Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33677.t1 | XP_013454794.1 | 87.4 | 199 | 23 | 1 | 1 | 197 | 1 | 199 | 5.20E-90 | 340.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33677.t1 | Q9C523 | 66.0 | 159 | 54 | 0 | 39 | 197 | 27 | 185 | 2.4e-59 | 229.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33677.t1 | I3S4L6 | 87.4 | 199 | 23 | 1 | 1 | 197 | 1 | 199 | 3.7e-90 | 340.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene33677 | MS.gene33681 | PPI |
MS.gene048891 | MS.gene33677 | PPI |
MS.gene55764 | MS.gene33677 | PPI |
MS.gene33677 | MS.gene034592 | PPI |
MS.gene33424 | MS.gene33677 | PPI |
MS.gene06035 | MS.gene33677 | PPI |
MS.gene55766 | MS.gene33677 | PPI |
MS.gene33677 | MS.gene46462 | PPI |
MS.gene33677 | MS.gene33680 | PPI |
MS.gene068294 | MS.gene33677 | PPI |
MS.gene33679 | MS.gene33677 | PPI |
MS.gene33677 | MS.gene068291 | PPI |
MS.gene33677 | MS.gene33426 | PPI |
MS.gene24973 | MS.gene33677 | PPI |
MS.gene068578 | MS.gene33677 | PPI |
MS.gene33677 | MS.gene06033 | PPI |
MS.gene39163 | MS.gene33677 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33677.t1 | MTR_4g013325 | 92.965 | 199 | 12 | 1 | 1 | 197 | 1 | 199 | 9.87e-119 | 335 |
MS.gene33677.t1 | MTR_4g013335 | 83.060 | 183 | 27 | 3 | 16 | 197 | 17 | 196 | 7.69e-111 | 315 |
MS.gene33677.t1 | MTR_4g013350 | 77.273 | 198 | 43 | 2 | 1 | 197 | 1 | 197 | 2.54e-107 | 306 |
MS.gene33677.t1 | MTR_4g013320 | 77.387 | 199 | 43 | 2 | 1 | 197 | 1 | 199 | 6.83e-107 | 305 |
MS.gene33677.t1 | MTR_4g013345 | 76.263 | 198 | 44 | 2 | 1 | 197 | 1 | 196 | 4.14e-104 | 298 |
MS.gene33677.t1 | MTR_4g013330 | 73.500 | 200 | 49 | 3 | 1 | 197 | 1 | 199 | 1.02e-102 | 294 |
MS.gene33677.t1 | MTR_4g013310 | 69.849 | 199 | 56 | 3 | 1 | 197 | 1 | 197 | 6.70e-93 | 270 |
MS.gene33677.t1 | MTR_7g070390 | 68.254 | 189 | 57 | 2 | 11 | 197 | 5 | 192 | 3.12e-83 | 245 |
MS.gene33677.t1 | MTR_4g013385 | 57.672 | 189 | 74 | 3 | 9 | 197 | 8 | 190 | 3.25e-76 | 227 |
MS.gene33677.t1 | MTR_0433s0040 | 57.672 | 189 | 74 | 3 | 9 | 197 | 8 | 190 | 3.25e-76 | 227 |
MS.gene33677.t1 | MTR_4g013770 | 61.538 | 169 | 63 | 2 | 30 | 197 | 24 | 191 | 6.49e-69 | 208 |
MS.gene33677.t1 | MTR_1g054525 | 60.000 | 165 | 63 | 2 | 34 | 197 | 30 | 192 | 6.17e-67 | 203 |
MS.gene33677.t1 | MTR_4g013355 | 52.381 | 189 | 75 | 3 | 9 | 197 | 6 | 179 | 1.65e-62 | 192 |
MS.gene33677.t1 | MTR_7g093870 | 53.049 | 164 | 72 | 2 | 39 | 197 | 30 | 193 | 5.03e-59 | 184 |
MS.gene33677.t1 | MTR_7g093820 | 49.462 | 186 | 91 | 3 | 13 | 197 | 11 | 194 | 9.30e-58 | 180 |
MS.gene33677.t1 | MTR_7g093850 | 46.073 | 191 | 90 | 3 | 13 | 197 | 11 | 194 | 1.53e-57 | 180 |
MS.gene33677.t1 | MTR_4g073950 | 52.597 | 154 | 72 | 1 | 45 | 197 | 39 | 192 | 3.64e-57 | 179 |
MS.gene33677.t1 | MTR_7g093790 | 48.171 | 164 | 84 | 1 | 35 | 197 | 28 | 191 | 6.50e-57 | 178 |
MS.gene33677.t1 | MTR_7g093830 | 49.390 | 164 | 82 | 1 | 35 | 197 | 30 | 193 | 1.47e-56 | 177 |
MS.gene33677.t1 | MTR_1g056370 | 46.497 | 157 | 79 | 3 | 44 | 196 | 30 | 185 | 9.64e-48 | 154 |
MS.gene33677.t1 | MTR_3g105640 | 47.368 | 152 | 78 | 2 | 48 | 197 | 37 | 188 | 1.62e-45 | 149 |
MS.gene33677.t1 | MTR_4g078885 | 44.737 | 152 | 82 | 1 | 46 | 197 | 36 | 185 | 8.76e-45 | 147 |
MS.gene33677.t1 | MTR_3g034030 | 45.395 | 152 | 81 | 1 | 46 | 197 | 36 | 185 | 1.66e-44 | 146 |
MS.gene33677.t1 | MTR_5g096120 | 43.137 | 204 | 90 | 6 | 4 | 197 | 2 | 189 | 2.07e-43 | 144 |
MS.gene33677.t1 | MTR_3g105630 | 40.933 | 193 | 103 | 4 | 8 | 197 | 5 | 189 | 6.59e-43 | 142 |
MS.gene33677.t1 | MTR_4g122110 | 38.028 | 142 | 88 | 0 | 56 | 197 | 39 | 180 | 9.85e-28 | 103 |
MS.gene33677.t1 | MTR_4g122130 | 37.931 | 145 | 84 | 2 | 56 | 197 | 39 | 180 | 1.21e-25 | 97.8 |
MS.gene33677.t1 | MTR_4g013340 | 51.042 | 96 | 12 | 1 | 102 | 197 | 78 | 138 | 5.72e-25 | 95.1 |
MS.gene33677.t1 | MTR_4g049550 | 29.655 | 145 | 102 | 0 | 48 | 192 | 29 | 173 | 3.16e-19 | 81.3 |
MS.gene33677.t1 | MTR_4g049570 | 29.371 | 143 | 101 | 0 | 50 | 192 | 31 | 173 | 7.35e-19 | 80.1 |
MS.gene33677.t1 | MTR_8g099115 | 31.788 | 151 | 94 | 3 | 38 | 180 | 23 | 172 | 5.98e-16 | 72.8 |
MS.gene33677.t1 | MTR_8g099135 | 33.083 | 133 | 78 | 4 | 57 | 180 | 38 | 168 | 1.17e-13 | 66.6 |
MS.gene33677.t1 | MTR_1g046490 | 37.778 | 90 | 55 | 1 | 84 | 173 | 121 | 209 | 1.33e-13 | 67.4 |
MS.gene33677.t1 | MTR_1g046800 | 41.111 | 90 | 52 | 1 | 84 | 173 | 135 | 223 | 1.43e-13 | 67.4 |
MS.gene33677.t1 | MTR_1g046500 | 41.111 | 90 | 52 | 1 | 84 | 173 | 135 | 223 | 2.21e-13 | 67.0 |
MS.gene33677.t1 | MTR_1g115510 | 35.537 | 121 | 67 | 4 | 85 | 196 | 235 | 353 | 9.11e-12 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33677.t1 | AT1G58170 | 59.677 | 186 | 68 | 1 | 12 | 197 | 7 | 185 | 3.43e-80 | 237 |
MS.gene33677.t1 | AT5G49040 | 55.851 | 188 | 82 | 1 | 11 | 197 | 4 | 191 | 4.01e-76 | 227 |
MS.gene33677.t1 | AT1G55210 | 55.789 | 190 | 77 | 3 | 9 | 197 | 4 | 187 | 1.46e-74 | 223 |
MS.gene33677.t1 | AT1G55210 | 55.789 | 190 | 77 | 3 | 9 | 197 | 4 | 187 | 1.46e-74 | 223 |
MS.gene33677.t1 | AT3G13650 | 53.763 | 186 | 83 | 1 | 12 | 197 | 4 | 186 | 1.06e-69 | 210 |
MS.gene33677.t1 | AT5G49030 | 55.172 | 174 | 77 | 1 | 11 | 183 | 4 | 177 | 2.31e-59 | 200 |
MS.gene33677.t1 | AT1G65870 | 56.000 | 150 | 66 | 0 | 47 | 196 | 40 | 189 | 4.33e-58 | 181 |
MS.gene33677.t1 | AT3G13662 | 49.714 | 175 | 81 | 3 | 11 | 184 | 4 | 172 | 1.76e-55 | 174 |
MS.gene33677.t1 | AT2G21100 | 50.323 | 155 | 77 | 0 | 42 | 196 | 33 | 187 | 5.47e-55 | 173 |
MS.gene33677.t1 | AT2G21100 | 50.323 | 155 | 77 | 0 | 42 | 196 | 33 | 187 | 5.47e-55 | 173 |
MS.gene33677.t1 | AT3G13660 | 66.102 | 118 | 40 | 0 | 80 | 197 | 8 | 125 | 4.55e-54 | 169 |
MS.gene33677.t1 | AT5G42500 | 48.667 | 150 | 75 | 1 | 47 | 196 | 38 | 185 | 4.32e-49 | 158 |
MS.gene33677.t1 | AT1G22900 | 50.000 | 150 | 73 | 1 | 47 | 196 | 46 | 193 | 1.00e-48 | 157 |
MS.gene33677.t1 | AT5G42510 | 48.667 | 150 | 75 | 1 | 47 | 196 | 35 | 182 | 2.95e-48 | 155 |
MS.gene33677.t1 | AT4G38700 | 43.827 | 162 | 85 | 3 | 42 | 197 | 29 | 190 | 1.82e-44 | 146 |
MS.gene33677.t1 | AT3G58090 | 54.128 | 109 | 50 | 0 | 88 | 196 | 163 | 271 | 6.73e-40 | 137 |
MS.gene33677.t1 | AT2G21110 | 38.462 | 169 | 95 | 2 | 33 | 197 | 23 | 186 | 2.12e-39 | 133 |
MS.gene33677.t1 | AT4G23690 | 35.664 | 143 | 84 | 4 | 41 | 179 | 31 | 169 | 3.17e-17 | 76.3 |
MS.gene33677.t1 | AT1G64160 | 31.944 | 144 | 91 | 3 | 41 | 180 | 25 | 165 | 3.21e-16 | 73.6 |
MS.gene33677.t1 | AT4G11190 | 33.824 | 136 | 82 | 5 | 41 | 172 | 27 | 158 | 1.55e-15 | 71.6 |
MS.gene33677.t1 | AT4G11210 | 29.834 | 181 | 101 | 7 | 7 | 180 | 5 | 166 | 6.70e-15 | 70.1 |
MS.gene33677.t1 | AT4G13580 | 34.951 | 103 | 60 | 2 | 84 | 180 | 129 | 230 | 3.01e-11 | 60.8 |
MS.gene33677.t1 | AT3G24020 | 37.778 | 90 | 55 | 1 | 84 | 173 | 128 | 216 | 3.04e-11 | 60.8 |
MS.gene33677.t1 | AT4G11180 | 32.331 | 133 | 84 | 4 | 48 | 176 | 34 | 164 | 4.61e-11 | 59.7 |
Find 36 sgRNAs with CRISPR-Local
Find 42 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGAAGTACACTTACTATTT+TGG | 0.090168 | 4.3:+84200707 | MS.gene33677:CDS |
AGTTCTGGTCCTAATGTTAA+AGG | 0.200219 | 4.3:-84200576 | None:intergenic |
CTAAACACGACAACTGCTTT+TGG | 0.250268 | 4.3:+84200531 | MS.gene33677:CDS |
ATTGATAACCCTTTAACATT+AGG | 0.316470 | 4.3:+84200567 | MS.gene33677:CDS |
TTTAATAATTTGCGGTCTAT+AGG | 0.343916 | 4.3:-84200408 | None:intergenic |
AGATGAAGTTGATTTGCTTA+TGG | 0.369472 | 4.3:+84200650 | MS.gene33677:CDS |
CATTGGTTTGATATCAAAAC+CGG | 0.379656 | 4.3:+84200825 | MS.gene33677:CDS |
TTTACTGAAGGAAAATATAA+TGG | 0.380359 | 4.3:+84200687 | MS.gene33677:CDS |
AGGACCAGAACTGAGTTCTA+AGG | 0.395502 | 4.3:+84200587 | MS.gene33677:CDS |
AAGTGATGGTGTTGCAAGAT+AGG | 0.403929 | 4.3:-84200338 | None:intergenic |
TCTTTAGGTTTAATAATTTG+CGG | 0.414614 | 4.3:-84200416 | None:intergenic |
GTTCTGGTCCTAATGTTAAA+GGG | 0.423463 | 4.3:-84200575 | None:intergenic |
ATGCTGAAGCTAATACTCAT+TGG | 0.445682 | 4.3:+84200808 | MS.gene33677:CDS |
GAACTGAGTTCTAAGGTTGT+TGG | 0.452309 | 4.3:+84200594 | MS.gene33677:CDS |
GTTGTCGTGTTTAGTTTCAA+TGG | 0.464443 | 4.3:-84200522 | None:intergenic |
GGAACAACTGCAACTGAAGT+AGG | 0.473877 | 4.3:-84200495 | None:intergenic |
ACAACCTTAGAACTCAGTTC+TGG | 0.474628 | 4.3:-84200591 | None:intergenic |
AGAACAAAGTGATGAAGTGT+TGG | 0.478622 | 4.3:-84200305 | None:intergenic |
GAACAAAGTGATGAAGTGTT+GGG | 0.498072 | 4.3:-84200304 | None:intergenic |
GTGTTTAGTTTCAATGGTGG+TGG | 0.501953 | 4.3:-84200516 | None:intergenic |
TAAGTCATTTCAGATTCTAC+TGG | 0.503837 | 4.3:+84200448 | MS.gene33677:CDS |
AAGGTTGTTGGAAAAGCTCA+AGG | 0.511935 | 4.3:+84200606 | MS.gene33677:CDS |
ATGCCTGTGATTGGTGGAAG+TGG | 0.514663 | 4.3:+84200762 | MS.gene33677:CDS |
CAAATTATTAAACCTAAAGA+AGG | 0.527897 | 4.3:+84200419 | MS.gene33677:CDS |
TGGTGTTGCAAGATAGGAGA+AGG | 0.539243 | 4.3:-84200332 | None:intergenic |
ATACTCAACAATAGCATCCC+CGG | 0.565003 | 4.3:-84200844 | None:intergenic |
GTTAGAGAGATGCCTGTGAT+TGG | 0.567283 | 4.3:+84200753 | MS.gene33677:CDS |
ACTCCACTTCCACCAATCAC+AGG | 0.589329 | 4.3:-84200765 | None:intergenic |
GAACAACTGCAACTGAAGTA+GGG | 0.596771 | 4.3:-84200494 | None:intergenic |
AGAGAGATGCCTGTGATTGG+TGG | 0.606895 | 4.3:+84200756 | MS.gene33677:CDS |
TGATGATGATGTTAAAGTGA+TGG | 0.638584 | 4.3:-84200352 | None:intergenic |
TACTGGCACGACATAGTGAG+TGG | 0.639000 | 4.3:+84200465 | MS.gene33677:CDS |
AGGTTGTTGGAAAAGCTCAA+GGG | 0.639795 | 4.3:+84200607 | MS.gene33677:CDS |
ATTGGTTTGATATCAAAACC+GGG | 0.644981 | 4.3:+84200826 | MS.gene33677:CDS |
GTCGTGTTTAGTTTCAATGG+TGG | 0.656285 | 4.3:-84200519 | None:intergenic |
TTGGTTTGATATCAAAACCG+GGG | 0.681345 | 4.3:+84200827 | MS.gene33677:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CAAATTATTAAACCTAAAGA+AGG | + | chr4.3:84200419-84200438 | MS.gene33677:CDS | 20.0% |
!! | TTTACTGAAGGAAAATATAA+TGG | + | chr4.3:84200687-84200706 | MS.gene33677:CDS | 20.0% |
!!! | ATTATATTTTCCTTCAGTAA+AGG | - | chr4.3:84200688-84200707 | None:intergenic | 20.0% |
!!! | TCTTTAGGTTTAATAATTTG+CGG | - | chr4.3:84200419-84200438 | None:intergenic | 20.0% |
!! | ATTGATAACCCTTTAACATT+AGG | + | chr4.3:84200567-84200586 | MS.gene33677:CDS | 25.0% |
!! | TTTAATAATTTGCGGTCTAT+AGG | - | chr4.3:84200411-84200430 | None:intergenic | 25.0% |
TAAGTCATTTCAGATTCTAC+TGG | + | chr4.3:84200448-84200467 | MS.gene33677:CDS | 30.0% | |
! | ATGAATTTTGCCTTTACTGA+AGG | + | chr4.3:84200675-84200694 | MS.gene33677:CDS | 30.0% |
! | TGATGATGATGTTAAAGTGA+TGG | - | chr4.3:84200355-84200374 | None:intergenic | 30.0% |
!! | AGATGAAGTTGATTTGCTTA+TGG | + | chr4.3:84200650-84200669 | MS.gene33677:CDS | 30.0% |
!! | ATTGGTTTGATATCAAAACC+GGG | + | chr4.3:84200826-84200845 | MS.gene33677:CDS | 30.0% |
!! | CATTGGTTTGATATCAAAAC+CGG | + | chr4.3:84200825-84200844 | MS.gene33677:CDS | 30.0% |
!! | GACTTAGTTTTTCCTTCTTT+AGG | - | chr4.3:84200434-84200453 | None:intergenic | 30.0% |
!! | GGAAGTACACTTACTATTTT+GGG | + | chr4.3:84200708-84200727 | MS.gene33677:CDS | 30.0% |
!! | TGGAAGTACACTTACTATTT+TGG | + | chr4.3:84200707-84200726 | MS.gene33677:CDS | 30.0% |
AGAACAAAGTGATGAAGTGT+TGG | - | chr4.3:84200308-84200327 | None:intergenic | 35.0% | |
ATGCTGAAGCTAATACTCAT+TGG | + | chr4.3:84200808-84200827 | MS.gene33677:CDS | 35.0% | |
GTTCTGGTCCTAATGTTAAA+GGG | - | chr4.3:84200578-84200597 | None:intergenic | 35.0% | |
! | AGTTCTGGTCCTAATGTTAA+AGG | - | chr4.3:84200579-84200598 | None:intergenic | 35.0% |
! | GAACAAAGTGATGAAGTGTT+GGG | - | chr4.3:84200307-84200326 | None:intergenic | 35.0% |
! | GTTGTCGTGTTTAGTTTCAA+TGG | - | chr4.3:84200525-84200544 | None:intergenic | 35.0% |
! | TTGGTTTGATATCAAAACCG+GGG | + | chr4.3:84200827-84200846 | MS.gene33677:CDS | 35.0% |
!! | GTACACTTACTATTTTGGGA+AGG | + | chr4.3:84200712-84200731 | MS.gene33677:CDS | 35.0% |
AAGGTTGTTGGAAAAGCTCA+AGG | + | chr4.3:84200606-84200625 | MS.gene33677:CDS | 40.0% | |
ACAACCTTAGAACTCAGTTC+TGG | - | chr4.3:84200594-84200613 | None:intergenic | 40.0% | |
AGGTTGTTGGAAAAGCTCAA+GGG | + | chr4.3:84200607-84200626 | MS.gene33677:CDS | 40.0% | |
ATACTCAACAATAGCATCCC+CGG | - | chr4.3:84200847-84200866 | None:intergenic | 40.0% | |
GAACAACTGCAACTGAAGTA+GGG | - | chr4.3:84200497-84200516 | None:intergenic | 40.0% | |
! | CTAAACACGACAACTGCTTT+TGG | + | chr4.3:84200531-84200550 | MS.gene33677:CDS | 40.0% |
! | GTCGTGTTTAGTTTCAATGG+TGG | - | chr4.3:84200522-84200541 | None:intergenic | 40.0% |
! | GTGTTTAGTTTCAATGGTGG+TGG | - | chr4.3:84200519-84200538 | None:intergenic | 40.0% |
!! | AAGTGATGGTGTTGCAAGAT+AGG | - | chr4.3:84200341-84200360 | None:intergenic | 40.0% |
!! | GAACTGAGTTCTAAGGTTGT+TGG | + | chr4.3:84200594-84200613 | MS.gene33677:CDS | 40.0% |
!!! | GGAGTTTTCAGATTTGCTAG+AGG | + | chr4.3:84200783-84200802 | MS.gene33677:CDS | 40.0% |
AGGACCAGAACTGAGTTCTA+AGG | + | chr4.3:84200587-84200606 | MS.gene33677:CDS | 45.0% | |
GGAACAACTGCAACTGAAGT+AGG | - | chr4.3:84200498-84200517 | None:intergenic | 45.0% | |
GTTAGAGAGATGCCTGTGAT+TGG | + | chr4.3:84200753-84200772 | MS.gene33677:CDS | 45.0% | |
!! | TGGTGTTGCAAGATAGGAGA+AGG | - | chr4.3:84200335-84200354 | None:intergenic | 45.0% |
ACTCCACTTCCACCAATCAC+AGG | - | chr4.3:84200768-84200787 | None:intergenic | 50.0% | |
AGAGAGATGCCTGTGATTGG+TGG | + | chr4.3:84200756-84200775 | MS.gene33677:CDS | 50.0% | |
ATGCCTGTGATTGGTGGAAG+TGG | + | chr4.3:84200762-84200781 | MS.gene33677:CDS | 50.0% | |
TACTGGCACGACATAGTGAG+TGG | + | chr4.3:84200465-84200484 | MS.gene33677:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 84200297 | 84200890 | 84200297 | ID=MS.gene33677 |
chr4.3 | mRNA | 84200297 | 84200890 | 84200297 | ID=MS.gene33677.t1;Parent=MS.gene33677 |
chr4.3 | exon | 84200297 | 84200890 | 84200297 | ID=MS.gene33677.t1.exon1;Parent=MS.gene33677.t1 |
chr4.3 | CDS | 84200297 | 84200890 | 84200297 | ID=cds.MS.gene33677.t1;Parent=MS.gene33677.t1 |
Gene Sequence |
Protein sequence |