Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34175.t1 | KEH24833.1 | 97.9 | 334 | 7 | 0 | 1 | 334 | 137 | 470 | 5.50E-188 | 666.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34175.t1 | Q94AY1 | 74.8 | 330 | 81 | 1 | 1 | 328 | 312 | 641 | 2.5e-141 | 503.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34175.t1 | G7KIS1 | 97.9 | 334 | 7 | 0 | 1 | 334 | 312 | 645 | 3.9e-188 | 666.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049396 | MS.gene34175 | 0.802765 | 4.80E-49 | -1.69E-46 |
| MS.gene049656 | MS.gene34175 | 0.822799 | 1.95E-53 | -1.69E-46 |
| MS.gene052346 | MS.gene34175 | 0.817874 | 2.63E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene34175 | 0.812379 | 4.37E-51 | -1.69E-46 |
| MS.gene052999 | MS.gene34175 | 0.818274 | 2.13E-52 | -1.69E-46 |
| MS.gene053449 | MS.gene34175 | 0.802474 | 5.52E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene34175 | 0.800408 | 1.46E-48 | -1.69E-46 |
| MS.gene055741 | MS.gene34175 | 0.808341 | 3.25E-50 | -1.69E-46 |
| MS.gene056166 | MS.gene34175 | 0.82653 | 2.58E-54 | -1.69E-46 |
| MS.gene056878 | MS.gene34175 | 0.800953 | 1.13E-48 | -1.69E-46 |
| MS.gene057076 | MS.gene34175 | 0.815517 | 8.88E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene34175 | 0.818964 | 1.49E-52 | -1.69E-46 |
| MS.gene058120 | MS.gene34175 | 0.811867 | 5.65E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene34175 | 0.830268 | 3.23E-55 | -1.69E-46 |
| MS.gene060837 | MS.gene34175 | 0.803125 | 4.05E-49 | -1.69E-46 |
| MS.gene06097 | MS.gene34175 | 0.810099 | 1.36E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34175.t1 | MTR_6g007070 | 97.904 | 334 | 7 | 0 | 1 | 334 | 312 | 645 | 0.0 | 685 |
| MS.gene34175.t1 | MTR_6g007070 | 97.904 | 334 | 7 | 0 | 1 | 334 | 137 | 470 | 0.0 | 683 |
| MS.gene34175.t1 | MTR_5g020050 | 31.307 | 329 | 171 | 12 | 1 | 299 | 183 | 486 | 5.95e-34 | 131 |
| MS.gene34175.t1 | MTR_5g020050 | 31.307 | 329 | 171 | 12 | 1 | 299 | 276 | 579 | 9.87e-34 | 131 |
| MS.gene34175.t1 | MTR_5g020050 | 31.307 | 329 | 171 | 12 | 1 | 299 | 276 | 579 | 1.22e-33 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34175.t1 | AT5G14760 | 74.848 | 330 | 81 | 1 | 1 | 328 | 312 | 641 | 0.0 | 521 |
| MS.gene34175.t1 | AT5G66760 | 32.036 | 334 | 186 | 10 | 6 | 306 | 269 | 594 | 3.51e-36 | 138 |
| MS.gene34175.t1 | AT2G18450 | 31.045 | 335 | 186 | 9 | 6 | 305 | 267 | 591 | 3.69e-34 | 132 |
Find 85 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTTAATGCATCAAATTTA+TGG | 0.148179 | 6.3:+2749536 | MS.gene34175:CDS |
| ATCTCAGGCACCACCATTAT+TGG | 0.226815 | 6.3:-2749766 | None:intergenic |
| GAACTCCATGTACTGTTTAA+AGG | 0.233252 | 6.3:-2749937 | None:intergenic |
| ACCATAAATTTGATGCATTA+AGG | 0.255305 | 6.3:-2749537 | None:intergenic |
| TCGGCAATCTTGAGGCAAAA+TGG | 0.300395 | 6.3:+2749713 | MS.gene34175:CDS |
| TTTCCATGGCTAAATTATAA+AGG | 0.315559 | 6.3:-2749093 | None:intergenic |
| CTTTCACATTTGTCTCTCCT+TGG | 0.347133 | 6.3:-2749372 | None:intergenic |
| CAGTTCTTTCCTCAATTCTT+CGG | 0.357771 | 6.3:-2749620 | None:intergenic |
| TAATGAGCAGCTGGAACAAC+GGG | 0.379827 | 6.3:-2749322 | None:intergenic |
| GCTTCGACATGTCTTCAGTA+TGG | 0.381330 | 6.3:+2749274 | MS.gene34175:CDS |
| CTAGGCTCGGTTGGTTTAAG+AGG | 0.397419 | 6.3:-2749022 | None:intergenic |
| GACATGTCTTCAGTATGGTT+TGG | 0.412175 | 6.3:+2749279 | MS.gene34175:CDS |
| CGGCAATCTTGAGGCAAAAT+GGG | 0.412535 | 6.3:+2749714 | MS.gene34175:CDS |
| TGGGAGAGAATTTCATTCTT+CGG | 0.415928 | 6.3:-2749238 | None:intergenic |
| AGACATGTCGAAGCAATGTT+TGG | 0.421059 | 6.3:-2749265 | None:intergenic |
| TTTCTCATTTCACATATCTC+AGG | 0.425640 | 6.3:-2749781 | None:intergenic |
| ATCTATCATGTTTAACTATG+TGG | 0.428518 | 6.3:+2749645 | MS.gene34175:CDS |
| TTCTGATATCTGAAGCTGTA+AGG | 0.435505 | 6.3:+2749056 | MS.gene34175:CDS |
| TCGAAGCAATGTTTGGAAAG+TGG | 0.440885 | 6.3:-2749258 | None:intergenic |
| TATCCGCGACCGAAGAATTG+AGG | 0.444160 | 6.3:+2749611 | MS.gene34175:CDS |
| AAGAGGAGAGCTTGCTCCTA+GGG | 0.459707 | 6.3:+2749138 | MS.gene34175:CDS |
| GCAGCTGGAACAACGGGGAT+TGG | 0.461014 | 6.3:-2749316 | None:intergenic |
| GAAGTCTCTCACTTTCTTCG+AGG | 0.463646 | 6.3:-2749891 | None:intergenic |
| GCATGGATGGAAACCAATAA+TGG | 0.463945 | 6.3:+2749753 | MS.gene34175:CDS |
| ATGCCTTTGTATGATAAAAG+AGG | 0.468872 | 6.3:+2749121 | MS.gene34175:CDS |
| CCAACTTAGCACAACAAAAG+AGG | 0.468990 | 6.3:-2749804 | None:intergenic |
| GTACTGTTTAAAGGTGAACT+TGG | 0.479922 | 6.3:-2749928 | None:intergenic |
| AATGGGAGGAGTATCTGTTT+AGG | 0.484557 | 6.3:+2749731 | MS.gene34175:CDS |
| GCATTATCCCTAGGCTCGGT+TGG | 0.488079 | 6.3:-2749031 | None:intergenic |
| CCGACTGCGTTAGCTGATGA+AGG | 0.489710 | 6.3:+2748995 | MS.gene34175:CDS |
| CGAAGCAATGTTTGGAAAGT+GGG | 0.489970 | 6.3:-2749257 | None:intergenic |
| GCATTACTTCCAAGTGAAAA+CGG | 0.492861 | 6.3:-2749574 | None:intergenic |
| AAAGAGGAGAGCTTGCTCCT+AGG | 0.504089 | 6.3:+2749137 | MS.gene34175:CDS |
| CTTTCGAGGCACGAGAGCCG+CGG | 0.514164 | 6.3:+2749841 | MS.gene34175:CDS |
| CTCTTAAACCAACCGAGCCT+AGG | 0.516548 | 6.3:+2749023 | MS.gene34175:CDS |
| ATTTGTCTCTCCTTGGAGCC+CGG | 0.517220 | 6.3:-2749365 | None:intergenic |
| GGAGTTCATGCCGGGCTCCA+AGG | 0.519634 | 6.3:+2749355 | MS.gene34175:CDS |
| CTCTCACTTTCTTCGAGGTG+AGG | 0.521620 | 6.3:-2749886 | None:intergenic |
| GAATTTCATTCTTCGGCTTG+TGG | 0.521915 | 6.3:-2749231 | None:intergenic |
| TCTATCATGTTTAACTATGT+GGG | 0.522482 | 6.3:+2749646 | MS.gene34175:CDS |
| TGGTTAGTAGTGCGCTTTCG+AGG | 0.525344 | 6.3:+2749827 | MS.gene34175:CDS |
| TTGATGCCTTGTTGATACAT+AGG | 0.531890 | 6.3:-2749979 | None:intergenic |
| CCACACATGTAATGAGCAGC+TGG | 0.536792 | 6.3:-2749331 | None:intergenic |
| TTTATAATTTAGCCATGGAA+AGG | 0.537153 | 6.3:+2749095 | MS.gene34175:CDS |
| AGTATCTGTTTAGGCATGGA+TGG | 0.538435 | 6.3:+2749740 | MS.gene34175:CDS |
| TTTCCTCAATTCTTCGGTCG+CGG | 0.539636 | 6.3:-2749614 | None:intergenic |
| GTAGCATGTACCGGTCTACA+TGG | 0.539982 | 6.3:+2749415 | MS.gene34175:CDS |
| ATGTGTGGAGGAGTTCATGC+CGG | 0.544045 | 6.3:+2749346 | MS.gene34175:CDS |
| AATTTGATGCATTAAGGTCG+AGG | 0.544390 | 6.3:-2749531 | None:intergenic |
| CTCTTCATTTGATCAACTGA+CGG | 0.546770 | 6.3:-2749502 | None:intergenic |
| GTTCACCTTTAAACAGTACA+TGG | 0.546862 | 6.3:+2749932 | MS.gene34175:CDS |
| TCTGATATCTGAAGCTGTAA+GGG | 0.547002 | 6.3:+2749057 | MS.gene34175:CDS |
| GTAATGAGCAGCTGGAACAA+CGG | 0.547420 | 6.3:-2749323 | None:intergenic |
| TCGGCTTGTGGCTAATGTCA+AGG | 0.551992 | 6.3:-2749219 | None:intergenic |
| TTCGAGGTGAGGAAAATCAA+TGG | 0.552185 | 6.3:-2749875 | None:intergenic |
| TGTGTGGAGGAGTTCATGCC+GGG | 0.559044 | 6.3:+2749347 | MS.gene34175:CDS |
| CATCCTTTATAATTTAGCCA+TGG | 0.563439 | 6.3:+2749090 | MS.gene34175:CDS |
| GTGAAAGGTCTGTATGTAGC+AGG | 0.569163 | 6.3:+2749388 | MS.gene34175:CDS |
| TCTTAAACCAACCGAGCCTA+GGG | 0.572863 | 6.3:+2749024 | MS.gene34175:CDS |
| TCTGAAGCTGTAAGGGGTGA+TGG | 0.578436 | 6.3:+2749064 | MS.gene34175:CDS |
| TCTATTTGCTCCATGTAGAC+CGG | 0.579965 | 6.3:-2749425 | None:intergenic |
| CAAAGGCATAAACCTTTCCA+TGG | 0.580948 | 6.3:-2749107 | None:intergenic |
| AAATTTATGGTCAAGACCTA+CGG | 0.591700 | 6.3:+2749549 | MS.gene34175:CDS |
| CATCAGCTAACGCAGTCGGA+TGG | 0.603484 | 6.3:-2748991 | None:intergenic |
| AAATGCATTATCCCTAGGCT+CGG | 0.603895 | 6.3:-2749035 | None:intergenic |
| CTTCTTGCGACTACATCCCT+AGG | 0.603957 | 6.3:-2749154 | None:intergenic |
| GAGGAGTATCTGTTTAGGCA+TGG | 0.605375 | 6.3:+2749736 | MS.gene34175:CDS |
| GCAGGTGAGGTAGCATGTAC+CGG | 0.606264 | 6.3:+2749406 | MS.gene34175:CDS |
| CGACTGCGTTAGCTGATGAA+GGG | 0.607186 | 6.3:+2748996 | MS.gene34175:CDS |
| ATCAGAAATGCATTATCCCT+AGG | 0.611819 | 6.3:-2749040 | None:intergenic |
| CTGATATCTGAAGCTGTAAG+GGG | 0.611963 | 6.3:+2749058 | MS.gene34175:CDS |
| CCTTCATCAGCTAACGCAGT+CGG | 0.612850 | 6.3:-2748995 | None:intergenic |
| CAAGGAGAGACAAATGTGAA+AGG | 0.613365 | 6.3:+2749373 | MS.gene34175:CDS |
| CCAAGTGAAAACGGCACCGT+AGG | 0.618506 | 6.3:-2749565 | None:intergenic |
| CCAGCTGCTCATTACATGTG+TGG | 0.637539 | 6.3:+2749331 | MS.gene34175:CDS |
| AGGTCTGTATGTAGCAGGTG+AGG | 0.652476 | 6.3:+2749393 | MS.gene34175:CDS |
| AGCTAGCAACTCATTGCTCG+AGG | 0.659792 | 6.3:+2749450 | MS.gene34175:CDS |
| CAATCTTGAGGCAAAATGGG+AGG | 0.661771 | 6.3:+2749717 | MS.gene34175:CDS |
| GCTGCTCATTACATGTGTGG+AGG | 0.662270 | 6.3:+2749334 | MS.gene34175:CDS |
| CAATGGTGTAATGTAAACCG+CGG | 0.681165 | 6.3:-2749858 | None:intergenic |
| AAGCAGCCTATGTATCAACA+AGG | 0.691785 | 6.3:+2749973 | MS.gene34175:CDS |
| GAAGCTGTAAGGGGTGATGG+TGG | 0.705456 | 6.3:+2749067 | MS.gene34175:CDS |
| TGGATGGAAACCAATAATGG+TGG | 0.724245 | 6.3:+2749756 | MS.gene34175:CDS |
| AATGAGCAGCTGGAACAACG+GGG | 0.776584 | 6.3:-2749321 | None:intergenic |
| GAATCGTGAGATCAACAACG+TGG | 0.804485 | 6.3:+2749668 | MS.gene34175:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACCATAAATTTGATGCATTA+AGG | - | chr6.3:2749540-2749559 | None:intergenic | 25.0% |
| ! | ACCTTAATGCATCAAATTTA+TGG | + | chr6.3:2749536-2749555 | MS.gene34175:CDS | 25.0% |
| ! | ATCTATCATGTTTAACTATG+TGG | + | chr6.3:2749645-2749664 | MS.gene34175:CDS | 25.0% |
| ! | GAACTTGGAAAAATAATTGT+TGG | - | chr6.3:2749916-2749935 | None:intergenic | 25.0% |
| ! | TCTATCATGTTTAACTATGT+GGG | + | chr6.3:2749646-2749665 | MS.gene34175:CDS | 25.0% |
| ! | TTTATAATTTAGCCATGGAA+AGG | + | chr6.3:2749095-2749114 | MS.gene34175:CDS | 25.0% |
| ! | TTTCCATGGCTAAATTATAA+AGG | - | chr6.3:2749096-2749115 | None:intergenic | 25.0% |
| AAATTTATGGTCAAGACCTA+CGG | + | chr6.3:2749549-2749568 | MS.gene34175:CDS | 30.0% | |
| ATGCCTTTGTATGATAAAAG+AGG | + | chr6.3:2749121-2749140 | MS.gene34175:CDS | 30.0% | |
| CATCCTTTATAATTTAGCCA+TGG | + | chr6.3:2749090-2749109 | MS.gene34175:CDS | 30.0% | |
| TTTCTCATTTCACATATCTC+AGG | - | chr6.3:2749784-2749803 | None:intergenic | 30.0% | |
| ! | TCTCCTCTTTTATCATACAA+AGG | - | chr6.3:2749127-2749146 | None:intergenic | 30.0% |
| AATTTGATGCATTAAGGTCG+AGG | - | chr6.3:2749534-2749553 | None:intergenic | 35.0% | |
| ATCAGAAATGCATTATCCCT+AGG | - | chr6.3:2749043-2749062 | None:intergenic | 35.0% | |
| CAGTTCTTTCCTCAATTCTT+CGG | - | chr6.3:2749623-2749642 | None:intergenic | 35.0% | |
| CTCTTCATTTGATCAACTGA+CGG | - | chr6.3:2749505-2749524 | None:intergenic | 35.0% | |
| GAACTCCATGTACTGTTTAA+AGG | - | chr6.3:2749940-2749959 | None:intergenic | 35.0% | |
| GCATTACTTCCAAGTGAAAA+CGG | - | chr6.3:2749577-2749596 | None:intergenic | 35.0% | |
| GTACTGTTTAAAGGTGAACT+TGG | - | chr6.3:2749931-2749950 | None:intergenic | 35.0% | |
| GTTCACCTTTAAACAGTACA+TGG | + | chr6.3:2749932-2749951 | MS.gene34175:CDS | 35.0% | |
| TGGGAGAGAATTTCATTCTT+CGG | - | chr6.3:2749241-2749260 | None:intergenic | 35.0% | |
| ! | CGCGGATAAAATTTTGTCAT+TGG | - | chr6.3:2749599-2749618 | None:intergenic | 35.0% |
| ! | TCTGATATCTGAAGCTGTAA+GGG | + | chr6.3:2749057-2749076 | MS.gene34175:CDS | 35.0% |
| ! | TTCTGATATCTGAAGCTGTA+AGG | + | chr6.3:2749056-2749075 | MS.gene34175:CDS | 35.0% |
| ! | TTGATGCCTTGTTGATACAT+AGG | - | chr6.3:2749982-2750001 | None:intergenic | 35.0% |
| !!! | TTTCGTTGCGCTTTTTAAGT+TGG | - | chr6.3:2749189-2749208 | None:intergenic | 35.0% |
| AAATGCATTATCCCTAGGCT+CGG | - | chr6.3:2749038-2749057 | None:intergenic | 40.0% | |
| AAGCAGCCTATGTATCAACA+AGG | + | chr6.3:2749973-2749992 | MS.gene34175:CDS | 40.0% | |
| AGACATGTCGAAGCAATGTT+TGG | - | chr6.3:2749268-2749287 | None:intergenic | 40.0% | |
| AGTATCTGTTTAGGCATGGA+TGG | + | chr6.3:2749740-2749759 | MS.gene34175:CDS | 40.0% | |
| CAAGGAGAGACAAATGTGAA+AGG | + | chr6.3:2749373-2749392 | MS.gene34175:CDS | 40.0% | |
| CAATGGTGTAATGTAAACCG+CGG | - | chr6.3:2749861-2749880 | None:intergenic | 40.0% | |
| CCAACTTAGCACAACAAAAG+AGG | - | chr6.3:2749807-2749826 | None:intergenic | 40.0% | |
| CGAAGCAATGTTTGGAAAGT+GGG | - | chr6.3:2749260-2749279 | None:intergenic | 40.0% | |
| CTTTCACATTTGTCTCTCCT+TGG | - | chr6.3:2749375-2749394 | None:intergenic | 40.0% | |
| GACATGTCTTCAGTATGGTT+TGG | + | chr6.3:2749279-2749298 | MS.gene34175:CDS | 40.0% | |
| GAGAAAAATCGGCAATCTTG+AGG | + | chr6.3:2749705-2749724 | MS.gene34175:CDS | 40.0% | |
| GAGACAGCTGAGAGAAAAAT+CGG | + | chr6.3:2749694-2749713 | MS.gene34175:CDS | 40.0% | |
| GCATGGATGGAAACCAATAA+TGG | + | chr6.3:2749753-2749772 | MS.gene34175:CDS | 40.0% | |
| TCGAAGCAATGTTTGGAAAG+TGG | - | chr6.3:2749261-2749280 | None:intergenic | 40.0% | |
| TCTATTTGCTCCATGTAGAC+CGG | - | chr6.3:2749428-2749447 | None:intergenic | 40.0% | |
| TGGATGGAAACCAATAATGG+TGG | + | chr6.3:2749756-2749775 | MS.gene34175:CDS | 40.0% | |
| TTCGAGGTGAGGAAAATCAA+TGG | - | chr6.3:2749878-2749897 | None:intergenic | 40.0% | |
| ! | CAAAGGCATAAACCTTTCCA+TGG | - | chr6.3:2749110-2749129 | None:intergenic | 40.0% |
| ! | CTGATATCTGAAGCTGTAAG+GGG | + | chr6.3:2749058-2749077 | MS.gene34175:CDS | 40.0% |
| ! | GAATTTCATTCTTCGGCTTG+TGG | - | chr6.3:2749234-2749253 | None:intergenic | 40.0% |
| !! | AATGGGAGGAGTATCTGTTT+AGG | + | chr6.3:2749731-2749750 | MS.gene34175:CDS | 40.0% |
| !! | CCTCTTTTGTTGTGCTAAGT+TGG | + | chr6.3:2749804-2749823 | MS.gene34175:CDS | 40.0% |
| !! | CTTTTGTTGTGCTAAGTTGG+TGG | + | chr6.3:2749807-2749826 | MS.gene34175:CDS | 40.0% |
| ATCTCAGGCACCACCATTAT+TGG | - | chr6.3:2749769-2749788 | None:intergenic | 45.0% | |
| CAATCTTGAGGCAAAATGGG+AGG | + | chr6.3:2749717-2749736 | MS.gene34175:CDS | 45.0% | |
| CGGCAATCTTGAGGCAAAAT+GGG | + | chr6.3:2749714-2749733 | MS.gene34175:CDS | 45.0% | |
| GAAGTCTCTCACTTTCTTCG+AGG | - | chr6.3:2749894-2749913 | None:intergenic | 45.0% | |
| GAATCGTGAGATCAACAACG+TGG | + | chr6.3:2749668-2749687 | MS.gene34175:CDS | 45.0% | |
| GCTTCGACATGTCTTCAGTA+TGG | + | chr6.3:2749274-2749293 | MS.gene34175:CDS | 45.0% | |
| GTAATGAGCAGCTGGAACAA+CGG | - | chr6.3:2749326-2749345 | None:intergenic | 45.0% | |
| GTGAAAGGTCTGTATGTAGC+AGG | + | chr6.3:2749388-2749407 | MS.gene34175:CDS | 45.0% | |
| TAATGAGCAGCTGGAACAAC+GGG | - | chr6.3:2749325-2749344 | None:intergenic | 45.0% | |
| TCGGCAATCTTGAGGCAAAA+TGG | + | chr6.3:2749713-2749732 | MS.gene34175:CDS | 45.0% | |
| TCTTAAACCAACCGAGCCTA+GGG | + | chr6.3:2749024-2749043 | MS.gene34175:CDS | 45.0% | |
| TTTCCTCAATTCTTCGGTCG+CGG | - | chr6.3:2749617-2749636 | None:intergenic | 45.0% | |
| !! | GAGGAGTATCTGTTTAGGCA+TGG | + | chr6.3:2749736-2749755 | MS.gene34175:CDS | 45.0% |
| AATGAGCAGCTGGAACAACG+GGG | - | chr6.3:2749324-2749343 | None:intergenic | 50.0% | |
| AGCTAGCAACTCATTGCTCG+AGG | + | chr6.3:2749450-2749469 | MS.gene34175:CDS | 50.0% | |
| AGGTCTGTATGTAGCAGGTG+AGG | + | chr6.3:2749393-2749412 | MS.gene34175:CDS | 50.0% | |
| ATGTGTGGAGGAGTTCATGC+CGG | + | chr6.3:2749346-2749365 | MS.gene34175:CDS | 50.0% | |
| ATTTGTCTCTCCTTGGAGCC+CGG | - | chr6.3:2749368-2749387 | None:intergenic | 50.0% | |
| CCACACATGTAATGAGCAGC+TGG | - | chr6.3:2749334-2749353 | None:intergenic | 50.0% | |
| CCAGCTGCTCATTACATGTG+TGG | + | chr6.3:2749331-2749350 | MS.gene34175:CDS | 50.0% | |
| CCTTCATCAGCTAACGCAGT+CGG | - | chr6.3:2748998-2749017 | None:intergenic | 50.0% | |
| CGACTGCGTTAGCTGATGAA+GGG | + | chr6.3:2748996-2749015 | MS.gene34175:CDS | 50.0% | |
| CTCTCACTTTCTTCGAGGTG+AGG | - | chr6.3:2749889-2749908 | None:intergenic | 50.0% | |
| CTCTTAAACCAACCGAGCCT+AGG | + | chr6.3:2749023-2749042 | MS.gene34175:CDS | 50.0% | |
| CTTCTTGCGACTACATCCCT+AGG | - | chr6.3:2749157-2749176 | None:intergenic | 50.0% | |
| GCTGCTCATTACATGTGTGG+AGG | + | chr6.3:2749334-2749353 | MS.gene34175:CDS | 50.0% | |
| TATCCGCGACCGAAGAATTG+AGG | + | chr6.3:2749611-2749630 | MS.gene34175:CDS | 50.0% | |
| TGGTTAGTAGTGCGCTTTCG+AGG | + | chr6.3:2749827-2749846 | MS.gene34175:CDS | 50.0% | |
| ! | AAAGAGGAGAGCTTGCTCCT+AGG | + | chr6.3:2749137-2749156 | MS.gene34175:CDS | 50.0% |
| ! | AAGAGGAGAGCTTGCTCCTA+GGG | + | chr6.3:2749138-2749157 | MS.gene34175:CDS | 50.0% |
| ! | GTAGCATGTACCGGTCTACA+TGG | + | chr6.3:2749415-2749434 | MS.gene34175:CDS | 50.0% |
| ! | TCGGCTTGTGGCTAATGTCA+AGG | - | chr6.3:2749222-2749241 | None:intergenic | 50.0% |
| ! | TCTGAAGCTGTAAGGGGTGA+TGG | + | chr6.3:2749064-2749083 | MS.gene34175:CDS | 50.0% |
| !! | CTAGGCTCGGTTGGTTTAAG+AGG | - | chr6.3:2749025-2749044 | None:intergenic | 50.0% |
| CATCAGCTAACGCAGTCGGA+TGG | - | chr6.3:2748994-2749013 | None:intergenic | 55.0% | |
| CCAAGTGAAAACGGCACCGT+AGG | - | chr6.3:2749568-2749587 | None:intergenic | 55.0% | |
| CCGACTGCGTTAGCTGATGA+AGG | + | chr6.3:2748995-2749014 | MS.gene34175:CDS | 55.0% | |
| GCAGGTGAGGTAGCATGTAC+CGG | + | chr6.3:2749406-2749425 | MS.gene34175:CDS | 55.0% | |
| TGTGTGGAGGAGTTCATGCC+GGG | + | chr6.3:2749347-2749366 | MS.gene34175:CDS | 55.0% | |
| ! | GAAGCTGTAAGGGGTGATGG+TGG | + | chr6.3:2749067-2749086 | MS.gene34175:CDS | 55.0% |
| ! | GCATTATCCCTAGGCTCGGT+TGG | - | chr6.3:2749034-2749053 | None:intergenic | 55.0% |
| !!! | CCTACGGTGCCGTTTTCACT+TGG | + | chr6.3:2749565-2749584 | MS.gene34175:CDS | 55.0% |
| GCAGCTGGAACAACGGGGAT+TGG | - | chr6.3:2749319-2749338 | None:intergenic | 60.0% | |
| CTTTCGAGGCACGAGAGCCG+CGG | + | chr6.3:2749841-2749860 | MS.gene34175:CDS | 65.0% | |
| GGAGTTCATGCCGGGCTCCA+AGG | + | chr6.3:2749355-2749374 | MS.gene34175:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 2748989 | 2750014 | 2748989 | ID=MS.gene34175 |
| chr6.3 | mRNA | 2748989 | 2750014 | 2748989 | ID=MS.gene34175.t1;Parent=MS.gene34175 |
| chr6.3 | exon | 2748989 | 2750014 | 2748989 | ID=MS.gene34175.t1.exon1;Parent=MS.gene34175.t1 |
| chr6.3 | CDS | 2748989 | 2750014 | 2748989 | ID=cds.MS.gene34175.t1;Parent=MS.gene34175.t1 |
| Gene Sequence |
| Protein sequence |
