 | -1.69E-46 |
| MS.gene049989 | MS.gene32915 | 0.81862 | 1.78E-52 | -1.69E-46 |
| MS.gene050297 | MS.gene32915 | 0.813727 | 2.21E-51 | -1.69E-46 |
| MS.gene050648 | MS.gene32915 | 0.804384 | 2.22E-49 | -1.69E-46 |
| MS.gene05124 | MS.gene32915 | 0.811231 | 7.76E-51 | -1.69E-46 |
| MS.gene051263 | MS.gene32915 | 0.803492 | 3.40E-49 | -1.69E-46 |
| MS.gene053416 | MS.gene32915 | 0.804566 | 2.03E-49 | -1.69E-46 |
| MS.gene053417 | MS.gene32915 | 0.80289 | 4.53E-49 | -1.69E-46 |
| MS.gene05640 | MS.gene32915 | 0.809448 | 1.88E-50 | -1.69E-46 |
| MS.gene059553 | MS.gene32915 | 0.810278 | 1.25E-50 | -1.69E-46 |
| MS.gene060565 | MS.gene32915 | 0.803449 | 3.47E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene32915 | 0.846152 | 2.60E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32915.t1 | MTR_3g102530 | 94.318 | 352 | 20 | 0 | 1 | 352 | 1 | 352 | 0.0 | 682 |
| MS.gene32915.t1 | MTR_3g102520 | 68.802 | 359 | 105 | 3 | 1 | 352 | 1 | 359 | 1.77e-176 | 494 |
| MS.gene32915.t1 | MTR_3g102510 | 68.524 | 359 | 87 | 5 | 1 | 352 | 1 | 340 | 4.31e-173 | 484 |
| MS.gene32915.t1 | MTR_1g018680 | 53.890 | 347 | 157 | 1 | 4 | 350 | 14 | 357 | 3.60e-121 | 354 |
| MS.gene32915.t1 | MTR_3g102560 | 51.429 | 350 | 142 | 5 | 1 | 349 | 2 | 324 | 2.27e-109 | 322 |
| MS.gene32915.t1 | MTR_3g102540 | 56.870 | 262 | 107 | 3 | 88 | 349 | 13 | 268 | 1.82e-95 | 285 |
| MS.gene32915.t1 | MTR_3g107970 | 49.621 | 264 | 131 | 1 | 79 | 342 | 208 | 469 | 7.15e-85 | 265 |
| MS.gene32915.t1 | MTR_1g011470 | 49.049 | 263 | 132 | 1 | 80 | 342 | 157 | 417 | 1.10e-82 | 258 |
| MS.gene32915.t1 | MTR_3g088415 | 45.196 | 281 | 150 | 2 | 72 | 350 | 226 | 504 | 1.20e-81 | 257 |
| MS.gene32915.t1 | MTR_3g088405 | 46.642 | 268 | 139 | 2 | 84 | 349 | 243 | 508 | 6.04e-80 | 253 |
| MS.gene32915.t1 | MTR_2g102520 | 45.105 | 286 | 152 | 3 | 66 | 349 | 197 | 479 | 1.87e-74 | 238 |
| MS.gene32915.t1 | MTR_2g102550 | 43.662 | 284 | 157 | 2 | 66 | 349 | 149 | 429 | 6.78e-74 | 235 |
| MS.gene32915.t1 | MTR_3g088415 | 47.465 | 217 | 110 | 2 | 72 | 286 | 226 | 440 | 2.85e-66 | 216 |
| MS.gene32915.t1 | MTR_3g088415 | 50.000 | 162 | 77 | 2 | 72 | 231 | 226 | 385 | 3.41e-48 | 167 |
| MS.gene32915.t1 | MTR_8g074000 | 31.672 | 341 | 205 | 9 | 6 | 336 | 97 | 419 | 2.10e-45 | 160 |
| MS.gene32915.t1 | MTR_5g088980 | 38.710 | 217 | 127 | 3 | 112 | 327 | 189 | 400 | 9.45e-44 | 156 |
| MS.gene32915.t1 | MTR_5g023790 | 33.117 | 308 | 180 | 6 | 39 | 336 | 124 | 415 | 1.62e-43 | 155 |
| MS.gene32915.t1 | MTR_7g089080 | 34.672 | 274 | 164 | 5 | 78 | 339 | 180 | 450 | 1.22e-41 | 155 |
| MS.gene32915.t1 | MTR_5g023790 | 34.866 | 261 | 144 | 6 | 39 | 289 | 124 | 368 | 2.45e-39 | 143 |
| MS.gene32915.t1 | MTR_5g023790 | 35.096 | 208 | 115 | 4 | 39 | 236 | 124 | 321 | 6.26e-29 | 115 |
| MS.gene32915.t1 | MTR_3g060770 | 33.333 | 225 | 133 | 7 | 119 | 338 | 60 | 272 | 1.56e-25 | 104 |
| MS.gene32915.t1 | MTR_3g060410 | 34.171 | 199 | 122 | 5 | 115 | 308 | 131 | 325 | 6.13e-24 | 101 |
| MS.gene32915.t1 | MTR_3g061680 | 34.872 | 195 | 118 | 5 | 115 | 304 | 46 | 236 | 4.47e-23 | 97.4 |
| MS.gene32915.t1 | MTR_3g060820 | 33.846 | 195 | 120 | 5 | 115 | 304 | 46 | 236 | 2.68e-21 | 92.4 |
| MS.gene32915.t1 | MTR_3g060400 | 31.034 | 203 | 123 | 6 | 115 | 308 | 52 | 246 | 4.72e-19 | 86.3 |
| MS.gene32915.t1 | MTR_3g460990 | 31.034 | 203 | 123 | 6 | 115 | 308 | 52 | 246 | 4.72e-19 | 86.3 |
| MS.gene32915.t1 | MTR_5g044040 | 41.772 | 79 | 46 | 0 | 141 | 219 | 7 | 85 | 3.62e-14 | 68.9 |
| MS.gene32915.t1 | MTR_1g032850 | 30.818 | 159 | 102 | 4 | 120 | 275 | 372 | 525 | 1.03e-11 | 66.2 |
| MS.gene32915.t1 | MTR_5g015670 | 33.333 | 132 | 78 | 4 | 118 | 241 | 101 | 230 | 1.30e-11 | 65.5 |
| MS.gene32915.t1 | MTR_5g011900 | 29.452 | 146 | 102 | 1 | 112 | 257 | 95 | 239 | 2.05e-11 | 63.5 |
| MS.gene32915.t1 | MTR_1g107535 | 32.484 | 157 | 95 | 6 | 124 | 273 | 111 | 263 | 4.33e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32915.t1 | AT5G43080 | 55.398 | 352 | 143 | 4 | 3 | 351 | 12 | 352 | 1.27e-133 | 385 |
| MS.gene32915.t1 | AT5G43080 | 54.545 | 352 | 141 | 5 | 3 | 351 | 12 | 347 | 1.76e-129 | 374 |
| MS.gene32915.t1 | AT1G47210 | 52.355 | 361 | 158 | 3 | 3 | 351 | 11 | 369 | 8.74e-128 | 371 |
| MS.gene32915.t1 | AT1G47230 | 52.355 | 361 | 151 | 4 | 3 | 351 | 11 | 362 | 3.79e-126 | 367 |
| MS.gene32915.t1 | AT1G47230 | 52.210 | 362 | 151 | 5 | 3 | 351 | 11 | 363 | 3.10e-124 | 362 |
| MS.gene32915.t1 | AT1G47220 | 56.184 | 283 | 124 | 0 | 69 | 351 | 41 | 323 | 7.90e-109 | 321 |
| MS.gene32915.t1 | AT1G44110 | 40.909 | 352 | 196 | 4 | 2 | 349 | 114 | 457 | 2.98e-83 | 260 |
| MS.gene32915.t1 | AT1G80370 | 50.000 | 266 | 130 | 2 | 84 | 349 | 197 | 459 | 3.96e-82 | 257 |
| MS.gene32915.t1 | AT5G11300 | 50.195 | 257 | 126 | 1 | 84 | 340 | 172 | 426 | 1.25e-81 | 255 |
| MS.gene32915.t1 | AT5G25380 | 38.642 | 383 | 195 | 5 | 4 | 349 | 56 | 435 | 5.56e-80 | 251 |
| MS.gene32915.t1 | AT5G25380 | 38.642 | 383 | 195 | 5 | 4 | 349 | 56 | 435 | 5.56e-80 | 251 |
| MS.gene32915.t1 | AT5G25380 | 47.368 | 266 | 137 | 2 | 84 | 349 | 179 | 441 | 4.21e-79 | 249 |
| MS.gene32915.t1 | AT1G15570 | 48.120 | 266 | 135 | 2 | 84 | 349 | 188 | 450 | 2.25e-77 | 244 |
| MS.gene32915.t1 | AT5G25380 | 37.808 | 365 | 188 | 4 | 4 | 331 | 56 | 418 | 5.93e-75 | 238 |
| MS.gene32915.t1 | AT1G77390 | 43.173 | 271 | 152 | 1 | 79 | 349 | 173 | 441 | 2.57e-74 | 236 |
| MS.gene32915.t1 | AT5G11300 | 49.550 | 222 | 101 | 2 | 84 | 296 | 172 | 391 | 4.84e-68 | 219 |
| MS.gene32915.t1 | AT1G47210 | 47.826 | 184 | 82 | 3 | 3 | 174 | 11 | 192 | 4.79e-45 | 153 |
| MS.gene32915.t1 | AT3G11520 | 40.909 | 220 | 122 | 3 | 111 | 329 | 182 | 394 | 4.25e-44 | 157 |
| MS.gene32915.t1 | AT5G06150 | 37.255 | 255 | 146 | 6 | 84 | 336 | 182 | 424 | 8.68e-43 | 154 |
| MS.gene32915.t1 | AT3G11520 | 43.719 | 199 | 104 | 3 | 112 | 309 | 183 | 374 | 1.85e-42 | 152 |
| MS.gene32915.t1 | AT2G26760 | 38.372 | 258 | 149 | 4 | 84 | 340 | 130 | 378 | 1.22e-41 | 150 |
| MS.gene32915.t1 | AT4G37490 | 35.496 | 262 | 153 | 5 | 84 | 339 | 165 | 416 | 5.42e-40 | 146 |
| MS.gene32915.t1 | AT1G20610 | 34.222 | 225 | 142 | 2 | 112 | 336 | 202 | 420 | 5.32e-38 | 141 |
| MS.gene32915.t1 | AT1G16330 | 29.358 | 327 | 203 | 7 | 30 | 345 | 338 | 647 | 8.45e-38 | 143 |
| MS.gene32915.t1 | AT4G35620 | 38.496 | 226 | 133 | 2 | 112 | 337 | 197 | 416 | 4.87e-37 | 138 |
| MS.gene32915.t1 | AT1G76310 | 32.812 | 256 | 162 | 5 | 84 | 338 | 177 | 423 | 2.45e-36 | 136 |
| MS.gene32915.t1 | AT2G17620 | 35.271 | 258 | 158 | 4 | 84 | 341 | 171 | 419 | 1.83e-35 | 134 |
| MS.gene32915.t1 | AT1G76310 | 35.268 | 224 | 131 | 7 | 84 | 306 | 177 | 387 | 3.19e-33 | 127 |
| MS.gene32915.t1 | AT4G35620 | 41.622 | 185 | 99 | 3 | 112 | 296 | 197 | 372 | 3.51e-33 | 127 |
| MS.gene32915.t1 | AT1G76310 | 30.070 | 286 | 158 | 7 | 84 | 338 | 177 | 451 | 2.34e-31 | 123 |
| MS.gene32915.t1 | AT5G06150 | 40.645 | 155 | 88 | 3 | 84 | 238 | 182 | 332 | 9.30e-28 | 111 |
| MS.gene32915.t1 | AT1G76310 | 35.754 | 179 | 106 | 4 | 69 | 246 | 167 | 337 | 4.09e-25 | 104 |
| MS.gene32915.t1 | AT1G20590 | 35.032 | 157 | 96 | 2 | 148 | 304 | 66 | 216 | 1.74e-23 | 98.2 |
| MS.gene32915.t1 | AT1G14750 | 31.928 | 166 | 103 | 4 | 114 | 275 | 213 | 372 | 4.52e-14 | 73.2 |
| MS.gene32915.t1 | AT1G14750 | 31.928 | 166 | 103 | 4 | 114 | 275 | 381 | 540 | 1.26e-13 | 72.4 |
| MS.gene32915.t1 | AT1G14750 | 31.928 | 166 | 103 | 4 | 114 | 275 | 381 | 540 | 1.35e-13 | 72.4 |
| MS.gene32915.t1 | AT1G14750 | 32.530 | 166 | 101 | 5 | 114 | 275 | 213 | 371 | 6.06e-13 | 69.7 |
| MS.gene32915.t1 | AT1G34460 | 30.464 | 151 | 81 | 4 | 84 | 234 | 272 | 398 | 8.98e-11 | 63.5 |
| MS.gene32915.t1 | AT1G34460 | 30.464 | 151 | 81 | 4 | 84 | 234 | 258 | 384 | 9.51e-11 | 63.2 |
Find 65 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAATGATTCGGTATTTC+TGG | 0.133993 | 3.1:+81353466 | None:intergenic |
| AACATTGAGATTTGGTAAAT+TGG | 0.141731 | 3.1:+81355103 | None:intergenic |
| GATGCTGTTCGTTTGTTTAC+TGG | 0.161124 | 3.1:-81355035 | MS.gene32915:CDS |
| TATAAGATTCTTGCCTTCTA+TGG | 0.225037 | 3.1:-81353906 | MS.gene32915:CDS |
| TTCTCAATATAACCAATTAT+TGG | 0.244340 | 3.1:+81354775 | None:intergenic |
| TTCTTCAAAGCTTGGGGTTT+AGG | 0.269795 | 3.1:+81355077 | None:intergenic |
| CTGTGTTTCAGGGAGTTTAT+TGG | 0.304058 | 3.1:-81354116 | MS.gene32915:intron |
| TGTGTTTCAGGGAGTTTATT+GGG | 0.314347 | 3.1:-81354115 | MS.gene32915:intron |
| CTTAAGATTCTTCAAAGCTT+GGG | 0.350575 | 3.1:+81355070 | None:intergenic |
| CTGCATCATTGAAAGCTGTT+AGG | 0.351797 | 3.1:-81353631 | MS.gene32915:CDS |
| TTAGGAGAAACATTGAGATT+TGG | 0.357415 | 3.1:+81355095 | None:intergenic |
| TGCAAATATGAGAGGGATAC+TGG | 0.359853 | 3.1:-81354734 | MS.gene32915:CDS |
| ACATTGAGATTTGGTAAATT+GGG | 0.388776 | 3.1:+81355104 | None:intergenic |
| ACTGGTGGATTGGTTGGTTG+AGG | 0.392164 | 3.1:-81354716 | MS.gene32915:CDS |
| CTCCATTGAGCGAAGATAGT+TGG | 0.398802 | 3.1:+81354926 | None:intergenic |
| CGAACAGCATCAGATTTCTT+CGG | 0.407385 | 3.1:+81355047 | None:intergenic |
| ATTTACCTGTTTCAGCTCAT+AGG | 0.414612 | 3.1:+81354412 | None:intergenic |
| TTCCAACTATCTTCGCTCAA+TGG | 0.418966 | 3.1:-81354928 | MS.gene32915:CDS |
| CATAGGTGTTATCAGTAATC+TGG | 0.421415 | 3.1:+81354429 | None:intergenic |
| ATGATTTGTATTTGGTAAGA+AGG | 0.426700 | 3.1:-81353655 | MS.gene32915:CDS |
| AGGGATACTGGTGGATTGGT+TGG | 0.431112 | 3.1:-81354722 | MS.gene32915:CDS |
| TCAGACCTCAAAATTACAAA+TGG | 0.435653 | 3.1:-81353978 | MS.gene32915:intron |
| GCTTAAGATTCTTCAAAGCT+TGG | 0.438538 | 3.1:+81355069 | None:intergenic |
| ACAGATGCAGCCACCATAGA+AGG | 0.440042 | 3.1:+81353893 | None:intergenic |
| TCTTCTTCAAAGTAATGATT+CGG | 0.449568 | 3.1:+81353457 | None:intergenic |
| TCTGTCCTGGAGTACATCCT+TGG | 0.470472 | 3.1:-81353847 | MS.gene32915:CDS |
| AGATCTAAGCTTCAATTGCT+TGG | 0.471495 | 3.1:-81354607 | MS.gene32915:CDS |
| CTGTCCTGGAGTACATCCTT+GGG | 0.473386 | 3.1:-81353846 | MS.gene32915:intron |
| TAACACCTATGAGCTGAAAC+AGG | 0.475070 | 3.1:-81354417 | MS.gene32915:intron |
| TGGCAGAAATCAACAGCCTT+AGG | 0.476524 | 3.1:+81354449 | None:intergenic |
| TTATAAATCTGCTGAGTTGG+AGG | 0.476698 | 3.1:-81353696 | MS.gene32915:CDS |
| TTCGGTATTTCTGGTGATGA+AGG | 0.481066 | 3.1:+81353475 | None:intergenic |
| AGATGGAGACTCGTGCTTCA+AGG | 0.481168 | 3.1:-81355193 | MS.gene32915:CDS |
| TGATTTGTATTTGGTAAGAA+GGG | 0.489410 | 3.1:-81353654 | MS.gene32915:CDS |
| TGCATCATTGAAAGCTGTTA+GGG | 0.496113 | 3.1:-81353630 | MS.gene32915:CDS |
| GTCTGCTACTGAAGATCTAA+AGG | 0.501507 | 3.1:-81354093 | MS.gene32915:intron |
| TTTGAAACAGTTCAAGAATG+TGG | 0.504612 | 3.1:-81353506 | MS.gene32915:intron |
| TGAGAGGGATACTGGTGGAT+TGG | 0.508165 | 3.1:-81354726 | MS.gene32915:CDS |
| TGTATGAAACAGCAAGATGA+AGG | 0.514862 | 3.1:+81354662 | None:intergenic |
| AAGATTCTTGCCTTCTATGG+TGG | 0.516025 | 3.1:-81353903 | MS.gene32915:CDS |
| TTGGAAATATCAGCTGCATA+AGG | 0.517296 | 3.1:+81354945 | None:intergenic |
| GCTAGATTCATAATCTGTCC+TGG | 0.524506 | 3.1:-81353860 | MS.gene32915:CDS |
| AGACTCGTGCTTCAAGGAAG+AGG | 0.525994 | 3.1:-81355187 | MS.gene32915:CDS |
| ACAGCAAGATGAAGGGTTTG+AGG | 0.530736 | 3.1:+81354670 | None:intergenic |
| GTATTTCTGGTGATGAAGGA+AGG | 0.551734 | 3.1:+81353479 | None:intergenic |
| TGAAGAAATCTCCCCACCTA+AGG | 0.559560 | 3.1:-81354465 | MS.gene32915:CDS |
| TTAAGATTCTTCAAAGCTTG+GGG | 0.559911 | 3.1:+81355071 | None:intergenic |
| ATCTTACGATGCAATGAGCA+TGG | 0.562094 | 3.1:+81354576 | None:intergenic |
| TTTAGAAAAGTGTTAACATG+AGG | 0.564833 | 3.1:+81354225 | None:intergenic |
| TTAGAAAAGTGTTAACATGA+GGG | 0.569090 | 3.1:+81354226 | None:intergenic |
| CAGAAATCAACAGCCTTAGG+TGG | 0.572140 | 3.1:+81354452 | None:intergenic |
| TTTACCCAAGGATGTACTCC+AGG | 0.572732 | 3.1:+81353842 | None:intergenic |
| GTTCGTGTAGGTCATTAAGA+TGG | 0.575091 | 3.1:-81354289 | MS.gene32915:intron |
| AGAAATCAACAGCCTTAGGT+GGG | 0.577007 | 3.1:+81354453 | None:intergenic |
| TGTTGACAGACTCATTAGAC+AGG | 0.583886 | 3.1:+81354629 | None:intergenic |
| ATAGTCTATCAAGCTTAGCT+CGG | 0.584406 | 3.1:+81353934 | None:intergenic |
| GACTCGTGCTTCAAGGAAGA+GGG | 0.598522 | 3.1:-81355186 | MS.gene32915:CDS |
| CAACTATCTTCGCTCAATGG+AGG | 0.603706 | 3.1:-81354925 | MS.gene32915:intron |
| GGTGTTACTGCAAATATGAG+AGG | 0.608167 | 3.1:-81354742 | MS.gene32915:CDS |
| GTGTTACTGCAAATATGAGA+GGG | 0.631608 | 3.1:-81354741 | MS.gene32915:CDS |
| TATATTGAGAAAGTTCAAAG+AGG | 0.632270 | 3.1:-81354763 | MS.gene32915:CDS |
| GTATGAAACAGCAAGATGAA+GGG | 0.636902 | 3.1:+81354663 | None:intergenic |
| GAAATCAACAGCCTTAGGTG+GGG | 0.656360 | 3.1:+81354454 | None:intergenic |
| GGAGAAATACAAGCAACACA+AGG | 0.682277 | 3.1:-81353609 | MS.gene32915:intron |
| AAATATGAGAGGGATACTGG+TGG | 0.717057 | 3.1:-81354731 | MS.gene32915:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTAATTTT+TGG | - | chr3.1:81353812-81353831 | MS.gene32915:intron | 0.0% |
| !!! | TTAATTTTTTTACAATTCAT+GGG | - | chr3.1:81353775-81353794 | MS.gene32915:intron | 10.0% |
| !! | AATTCAAACAAGAAAAAAAT+CGG | + | chr3.1:81354285-81354304 | None:intergenic | 15.0% |
| !! | ATATTAACTATAACAAAGAA+AGG | + | chr3.1:81355073-81355092 | None:intergenic | 15.0% |
| !!! | CAATTTTTTAAAGAAACAAA+TGG | + | chr3.1:81354854-81354873 | None:intergenic | 15.0% |
| !!! | GTTAATTTTTTTACAATTCA+TGG | - | chr3.1:81353774-81353793 | MS.gene32915:intron | 15.0% |
| !! | TAGATTTCATTTAATTCCAT+GGG | - | chr3.1:81354307-81354326 | MS.gene32915:intron | 20.0% |
| !! | TCTTAACAACAAAAAACAAA+GGG | - | chr3.1:81353500-81353519 | MS.gene32915:intron | 20.0% |
| !! | TGTTATAGTTAATATATAGC+TGG | - | chr3.1:81355078-81355097 | MS.gene32915:CDS | 20.0% |
| !! | TTCTCAATATAACCAATTAT+TGG | + | chr3.1:81353872-81353891 | None:intergenic | 20.0% |
| !! | TTCTTAACAACAAAAAACAA+AGG | - | chr3.1:81353499-81353518 | MS.gene32915:CDS | 20.0% |
| !!! | AAATTCCATTTGTAATTTTG+AGG | + | chr3.1:81354674-81354693 | None:intergenic | 20.0% |
| !!! | AAGTCATTGAATTTTGAAAT+GGG | - | chr3.1:81354392-81354411 | MS.gene32915:intron | 20.0% |
| !!! | GATTTTACATGATTTGTATT+TGG | - | chr3.1:81354981-81355000 | MS.gene32915:CDS | 20.0% |
| !!! | TAAGTCATTGAATTTTGAAA+TGG | - | chr3.1:81354391-81354410 | MS.gene32915:intron | 20.0% |
| !!! | TTTTTGTTGTTAAGAACAAT+TGG | + | chr3.1:81353495-81353514 | None:intergenic | 20.0% |
| ! | AAAAAGAGAAGACCAATAAT+TGG | - | chr3.1:81353857-81353876 | MS.gene32915:CDS | 25.0% |
| ! | CTTGTTGAAATCAAGTTAAT+TGG | - | chr3.1:81354481-81354500 | MS.gene32915:intron | 25.0% |
| ! | GTAGATTTCATTTAATTCCA+TGG | - | chr3.1:81354306-81354325 | MS.gene32915:intron | 25.0% |
| ! | TAACATCAAATATTTACCCA+AGG | + | chr3.1:81354817-81354836 | None:intergenic | 25.0% |
| ! | TATATTGAGAAAGTTCAAAG+AGG | - | chr3.1:81353881-81353900 | MS.gene32915:CDS | 25.0% |
| ! | TCTTCTTCAAAGTAATGATT+CGG | + | chr3.1:81355190-81355209 | None:intergenic | 25.0% |
| !! | AACATTGAGATTTGGTAAAT+TGG | + | chr3.1:81353544-81353563 | None:intergenic | 25.0% |
| !! | ACATTGAGATTTGGTAAATT+GGG | + | chr3.1:81353543-81353562 | None:intergenic | 25.0% |
| !! | ATGATTTGTATTTGGTAAGA+AGG | - | chr3.1:81354989-81355008 | MS.gene32915:CDS | 25.0% |
| !! | CAATTAACTTGATTTCAACA+AGG | + | chr3.1:81354483-81354502 | None:intergenic | 25.0% |
| !! | TGATTTGTATTTGGTAAGAA+GGG | - | chr3.1:81354990-81355009 | MS.gene32915:CDS | 25.0% |
| !!! | AAAAAACAAAGGGTTGTTTT+GGG | - | chr3.1:81353510-81353529 | MS.gene32915:intron | 25.0% |
| !!! | GTTAACACTTTTCTAAAGTA+AGG | - | chr3.1:81354425-81354444 | MS.gene32915:CDS | 25.0% |
| !!! | TTAGAAAAGTGTTAACATGA+GGG | + | chr3.1:81354421-81354440 | None:intergenic | 25.0% |
| !!! | TTTAGAAAAGTGTTAACATG+AGG | + | chr3.1:81354422-81354441 | None:intergenic | 25.0% |
| ATGTTAATTGATGTTCGTGT+AGG | - | chr3.1:81354343-81354362 | MS.gene32915:intron | 30.0% | |
| CATTATAAACAAAAGACCCA+TGG | + | chr3.1:81354326-81354345 | None:intergenic | 30.0% | |
| CTTAAGATTCTTCAAAGCTT+GGG | + | chr3.1:81353577-81353596 | None:intergenic | 30.0% | |
| TATAAGATTCTTGCCTTCTA+TGG | - | chr3.1:81354738-81354757 | MS.gene32915:CDS | 30.0% | |
| TCAGACCTCAAAATTACAAA+TGG | - | chr3.1:81354666-81354685 | MS.gene32915:CDS | 30.0% | |
| TTAAGATTCTTCAAAGCTTG+GGG | + | chr3.1:81353576-81353595 | None:intergenic | 30.0% | |
| TTAGGAGAAACATTGAGATT+TGG | + | chr3.1:81353552-81353571 | None:intergenic | 30.0% | |
| ! | CAAAAAACAAAGGGTTGTTT+TGG | - | chr3.1:81353509-81353528 | MS.gene32915:intron | 30.0% |
| ! | GTTTTATAAATCTGCTGAGT+TGG | - | chr3.1:81354945-81354964 | MS.gene32915:CDS | 30.0% |
| ! | TTTGAAACAGTTCAAGAATG+TGG | - | chr3.1:81355138-81355157 | MS.gene32915:CDS | 30.0% |
| !! | AAGTAATGATTCGGTATTTC+TGG | + | chr3.1:81355181-81355200 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTGATTGTTTCTC+AGG | - | chr3.1:81353829-81353848 | MS.gene32915:intron | 30.0% |
| AGATCTAAGCTTCAATTGCT+TGG | - | chr3.1:81354037-81354056 | MS.gene32915:intron | 35.0% | |
| ATAGTCTATCAAGCTTAGCT+CGG | + | chr3.1:81354713-81354732 | None:intergenic | 35.0% | |
| ATGTGCAATAACTGTGTTTC+AGG | - | chr3.1:81354517-81354536 | MS.gene32915:intron | 35.0% | |
| ATTTACCTGTTTCAGCTCAT+AGG | + | chr3.1:81354235-81354254 | None:intergenic | 35.0% | |
| GCTTAAGATTCTTCAAAGCT+TGG | + | chr3.1:81353578-81353597 | None:intergenic | 35.0% | |
| GTATGAAACAGCAAGATGAA+GGG | + | chr3.1:81353984-81354003 | None:intergenic | 35.0% | |
| TGCATCATTGAAAGCTGTTA+GGG | - | chr3.1:81355014-81355033 | MS.gene32915:CDS | 35.0% | |
| TGTATGAAACAGCAAGATGA+AGG | + | chr3.1:81353985-81354004 | None:intergenic | 35.0% | |
| TGTGCAATAACTGTGTTTCA+GGG | - | chr3.1:81354518-81354537 | MS.gene32915:intron | 35.0% | |
| TGTGTTTCAGGGAGTTTATT+GGG | - | chr3.1:81354529-81354548 | MS.gene32915:intron | 35.0% | |
| TTGGAAATATCAGCTGCATA+AGG | + | chr3.1:81353702-81353721 | None:intergenic | 35.0% | |
| ! | CATAGGTGTTATCAGTAATC+TGG | + | chr3.1:81354218-81354237 | None:intergenic | 35.0% |
| ! | GTGTTACTGCAAATATGAGA+GGG | - | chr3.1:81353903-81353922 | MS.gene32915:CDS | 35.0% |
| ! | TTATAAATCTGCTGAGTTGG+AGG | - | chr3.1:81354948-81354967 | MS.gene32915:CDS | 35.0% |
| !!! | GCATTGTTTTTGCTGAAATC+TGG | + | chr3.1:81353651-81353670 | None:intergenic | 35.0% |
| AAATATGAGAGGGATACTGG+TGG | - | chr3.1:81353913-81353932 | MS.gene32915:CDS | 40.0% | |
| AAGATTCTTGCCTTCTATGG+TGG | - | chr3.1:81354741-81354760 | MS.gene32915:CDS | 40.0% | |
| AGAAATCAACAGCCTTAGGT+GGG | + | chr3.1:81354194-81354213 | None:intergenic | 40.0% | |
| ATCTTACGATGCAATGAGCA+TGG | + | chr3.1:81354071-81354090 | None:intergenic | 40.0% | |
| CGAACAGCATCAGATTTCTT+CGG | + | chr3.1:81353600-81353619 | None:intergenic | 40.0% | |
| CTGCATCATTGAAAGCTGTT+AGG | - | chr3.1:81355013-81355032 | MS.gene32915:CDS | 40.0% | |
| CTGTGTTTCAGGGAGTTTAT+TGG | - | chr3.1:81354528-81354547 | MS.gene32915:intron | 40.0% | |
| GATGCTGTTCGTTTGTTTAC+TGG | - | chr3.1:81353609-81353628 | MS.gene32915:intron | 40.0% | |
| GCTAGATTCATAATCTGTCC+TGG | - | chr3.1:81354784-81354803 | MS.gene32915:CDS | 40.0% | |
| GGAGAAATACAAGCAACACA+AGG | - | chr3.1:81355035-81355054 | MS.gene32915:CDS | 40.0% | |
| GTCTGCTACTGAAGATCTAA+AGG | - | chr3.1:81354551-81354570 | MS.gene32915:intron | 40.0% | |
| GTTCGTGTAGGTCATTAAGA+TGG | - | chr3.1:81354355-81354374 | MS.gene32915:intron | 40.0% | |
| TAACACCTATGAGCTGAAAC+AGG | - | chr3.1:81354227-81354246 | MS.gene32915:CDS | 40.0% | |
| TGCAAATATGAGAGGGATAC+TGG | - | chr3.1:81353910-81353929 | MS.gene32915:CDS | 40.0% | |
| TGTTGACAGACTCATTAGAC+AGG | + | chr3.1:81354018-81354037 | None:intergenic | 40.0% | |
| TTCCAACTATCTTCGCTCAA+TGG | - | chr3.1:81353716-81353735 | MS.gene32915:CDS | 40.0% | |
| TTCTTCAAAGCTTGGGGTTT+AGG | + | chr3.1:81353570-81353589 | None:intergenic | 40.0% | |
| !! | GGTGTTACTGCAAATATGAG+AGG | - | chr3.1:81353902-81353921 | MS.gene32915:CDS | 40.0% |
| !! | GTATTTCTGGTGATGAAGGA+AGG | + | chr3.1:81355168-81355187 | None:intergenic | 40.0% |
| !! | TTCGGTATTTCTGGTGATGA+AGG | + | chr3.1:81355172-81355191 | None:intergenic | 40.0% |
| ACAGCAAGATGAAGGGTTTG+AGG | + | chr3.1:81353977-81353996 | None:intergenic | 45.0% | |
| CAACTATCTTCGCTCAATGG+AGG | - | chr3.1:81353719-81353738 | MS.gene32915:CDS | 45.0% | |
| CAGAAATCAACAGCCTTAGG+TGG | + | chr3.1:81354195-81354214 | None:intergenic | 45.0% | |
| CTCCATTGAGCGAAGATAGT+TGG | + | chr3.1:81353721-81353740 | None:intergenic | 45.0% | |
| GAAATCAACAGCCTTAGGTG+GGG | + | chr3.1:81354193-81354212 | None:intergenic | 45.0% | |
| TGAAGAAATCTCCCCACCTA+AGG | - | chr3.1:81354179-81354198 | MS.gene32915:intron | 45.0% | |
| TGGCAGAAATCAACAGCCTT+AGG | + | chr3.1:81354198-81354217 | None:intergenic | 45.0% | |
| TTTACCCAAGGATGTACTCC+AGG | + | chr3.1:81354805-81354824 | None:intergenic | 45.0% | |
| ACAGATGCAGCCACCATAGA+AGG | + | chr3.1:81354754-81354773 | None:intergenic | 50.0% | |
| AGACTCGTGCTTCAAGGAAG+AGG | - | chr3.1:81353457-81353476 | MS.gene32915:CDS | 50.0% | |
| CTGTCCTGGAGTACATCCTT+GGG | - | chr3.1:81354798-81354817 | MS.gene32915:intron | 50.0% | |
| GACTCGTGCTTCAAGGAAGA+GGG | - | chr3.1:81353458-81353477 | MS.gene32915:CDS | 50.0% | |
| TCTGTCCTGGAGTACATCCT+TGG | - | chr3.1:81354797-81354816 | MS.gene32915:intron | 50.0% | |
| ! | TGAGAGGGATACTGGTGGAT+TGG | - | chr3.1:81353918-81353937 | MS.gene32915:CDS | 50.0% |
| !! | ACTGGTGGATTGGTTGGTTG+AGG | - | chr3.1:81353928-81353947 | MS.gene32915:CDS | 50.0% |
| !! | AGGGATACTGGTGGATTGGT+TGG | - | chr3.1:81353922-81353941 | MS.gene32915:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81353453 | 81355213 | 81353453 | ID=MS.gene32915 |
| chr3.1 | mRNA | 81353453 | 81355213 | 81353453 | ID=MS.gene32915.t1;Parent=MS.gene32915 |
| chr3.1 | exon | 81354926 | 81355213 | 81354926 | ID=MS.gene32915.t1.exon1;Parent=MS.gene32915.t1 |
| chr3.1 | CDS | 81354926 | 81355213 | 81354926 | ID=cds.MS.gene32915.t1;Parent=MS.gene32915.t1 |
| chr3.1 | exon | 81354583 | 81354815 | 81354583 | ID=MS.gene32915.t1.exon2;Parent=MS.gene32915.t1 |
| chr3.1 | CDS | 81354583 | 81354815 | 81354583 | ID=cds.MS.gene32915.t1;Parent=MS.gene32915.t1 |
| chr3.1 | exon | 81354418 | 81354493 | 81354418 | ID=MS.gene32915.t1.exon3;Parent=MS.gene32915.t1 |
| chr3.1 | CDS | 81354418 | 81354493 | 81354418 | ID=cds.MS.gene32915.t1;Parent=MS.gene32915.t1 |
| chr3.1 | exon | 81354225 | 81354301 | 81354225 | ID=MS.gene32915.t1.exon4;Parent=MS.gene32915.t1 |
| chr3.1 | CDS | 81354225 | 81354301 | 81354225 | ID=cds.MS.gene32915.t1;Parent=MS.gene32915.t1 |
| chr3.1 | exon | 81354094 | 81354127 | 81354094 | ID=MS.gene32915.t1.exon5;Parent=MS.gene32915.t1 |
| chr3.1 | CDS | 81354094 | 81354127 | 81354094 | ID=cds.MS.gene32915.t1;Parent=MS.gene32915.t1 |
| chr3.1 | exon | 81353847 | 81353996 | 81353847 | ID=MS.gene32915.t1.exon6;Parent=MS.gene32915.t1 |
| chr3.1 | CDS | 81353847 | 81353996 | 81353847 | ID=cds.MS.gene32915.t1;Parent=MS.gene32915.t1 |
| chr3.1 | exon | 81353610 | 81353744 | 81353610 | ID=MS.gene32915.t1.exon7;Parent=MS.gene32915.t1 |
| chr3.1 | CDS | 81353610 | 81353744 | 81353610 | ID=cds.MS.gene32915.t1;Parent=MS.gene32915.t1 |
| chr3.1 | exon | 81353453 | 81353518 | 81353453 | ID=MS.gene32915.t1.exon8;Parent=MS.gene32915.t1 |
| chr3.1 | CDS | 81353453 | 81353518 | 81353453 | ID=cds.MS.gene32915.t1;Parent=MS.gene32915.t1 |
| Gene Sequence |
| Protein sequence |
