Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052561.t1 | ABD32605.1 | 73.8 | 260 | 67 | 1 | 1 | 259 | 24 | 283 | 6.60E-93 | 350.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052561.t1 | Q2HTY2 | 73.8 | 260 | 67 | 1 | 1 | 259 | 24 | 283 | 4.8e-93 | 350.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049501 | MS.gene052561 | 0.808017 | 3.81E-50 | -1.69E-46 |
| MS.gene050237 | MS.gene052561 | 0.822996 | 1.76E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene052561 | 0.81818 | 2.24E-52 | -1.69E-46 |
| MS.gene051247 | MS.gene052561 | 0.809588 | 1.76E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene052561 | 0.804171 | 2.46E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene052561 | 0.803223 | 3.86E-49 | -1.69E-46 |
| MS.gene052459 | MS.gene052561 | 0.805049 | 1.61E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene053054 | -0.800672 | 1.29E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene053883 | 0.8261 | 3.26E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene055608 | 0.801808 | 7.56E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene055778 | 0.80696 | 6.38E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene056173 | 0.802655 | 5.06E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene05954 | 0.805321 | 1.41E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene060429 | 0.816175 | 6.33E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene060634 | -0.815187 | 1.05E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene062042 | 0.829422 | 5.19E-55 | -1.69E-46 |
| MS.gene052561 | MS.gene062043 | 0.816132 | 6.47E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene062743 | 0.817797 | 2.74E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene062821 | 0.812986 | 3.22E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene063785 | 0.812001 | 5.28E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene064944 | 0.808937 | 2.42E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene065704 | 0.807196 | 5.69E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene066105 | 0.803218 | 3.87E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene066436 | 0.804288 | 2.32E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene06705 | 0.801145 | 1.03E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene067312 | 0.809632 | 1.72E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene067932 | 0.825354 | 4.91E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene068004 | 0.800447 | 1.44E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene068108 | 0.821316 | 4.31E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene068116 | 0.805783 | 1.13E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene068924 | 0.847332 | 1.24E-59 | -1.69E-46 |
| MS.gene052561 | MS.gene068925 | 0.808526 | 2.97E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene069206 | 0.800871 | 1.18E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene069956 | 0.821424 | 4.07E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene070088 | -0.801545 | 8.56E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene070627 | 0.807274 | 5.48E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene071342 | 0.800655 | 1.30E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene071442 | 0.813662 | 2.29E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene071444 | 0.80655 | 7.79E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene072677 | 0.801929 | 7.14E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene073083 | 0.828512 | 8.63E-55 | -1.69E-46 |
| MS.gene052561 | MS.gene07394 | 0.801761 | 7.73E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene074257 | 0.800667 | 1.29E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene074320 | 0.807694 | 4.46E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene08184 | 0.804895 | 1.73E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene08365 | 0.800128 | 1.67E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene08618 | 0.816633 | 5.00E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene21200 | 0.804674 | 1.93E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene22311 | -0.813904 | 2.02E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene23105 | 0.816803 | 4.58E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene23893 | 0.800681 | 1.29E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene24445 | 0.829203 | 5.87E-55 | -1.69E-46 |
| MS.gene052561 | MS.gene27059 | 0.801748 | 7.78E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene28387 | 0.809198 | 2.13E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene29807 | 0.805373 | 1.38E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene30141 | 0.814263 | 1.68E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene30530 | 0.827109 | 1.88E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene30882 | 0.822574 | 2.20E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene31347 | 0.817208 | 3.71E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene31433 | 0.825812 | 3.82E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene31658 | 0.805068 | 1.60E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene32209 | 0.934239 | 5.49E-96 | -1.69E-46 |
| MS.gene052561 | MS.gene34085 | 0.813989 | 1.94E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene34180 | 0.832494 | 9.15E-56 | -1.69E-46 |
| MS.gene052561 | MS.gene34181 | 0.80372 | 3.05E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene34979 | 0.800019 | 1.75E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene35135 | 0.812801 | 3.53E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene35575 | 0.804159 | 2.47E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene36899 | 0.809114 | 2.22E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene38303 | 0.801534 | 8.61E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene39554 | 0.801539 | 8.59E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene40022 | 0.818836 | 1.59E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene40739 | 0.8016 | 8.34E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene41235 | 0.823678 | 1.22E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene43075 | 0.841087 | 5.88E-58 | -1.69E-46 |
| MS.gene052561 | MS.gene43886 | 0.83783 | 4.12E-57 | -1.69E-46 |
| MS.gene052561 | MS.gene44231 | 0.803205 | 3.90E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene44451 | 0.813311 | 2.73E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene49718 | 0.823687 | 1.21E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene50493 | 0.803086 | 4.12E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene50990 | 0.817792 | 2.74E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene51588 | 0.812399 | 4.32E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene53586 | 0.828599 | 8.22E-55 | -1.69E-46 |
| MS.gene052561 | MS.gene55165 | -0.804236 | 2.38E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene56562 | 0.802222 | 6.22E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene58992 | 0.828036 | 1.12E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene59310 | 0.803178 | 3.95E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene59506 | 0.82016 | 7.94E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene59901 | 0.820431 | 6.88E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene60710 | 0.802808 | 4.71E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene61075 | -0.82616 | 3.16E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene62687 | -0.823355 | 1.45E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene64249 | 0.839464 | 1.56E-57 | -1.69E-46 |
| MS.gene052561 | MS.gene66280 | 0.823191 | 1.58E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene66625 | 0.82107 | 4.91E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene67486 | 0.81376 | 2.17E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene67738 | 0.803724 | 3.04E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene68824 | 0.807411 | 5.12E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene68826 | 0.802576 | 5.25E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene68999 | 0.800768 | 1.23E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene69257 | 0.802492 | 5.47E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene70169 | 0.819644 | 1.04E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene71534 | 0.800301 | 1.54E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene71830 | -0.81358 | 2.38E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene72268 | 0.835662 | 1.47E-56 | -1.69E-46 |
| MS.gene052561 | MS.gene72400 | 0.805605 | 1.23E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene72557 | 0.806024 | 1.01E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene73332 | 0.801629 | 8.23E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene73663 | 0.84043 | 8.74E-58 | -1.69E-46 |
| MS.gene052561 | MS.gene74532 | 0.80417 | 2.46E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene76035 | 0.808153 | 3.56E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene76305 | -0.829504 | 4.96E-55 | -1.69E-46 |
| MS.gene052561 | MS.gene76734 | 0.809817 | 1.57E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene77188 | 0.807965 | 3.91E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene77370 | 0.859899 | 3.01E-63 | -1.69E-46 |
| MS.gene052561 | MS.gene79960 | 0.8345 | 2.89E-56 | -1.69E-46 |
| MS.gene052561 | MS.gene80853 | 0.809645 | 1.71E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene80895 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene81370 | 0.806184 | 9.31E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene81678 | 0.82863 | 8.08E-55 | -1.69E-46 |
| MS.gene052561 | MS.gene84847 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene052561 | MS.gene84994 | 0.825912 | 3.62E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene86086 | 0.806562 | 7.75E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene88243 | 0.812346 | 4.44E-51 | -1.69E-46 |
| MS.gene052561 | MS.gene88437 | -0.819826 | 9.47E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene89096 | 0.802282 | 6.04E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene89671 | 0.8222 | 2.69E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene90610 | 0.816405 | 5.62E-52 | -1.69E-46 |
| MS.gene052561 | MS.gene92040 | 0.803285 | 3.75E-49 | -1.69E-46 |
| MS.gene052561 | MS.gene94683 | 0.824165 | 9.36E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene95624 | 0.824327 | 8.57E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene98394 | 0.824635 | 7.25E-54 | -1.69E-46 |
| MS.gene052561 | MS.gene98395 | 0.820718 | 5.91E-53 | -1.69E-46 |
| MS.gene052561 | MS.gene99657 | 0.807578 | 4.72E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052561.t1 | MTR_4g091220 | 92.692 | 260 | 18 | 1 | 1 | 259 | 24 | 283 | 1.72e-132 | 375 |
| MS.gene052561.t1 | MTR_4g091220 | 92.913 | 254 | 17 | 1 | 1 | 253 | 24 | 277 | 1.50e-127 | 363 |
| MS.gene052561.t1 | MTR_2g011760 | 52.330 | 279 | 92 | 9 | 1 | 259 | 1 | 258 | 1.31e-73 | 225 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene052561.t1 | AT4G21500 | 34.413 | 247 | 105 | 8 | 17 | 246 | 9 | 215 | 2.07e-14 | 70.5 |
Find 48 sgRNAs with CRISPR-Local
Find 60 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTTCTCTTCTCCACATT+TGG | 0.202266 | 4.3:+22806711 | None:intergenic |
| AAAACAAGAAAACTGGAATA+TGG | 0.269894 | 4.3:-22806500 | MS.gene052561:CDS |
| TCAATTTCCTTTGGTTCAAC+TGG | 0.327808 | 4.3:+22806676 | None:intergenic |
| GGTGAATTCCGAAAAGAGTT+TGG | 0.330170 | 4.3:-22806620 | MS.gene052561:CDS |
| CTCGTCGGAGGATGAGTTTC+CGG | 0.351454 | 4.3:-22806422 | MS.gene052561:CDS |
| CAAGATGATGAAGAGGGATT+TGG | 0.357467 | 4.3:-22806320 | MS.gene052561:CDS |
| TTGATTGAGATAGCTTTAGA+TGG | 0.357877 | 4.3:-22806346 | MS.gene052561:CDS |
| TCTAGAGACTCAATTTCCTT+TGG | 0.372592 | 4.3:+22806667 | None:intergenic |
| CACTGGAGAGAAAACTATCT+TGG | 0.409754 | 4.3:+22806861 | None:intergenic |
| GAGCTATCCGAATCAGATTC+CGG | 0.439128 | 4.3:+22806442 | None:intergenic |
| AGTTTCCGGCGAAAGAGGAT+TGG | 0.443586 | 4.3:-22806408 | MS.gene052561:CDS |
| GGATGAGTTTCCGGCGAAAG+AGG | 0.443918 | 4.3:-22806413 | MS.gene052561:CDS |
| GGGAAGAAGAAGACAGAGAA+GGG | 0.445414 | 4.3:-22806369 | MS.gene052561:CDS |
| AAACAAGAAAACTGGAATAT+GGG | 0.452373 | 4.3:-22806499 | MS.gene052561:CDS |
| AAAATATCATCATGAACAAA+AGG | 0.457722 | 4.3:-22806785 | MS.gene052561:CDS |
| GTTTCCGGCGAAAGAGGATT+GGG | 0.460419 | 4.3:-22806407 | MS.gene052561:CDS |
| AGAAAAGATGAGGTAAATAG+AGG | 0.464575 | 4.3:+22806884 | None:intergenic |
| CTCCAGTGCTTATTCTCACC+GGG | 0.467412 | 4.3:-22806846 | MS.gene052561:CDS |
| TGGAAGCAAGATGATGAAGA+GGG | 0.469934 | 4.3:-22806326 | MS.gene052561:CDS |
| TCTCCAGTGCTTATTCTCAC+CGG | 0.472662 | 4.3:-22806847 | MS.gene052561:CDS |
| TTCGTTGTCACGATACTATC+CGG | 0.478563 | 4.3:-22806461 | MS.gene052561:CDS |
| GAGGAAAATCAAGGTGCAAA+AGG | 0.482289 | 4.3:+22806903 | None:intergenic |
| TTGGGACTCGCCGGAGGAGT+GGG | 0.488949 | 4.3:-22806389 | MS.gene052561:CDS |
| ATACTATCCGGAATCTGATT+CGG | 0.492058 | 4.3:-22806449 | MS.gene052561:CDS |
| ATGGAACGTGAGAGCACCAT+TGG | 0.500437 | 4.3:-22806575 | MS.gene052561:CDS |
| GAAAACAAAGCAACCAAATG+TGG | 0.507750 | 4.3:-22806724 | MS.gene052561:CDS |
| ATTGGGACTCGCCGGAGGAG+TGG | 0.510971 | 4.3:-22806390 | MS.gene052561:CDS |
| TCTTCGTATATTACCTCCAA+TGG | 0.512351 | 4.3:+22806559 | None:intergenic |
| TCTTCTTCTTCCCACTCCTC+CGG | 0.516810 | 4.3:+22806379 | None:intergenic |
| TGGGAAGAAGAAGACAGAGA+AGG | 0.524332 | 4.3:-22806370 | MS.gene052561:CDS |
| ATGGAAGCAAGATGATGAAG+AGG | 0.528161 | 4.3:-22806327 | MS.gene052561:CDS |
| TTGCTCACAATCCTCCGTCT+CGG | 0.556266 | 4.3:-22806817 | MS.gene052561:CDS |
| ATCCCGGTGAGAATAAGCAC+TGG | 0.563079 | 4.3:+22806844 | None:intergenic |
| ATCTGATTCGGATAGCTCGT+CGG | 0.574190 | 4.3:-22806437 | MS.gene052561:CDS |
| GATTGTGAGCAAGAGAATCC+CGG | 0.574606 | 4.3:+22806828 | None:intergenic |
| GAACGTGAGAGCACCATTGG+AGG | 0.580318 | 4.3:-22806572 | MS.gene052561:CDS |
| GAGTCCCAATCCTCTTTCGC+CGG | 0.581065 | 4.3:+22806403 | None:intergenic |
| AACATGTCCAGTTGAACCAA+AGG | 0.581805 | 4.3:-22806683 | MS.gene052561:CDS |
| GAAAGAGGATTGGGACTCGC+CGG | 0.585561 | 4.3:-22806398 | MS.gene052561:CDS |
| AGGTAAATAGAGGAAAATCA+AGG | 0.599703 | 4.3:+22806894 | None:intergenic |
| AGAGGATTGGGACTCGCCGG+AGG | 0.612220 | 4.3:-22806395 | MS.gene052561:CDS |
| TTTGATTTGCTCCGAGACGG+AGG | 0.615406 | 4.3:+22806806 | None:intergenic |
| TTAGTTGCACCTAATCTCAC+CGG | 0.625690 | 4.3:+22806231 | None:intergenic |
| ACTATCTTGGAGAAAAGATG+AGG | 0.649524 | 4.3:+22806874 | None:intergenic |
| GAAAACTCTTTGTACCTCGT+CGG | 0.660934 | 4.3:+22806253 | None:intergenic |
| TGATTCGGATAGCTCGTCGG+AGG | 0.685465 | 4.3:-22806434 | MS.gene052561:CDS |
| GTGACAATGCACGAAAACAG+AGG | 0.690366 | 4.3:+22806925 | None:intergenic |
| AGATTGATATTTCTCCGACG+AGG | 0.710192 | 4.3:-22806267 | MS.gene052561:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATCATCATGAACAAA+AGG | - | chr4.3:22806434-22806453 | MS.gene052561:CDS | 20.0% |
| !! | ATATGAAGATGAAGAAAAAT+TGG | - | chr4.3:22806683-22806702 | MS.gene052561:CDS | 20.0% |
| !!! | AGATTTTGAAATAGATGAAA+TGG | + | chr4.3:22806256-22806275 | None:intergenic | 20.0% |
| ! | AAAACAAGAAAACTGGAATA+TGG | - | chr4.3:22806719-22806738 | MS.gene052561:CDS | 25.0% |
| ! | AAACAAGAAAACTGGAATAT+GGG | - | chr4.3:22806720-22806739 | MS.gene052561:CDS | 25.0% |
| ! | CAAATGAAAAACAAGAAAAC+TGG | - | chr4.3:22806712-22806731 | MS.gene052561:CDS | 25.0% |
| !!! | CAGTTTTCTTGTTTTTCATT+TGG | + | chr4.3:22806714-22806733 | None:intergenic | 25.0% |
| AGAAAAGATGAGGTAAATAG+AGG | + | chr4.3:22806338-22806357 | None:intergenic | 30.0% | |
| AGGTAAATAGAGGAAAATCA+AGG | + | chr4.3:22806328-22806347 | None:intergenic | 30.0% | |
| ! | ACTTGATTCCAAACTCTTTT+CGG | + | chr4.3:22806610-22806629 | None:intergenic | 30.0% |
| !! | TTGATTGAGATAGCTTTAGA+TGG | - | chr4.3:22806873-22806892 | MS.gene052561:CDS | 30.0% |
| ACTATCTTGGAGAAAAGATG+AGG | + | chr4.3:22806348-22806367 | None:intergenic | 35.0% | |
| ATACTATCCGGAATCTGATT+CGG | - | chr4.3:22806770-22806789 | MS.gene052561:CDS | 35.0% | |
| GAAAACAAAGCAACCAAATG+TGG | - | chr4.3:22806495-22806514 | MS.gene052561:CDS | 35.0% | |
| TCTAGAGACTCAATTTCCTT+TGG | + | chr4.3:22806555-22806574 | None:intergenic | 35.0% | |
| TCTTCGTATATTACCTCCAA+TGG | + | chr4.3:22806663-22806682 | None:intergenic | 35.0% | |
| ! | GTTTTCTTCTTTAGCGATGA+TGG | + | chr4.3:22806481-22806500 | None:intergenic | 35.0% |
| ! | TCAATTTCCTTTGGTTCAAC+TGG | + | chr4.3:22806546-22806565 | None:intergenic | 35.0% |
| !!! | ATTTTTGATTTGCTCCGAGA+CGG | + | chr4.3:22806419-22806438 | None:intergenic | 35.0% |
| AACATGTCCAGTTGAACCAA+AGG | - | chr4.3:22806536-22806555 | MS.gene052561:CDS | 40.0% | |
| AGATTGATATTTCTCCGACG+AGG | - | chr4.3:22806952-22806971 | MS.gene052561:CDS | 40.0% | |
| AGTGCACTGTTCAGAAAAAG+AGG | - | chr4.3:22806578-22806597 | MS.gene052561:CDS | 40.0% | |
| ATGGAAGCAAGATGATGAAG+AGG | - | chr4.3:22806892-22806911 | MS.gene052561:CDS | 40.0% | |
| CAAGATGATGAAGAGGGATT+TGG | - | chr4.3:22806899-22806918 | MS.gene052561:CDS | 40.0% | |
| CACTGGAGAGAAAACTATCT+TGG | + | chr4.3:22806361-22806380 | None:intergenic | 40.0% | |
| GAAAACTCTTTGTACCTCGT+CGG | + | chr4.3:22806969-22806988 | None:intergenic | 40.0% | |
| GAGGAAAATCAAGGTGCAAA+AGG | + | chr4.3:22806319-22806338 | None:intergenic | 40.0% | |
| GGTGAATTCCGAAAAGAGTT+TGG | - | chr4.3:22806599-22806618 | MS.gene052561:CDS | 40.0% | |
| TGGAAGCAAGATGATGAAGA+GGG | - | chr4.3:22806893-22806912 | MS.gene052561:CDS | 40.0% | |
| TTAGTTGCACCTAATCTCAC+CGG | + | chr4.3:22806991-22807010 | None:intergenic | 40.0% | |
| TTCGTTGTCACGATACTATC+CGG | - | chr4.3:22806758-22806777 | MS.gene052561:CDS | 40.0% | |
| ! | AAGAGTTTTCCGGTGAGATT+AGG | - | chr4.3:22806979-22806998 | MS.gene052561:CDS | 40.0% |
| ! | ACGAGGTACAAAGAGTTTTC+CGG | - | chr4.3:22806969-22806988 | MS.gene052561:CDS | 40.0% |
| ! | CTGTTTCTCTTCTCCACATT+TGG | + | chr4.3:22806511-22806530 | None:intergenic | 40.0% |
| !! | CAAGTTCGAGTTTTGTGGAA+TGG | - | chr4.3:22806625-22806644 | MS.gene052561:CDS | 40.0% |
| !! | GGAATCAAGTTCGAGTTTTG+TGG | - | chr4.3:22806620-22806639 | MS.gene052561:CDS | 40.0% |
| GAGCTATCCGAATCAGATTC+CGG | + | chr4.3:22806780-22806799 | None:intergenic | 45.0% | |
| GATTGTGAGCAAGAGAATCC+CGG | + | chr4.3:22806394-22806413 | None:intergenic | 45.0% | |
| GGGAAGAAGAAGACAGAGAA+GGG | - | chr4.3:22806850-22806869 | MS.gene052561:CDS | 45.0% | |
| GTGACAATGCACGAAAACAG+AGG | + | chr4.3:22806297-22806316 | None:intergenic | 45.0% | |
| TCTCCAGTGCTTATTCTCAC+CGG | - | chr4.3:22806372-22806391 | MS.gene052561:CDS | 45.0% | |
| TGGGAAGAAGAAGACAGAGA+AGG | - | chr4.3:22806849-22806868 | MS.gene052561:CDS | 45.0% | |
| !! | ATCTGATTCGGATAGCTCGT+CGG | - | chr4.3:22806782-22806801 | MS.gene052561:CDS | 45.0% |
| AGTTTCCGGCGAAAGAGGAT+TGG | - | chr4.3:22806811-22806830 | MS.gene052561:CDS | 50.0% | |
| ATCCCGGTGAGAATAAGCAC+TGG | + | chr4.3:22806378-22806397 | None:intergenic | 50.0% | |
| CTCCAGTGCTTATTCTCACC+GGG | - | chr4.3:22806373-22806392 | MS.gene052561:CDS | 50.0% | |
| GTTTCCGGCGAAAGAGGATT+GGG | - | chr4.3:22806812-22806831 | MS.gene052561:CDS | 50.0% | |
| TCTTCTTCTTCCCACTCCTC+CGG | + | chr4.3:22806843-22806862 | None:intergenic | 50.0% | |
| TTGCTCACAATCCTCCGTCT+CGG | - | chr4.3:22806402-22806421 | MS.gene052561:CDS | 50.0% | |
| !! | ATGGAACGTGAGAGCACCAT+TGG | - | chr4.3:22806644-22806663 | MS.gene052561:CDS | 50.0% |
| !! | TTTGATTTGCTCCGAGACGG+AGG | + | chr4.3:22806416-22806435 | None:intergenic | 50.0% |
| CTCGTCGGAGGATGAGTTTC+CGG | - | chr4.3:22806797-22806816 | MS.gene052561:CDS | 55.0% | |
| GAAAGAGGATTGGGACTCGC+CGG | - | chr4.3:22806821-22806840 | MS.gene052561:CDS | 55.0% | |
| GAGTCCCAATCCTCTTTCGC+CGG | + | chr4.3:22806819-22806838 | None:intergenic | 55.0% | |
| GGATGAGTTTCCGGCGAAAG+AGG | - | chr4.3:22806806-22806825 | MS.gene052561:CDS | 55.0% | |
| ! | TGATTCGGATAGCTCGTCGG+AGG | - | chr4.3:22806785-22806804 | MS.gene052561:CDS | 55.0% |
| !! | GAACGTGAGAGCACCATTGG+AGG | - | chr4.3:22806647-22806666 | MS.gene052561:CDS | 55.0% |
| AGAGGATTGGGACTCGCCGG+AGG | - | chr4.3:22806824-22806843 | MS.gene052561:CDS | 65.0% | |
| ATTGGGACTCGCCGGAGGAG+TGG | - | chr4.3:22806829-22806848 | MS.gene052561:CDS | 65.0% | |
| TTGGGACTCGCCGGAGGAGT+GGG | - | chr4.3:22806830-22806849 | MS.gene052561:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 22806231 | 22807010 | 22806231 | ID=MS.gene052561 |
| chr4.3 | mRNA | 22806231 | 22807010 | 22806231 | ID=MS.gene052561.t1;Parent=MS.gene052561 |
| chr4.3 | exon | 22806231 | 22807010 | 22806231 | ID=MS.gene052561.t1.exon1;Parent=MS.gene052561.t1 |
| chr4.3 | CDS | 22806231 | 22807010 | 22806231 | ID=cds.MS.gene052561.t1;Parent=MS.gene052561.t1 |
| Gene Sequence |
| Protein sequence |
