Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34181.t1 | XP_013450797.1 | 97.6 | 700 | 17 | 0 | 1 | 700 | 1 | 700 | 0.00E+00 | 1338.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34181.t1 | Q9LII8 | 64.7 | 679 | 211 | 11 | 17 | 691 | 2 | 655 | 5.8e-233 | 808.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34181.t1 | A0A072U668 | 97.6 | 700 | 17 | 0 | 1 | 700 | 1 | 700 | 0.0e+00 | 1338.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050807 | MS.gene34181 | 0.845746 | 3.35E-59 | -1.69E-46 |
| MS.gene050808 | MS.gene34181 | 0.8141 | 1.83E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene34181 | 0.800283 | 1.55E-48 | -1.69E-46 |
| MS.gene051198 | MS.gene34181 | 0.815979 | 7.00E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene34181 | 0.808358 | 3.22E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene34181 | 0.810154 | 1.33E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene34181 | 0.809553 | 1.79E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene34181 | 0.80372 | 3.05E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene34181 | 0.827304 | 1.68E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene34181 | 0.806314 | 8.74E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene34181 | 0.824291 | 8.74E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene34181 | 0.824145 | 9.46E-54 | -1.69E-46 |
| MS.gene055468 | MS.gene34181 | 0.821818 | 3.30E-53 | -1.69E-46 |
| MS.gene055469 | MS.gene34181 | 0.826638 | 2.43E-54 | -1.69E-46 |
| MS.gene055608 | MS.gene34181 | 0.816757 | 4.69E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene34181 | 0.800837 | 1.19E-48 | -1.69E-46 |
| MS.gene057444 | MS.gene34181 | 0.802583 | 5.24E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene34181 | 0.803115 | 4.07E-49 | -1.69E-46 |
| MS.gene06052 | MS.gene34181 | 0.80316 | 3.98E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34181.t1 | MTR_6g007110 | 97.571 | 700 | 17 | 0 | 1 | 700 | 1 | 700 | 0.0 | 1411 |
| MS.gene34181.t1 | MTR_6g007110 | 97.297 | 629 | 17 | 0 | 1 | 629 | 1 | 629 | 0.0 | 1270 |
| MS.gene34181.t1 | MTR_3g077950 | 62.309 | 589 | 200 | 6 | 128 | 698 | 182 | 766 | 0.0 | 754 |
| MS.gene34181.t1 | MTR_3g077950 | 50.980 | 102 | 49 | 1 | 1 | 102 | 1 | 101 | 2.76e-19 | 93.2 |
| MS.gene34181.t1 | MTR_3g077950 | 62.309 | 589 | 200 | 6 | 128 | 698 | 210 | 794 | 0.0 | 754 |
| MS.gene34181.t1 | MTR_3g077950 | 50.980 | 102 | 49 | 1 | 1 | 102 | 29 | 129 | 2.46e-19 | 93.2 |
| MS.gene34181.t1 | MTR_4g106900 | 54.816 | 706 | 265 | 8 | 1 | 688 | 1 | 670 | 0.0 | 733 |
| MS.gene34181.t1 | MTR_8g099745 | 66.732 | 508 | 168 | 1 | 186 | 693 | 68 | 574 | 0.0 | 719 |
| MS.gene34181.t1 | MTR_8g027385 | 62.062 | 514 | 189 | 3 | 182 | 693 | 49 | 558 | 0.0 | 660 |
| MS.gene34181.t1 | MTR_2g023050 | 90.196 | 102 | 10 | 0 | 598 | 699 | 3 | 104 | 1.47e-56 | 189 |
| MS.gene34181.t1 | MTR_1g070145 | 27.273 | 495 | 327 | 7 | 190 | 669 | 98 | 574 | 9.74e-44 | 167 |
| MS.gene34181.t1 | MTR_6g006830 | 83.673 | 49 | 8 | 0 | 421 | 469 | 19 | 67 | 7.97e-23 | 92.8 |
| MS.gene34181.t1 | MTR_6g006860 | 43.182 | 132 | 24 | 4 | 272 | 396 | 37 | 124 | 2.11e-19 | 85.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34181.t1 | AT3G27960 | 65.667 | 667 | 199 | 12 | 30 | 691 | 14 | 655 | 0.0 | 849 |
| MS.gene34181.t1 | AT3G27960 | 65.667 | 667 | 199 | 12 | 30 | 691 | 14 | 655 | 0.0 | 849 |
| MS.gene34181.t1 | AT3G27960 | 65.124 | 605 | 182 | 11 | 30 | 629 | 14 | 594 | 0.0 | 763 |
| MS.gene34181.t1 | AT1G27500 | 57.746 | 639 | 255 | 6 | 55 | 688 | 14 | 642 | 0.0 | 730 |
| MS.gene34181.t1 | AT1G27500 | 57.903 | 639 | 254 | 7 | 55 | 688 | 25 | 653 | 0.0 | 730 |
| MS.gene34181.t1 | AT4G10840 | 58.566 | 572 | 221 | 4 | 132 | 693 | 29 | 594 | 0.0 | 684 |
| MS.gene34181.t1 | AT4G10840 | 57.677 | 508 | 200 | 3 | 132 | 629 | 29 | 531 | 0.0 | 602 |
| MS.gene34181.t1 | AT2G31240 | 27.178 | 482 | 338 | 6 | 190 | 665 | 116 | 590 | 7.33e-41 | 159 |
Find 130 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAACAAGGCTCTTAATTT+TGG | 0.161726 | 6.3:-2963746 | MS.gene34181:CDS |
| CGAAGAGGCTAGGACTATTT+TGG | 0.164311 | 6.3:-2962586 | MS.gene34181:CDS |
| GCAACAATTTACTGTAATTT+AGG | 0.168017 | 6.3:-2963641 | MS.gene34181:CDS |
| TCTTGGACCATTCTTGTTAA+AGG | 0.191617 | 6.3:-2963801 | MS.gene34181:CDS |
| GAAATTCAAGGGCAGGTCTT+AGG | 0.230396 | 6.3:-2963449 | MS.gene34181:CDS |
| GAATCACTTTGAATACTTCT+TGG | 0.258920 | 6.3:+2964247 | None:intergenic |
| TTTCCTGTTCCTTGCTCTTC+CGG | 0.286279 | 6.3:+2962108 | None:intergenic |
| GGTCATCTTGTTGGATATAT+TGG | 0.291335 | 6.3:-2964079 | MS.gene34181:CDS |
| TTACCTTCCCATTGCATCAT+AGG | 0.291421 | 6.3:+2962503 | None:intergenic |
| CTATAAACTCCTAAGGTATC+TGG | 0.302006 | 6.3:+2962540 | None:intergenic |
| TGCTTTAGAGCATTATGTTT+TGG | 0.303097 | 6.3:-2963225 | MS.gene34181:CDS |
| GGAGTCATGTATTATATGTT+AGG | 0.311098 | 6.3:-2962762 | MS.gene34181:CDS |
| TTCAATGCCTGCAATAACTA+TGG | 0.320521 | 6.3:-2964374 | None:intergenic |
| TGTTGGATGATTCTCTCCTT+TGG | 0.321402 | 6.3:+2963061 | None:intergenic |
| ATCGAGGATTGATTCAGAAT+TGG | 0.323268 | 6.3:-2964101 | MS.gene34181:CDS |
| TGTTGGATATATTGGTGATT+TGG | 0.328352 | 6.3:-2964071 | MS.gene34181:CDS |
| CACATCACCAATTCCAAACT+TGG | 0.334301 | 6.3:+2963677 | None:intergenic |
| TTTGCAGGGTGTATGCAATT+AGG | 0.340480 | 6.3:-2963533 | MS.gene34181:CDS |
| GCTGATCTATACAACAAAAT+AGG | 0.343980 | 6.3:-2963014 | MS.gene34181:CDS |
| GGGGAAACCGATCCTCGATT+TGG | 0.347286 | 6.3:-2963428 | MS.gene34181:CDS |
| TGAAGATGGTAAACCAAGTT+TGG | 0.349399 | 6.3:-2963690 | MS.gene34181:CDS |
| CATGCACTAGCTAAGTTTGC+AGG | 0.349500 | 6.3:-2963548 | MS.gene34181:CDS |
| GGAGTTTATAGCAATCTTGC+AGG | 0.350985 | 6.3:-2962528 | MS.gene34181:CDS |
| AAATTCAAGGGCAGGTCTTA+GGG | 0.362813 | 6.3:-2963448 | MS.gene34181:CDS |
| CCAAAATTAAGAGCCTTGTT+TGG | 0.374018 | 6.3:+2963746 | None:intergenic |
| CTTGTTACCTTTAACAAGAA+TGG | 0.379696 | 6.3:+2963794 | None:intergenic |
| TGCTGGAATTGAAGCACAAA+TGG | 0.389026 | 6.3:-2962784 | MS.gene34181:CDS |
| TCAATTGATTTAGCTATTGA+TGG | 0.390733 | 6.3:-2964226 | MS.gene34181:CDS |
| TCAGAATTGGGTCATCTTGT+TGG | 0.395318 | 6.3:-2964088 | MS.gene34181:CDS |
| AACAAGAATGGTCCAAGATC+AGG | 0.396193 | 6.3:+2963806 | None:intergenic |
| AAAGTAGAAGTTTGCATAAG+AGG | 0.396778 | 6.3:-2963928 | MS.gene34181:CDS |
| TCGAGGATTGATTCAGAATT+GGG | 0.399811 | 6.3:-2964100 | MS.gene34181:CDS |
| CTTATTGTGAAAACGCGCTT+CGG | 0.405558 | 6.3:-2962971 | MS.gene34181:CDS |
| AACAAGAGATATGATATCTT+CGG | 0.406845 | 6.3:-2963777 | MS.gene34181:CDS |
| CGTTTCTCATCGTCGACATC+AGG | 0.408278 | 6.3:+2962157 | None:intergenic |
| TGGTAAACCAAGTTTGGAAT+TGG | 0.411399 | 6.3:-2963684 | MS.gene34181:CDS |
| AATTCTTCCATAGTTATTGC+AGG | 0.413325 | 6.3:+2964367 | None:intergenic |
| AAGATATACAACAATGTTCC+TGG | 0.414393 | 6.3:-2962822 | MS.gene34181:CDS |
| ATCCATGAATGATATAGAAA+AGG | 0.416117 | 6.3:-2962871 | MS.gene34181:CDS |
| AGGCGATGCTTATTTATCAT+TGG | 0.422665 | 6.3:-2963141 | MS.gene34181:CDS |
| GGTCAACACAGTACTATTGC+TGG | 0.427720 | 6.3:-2962801 | MS.gene34181:CDS |
| AAGCCGGAAGAGCAAGGAAC+AGG | 0.427976 | 6.3:-2962111 | MS.gene34181:CDS |
| GCATAAGAGGCTTGGTTTGA+AGG | 0.433751 | 6.3:-2963855 | MS.gene34181:CDS |
| CCTCGTTAATAGCATACCTT+TGG | 0.436901 | 6.3:+2962622 | None:intergenic |
| GCCTGCATCGTTTGAAGAAG+CGG | 0.437353 | 6.3:-2963300 | MS.gene34181:CDS |
| GGACACAAGCAAGTCCCATT+TGG | 0.439623 | 6.3:+2962643 | None:intergenic |
| GGTGATGTGCCTTCATGTAT+TGG | 0.447562 | 6.3:-2963663 | MS.gene34181:CDS |
| TCAATCGAACGCTCGAGAAT+CGG | 0.452266 | 6.3:+2963599 | None:intergenic |
| ATCTCTTCTAGAGAGATTCC+TGG | 0.453647 | 6.3:+2962930 | None:intergenic |
| GGATGATGCAATTGAAATGT+TGG | 0.453999 | 6.3:-2962224 | MS.gene34181:CDS |
| GTTCTGATCAATCACCTTCA+AGG | 0.455701 | 6.3:-2964150 | MS.gene34181:CDS |
| TCCATGAATGATATAGAAAA+GGG | 0.457605 | 6.3:-2962870 | MS.gene34181:CDS |
| TTTGAATTATGTAATGAAGA+TGG | 0.461930 | 6.3:-2963704 | MS.gene34181:CDS |
| AATGAGAAGGGAACTAGAAA+AGG | 0.463055 | 6.3:-2963905 | MS.gene34181:CDS |
| AGGTGACACTTATGCAATGA+TGG | 0.466365 | 6.3:-2963513 | MS.gene34181:CDS |
| CCTAAGGTATCTGGATGATA+AGG | 0.466851 | 6.3:+2962549 | None:intergenic |
| GGAATTGCATTGAACCAAAT+GGG | 0.469011 | 6.3:-2962657 | MS.gene34181:CDS |
| CTTGATATTCACAAGGGAAA+CGG | 0.471028 | 6.3:-2963326 | MS.gene34181:CDS |
| GAAATGTTGGAATATGTTGT+TGG | 0.471399 | 6.3:-2962211 | MS.gene34181:CDS |
| TGAAAGCTATACACCTCATA+AGG | 0.473275 | 6.3:-2964314 | MS.gene34181:CDS |
| CCTTATCATCCAGATACCTT+AGG | 0.477868 | 6.3:-2962549 | MS.gene34181:CDS |
| TGGAATTGCATTGAACCAAA+TGG | 0.482345 | 6.3:-2962658 | MS.gene34181:CDS |
| GAGTTAGATAATCCTGATCT+TGG | 0.482765 | 6.3:-2963818 | MS.gene34181:CDS |
| TCTCTAGAAGAGATTGCAAA+TGG | 0.485821 | 6.3:-2962921 | MS.gene34181:CDS |
| AAGGGAACTAGAAAAGGAAA+TGG | 0.489596 | 6.3:-2963899 | MS.gene34181:CDS |
| GCAGTAAAGTTATCCTTATG+AGG | 0.489807 | 6.3:+2964301 | None:intergenic |
| ACAAGAGATATGATATCTTC+GGG | 0.492269 | 6.3:-2963776 | MS.gene34181:CDS |
| TCAGGAATTAGACGTTGCTT+CGG | 0.495316 | 6.3:-2963177 | MS.gene34181:CDS |
| AGCTAAGAAGCTGTGTCAAA+TGG | 0.495654 | 6.3:-2963351 | MS.gene34181:CDS |
| ATATGATGAGGAAGCATAAG+AGG | 0.497481 | 6.3:-2963868 | MS.gene34181:CDS |
| CAACAAAATAGGCAAGTTCA+AGG | 0.497660 | 6.3:-2963003 | MS.gene34181:CDS |
| ACAGCAGGTCTTGAAATTCA+AGG | 0.502264 | 6.3:-2963461 | MS.gene34181:CDS |
| GCTTCGGTTGATTGTAGCAT+AGG | 0.507105 | 6.3:-2963161 | MS.gene34181:CDS |
| CTTGGACTTAGTGTACTCCT+TGG | 0.507878 | 6.3:+2964265 | None:intergenic |
| AGCGGCTGATCGGAGATTGA+TGG | 0.508307 | 6.3:-2963282 | MS.gene34181:CDS |
| ACTTCTCATTTCATAAACAT+TGG | 0.511524 | 6.3:+2964171 | None:intergenic |
| ATGAGGAAGCATAAGAGGCT+TGG | 0.515392 | 6.3:-2963863 | MS.gene34181:CDS |
| GCAGGAACCTATGATGCAAT+GGG | 0.518109 | 6.3:-2962510 | MS.gene34181:CDS |
| AGGTCTTGAAATTCAAGGGC+AGG | 0.519274 | 6.3:-2963456 | MS.gene34181:CDS |
| GGTTATGGCGGAAAATCGTC+AGG | 0.523025 | 6.3:-2963195 | MS.gene34181:CDS |
| GCCGAGTTGTTAAAAGAAGC+CGG | 0.523460 | 6.3:-2962127 | MS.gene34181:CDS |
| GCGGCTGATCGGAGATTGAT+GGG | 0.524259 | 6.3:-2963281 | MS.gene34181:CDS |
| TGCAGGAACCTATGATGCAA+TGG | 0.524517 | 6.3:-2962511 | MS.gene34181:CDS |
| GCCGCTTCTTCAAACGATGC+AGG | 0.539483 | 6.3:+2963299 | None:intergenic |
| GCTGGAATTGAAGCACAAAT+GGG | 0.544451 | 6.3:-2962783 | MS.gene34181:CDS |
| CAGCAGGTCTTGAAATTCAA+GGG | 0.553020 | 6.3:-2963460 | MS.gene34181:CDS |
| TGTCACAACAGAAAATAAAG+AGG | 0.555241 | 6.3:-2964032 | MS.gene34181:CDS |
| GAGTCATGTATTATATGTTA+GGG | 0.556961 | 6.3:-2962761 | MS.gene34181:CDS |
| CGTTTGAAGAAGCGGCTGAT+CGG | 0.567330 | 6.3:-2963292 | MS.gene34181:CDS |
| AAGAGGCTTGGTTTGAAGGA+CGG | 0.569541 | 6.3:-2963851 | MS.gene34181:CDS |
| TTCTGATCAATCACCTTCAA+GGG | 0.570336 | 6.3:-2964149 | MS.gene34181:CDS |
| TTTGCATAAGAGGAATGAGA+AGG | 0.571407 | 6.3:-2963918 | MS.gene34181:CDS |
| TCGAGCACAAGGACCGGTGA+AGG | 0.574152 | 6.3:-2963971 | MS.gene34181:CDS |
| CTCGATTTGGCGAGACATGT+CGG | 0.574211 | 6.3:-2963415 | MS.gene34181:CDS |
| AAGATTGCTATAAACTCCTA+AGG | 0.575669 | 6.3:+2962533 | None:intergenic |
| CAATAACTTTCTCAATAGCA+TGG | 0.576173 | 6.3:+2963999 | None:intergenic |
| TGATTTCGATGATCCTTCAC+CGG | 0.577571 | 6.3:+2963958 | None:intergenic |
| GTTTCTTCGAGCACAAGGAC+CGG | 0.578106 | 6.3:-2963977 | MS.gene34181:CDS |
| CAGACTTGTTCGAAGAGGCT+AGG | 0.582573 | 6.3:-2962596 | MS.gene34181:CDS |
| GGTGACACTTATGCAATGAT+GGG | 0.583597 | 6.3:-2963512 | MS.gene34181:CDS |
| CGACATGTCTCGCCAAATCG+AGG | 0.586973 | 6.3:+2963416 | None:intergenic |
| TTATTGTTTCTTCGAGCACA+AGG | 0.588845 | 6.3:-2963982 | MS.gene34181:CDS |
| TGGGACTTGCTTGTGTCCAA+AGG | 0.597967 | 6.3:-2962638 | MS.gene34181:CDS |
| ACTCATATGGCGAAGAATCG+AGG | 0.598383 | 6.3:-2964117 | MS.gene34181:CDS |
| TAAAAGAAGCCGGAAGAGCA+AGG | 0.600639 | 6.3:-2962117 | MS.gene34181:CDS |
| GCAATAGTACTGTGTTGACC+AGG | 0.603485 | 6.3:+2962804 | None:intergenic |
| GGACTAATCTGTGACTCGAA+AGG | 0.608630 | 6.3:-2963260 | MS.gene34181:CDS |
| GTCGCGAAATTTCGTGCTAG+CGG | 0.612393 | 6.3:-2962702 | MS.gene34181:CDS |
| GGAATGAGAGAAGAGAAGCT+AGG | 0.614469 | 6.3:-2962190 | MS.gene34181:CDS |
| AATTCAAGGGCAGGTCTTAG+GGG | 0.616046 | 6.3:-2963447 | MS.gene34181:CDS |
| TTTGGCAAGCGTGGTTATGG+CGG | 0.616408 | 6.3:-2963207 | MS.gene34181:CDS |
| ATGCACTAGCTAAGTTTGCA+GGG | 0.620124 | 6.3:-2963547 | MS.gene34181:CDS |
| TCTTGACCATGCTCTAACAC+AGG | 0.621585 | 6.3:+2963572 | None:intergenic |
| TTGCATAAGAGGAATGAGAA+GGG | 0.622583 | 6.3:-2963917 | MS.gene34181:CDS |
| TCTCAAATTATAAAAGACAA+TGG | 0.623016 | 6.3:-2962049 | MS.gene34181:CDS |
| GATGTTCCTGTGTTAGAGCA+TGG | 0.625382 | 6.3:-2963578 | MS.gene34181:CDS |
| AAATTGTTGCCAATACATGA+AGG | 0.635151 | 6.3:+2963654 | None:intergenic |
| CGACGATGAGAAACGTAGGT+TGG | 0.637957 | 6.3:-2962149 | MS.gene34181:CDS |
| GGCTGCAGACTTGTTCGAAG+AGG | 0.641904 | 6.3:-2962601 | MS.gene34181:CDS |
| AATGGCTCTTGATATTCACA+AGG | 0.649667 | 6.3:-2963333 | MS.gene34181:CDS |
| GAACCTATGATGCAATGGGA+AGG | 0.656596 | 6.3:-2962506 | MS.gene34181:intron |
| CAGTGCTTGAACATGTGCCT+CGG | 0.663577 | 6.3:+2963385 | None:intergenic |
| TGTCTCGCCAAATCGAGGAT+CGG | 0.664805 | 6.3:+2963421 | None:intergenic |
| GACATGTCGGTATGTAGCCG+AGG | 0.665583 | 6.3:-2963402 | MS.gene34181:CDS |
| ATGGCTCTTGATATTCACAA+GGG | 0.677786 | 6.3:-2963332 | MS.gene34181:CDS |
| TTCGGGTGAGAATCCAAACA+AGG | 0.681160 | 6.3:-2963759 | MS.gene34181:CDS |
| CCAAAGGTATGCTATTAACG+AGG | 0.692619 | 6.3:-2962622 | MS.gene34181:CDS |
| CTGCTCAACAAGCATCACCA+AGG | 0.705437 | 6.3:-2964282 | MS.gene34181:CDS |
| ATGTCGACGATGAGAAACGT+AGG | 0.718474 | 6.3:-2962153 | MS.gene34181:CDS |
| TAATTTAGGACAGTACAATG+AGG | 0.731698 | 6.3:-2963627 | MS.gene34181:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATATAAAACAATGCAT+TGG | + | chr6.3:2964034-2964053 | None:intergenic | 15.0% |
| !! | TCTCAAATTATAAAAGACAA+TGG | - | chr6.3:2964354-2964373 | MS.gene34181:CDS | 20.0% |
| !! | TTTGAATTATGTAATGAAGA+TGG | - | chr6.3:2962699-2962718 | MS.gene34181:CDS | 20.0% |
| !!! | TAGTAATATGTTATTTGACA+TGG | + | chr6.3:2964058-2964077 | None:intergenic | 20.0% |
| ! | AAAAAATGCAAGGAGATTTA+AGG | + | chr6.3:2963939-2963958 | None:intergenic | 25.0% |
| ! | AAAAATGCAAGGAGATTTAA+GGG | + | chr6.3:2963938-2963957 | None:intergenic | 25.0% |
| ! | AACAAGAGATATGATATCTT+CGG | - | chr6.3:2962626-2962645 | MS.gene34181:CDS | 25.0% |
| ! | ACTTCTCATTTCATAAACAT+TGG | + | chr6.3:2962235-2962254 | None:intergenic | 25.0% |
| ! | ATCCATGAATGATATAGAAA+AGG | - | chr6.3:2963532-2963551 | MS.gene34181:CDS | 25.0% |
| ! | GAGTCATGTATTATATGTTA+GGG | - | chr6.3:2963642-2963661 | MS.gene34181:CDS | 25.0% |
| ! | GCAACAATTTACTGTAATTT+AGG | - | chr6.3:2962762-2962781 | MS.gene34181:CDS | 25.0% |
| ! | TCCATGAATGATATAGAAAA+GGG | - | chr6.3:2963533-2963552 | MS.gene34181:CDS | 25.0% |
| !! | ATGGTTTTTACAATATGATG+AGG | - | chr6.3:2962523-2962542 | MS.gene34181:CDS | 25.0% |
| !! | GTCTTTTATAATTTGAGAGT+TGG | + | chr6.3:2964352-2964371 | None:intergenic | 25.0% |
| !! | TCAATTGATTTAGCTATTGA+TGG | - | chr6.3:2962177-2962196 | MS.gene34181:CDS | 25.0% |
| AAAGTAGAAGTTTGCATAAG+AGG | - | chr6.3:2962475-2962494 | MS.gene34181:intron | 30.0% | |
| AAATTGTTGCCAATACATGA+AGG | + | chr6.3:2962752-2962771 | None:intergenic | 30.0% | |
| AAGATATACAACAATGTTCC+TGG | - | chr6.3:2963581-2963600 | MS.gene34181:CDS | 30.0% | |
| AAGATTGCTATAAACTCCTA+AGG | + | chr6.3:2963873-2963892 | None:intergenic | 30.0% | |
| AATTCTTCCATAGTTATTGC+AGG | + | chr6.3:2962039-2962058 | None:intergenic | 30.0% | |
| ACAAGAGATATGATATCTTC+GGG | - | chr6.3:2962627-2962646 | MS.gene34181:CDS | 30.0% | |
| ATGTGCAGTTTGGATTATAT+CGG | - | chr6.3:2963993-2964012 | MS.gene34181:CDS | 30.0% | |
| CAATAACTTTCTCAATAGCA+TGG | + | chr6.3:2962407-2962426 | None:intergenic | 30.0% | |
| CAGGAAATCAAAAAGATCAT+TGG | - | chr6.3:2964311-2964330 | MS.gene34181:CDS | 30.0% | |
| CTTGTTACCTTTAACAAGAA+TGG | + | chr6.3:2962612-2962631 | None:intergenic | 30.0% | |
| GAAATGTTGGAATATGTTGT+TGG | - | chr6.3:2964192-2964211 | MS.gene34181:CDS | 30.0% | |
| GAATCACTTTGAATACTTCT+TGG | + | chr6.3:2962159-2962178 | None:intergenic | 30.0% | |
| GATCAGAACAAAAAAATGCA+AGG | + | chr6.3:2963949-2963968 | None:intergenic | 30.0% | |
| GCTGATCTATACAACAAAAT+AGG | - | chr6.3:2963389-2963408 | MS.gene34181:CDS | 30.0% | |
| GGAGTCATGTATTATATGTT+AGG | - | chr6.3:2963641-2963660 | MS.gene34181:CDS | 30.0% | |
| TGTCACAACAGAAAATAAAG+AGG | - | chr6.3:2962371-2962390 | MS.gene34181:intron | 30.0% | |
| ! | ACAGTTTTCAAATCAACCAA+AGG | - | chr6.3:2963326-2963345 | MS.gene34181:CDS | 30.0% |
| ! | ACCCTTTTCTATATCATTCA+TGG | + | chr6.3:2963537-2963556 | None:intergenic | 30.0% |
| ! | TAATTTAGGACAGTACAATG+AGG | - | chr6.3:2962776-2962795 | MS.gene34181:CDS | 30.0% |
| ! | TGTTGGATATATTGGTGATT+TGG | - | chr6.3:2962332-2962351 | MS.gene34181:intron | 30.0% |
| !! | ACTATTTTGGAAAAGGAGTA+TGG | - | chr6.3:2963830-2963849 | MS.gene34181:CDS | 30.0% |
| !! | CTTTTAATTGCTGACATTTC+TGG | - | chr6.3:2964133-2964152 | MS.gene34181:CDS | 30.0% |
| !! | TTTGGATTATATCGGTTCAT+CGG | - | chr6.3:2964001-2964020 | MS.gene34181:CDS | 30.0% |
| !!! | TGCTTTAGAGCATTATGTTT+TGG | - | chr6.3:2963178-2963197 | MS.gene34181:CDS | 30.0% |
| AAGGGAACTAGAAAAGGAAA+TGG | - | chr6.3:2962504-2962523 | MS.gene34181:intron | 35.0% | |
| AATGAGAAGGGAACTAGAAA+AGG | - | chr6.3:2962498-2962517 | MS.gene34181:intron | 35.0% | |
| AATGGCTCTTGATATTCACA+AGG | - | chr6.3:2963070-2963089 | MS.gene34181:CDS | 35.0% | |
| ACAAAAACAGAAGCAACTGT+TGG | + | chr6.3:2963362-2963381 | None:intergenic | 35.0% | |
| AGGCGATGCTTATTTATCAT+TGG | - | chr6.3:2963262-2963281 | MS.gene34181:CDS | 35.0% | |
| ATCTCGACATAGTACTATCT+CGG | - | chr6.3:2963966-2963985 | MS.gene34181:CDS | 35.0% | |
| ATGGCTCTTGATATTCACAA+GGG | - | chr6.3:2963071-2963090 | MS.gene34181:CDS | 35.0% | |
| CAACAAAATAGGCAAGTTCA+AGG | - | chr6.3:2963400-2963419 | MS.gene34181:CDS | 35.0% | |
| CTTGATATTCACAAGGGAAA+CGG | - | chr6.3:2963077-2963096 | MS.gene34181:CDS | 35.0% | |
| GAGTTAGATAATCCTGATCT+TGG | - | chr6.3:2962585-2962604 | MS.gene34181:CDS | 35.0% | |
| GCAGTAAAGTTATCCTTATG+AGG | + | chr6.3:2962105-2962124 | None:intergenic | 35.0% | |
| GGAATTGCATTGAACCAAAT+GGG | - | chr6.3:2963746-2963765 | MS.gene34181:CDS | 35.0% | |
| GGATGATGCAATTGAAATGT+TGG | - | chr6.3:2964179-2964198 | MS.gene34181:CDS | 35.0% | |
| GGTCATCTTGTTGGATATAT+TGG | - | chr6.3:2962324-2962343 | MS.gene34181:intron | 35.0% | |
| TCTTGGACCATTCTTGTTAA+AGG | - | chr6.3:2962602-2962621 | MS.gene34181:CDS | 35.0% | |
| TGAAAGCTATACACCTCATA+AGG | - | chr6.3:2962089-2962108 | MS.gene34181:CDS | 35.0% | |
| TGAAGATGGTAAACCAAGTT+TGG | - | chr6.3:2962713-2962732 | MS.gene34181:CDS | 35.0% | |
| TGGAATTGCATTGAACCAAA+TGG | - | chr6.3:2963745-2963764 | MS.gene34181:CDS | 35.0% | |
| TTCTGATCAATCACCTTCAA+GGG | - | chr6.3:2962254-2962273 | MS.gene34181:intron | 35.0% | |
| TTGCATAAGAGGAATGAGAA+GGG | - | chr6.3:2962486-2962505 | MS.gene34181:intron | 35.0% | |
| TTTGCATAAGAGGAATGAGA+AGG | - | chr6.3:2962485-2962504 | MS.gene34181:intron | 35.0% | |
| ! | AATTGTAATGACTTGCAGAG+TGG | - | chr6.3:2964158-2964177 | MS.gene34181:CDS | 35.0% |
| ! | ATATGATGAGGAAGCATAAG+AGG | - | chr6.3:2962535-2962554 | MS.gene34181:CDS | 35.0% |
| ! | ATCGAGGATTGATTCAGAAT+TGG | - | chr6.3:2962302-2962321 | MS.gene34181:intron | 35.0% |
| ! | CCAAACAAGGCTCTTAATTT+TGG | - | chr6.3:2962657-2962676 | MS.gene34181:CDS | 35.0% |
| ! | CTATAAACTCCTAAGGTATC+TGG | + | chr6.3:2963866-2963885 | None:intergenic | 35.0% |
| ! | TCGAGGATTGATTCAGAATT+GGG | - | chr6.3:2962303-2962322 | MS.gene34181:intron | 35.0% |
| ! | TCTCTACTGTTTTATACAGC+AGG | - | chr6.3:2962927-2962946 | MS.gene34181:CDS | 35.0% |
| ! | TCTCTAGAAGAGATTGCAAA+TGG | - | chr6.3:2963482-2963501 | MS.gene34181:CDS | 35.0% |
| ! | TGGTAAACCAAGTTTGGAAT+TGG | - | chr6.3:2962719-2962738 | MS.gene34181:CDS | 35.0% |
| ! | TTATTGTTTCTTCGAGCACA+AGG | - | chr6.3:2962421-2962440 | MS.gene34181:intron | 35.0% |
| !! | ATTTTCGGGAAGAAAAAACC+AGG | - | chr6.3:2963455-2963474 | MS.gene34181:CDS | 35.0% |
| !! | CCAAAATTAAGAGCCTTGTT+TGG | + | chr6.3:2962660-2962679 | None:intergenic | 35.0% |
| !! | GAGAAAAAATCGGCTTTGTT+TGG | - | chr6.3:2963725-2963744 | MS.gene34181:CDS | 35.0% |
| !!! | AGGGCTAGTTTTTACTCATA+TGG | - | chr6.3:2962273-2962292 | MS.gene34181:intron | 35.0% |
| !!! | CAGTTGCTTCTGTTTTTGTA+AGG | - | chr6.3:2963363-2963382 | MS.gene34181:CDS | 35.0% |
| AAATTCAAGGGCAGGTCTTA+GGG | - | chr6.3:2962955-2962974 | MS.gene34181:CDS | 40.0% | |
| AACAAGAATGGTCCAAGATC+AGG | + | chr6.3:2962600-2962619 | None:intergenic | 40.0% | |
| ACAGCAGGTCTTGAAATTCA+AGG | - | chr6.3:2962942-2962961 | MS.gene34181:CDS | 40.0% | |
| AGCTAAGAAGCTGTGTCAAA+TGG | - | chr6.3:2963052-2963071 | MS.gene34181:CDS | 40.0% | |
| AGGTGACACTTATGCAATGA+TGG | - | chr6.3:2962890-2962909 | MS.gene34181:CDS | 40.0% | |
| ATGCACTAGCTAAGTTTGCA+GGG | - | chr6.3:2962856-2962875 | MS.gene34181:CDS | 40.0% | |
| CACATCACCAATTCCAAACT+TGG | + | chr6.3:2962729-2962748 | None:intergenic | 40.0% | |
| CAGCAGGTCTTGAAATTCAA+GGG | - | chr6.3:2962943-2962962 | MS.gene34181:CDS | 40.0% | |
| CCTCGTTAATAGCATACCTT+TGG | + | chr6.3:2963784-2963803 | None:intergenic | 40.0% | |
| CCTTATCATCCAGATACCTT+AGG | - | chr6.3:2963854-2963873 | MS.gene34181:CDS | 40.0% | |
| CTTATTGTGAAAACGCGCTT+CGG | - | chr6.3:2963432-2963451 | MS.gene34181:CDS | 40.0% | |
| GAGTAAAAACTAGCCCTTGA+AGG | + | chr6.3:2962270-2962289 | None:intergenic | 40.0% | |
| GCTGGAATTGAAGCACAAAT+GGG | - | chr6.3:2963620-2963639 | MS.gene34181:CDS | 40.0% | |
| GGAGTTTATAGCAATCTTGC+AGG | - | chr6.3:2963875-2963894 | MS.gene34181:CDS | 40.0% | |
| GGTGACACTTATGCAATGAT+GGG | - | chr6.3:2962891-2962910 | MS.gene34181:CDS | 40.0% | |
| GTTCTGATCAATCACCTTCA+AGG | - | chr6.3:2962253-2962272 | MS.gene34181:intron | 40.0% | |
| TCAGAATTGGGTCATCTTGT+TGG | - | chr6.3:2962315-2962334 | MS.gene34181:intron | 40.0% | |
| TCAGGAATTAGACGTTGCTT+CGG | - | chr6.3:2963226-2963245 | MS.gene34181:CDS | 40.0% | |
| TGATTTCGATGATCCTTCAC+CGG | + | chr6.3:2962448-2962467 | None:intergenic | 40.0% | |
| TGCTGGAATTGAAGCACAAA+TGG | - | chr6.3:2963619-2963638 | MS.gene34181:CDS | 40.0% | |
| TGTTGGATGATTCTCTCCTT+TGG | + | chr6.3:2963345-2963364 | None:intergenic | 40.0% | |
| TTACCTTCCCATTGCATCAT+AGG | + | chr6.3:2963903-2963922 | None:intergenic | 40.0% | |
| TTTGCAGGGTGTATGCAATT+AGG | - | chr6.3:2962870-2962889 | MS.gene34181:CDS | 40.0% | |
| ! | ATCTCTTCTAGAGAGATTCC+TGG | + | chr6.3:2963476-2963495 | None:intergenic | 40.0% |
| ! | CCAAAGGTATGCTATTAACG+AGG | - | chr6.3:2963781-2963800 | MS.gene34181:CDS | 40.0% |
| ! | CCTAAGGTATCTGGATGATA+AGG | + | chr6.3:2963857-2963876 | None:intergenic | 40.0% |
| ! | TCCGGCTTCTTTTAACAACT+CGG | + | chr6.3:2964280-2964299 | None:intergenic | 40.0% |
| !! | GGCTAGGACTATTTTGGAAA+AGG | - | chr6.3:2963823-2963842 | MS.gene34181:CDS | 40.0% |
| AATTCAAGGGCAGGTCTTAG+GGG | - | chr6.3:2962956-2962975 | MS.gene34181:CDS | 45.0% | |
| ACTCATATGGCGAAGAATCG+AGG | - | chr6.3:2962286-2962305 | MS.gene34181:intron | 45.0% | |
| AGGTCTTGAAATTCAAGGGC+AGG | - | chr6.3:2962947-2962966 | MS.gene34181:CDS | 45.0% | |
| ATGTCGACGATGAGAAACGT+AGG | - | chr6.3:2964250-2964269 | MS.gene34181:CDS | 45.0% | |
| CATGCACTAGCTAAGTTTGC+AGG | - | chr6.3:2962855-2962874 | MS.gene34181:CDS | 45.0% | |
| CTTGGACTTAGTGTACTCCT+TGG | + | chr6.3:2962141-2962160 | None:intergenic | 45.0% | |
| GAAATTCAAGGGCAGGTCTT+AGG | - | chr6.3:2962954-2962973 | MS.gene34181:CDS | 45.0% | |
| GAACCTATGATGCAATGGGA+AGG | - | chr6.3:2963897-2963916 | MS.gene34181:CDS | 45.0% | |
| GATGCAATGGGAAGGTAACA+TGG | - | chr6.3:2963905-2963924 | MS.gene34181:CDS | 45.0% | |
| GATGTTCCTGTGTTAGAGCA+TGG | - | chr6.3:2962825-2962844 | MS.gene34181:CDS | 45.0% | |
| GCAGGAACCTATGATGCAAT+GGG | - | chr6.3:2963893-2963912 | MS.gene34181:CDS | 45.0% | |
| GCCGAGTTGTTAAAAGAAGC+CGG | - | chr6.3:2964276-2964295 | MS.gene34181:CDS | 45.0% | |
| GCTTCGGTTGATTGTAGCAT+AGG | - | chr6.3:2963242-2963261 | MS.gene34181:CDS | 45.0% | |
| GGAATGAGAGAAGAGAAGCT+AGG | - | chr6.3:2964213-2964232 | MS.gene34181:CDS | 45.0% | |
| GGACTAATCTGTGACTCGAA+AGG | - | chr6.3:2963143-2963162 | MS.gene34181:CDS | 45.0% | |
| GGTCAACACAGTACTATTGC+TGG | - | chr6.3:2963602-2963621 | MS.gene34181:CDS | 45.0% | |
| GGTGATGTGCCTTCATGTAT+TGG | - | chr6.3:2962740-2962759 | MS.gene34181:CDS | 45.0% | |
| TAAAAGAAGCCGGAAGAGCA+AGG | - | chr6.3:2964286-2964305 | MS.gene34181:CDS | 45.0% | |
| TCAATCGAACGCTCGAGAAT+CGG | + | chr6.3:2962807-2962826 | None:intergenic | 45.0% | |
| TCTTGACCATGCTCTAACAC+AGG | + | chr6.3:2962834-2962853 | None:intergenic | 45.0% | |
| TGCAGGAACCTATGATGCAA+TGG | - | chr6.3:2963892-2963911 | MS.gene34181:CDS | 45.0% | |
| TGCTAGCGGCGAGAAAAAAT+CGG | - | chr6.3:2963715-2963734 | MS.gene34181:CDS | 45.0% | |
| TTCGGGTGAGAATCCAAACA+AGG | - | chr6.3:2962644-2962663 | MS.gene34181:CDS | 45.0% | |
| TTTCCTGTTCCTTGCTCTTC+CGG | + | chr6.3:2964298-2964317 | None:intergenic | 45.0% | |
| ! | AAAACGCGCTTCGGATTTTC+GGG | - | chr6.3:2963441-2963460 | MS.gene34181:CDS | 45.0% |
| ! | AAGAGGCTTGGTTTGAAGGA+CGG | - | chr6.3:2962552-2962571 | MS.gene34181:CDS | 45.0% |
| ! | ATGAGGAAGCATAAGAGGCT+TGG | - | chr6.3:2962540-2962559 | MS.gene34181:CDS | 45.0% |
| ! | CGAAGAGGCTAGGACTATTT+TGG | - | chr6.3:2963817-2963836 | MS.gene34181:CDS | 45.0% |
| ! | GAAAACGCGCTTCGGATTTT+CGG | - | chr6.3:2963440-2963459 | MS.gene34181:CDS | 45.0% |
| ! | GCAATAGTACTGTGTTGACC+AGG | + | chr6.3:2963602-2963621 | None:intergenic | 45.0% |
| ! | GCATAAGAGGCTTGGTTTGA+AGG | - | chr6.3:2962548-2962567 | MS.gene34181:CDS | 45.0% |
| !!! | GCATTATGTTTTGGCAAGCG+TGG | - | chr6.3:2963187-2963206 | MS.gene34181:CDS | 45.0% |
| !!! | TGTTTTGGCAAGCGTGGTTA+TGG | - | chr6.3:2963193-2963212 | MS.gene34181:CDS | 45.0% |
| CAGTGCTTGAACATGTGCCT+CGG | + | chr6.3:2963021-2963040 | None:intergenic | 50.0% | |
| CGACGATGAGAAACGTAGGT+TGG | - | chr6.3:2964254-2964273 | MS.gene34181:CDS | 50.0% | |
| CGTTTCTCATCGTCGACATC+AGG | + | chr6.3:2964249-2964268 | None:intergenic | 50.0% | |
| CGTTTGAAGAAGCGGCTGAT+CGG | - | chr6.3:2963111-2963130 | MS.gene34181:CDS | 50.0% | |
| CTGCTCAACAAGCATCACCA+AGG | - | chr6.3:2962121-2962140 | MS.gene34181:CDS | 50.0% | |
| GCCTGCATCGTTTGAAGAAG+CGG | - | chr6.3:2963103-2963122 | MS.gene34181:CDS | 50.0% | |
| GGACACAAGCAAGTCCCATT+TGG | + | chr6.3:2963763-2963782 | None:intergenic | 50.0% | |
| GTCGCGAAATTTCGTGCTAG+CGG | - | chr6.3:2963701-2963720 | MS.gene34181:CDS | 50.0% | |
| GTTTCTTCGAGCACAAGGAC+CGG | - | chr6.3:2962426-2962445 | MS.gene34181:intron | 50.0% | |
| TCTCGGTCTCATGTGCAGTT+TGG | - | chr6.3:2963983-2964002 | MS.gene34181:CDS | 50.0% | |
| TGTCTCGCCAAATCGAGGAT+CGG | + | chr6.3:2962985-2963004 | None:intergenic | 50.0% | |
| TTTGGCAAGCGTGGTTATGG+CGG | - | chr6.3:2963196-2963215 | MS.gene34181:CDS | 50.0% | |
| ! | CAGACTTGTTCGAAGAGGCT+AGG | - | chr6.3:2963807-2963826 | MS.gene34181:CDS | 50.0% |
| ! | GGTTATGGCGGAAAATCGTC+AGG | - | chr6.3:2963208-2963227 | MS.gene34181:CDS | 50.0% |
| ! | TGGGACTTGCTTGTGTCCAA+AGG | - | chr6.3:2963765-2963784 | MS.gene34181:CDS | 50.0% |
| !! | CTCGATTTGGCGAGACATGT+CGG | - | chr6.3:2962988-2963007 | MS.gene34181:CDS | 50.0% |
| AAGCCGGAAGAGCAAGGAAC+AGG | - | chr6.3:2964292-2964311 | MS.gene34181:CDS | 55.0% | |
| AGCGGCTGATCGGAGATTGA+TGG | - | chr6.3:2963121-2963140 | MS.gene34181:CDS | 55.0% | |
| CGACATGTCTCGCCAAATCG+AGG | + | chr6.3:2962990-2963009 | None:intergenic | 55.0% | |
| GACATGTCGGTATGTAGCCG+AGG | - | chr6.3:2963001-2963020 | MS.gene34181:CDS | 55.0% | |
| GCCGCTTCTTCAAACGATGC+AGG | + | chr6.3:2963107-2963126 | None:intergenic | 55.0% | |
| GCGGCTGATCGGAGATTGAT+GGG | - | chr6.3:2963122-2963141 | MS.gene34181:CDS | 55.0% | |
| GGGGAAACCGATCCTCGATT+TGG | - | chr6.3:2962975-2962994 | MS.gene34181:CDS | 55.0% | |
| ! | GGCTGCAGACTTGTTCGAAG+AGG | - | chr6.3:2963802-2963821 | MS.gene34181:CDS | 55.0% |
| TCGAGCACAAGGACCGGTGA+AGG | - | chr6.3:2962432-2962451 | MS.gene34181:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 2962033 | 2964392 | 2962033 | ID=MS.gene34181 |
| chr6.3 | mRNA | 2962033 | 2964392 | 2962033 | ID=MS.gene34181.t1;Parent=MS.gene34181 |
| chr6.3 | exon | 2962507 | 2964392 | 2962507 | ID=MS.gene34181.t1.exon1;Parent=MS.gene34181.t1 |
| chr6.3 | CDS | 2962507 | 2964392 | 2962507 | ID=cds.MS.gene34181.t1;Parent=MS.gene34181.t1 |
| chr6.3 | exon | 2962033 | 2962249 | 2962033 | ID=MS.gene34181.t1.exon2;Parent=MS.gene34181.t1 |
| chr6.3 | CDS | 2962033 | 2962249 | 2962033 | ID=cds.MS.gene34181.t1;Parent=MS.gene34181.t1 |
| Gene Sequence |
| Protein sequence |
