AlfalfaGEDB | MS.gene34175

M. sativa cultivar XinJiangDaYe / MS.gene34175

KEGG: K00278
GO: GO:0003674 GO:0003824 GO:0008150 GO:0008152 GO:0016491 GO:0055114
PFAM: PF00890.27 PF02910.23

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34175.t1	KEH24833.1	97.9	334	7	0	1	334	137	470	5.50E-188	666.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34175.t1	Q94AY1	74.8	330	81	1	1	328	312	641	2.5e-141	503.1

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34175.t1	G7KIS1	97.9	334	7	0	1	334	312	645	3.9e-188	666.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049396	MS.gene34175	0.802765	4.80E-49	-1.69E-46
MS.gene049656	MS.gene34175	0.822799	1.95E-53	-1.69E-46
MS.gene052346	MS.gene34175	0.817874	2.63E-52	-1.69E-46
MS.gene052966	MS.gene34175	0.812379	4.37E-51	-1.69E-46
MS.gene052999	MS.gene34175	0.818274	2.13E-52	-1.69E-46
MS.gene053449	MS.gene34175	0.802474	5.52E-49	-1.69E-46
MS.gene053824	MS.gene34175	0.800408	1.46E-48	-1.69E-46
MS.gene055741	MS.gene34175	0.808341	3.25E-50	-1.69E-46
MS.gene056166	MS.gene34175	0.82653	2.58E-54	-1.69E-46
MS.gene056878	MS.gene34175	0.800953	1.13E-48	-1.69E-46

Showing 1 to 10 of 16 entries

Previous1 2Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34175.t1	MTR_6g007070	97.904	334	7	0	1	334	312	645	0.0	685
MS.gene34175.t1	MTR_6g007070	97.904	334	7	0	1	334	137	470	0.0	683
MS.gene34175.t1	MTR_5g020050	31.307	329	171	12	1	299	183	486	5.95e-34	131
MS.gene34175.t1	MTR_5g020050	31.307	329	171	12	1	299	276	579	9.87e-34	131
MS.gene34175.t1	MTR_5g020050	31.307	329	171	12	1	299	276	579	1.22e-33	130

Showing 1 to 5 of 5 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34175.t1	AT5G14760	74.848	330	81	1	1	328	312	641	0.0	521
MS.gene34175.t1	AT5G66760	32.036	334	186	10	6	306	269	594	3.51e-36	138
MS.gene34175.t1	AT2G18450	31.045	335	186	9	6	305	267	591	3.69e-34	132

Showing 1 to 3 of 3 entries

Previous1Next

Find 85 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGGAGAGCTTGCTCCT+AGG	0.504089	6.3:+2749137	MS.gene34175:CDS
AAATGCATTATCCCTAGGCT+CGG	0.603895	6.3:-2749035	None:intergenic
AAATTTATGGTCAAGACCTA+CGG	0.591700	6.3:+2749549	MS.gene34175:CDS
AAGAGGAGAGCTTGCTCCTA+GGG	0.459707	6.3:+2749138	MS.gene34175:CDS
AAGCAGCCTATGTATCAACA+AGG	0.691785	6.3:+2749973	MS.gene34175:CDS
AATGAGCAGCTGGAACAACG+GGG	0.776584	6.3:-2749321	None:intergenic
AATGGGAGGAGTATCTGTTT+AGG	0.484557	6.3:+2749731	MS.gene34175:CDS
AATTTGATGCATTAAGGTCG+AGG	0.544390	6.3:-2749531	None:intergenic
ACCATAAATTTGATGCATTA+AGG	0.255305	6.3:-2749537	None:intergenic
ACCTTAATGCATCAAATTTA+TGG	0.148179	6.3:+2749536	MS.gene34175:CDS

Showing 1 to 10 of 85 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATTTATGGTCAAGACCTA+CGG	+	chr6.3:2749549-2749568	MS.gene34175:CDS	30.0%
ATGCCTTTGTATGATAAAAG+AGG	+	chr6.3:2749121-2749140	MS.gene34175:CDS	30.0%
CATCCTTTATAATTTAGCCA+TGG	+	chr6.3:2749090-2749109	MS.gene34175:CDS	30.0%
TTTCTCATTTCACATATCTC+AGG	-	chr6.3:2749784-2749803	None:intergenic	30.0%
AATTTGATGCATTAAGGTCG+AGG	-	chr6.3:2749534-2749553	None:intergenic	35.0%
ATCAGAAATGCATTATCCCT+AGG	-	chr6.3:2749043-2749062	None:intergenic	35.0%
CAGTTCTTTCCTCAATTCTT+CGG	-	chr6.3:2749623-2749642	None:intergenic	35.0%
CTCTTCATTTGATCAACTGA+CGG	-	chr6.3:2749505-2749524	None:intergenic	35.0%
GAACTCCATGTACTGTTTAA+AGG	-	chr6.3:2749940-2749959	None:intergenic	35.0%
GCATTACTTCCAAGTGAAAA+CGG	-	chr6.3:2749577-2749596	None:intergenic	35.0%

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	2748989	2750014	2748989	ID=MS.gene34175
chr6.3	mRNA	2748989	2750014	2748989	ID=MS.gene34175.t1;Parent=MS.gene34175
chr6.3	exon	2748989	2750014	2748989	ID=MS.gene34175.t1.exon1;Parent=MS.gene34175.t1
chr6.3	CDS	2748989	2750014	2748989	ID=cds.MS.gene34175.t1;Parent=MS.gene34175.t1

Gene Sequence

>MS.gene34175

TTCCATCCGACTGCGTTAGCTGATGAAGGGCTTCCTCTTAAACCAACCGAGCCTAGGGATAATGCATTTCTGATATCTGAAGCTGTAAGGGGTGATGGTGGCATCCTTTATAATTTAGCCATGGAAAGGTTTATGCCTTTGTATGATAAAAGAGGAGAGCTTGCTCCTAGGGATGTAGTCGCAAGAAGTATAGACGACCAACTTAAAAAGCGCAACGAAAAGTACGTGCTCCTTGACATTAGCCACAAGCCGAAGAATGAAATTCTCTCCCACTTTCCAAACATTGCTTCGACATGTCTTCAGTATGGTTTGGACATAACACGTCATCCAATCCCCGTTGTTCCAGCTGCTCATTACATGTGTGGAGGAGTTCATGCCGGGCTCCAAGGAGAGACAAATGTGAAAGGTCTGTATGTAGCAGGTGAGGTAGCATGTACCGGTCTACATGGAGCAAATAGACTAGCTAGCAACTCATTGCTCGAGGCACTCGTTTTTGCGCAAAGAGCTGTTCAGCCGTCAGTTGATCAAATGAAGAGCTCTAGCCTCGACCTTAATGCATCAAATTTATGGTCAAGACCTACGGTGCCGTTTTCACTTGGAAGTAATGCCAATGACAAAATTTTATCCGCGACCGAAGAATTGAGGAAAGAACTGCAATCTATCATGTTTAACTATGTGGGAATCGTGAGATCAACAACGTGGTTAGAGACAGCTGAGAGAAAAATCGGCAATCTTGAGGCAAAATGGGAGGAGTATCTGTTTAGGCATGGATGGAAACCAATAATGGTGGTGCCTGAGATATGTGAAATGAGAAACCTCTTTTGTTGTGCTAAGTTGGTGGTTAGTAGTGCGCTTTCGAGGCACGAGAGCCGCGGTTTACATTACACCATTGATTTTCCTCACCTCGAAGAAAGTGAGAGACTTCCAACAATTATTTTTCCAAGTTCACCTTTAAACAGTACATGGAGTTCTAGACAATTACAGAAGCAGCCTATGTATCAACAAGGCATCAATTTATGCAAATAA

Protein sequence

>MS.gene34175.t1

FHPTALADEGLPLKPTEPRDNAFLISEAVRGDGGILYNLAMERFMPLYDKRGELAPRDVVARSIDDQLKKRNEKYVLLDISHKPKNEILSHFPNIASTCLQYGLDITRHPIPVVPAAHYMCGGVHAGLQGETNVKGLYVAGEVACTGLHGANRLASNSLLEALVFAQRAVQPSVDQMKSSSLDLNASNLWSRPTVPFSLGSNANDKILSATEELRKELQSIMFNYVGIVRSTTWLETAERKIGNLEAKWEEYLFRHGWKPIMVVPEICEMRNLFCCAKLVVSSALSRHESRGLHYTIDFPHLEESERLPTIIFPSSPLNSTWSSRQLQKQPMYQQGINLCK