AlfalfaGEDB | MS.gene04972

M. sativa cultivar XinJiangDaYe / MS.gene04972

KEGG: K11254
GO: GO:0000786 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0005575 GO:0005634 GO:0032991 GO:0032993 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044815 GO:0046982 GO:0046983 GO:0097159 GO:0110165 GO:1901363
PFAM: PF15511.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04972.t1	KCW52694.1	100	103	0	0	1	103	4	106	7.50E-48	199.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04972.t1	P62785	100.0	103	0	0	1	103	1	103	1.8e-50	199.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04972.t1	M5VRN0	100.0	103	0	0	1	103	1	103	5.4e-48	199.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049596	MS.gene04972	0.8237	1.20E-53	-1.69E-46
MS.gene049705	MS.gene04972	0.808088	3.68E-50	-1.69E-46
MS.gene04972	MS.gene050297	0.826173	3.14E-54	-1.69E-46
MS.gene04972	MS.gene05124	0.812433	4.25E-51	-1.69E-46
MS.gene04972	MS.gene051263	0.817731	2.83E-52	-1.69E-46
MS.gene04972	MS.gene054643	0.827677	1.37E-54	-1.69E-46
MS.gene04972	MS.gene055957	0.81259	3.93E-51	-1.69E-46
MS.gene04972	MS.gene058818	0.838112	3.49E-57	-1.69E-46
MS.gene04972	MS.gene058844	0.825772	3.91E-54	-1.69E-46
MS.gene04972	MS.gene062890	0.81583	7.56E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene004121	MS.gene04972	PPI
MS.gene004124	MS.gene04972	PPI
MS.gene008276	MS.gene04972	PPI
MS.gene009027	MS.gene04972	PPI
MS.gene010219	MS.gene04972	PPI
MS.gene010220	MS.gene04972	PPI
MS.gene012390	MS.gene04972	PPI
MS.gene012391	MS.gene04972	PPI
MS.gene016624	MS.gene04972	PPI
MS.gene018578	MS.gene04972	PPI

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04972.t1	MTR_7g029510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04972.t1	MTR_7g099610	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04972.t1	MTR_5g063620	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04972.t1	MTR_4g061827	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04972.t1	MTR_4g061920	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04972.t1	MTR_3g462400	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04972.t1	MTR_3g054380	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04972.t1	MTR_3g462730	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04972.t1	MTR_3g462510	100.000	103	1	103	1	103	2.85e-68	199
MS.gene04972.t1	MTR_3g070920	100.000	103	1	103	1	103	2.85e-68	199

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene04972.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04972.t1	AT5G59690	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04972.t1	AT5G59970	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04972.t1	AT3G46320	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04972.t1	AT3G45930	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04972.t1	AT3G53730	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04972.t1	AT2G28740	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04972.t1	AT1G07660	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04972.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199
MS.gene04972.t1	AT1G07820	100.000	103	1	103	1	103	2.99e-68	199

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Find 36 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTCAGGTCGTGGAAA+GGG	0.548959	3.3:-58986000	MS.gene04972:CDS
AGAACCCTCTATGGATTTGG+AGG	0.508817	3.3:-58985712	MS.gene04972:CDS
AGACAAGGAAGAACCCTCTA+TGG	0.396310	3.3:-58985721	MS.gene04972:CDS
AGGGAGGTGCAAAGAGGCAT+AGG	0.547891	3.3:-58985960	MS.gene04972:CDS
AGGTCGTGGAAAGGGAGGTA+AGG	0.492819	3.3:-58985992	MS.gene04972:CDS
AGGTGTCTTGAAGATCTTCT+TGG	0.405705	3.3:-58985830	MS.gene04972:CDS
AGTTCTCCGCGATAACATCC+AGG	0.504812	3.3:-58985935	MS.gene04972:CDS
ATGTCAGGTCGTGGAAAGGG+AGG	0.643397	3.3:-58985997	MS.gene04972:CDS
ATTCGTCGATTGGCGAGAAG+AGG	0.604517	3.3:-58985895	MS.gene04972:CDS
CAAAGCATAGACAACATCCA+TGG	0.629842	3.3:+58985747	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGATCTATGAAGAAACCAG+AGG	-	chr3.3:58985855-58985874	MS.gene04972:CDS	35.0%
AGGTGTCTTGAAGATCTTCT+TGG	-	chr3.3:58985875-58985894	MS.gene04972:CDS	40.0%
CAAAGCATAGACAACATCCA+TGG	+	chr3.3:58985961-58985980	None:intergenic	40.0%
TCAACCTCCAAATCCATAGA+GGG	+	chr3.3:58986000-58986019	None:intergenic	40.0%
TTACATACACTGAGCATGCT+AGG	-	chr3.3:58985919-58985938	MS.gene04972:CDS	40.0%
AGAACCCTCTATGGATTTGG+AGG	-	chr3.3:58985993-58986012	MS.gene04972:CDS	45.0%
AGACAAGGAAGAACCCTCTA+TGG	-	chr3.3:58985984-58986003	MS.gene04972:CDS	45.0%
GAAGATCTTCAAGACACCTC+TGG	+	chr3.3:58985874-58985893	None:intergenic	45.0%
GGAAGAACCCTCTATGGATT+TGG	-	chr3.3:58985990-58986009	MS.gene04972:CDS	45.0%
TGATACCCTGGATGTTATCG+CGG	+	chr3.3:58985779-58985798	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	58985708	58986019	58985708	ID=MS.gene04972
chr3.3	mRNA	58985708	58986019	58985708	ID=MS.gene04972.t1;Parent=MS.gene04972
chr3.3	exon	58985708	58986019	58985708	ID=MS.gene04972.t1.exon1;Parent=MS.gene04972.t1
chr3.3	CDS	58985708	58986019	58985708	ID=cds.MS.gene04972.t1;Parent=MS.gene04972.t1

Gene Sequence	>MS.gene04972 ATGTCAGGTCGTGGAAAGGGAGGTAAGGGACTTGGAAAGGGAGGTGCAAAGAGGCATAGGAAAGTTCTCCGCGATAACATCCAGGGTATCACCAAGCCTGCAATTCGTCGATTGGCGAGAAGAGGCGGTGTTAAGAGAATCAGTGGATTGATCTATGAAGAAACCAGAGGTGTCTTGAAGATCTTCTTGGAAAACGTCATTCGTGATGCAGTTACATACACTGAGCATGCTAGGAGGAAGACGGTGACAGCCATGGATGTTGTCTATGCTTTGAAGAGACAAGGAAGAACCCTCTATGGATTTGGAGGTTGA
Protein sequence	>MS.gene04972.t1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG