AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene052136


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052136.t1 MTR_8g100135 41.206 398 188 6 14 365 7 404 1.15e-94 291
MS.gene052136.t1 MTR_8g100135 44.126 349 174 5 14 341 7 355 8.33e-92 281
MS.gene052136.t1 MTR_8g089190 32.626 377 201 11 35 365 1 370 9.92e-55 186
MS.gene052136.t1 MTR_8g089190 34.356 326 186 9 35 339 1 319 2.98e-54 182
MS.gene052136.t1 MTR_5g092150 29.111 371 222 5 35 365 29 398 5.86e-51 177
MS.gene052136.t1 MTR_3g467140 29.750 400 228 10 13 365 9 402 1.46e-48 171
MS.gene052136.t1 MTR_3g467130 30.159 378 211 8 34 365 32 402 4.49e-48 169
MS.gene052136.t1 MTR_5g091760 31.034 377 211 10 32 365 35 405 1.69e-45 162
MS.gene052136.t1 MTR_7g033040 27.340 406 242 10 1 363 1 396 9.37e-36 136
MS.gene052136.t1 MTR_5g020020 27.114 402 235 12 10 363 11 402 1.81e-35 135
MS.gene052136.t1 MTR_8g072260 26.601 406 243 13 2 365 1 393 3.80e-34 131
MS.gene052136.t1 MTR_8g072260 26.601 406 243 13 2 365 1 393 5.90e-34 131
MS.gene052136.t1 MTR_8g072260 26.601 406 243 13 2 365 1 393 5.94e-34 130
MS.gene052136.t1 MTR_8g077810 26.142 394 239 12 15 363 13 399 2.15e-31 124
MS.gene052136.t1 MTR_5g025610 27.518 407 236 15 2 365 1 391 1.22e-30 120
MS.gene052136.t1 MTR_5g025610 27.094 406 239 14 2 365 1 391 1.52e-30 121
MS.gene052136.t1 MTR_5g025610 27.094 406 239 14 2 365 1 391 2.23e-30 121
MS.gene052136.t1 MTR_5g010750 23.585 318 229 6 35 340 31 346 1.08e-27 113
MS.gene052136.t1 MTR_5g010750 23.585 318 229 6 35 340 31 346 1.96e-27 113
MS.gene052136.t1 MTR_3g070380 26.866 335 212 13 26 340 20 341 5.40e-27 112
MS.gene052136.t1 MTR_5g021220 23.214 392 240 10 28 363 28 414 2.51e-26 110
MS.gene052136.t1 MTR_8g076510 22.432 370 239 10 36 363 40 403 1.44e-25 107
MS.gene052136.t1 MTR_3g467140 28.467 274 147 7 136 365 1 269 2.38e-25 105
MS.gene052136.t1 MTR_6g015910 26.765 340 198 10 28 340 26 341 7.48e-25 105
MS.gene052136.t1 MTR_5g082520 25.231 325 220 9 31 340 24 340 1.71e-24 104
MS.gene052136.t1 MTR_5g014250 23.913 414 254 11 7 365 10 417 7.33e-24 102
MS.gene052136.t1 MTR_8g016180 23.955 359 240 11 5 340 3 351 1.72e-23 100
MS.gene052136.t1 MTR_8g016180 24.929 353 244 11 5 340 3 351 3.05e-23 100
MS.gene052136.t1 MTR_3g007320 26.113 337 204 10 28 340 26 341 4.72e-23 100
MS.gene052136.t1 MTR_3g112120 23.454 388 231 11 31 365 37 411 1.58e-21 95.9
MS.gene052136.t1 MTR_6g069000 21.552 348 246 9 13 340 11 351 3.02e-20 92.0
MS.gene052136.t1 MTR_6g069000 21.552 348 246 9 13 340 21 361 3.03e-20 92.0
MS.gene052136.t1 MTR_1g037580 23.426 397 248 11 13 365 20 404 9.52e-19 87.8
MS.gene052136.t1 MTR_6g034940 22.738 409 243 12 13 365 18 409 1.52e-18 87.0
MS.gene052136.t1 MTR_4g086130 23.056 373 244 10 30 365 30 396 4.46e-18 85.5
MS.gene052136.t1 MTR_2g031930 22.775 382 248 9 28 365 38 416 1.68e-17 84.0
MS.gene052136.t1 MTR_2g031930 22.775 382 248 9 28 365 34 412 2.05e-17 83.6
MS.gene052136.t1 MTR_2g031920 23.822 382 240 10 31 365 37 414 3.90e-17 82.8
MS.gene052136.t1 MTR_8g076940 21.833 371 236 8 38 363 49 410 4.53e-17 82.4
MS.gene052136.t1 MTR_8g076940 21.833 371 236 8 38 363 49 410 5.21e-17 82.4
MS.gene052136.t1 MTR_8g089800 22.141 411 265 12 8 365 8 416 5.93e-17 82.4
MS.gene052136.t1 MTR_8g076940 22.093 344 238 7 38 360 49 383 8.56e-17 81.3
MS.gene052136.t1 MTR_8g076940 21.981 323 223 6 38 340 49 362 1.75e-16 80.5
MS.gene052136.t1 MTR_4g086040 21.774 372 246 10 32 365 35 399 2.40e-16 80.5
MS.gene052136.t1 MTR_0045s0080 25.594 379 211 15 35 363 40 397 2.48e-15 77.0
MS.gene052136.t1 MTR_1g032950 21.739 391 266 9 13 365 13 401 3.30e-15 77.0
MS.gene052136.t1 MTR_8g012970 22.518 413 250 13 12 365 12 413 2.98e-14 74.3
MS.gene052136.t1 MTR_5g020020 26.316 247 130 8 162 363 89 328 8.63e-14 72.4
MS.gene052136.t1 MTR_5g014240 22.169 415 259 12 7 365 10 416 1.24e-13 72.4
MS.gene052136.t1 MTR_3g051230 30.769 169 95 6 14 175 1 154 1.72e-13 68.2
MS.gene052136.t1 MTR_1g032980 22.531 324 224 8 28 328 7 326 4.11e-13 70.5
MS.gene052136.t1 MTR_0045s0060 23.750 320 226 9 35 340 40 355 2.05e-12 68.6
MS.gene052136.t1 MTR_4g005230 22.835 381 248 10 27 365 35 411 2.24e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene052136.t1 AT5G36110 38.919 370 188 4 34 365 33 402 3.65e-81 256
MS.gene052136.t1 AT5G36110 40.964 332 183 3 34 352 33 364 2.93e-78 245
MS.gene052136.t1 AT5G36140 36.949 295 175 2 20 303 17 311 1.18e-64 208
MS.gene052136.t1 AT5G45340 29.104 402 235 10 2 365 1 390 8.34e-45 160
MS.gene052136.t1 AT5G45340 29.104 402 235 10 2 365 1 390 9.85e-45 160
MS.gene052136.t1 AT4G19230 28.608 395 227 11 14 365 8 390 7.64e-41 150
MS.gene052136.t1 AT4G19230 28.608 395 227 11 14 365 8 390 1.38e-40 149
MS.gene052136.t1 AT2G42850 26.753 385 233 9 23 365 34 411 1.40e-32 127
MS.gene052136.t1 AT5G14400 27.089 347 225 9 40 363 1 342 7.06e-32 124
MS.gene052136.t1 AT5G14400 27.089 347 225 9 40 363 1 342 1.31e-31 124
MS.gene052136.t1 AT2G42850 27.893 337 219 8 22 341 33 362 1.47e-29 117
MS.gene052136.t1 AT1G12740 23.899 318 228 5 35 340 31 346 2.94e-29 116
MS.gene052136.t1 AT1G12740 22.554 368 246 7 35 365 31 396 1.33e-28 116
MS.gene052136.t1 AT1G12740 23.899 318 228 5 35 340 31 346 1.42e-28 116
MS.gene052136.t1 AT5G14400 26.748 329 218 8 40 350 1 324 1.47e-28 114
MS.gene052136.t1 AT3G50660 26.879 346 213 9 32 340 36 378 5.75e-28 114
MS.gene052136.t1 AT3G50660 26.879 346 213 9 32 340 36 378 1.22e-27 114
MS.gene052136.t1 AT4G36380 24.119 369 239 6 35 363 69 436 5.10e-27 112
MS.gene052136.t1 AT1G73340 25.373 335 233 5 16 340 24 351 7.69e-27 111
MS.gene052136.t1 AT1G12740 21.925 374 247 8 35 365 31 402 4.61e-26 108
MS.gene052136.t1 AT4G36380 24.922 321 225 4 35 340 69 388 9.23e-26 107
MS.gene052136.t1 AT2G29090 23.219 379 238 10 29 365 43 410 2.57e-25 107
MS.gene052136.t1 AT2G29090 23.219 379 238 10 29 365 43 410 2.57e-25 107
MS.gene052136.t1 AT1G19630 22.162 370 245 8 34 363 34 400 9.76e-24 102
MS.gene052136.t1 AT1G19630 22.162 370 245 8 34 363 34 400 1.15e-23 102
MS.gene052136.t1 AT1G19630 22.162 370 245 8 34 363 34 400 1.63e-23 101
MS.gene052136.t1 AT3G19270 23.940 401 251 11 7 365 6 394 3.95e-23 100
MS.gene052136.t1 AT3G19270 23.940 401 251 11 7 365 6 394 4.04e-23 100
MS.gene052136.t1 AT3G30180 24.859 354 230 11 9 340 3 342 7.01e-23 99.8
MS.gene052136.t1 AT5G05690 23.433 367 241 9 33 363 29 391 1.56e-22 98.2
MS.gene052136.t1 AT5G05690 23.433 367 241 9 33 363 29 391 3.57e-22 97.8
MS.gene052136.t1 AT3G13730 24.149 323 223 9 36 340 52 370 2.96e-21 95.1
MS.gene052136.t1 AT3G13730 24.149 323 223 9 36 340 52 370 3.30e-21 95.1
MS.gene052136.t1 AT2G32440 23.961 409 246 14 13 365 15 414 3.43e-20 92.0
MS.gene052136.t1 AT2G32440 23.961 409 246 14 13 365 15 414 3.43e-20 92.0
MS.gene052136.t1 AT4G15393 26.646 319 214 10 35 340 35 346 5.70e-20 90.9
MS.gene052136.t1 AT4G15393 26.646 319 214 10 35 340 35 346 8.23e-20 90.9
MS.gene052136.t1 AT4G15300 27.469 324 204 10 35 339 25 336 9.30e-20 90.9
MS.gene052136.t1 AT4G15300 27.469 324 204 10 35 339 35 346 9.97e-20 90.5
MS.gene052136.t1 AT4G15396 27.778 324 206 11 35 340 35 348 3.38e-19 88.6
MS.gene052136.t1 AT4G15396 27.778 324 206 11 35 340 35 348 5.53e-19 88.2
MS.gene052136.t1 AT4G15396 27.778 324 206 11 35 340 35 348 6.03e-19 88.2
MS.gene052136.t1 AT5G38970 25.140 358 229 12 7 342 4 344 7.10e-19 87.8
MS.gene052136.t1 AT4G15396 27.778 324 206 11 35 340 35 348 9.02e-19 87.8
MS.gene052136.t1 AT5G38970 25.140 358 229 12 7 342 4 344 1.17e-18 87.4
MS.gene052136.t1 AT2G29090 21.799 289 199 7 29 301 43 320 3.16e-17 82.4
MS.gene052136.t1 AT1G05160 22.751 378 239 11 35 365 45 416 8.29e-17 82.0
MS.gene052136.t1 AT1G05160 22.751 378 239 11 35 365 45 416 8.29e-17 82.0
MS.gene052136.t1 AT1G65670 25.978 358 232 12 1 340 1 343 1.62e-16 81.3
MS.gene052136.t1 AT4G15300 26.393 341 208 11 35 339 25 358 1.68e-16 81.3
MS.gene052136.t1 AT3G44970 23.545 378 228 12 35 363 35 400 8.56e-15 75.9
MS.gene052136.t1 AT1G78490 25.526 380 218 16 35 363 35 400 1.48e-14 74.7
MS.gene052136.t1 AT1G78490 25.526 380 218 16 35 363 35 400 2.35e-14 74.7
MS.gene052136.t1 AT4G15310 24.581 358 247 10 7 347 6 357 3.18e-13 71.2
MS.gene052136.t1 AT3G44970 24.138 319 206 10 35 329 35 341 2.18e-12 68.2

Find 61 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAATTACTTGCCAAATA+TGG 0.212343 4.3:-12176589 MS.gene052136:CDS
CTTTCCAATGTGTGTTTATA+TGG 0.264138 4.3:+12176550 None:intergenic
AAGTAATTTCTAAGTGTTTC+TGG 0.266492 4.3:+12176600 None:intergenic
TGAGCAATTCTATCCATATT+TGG 0.268527 4.3:+12176576 None:intergenic
GAAAGGTTTGTTACATGAAT+AGG 0.281392 4.3:+12175693 None:intergenic
TGAAGAAAAGAAAGTGGATT+TGG 0.295995 4.3:-12175551 MS.gene052136:CDS
AAGGTTGTCTCTTGTTAATA+AGG 0.311020 4.3:-12176673 MS.gene052136:CDS
GGAAATCCTAAGGTTCCTTT+AGG 0.319592 4.3:+12176918 None:intergenic
TAACAAGTAAATGTGATAAA+AGG 0.325476 4.3:+12175500 None:intergenic
GCCTTATGAAACCTTGTTCC+AGG 0.328634 4.3:+12175618 None:intergenic
ACCTTAGGATTTCCATTTGT+TGG 0.331369 4.3:-12176909 MS.gene052136:CDS
TGAAAGCTACAAATGAAATA+AGG 0.357447 4.3:-12175593 MS.gene052136:CDS
GGCTTCGCAATCAACTTTCC+TGG 0.366680 4.3:-12175636 MS.gene052136:CDS
AATGTGTATAGCTGTATTAT+AGG 0.370831 4.3:+12175753 None:intergenic
ATCTTGAGGGAAAGCAAATA+AGG 0.372337 4.3:-12176860 MS.gene052136:CDS
TCATTGGTTATGAAGTATCT+TGG 0.378005 4.3:-12175378 MS.gene052136:CDS
AAAGGTTTGTTACATGAATA+GGG 0.384152 4.3:+12175694 None:intergenic
GAATTTCTAAAAGGGATCAT+TGG 0.400489 4.3:-12175657 MS.gene052136:CDS
TCAAAGGTTTCTCCAACAAA+TGG 0.410321 4.3:+12176897 None:intergenic
AAAACAAGAATGTTCAAGTA+TGG 0.410480 4.3:-12176722 MS.gene052136:CDS
TCCTGGAACAAGGTTTCATA+AGG 0.411433 4.3:-12175619 MS.gene052136:CDS
AATCTTCCTAAAGGAACCTT+AGG 0.418148 4.3:-12176924 MS.gene052136:CDS
TCCAGAAAATGAAATACTCT+TGG 0.427830 4.3:-12175045 MS.gene052136:CDS
TTCTAGATCAGTACTATCAT+TGG 0.439525 4.3:-12175394 MS.gene052136:CDS
ACTCCCCTGCCTCTTTCCCT+TGG 0.450901 4.3:+12175086 None:intergenic
TTTCTAAAAGCTAATCTTGA+GGG 0.459062 4.3:-12176873 MS.gene052136:CDS
ATGAAGCAAAAGCAACTAGA+AGG 0.475495 4.3:-12176644 MS.gene052136:CDS
TCAGGATTTGAAAACAGTGT+TGG 0.475875 4.3:+12174749 None:intergenic
TGAAATTAGCCAAGGGAAAG+AGG 0.480337 4.3:-12175095 MS.gene052136:CDS
CAATCAACTTTCCTGGAACA+AGG 0.481445 4.3:-12175629 MS.gene052136:CDS
TTGTCTCTTGTTAATAAGGT+TGG 0.485068 4.3:-12176669 MS.gene052136:CDS
AGTGGATTTGGATGAAAAGA+AGG 0.487149 4.3:-12175539 MS.gene052136:CDS
GCTCAGTGAAGAAGTTGTTA+AGG 0.495990 4.3:-12176692 MS.gene052136:CDS
ATTAGCCAAGGGAAAGAGGC+AGG 0.499684 4.3:-12175091 MS.gene052136:CDS
GGTGTTTATGACAGTTGCAT+TGG 0.503191 4.3:-12174796 MS.gene052136:intron
ATTCTTCAAAATATGATGAA+AGG 0.503401 4.3:+12175676 None:intergenic
TGATTATGAAGAAAAGAAAG+TGG 0.506125 4.3:-12175557 MS.gene052136:CDS
GGCAGGGGAGTTATTGCAAT+GGG 0.509314 4.3:-12175074 MS.gene052136:CDS
TCCAACAAATGGAAATCCTA+AGG 0.513579 4.3:+12176908 None:intergenic
TTGTGATGAAATGCAAAAGA+AGG 0.522587 4.3:+12176970 None:intergenic
TAGCCAAGGGAAAGAGGCAG+GGG 0.528348 4.3:-12175089 MS.gene052136:CDS
GTTTATGAACAAGTGTTGAA+AGG 0.536878 4.3:-12175342 MS.gene052136:intron
AGAAAGCTTAATCTTCCTAA+AGG 0.544980 4.3:-12176933 MS.gene052136:CDS
AACACTTGTTCATAAACTTG+AGG 0.550446 4.3:+12175348 None:intergenic
AATAAGAACTTGTTCCCAGC+TGG 0.553588 4.3:+12176753 None:intergenic
AACAACTTCTTCACTGAGCT+AGG 0.567202 4.3:+12176696 None:intergenic
TACTGATCTAGAAGTTGTCA+TGG 0.575015 4.3:+12175404 None:intergenic
GAACAACTTGAAATTAGCCA+AGG 0.578712 4.3:-12175103 MS.gene052136:CDS
ATGTTGCTTCTGAAGTTCTG+AGG 0.584534 4.3:-12175021 MS.gene052136:CDS
ATTTCTAAAAGCTAATCTTG+AGG 0.586722 4.3:-12176874 MS.gene052136:CDS
AGCACCATATAAACACACAT+TGG 0.601255 4.3:-12176554 MS.gene052136:CDS
ACAAAGAGAGCCAAAACTGT+TGG 0.605657 4.3:+12176993 None:intergenic
ACAAGAATGTTCAAGTATGG+TGG 0.606348 4.3:-12176719 MS.gene052136:CDS
CATATAAACACACATTGGAA+AGG 0.612746 4.3:-12176549 MS.gene052136:intron
TTATTCATCATAGCTTATGG+AGG 0.631091 4.3:-12177036 None:intergenic
GAACACACATACAACACACA+TGG 0.635289 4.3:-12174774 MS.gene052136:CDS
TTAGCCAAGGGAAAGAGGCA+GGG 0.642507 4.3:-12175090 MS.gene052136:CDS
AACAACTTGAAATTAGCCAA+GGG 0.643857 4.3:-12175102 MS.gene052136:CDS
AGGCAGGGGAGTTATTGCAA+TGG 0.650161 4.3:-12175075 MS.gene052136:CDS
TGTGATAAAAGGTCTTGTGT+AGG 0.663837 4.3:+12175511 None:intergenic
AGGGGAGTTATTGCAATGGG+AGG 0.678989 4.3:-12175071 MS.gene052136:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATATTAGCATATTAT+TGG - chr4.3:12175519-12175538 MS.gene052136:CDS 10.0%
!! TTTGATTAAATTTATGAAAA+TGG - chr4.3:12175433-12175452 MS.gene052136:CDS 10.0%
!! TTTGAACATTAATTTCAATA+TGG - chr4.3:12176449-12176468 MS.gene052136:intron 15.0%
!!! ATTTTGAAGAATTTCTAAAA+GGG - chr4.3:12176089-12176108 MS.gene052136:intron 15.0%
!!! TATTTTGAAGAATTTCTAAA+AGG - chr4.3:12176088-12176107 MS.gene052136:intron 15.0%
!! AAACTTTATTACACATTCAT+CGG - chr4.3:12175868-12175887 MS.gene052136:intron 20.0%
!! AAATTGCAAAAAATAAGAAC+CGG + chr4.3:12175653-12175672 None:intergenic 20.0%
!! ATTCTTCAAAATATGATGAA+AGG + chr4.3:12176081-12176100 None:intergenic 20.0%
!! TAACAAGTAAATGTGATAAA+AGG + chr4.3:12176257-12176276 None:intergenic 20.0%
!! TATAAGAAAAAAAAGCAACA+TGG + chr4.3:12176573-12176592 None:intergenic 20.0%
!!! ATAAAGTTTGACTTTCTTTT+AGG + chr4.3:12175857-12175876 None:intergenic 20.0%
!!! ATTAGCTTTTAGAAATTCAA+AGG + chr4.3:12174876-12174895 None:intergenic 20.0%
!!! ATTTTTGACAAACATCTATA+TGG + chr4.3:12175905-12175924 None:intergenic 20.0%
!!! CTTTTATGAAAAACTTGATT+AGG - chr4.3:12176593-12176612 MS.gene052136:CDS 20.0%
!!! GCTAATTAACACTTTAAAAA+TGG + chr4.3:12175765-12175784 None:intergenic 20.0%
!!! TAAAGTTTGACTTTCTTTTA+GGG + chr4.3:12175856-12175875 None:intergenic 20.0%
!!! TGTTAATTTACACTTTTGAA+GGG - chr4.3:12175957-12175976 MS.gene052136:intron 20.0%
! AAAAACATGCTAGAATCATA+TGG + chr4.3:12175685-12175704 None:intergenic 25.0%
! AAAACAAGAATGTTCAAGTA+TGG - chr4.3:12175032-12175051 MS.gene052136:CDS 25.0%
! AAGTAATTTCTAAGTGTTTC+TGG + chr4.3:12175157-12175176 None:intergenic 25.0%
! AATGTGTATAGCTGTATTAT+AGG + chr4.3:12176004-12176023 None:intergenic 25.0%
! TAGAAATTACTTGCCAAATA+TGG - chr4.3:12175165-12175184 MS.gene052136:intron 25.0%
! TGAAAGCTACAAATGAAATA+AGG - chr4.3:12176161-12176180 MS.gene052136:intron 25.0%
! TGATTATGAAGAAAAGAAAG+TGG - chr4.3:12176197-12176216 MS.gene052136:intron 25.0%
! TTTATAAACACACATTGGAA+AGG - chr4.3:12175317-12175336 MS.gene052136:intron 25.0%
!! ATACTATTACTTCTTTTTGC+TGG - chr4.3:12176327-12176346 MS.gene052136:intron 25.0%
!! ATATCTAAAGCATGTATGTA+TGG - chr4.3:12176937-12176956 MS.gene052136:CDS 25.0%
!! ATTTCTAAAAGCTAATCTTG+AGG - chr4.3:12174880-12174899 MS.gene052136:intron 25.0%
!! CTTTGTTTATAAACACACAT+TGG - chr4.3:12175312-12175331 MS.gene052136:intron 25.0%
!! GTGTTAATTTACACTTTTGA+AGG - chr4.3:12175956-12175975 MS.gene052136:intron 25.0%
!! TTTCTAAAAGCTAATCTTGA+GGG - chr4.3:12174881-12174900 MS.gene052136:intron 25.0%
!!! AAAGGTTTGTTACATGAATA+GGG + chr4.3:12176063-12176082 None:intergenic 25.0%
!!! TTGTTGCTTATTTTTAAGCA+TGG - chr4.3:12176033-12176052 MS.gene052136:intron 25.0%
AAAATAAGAACCGGTTGAAT+TGG + chr4.3:12175644-12175663 None:intergenic 30.0%
AACAACTTGAAATTAGCCAA+GGG - chr4.3:12176652-12176671 MS.gene052136:CDS 30.0%
AACACTTGTTCATAAACTTG+AGG + chr4.3:12176409-12176428 None:intergenic 30.0%
AAGGTTGTCTCTTGTTAATA+AGG - chr4.3:12175081-12175100 MS.gene052136:CDS 30.0%
AGAAAGCTTAATCTTCCTAA+AGG - chr4.3:12174821-12174840 MS.gene052136:intron 30.0%
CATATAAACACACATTGGAA+AGG - chr4.3:12175205-12175224 MS.gene052136:intron 30.0%
CCATTTAGACATTTAAGTCA+CGG + chr4.3:12175729-12175748 None:intergenic 30.0%
CTATCATGAAATGAAATGCA+AGG + chr4.3:12175278-12175297 None:intergenic 30.0%
CTTTCCAATGTGTGTTTATA+TGG + chr4.3:12175207-12175226 None:intergenic 30.0%
TAATTAGCAGATAGTGAGAT+AGG - chr4.3:12175777-12175796 MS.gene052136:CDS 30.0%
TCCAGAAAATGAAATACTCT+TGG - chr4.3:12176709-12176728 MS.gene052136:CDS 30.0%
TGAGCAATTCTATCCATATT+TGG + chr4.3:12175181-12175200 None:intergenic 30.0%
TTCTAGATCAGTACTATCAT+TGG - chr4.3:12176360-12176379 MS.gene052136:intron 30.0%
TTGTCTCTTGTTAATAAGGT+TGG - chr4.3:12175085-12175104 MS.gene052136:CDS 30.0%
TTGTGATGAAATGCAAAAGA+AGG + chr4.3:12174787-12174806 None:intergenic 30.0%
TTTGAACAGATTGAACCAAT+TGG - chr4.3:12175702-12175721 MS.gene052136:CDS 30.0%
! AAATTTTCCTCAACAACAAC+TGG + chr4.3:12175460-12175479 None:intergenic 30.0%
! GAATTTCTAAAAGGGATCAT+TGG - chr4.3:12176097-12176116 MS.gene052136:intron 30.0%
! TCATTGGTTATGAAGTATCT+TGG - chr4.3:12176376-12176395 MS.gene052136:intron 30.0%
! TGAAGAAAAGAAAGTGGATT+TGG - chr4.3:12176203-12176222 MS.gene052136:intron 30.0%
!! AATTTACACTTTTGAAGGGA+AGG - chr4.3:12175961-12175980 MS.gene052136:intron 30.0%
!! CATAGTTTTACCAACAGTTT+TGG - chr4.3:12174751-12174770 MS.gene052136:CDS 30.0%
!! CTTGAAGCATCAAATTTTTC+AGG + chr4.3:12177026-12177045 None:intergenic 30.0%
!! GAAAGGTTTGTTACATGAAT+AGG + chr4.3:12176064-12176083 None:intergenic 30.0%
!! GTTTATGAACAAGTGTTGAA+AGG - chr4.3:12176412-12176431 MS.gene052136:intron 30.0%
!! GTTTTCAAGACTTCAATGTT+TGG - chr4.3:12174953-12174972 MS.gene052136:intron 30.0%
!!! TCCAAGAGTATTTCATTTTC+TGG + chr4.3:12176713-12176732 None:intergenic 30.0%
AAAAACCTTCCACTTGTATC+AGG + chr4.3:12176282-12176301 None:intergenic 35.0%
AATCTTCCTAAAGGAACCTT+AGG - chr4.3:12174830-12174849 MS.gene052136:intron 35.0%
ACAAGAATGTTCAAGTATGG+TGG - chr4.3:12175035-12175054 MS.gene052136:CDS 35.0%
ACCTTAGGATTTCCATTTGT+TGG - chr4.3:12174845-12174864 MS.gene052136:intron 35.0%
AGCACCATATAAACACACAT+TGG - chr4.3:12175200-12175219 MS.gene052136:intron 35.0%
AGCATAGGTGAAATCCTTTA+TGG + chr4.3:12176794-12176813 None:intergenic 35.0%
AGGGATGTTATAATCAGCAT+AGG + chr4.3:12176809-12176828 None:intergenic 35.0%
ATCAATCAGTTCCTATGTGT+AGG - chr4.3:12175242-12175261 MS.gene052136:intron 35.0%
ATCTTGAGGGAAAGCAAATA+AGG - chr4.3:12174894-12174913 MS.gene052136:intron 35.0%
ATGAAGCAAAAGCAACTAGA+AGG - chr4.3:12175110-12175129 MS.gene052136:intron 35.0%
ATTATAACATCCCTAGTGGA+TGG - chr4.3:12176815-12176834 MS.gene052136:CDS 35.0%
CCGTGACTTAAATGTCTAAA+TGG - chr4.3:12175726-12175745 MS.gene052136:CDS 35.0%
CTCTCTCTAACATGATTGAA+AGG + chr4.3:12175490-12175509 None:intergenic 35.0%
GAACAACTTGAAATTAGCCA+AGG - chr4.3:12176651-12176670 MS.gene052136:CDS 35.0%
TACTGATCTAGAAGTTGTCA+TGG + chr4.3:12176353-12176372 None:intergenic 35.0%
TCAAAGGTTTCTCCAACAAA+TGG + chr4.3:12174860-12174879 None:intergenic 35.0%
TCAGGATTTGAAAACAGTGT+TGG + chr4.3:12177008-12177027 None:intergenic 35.0%
TCCAACAAATGGAAATCCTA+AGG + chr4.3:12174849-12174868 None:intergenic 35.0%
! AGTGGATTTGGATGAAAAGA+AGG - chr4.3:12176215-12176234 MS.gene052136:intron 35.0%
! GAGAATATTGCTGTGTTTTG+TGG - chr4.3:12174977-12174996 MS.gene052136:intron 35.0%
! TGGAAGGTTTTTGAATGAAG+TGG - chr4.3:12176290-12176309 MS.gene052136:intron 35.0%
! TGTGATAAAAGGTCTTGTGT+AGG + chr4.3:12176246-12176265 None:intergenic 35.0%
AAACATACCTTCCATCCACT+AGG + chr4.3:12176829-12176848 None:intergenic 40.0%
AACAACTTCTTCACTGAGCT+AGG + chr4.3:12175061-12175080 None:intergenic 40.0%
AACATACCTTCCATCCACTA+GGG + chr4.3:12176828-12176847 None:intergenic 40.0%
ACAAAGAGAGCCAAAACTGT+TGG + chr4.3:12174764-12174783 None:intergenic 40.0%
CAATCAACTTTCCTGGAACA+AGG - chr4.3:12176125-12176144 MS.gene052136:intron 40.0%
CAATTCAACTCGAAATCAGC+TGG - chr4.3:12175574-12175593 MS.gene052136:CDS 40.0%
CATTTAAGTCACGGTCCAAT+TGG + chr4.3:12175720-12175739 None:intergenic 40.0%
CTTGTTACACCTGATACAAG+TGG - chr4.3:12176270-12176289 MS.gene052136:intron 40.0%
GAACACACATACAACACACA+TGG - chr4.3:12176980-12176999 MS.gene052136:CDS 40.0%
GCTCAGTGAAGAAGTTGTTA+AGG - chr4.3:12175062-12175081 MS.gene052136:CDS 40.0%
GCTGATTATAACATCCCTAG+TGG - chr4.3:12176811-12176830 MS.gene052136:CDS 40.0%
GGAAATCCTAAGGTTCCTTT+AGG + chr4.3:12174839-12174858 None:intergenic 40.0%
GGTGTTTATGACAGTTGCAT+TGG - chr4.3:12176958-12176977 MS.gene052136:CDS 40.0%
TCCTGGAACAAGGTTTCATA+AGG - chr4.3:12176135-12176154 MS.gene052136:intron 40.0%
TGAAATTAGCCAAGGGAAAG+AGG - chr4.3:12176659-12176678 MS.gene052136:CDS 40.0%
TTACACCTGATACAAGTGGA+AGG - chr4.3:12176274-12176293 MS.gene052136:intron 40.0%
! AAATGGTCCAGTTGTTGTTG+AGG - chr4.3:12175450-12175469 MS.gene052136:intron 40.0%
! AATAAGAACTTGTTCCCAGC+TGG + chr4.3:12175004-12175023 None:intergenic 40.0%
! ATTCTGGCTATACTTTAGCC+GGG - chr4.3:12175613-12175632 MS.gene052136:CDS 40.0%
! GATTCTGGCTATACTTTAGC+CGG - chr4.3:12175612-12175631 MS.gene052136:CDS 40.0%
!! ATGTTGCTTCTGAAGTTCTG+AGG - chr4.3:12176733-12176752 MS.gene052136:CDS 40.0%
!! CAGCTGATTTCGAGTTGAAT+TGG + chr4.3:12175576-12175595 None:intergenic 40.0%
!! TGATTTCGAGTTGAATTGGC+TGG + chr4.3:12175572-12175591 None:intergenic 40.0%
!! TTCGCTTGTTGGTTTGATTC+TGG - chr4.3:12175597-12175616 MS.gene052136:CDS 40.0%
CAGTTCCTATGTGTAGGACA+AGG - chr4.3:12175248-12175267 MS.gene052136:intron 45.0%
CGCTTTCAGAGATGCCATAA+AGG - chr4.3:12176777-12176796 MS.gene052136:CDS 45.0%
GAACACCTTGTCCTACACAT+AGG + chr4.3:12175256-12175275 None:intergenic 45.0%
GCCTTATGAAACCTTGTTCC+AGG + chr4.3:12176139-12176158 None:intergenic 45.0%
TACTTGAGGTCGGAACACAA+GGG - chr4.3:12176516-12176535 MS.gene052136:intron 45.0%
! TAACATCCCTAGTGGATGGA+AGG - chr4.3:12176819-12176838 MS.gene052136:CDS 45.0%
!! AAAACAGTGCAGCTGACTTG+AGG + chr4.3:12176480-12176499 None:intergenic 45.0%
!! AAATCAGCTGGTTCGCTTGT+TGG - chr4.3:12175586-12175605 MS.gene052136:CDS 45.0%
AGGCAGGGGAGTTATTGCAA+TGG - chr4.3:12176679-12176698 MS.gene052136:CDS 50.0%
AGGGGAGTTATTGCAATGGG+AGG - chr4.3:12176683-12176702 MS.gene052136:CDS 50.0%
ATTAGCCAAGGGAAAGAGGC+AGG - chr4.3:12176663-12176682 MS.gene052136:CDS 50.0%
CACTGCAACGTACTTGAGGT+CGG - chr4.3:12176506-12176525 MS.gene052136:intron 50.0%
GGCAGGGGAGTTATTGCAAT+GGG - chr4.3:12176680-12176699 MS.gene052136:CDS 50.0%
GGCTTCGCAATCAACTTTCC+TGG - chr4.3:12176118-12176137 MS.gene052136:intron 50.0%
GTACTTGAGGTCGGAACACA+AGG - chr4.3:12176515-12176534 MS.gene052136:intron 50.0%
TTAGCCAAGGGAAAGAGGCA+GGG - chr4.3:12176664-12176683 MS.gene052136:CDS 50.0%
! CCGGGTTGAACCAATTCAAC+CGG - chr4.3:12175631-12175650 MS.gene052136:CDS 50.0%
! CCGGTTGAATTGGTTCAACC+CGG + chr4.3:12175634-12175653 None:intergenic 50.0%
! CTGTGTTTTGTGGACCAGCT+GGG - chr4.3:12174987-12175006 MS.gene052136:intron 50.0%
CGTGCACTGCAACGTACTTG+AGG - chr4.3:12176502-12176521 MS.gene052136:intron 55.0%
TAGCCAAGGGAAAGAGGCAG+GGG - chr4.3:12176665-12176684 MS.gene052136:CDS 55.0%
! GCTGTGTTTTGTGGACCAGC+TGG - chr4.3:12174986-12175005 MS.gene052136:intron 55.0%
!! CAGTGCAGCTGACTTGAGGT+CGG + chr4.3:12176476-12176495 None:intergenic 55.0%
ACTCCCCTGCCTCTTTCCCT+TGG + chr4.3:12176671-12176690 None:intergenic 60.0%
!! TCTCTGAAAGCGCCACCGAC+AGG + chr4.3:12176769-12176788 None:intergenic 60.0%
!! CTGAAAGCGCCACCGACAGG+CGG + chr4.3:12176766-12176785 None:intergenic 65.0%
!! TGAAAGCGCCACCGACAGGC+GGG + chr4.3:12176765-12176784 None:intergenic 65.0%
TGAGGCTGTCCCCCGCCTGT+CGG - chr4.3:12176751-12176770 MS.gene052136:CDS 70.0%
! AAAGCGCCACCGACAGGCGG+GGG + chr4.3:12176763-12176782 None:intergenic 70.0%
!! GAAAGCGCCACCGACAGGCG+GGG + chr4.3:12176764-12176783 None:intergenic 70.0%
! GGCTGTCCCCCGCCTGTCGG+TGG - chr4.3:12176754-12176773 MS.gene052136:CDS 80.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 12174731 12177045 12174731 ID=MS.gene052136
chr4.3 mRNA 12174731 12177045 12174731 ID=MS.gene052136.t1;Parent=MS.gene052136
chr4.3 exon 12176550 12177045 12176550 ID=MS.gene052136.t1.exon1;Parent=MS.gene052136.t1
chr4.3 CDS 12176550 12177045 12176550 ID=cds.MS.gene052136.t1;Parent=MS.gene052136.t1
chr4.3 exon 12175504 12175798 12175504 ID=MS.gene052136.t1.exon2;Parent=MS.gene052136.t1
chr4.3 CDS 12175504 12175798 12175504 ID=cds.MS.gene052136.t1;Parent=MS.gene052136.t1
chr4.3 exon 12175343 12175461 12175343 ID=MS.gene052136.t1.exon3;Parent=MS.gene052136.t1
chr4.3 CDS 12175343 12175461 12175343 ID=cds.MS.gene052136.t1;Parent=MS.gene052136.t1
chr4.3 exon 12175012 12175124 12175012 ID=MS.gene052136.t1.exon4;Parent=MS.gene052136.t1
chr4.3 CDS 12175012 12175124 12175012 ID=cds.MS.gene052136.t1;Parent=MS.gene052136.t1
chr4.3 exon 12174731 12174804 12174731 ID=MS.gene052136.t1.exon5;Parent=MS.gene052136.t1
chr4.3 CDS 12174731 12174804 12174731 ID=cds.MS.gene052136.t1;Parent=MS.gene052136.t1
Gene Sequence

>MS.gene052136

CTTATGGAGGTGACAAAGCTCATAGTTTTACCAACAGTTTTGGCTCTCTTTGTCCTTCTTTTGCATTTCATCACAAGAATTATCAAACTCAGAAAGCTTAATCTTCCTAAAGGAACCTTAGGATTTCCATTTGTTGGAGAAACCTTTGAATTTCTAAAAGCTAATCTTGAGGGAAAGCAAATAAGGTTCATACAAGAGAGAATGAAGAAATATGACTCAAAAGTTTTCAAGACTTCAATGTTTGGAGAGAATATTGCTGTGTTTTGTGGACCAGCTGGGAACAAGTTCTTATTTAGCAATGAAAACAAGAATGTTCAAGTATGGTGGCCTAGCTCAGTGAAGAAGTTGTTAAGGTTGTCTCTTGTTAATAAGGTTGGTGATGAAGCAAAAGCAACTAGAAGGTTGCTTATGAGTTTTCTTAATCCAGAAACACTTAGAAATTACTTGCCAAATATGGATAGAATTGCTCAGCACCATATAAACACACATTGGAAAGGTAAGAAATTTTGTGATCAATCAGTTCCTATGTGTAGGACAAGGTGTTCCTTGCATTTCATTTCATGATAGTTTGTGAATTATTACTTTGTTTATAAACACACATTGGAAAGGTAAGAAATTTTGTGATCAATCAGTTCCTATGTGTAGGACAAGGTGTTCCTTGCATTTCATTTCATGATAGTTTGTGAATTATTACTTTGTTTTTTTGATTAAATTTATGAAAATGGTCCAGTTGTTGTTGAGGAAAATTTCAACGCTCCTTTCAATCATGTTAGAGAGAGAAGCACTGTTTTATATATTAGCATATTATTGGCAGCAATGTTTTAAAAATCGAACTGAACCAGCCAATTCAACTCGAAATCAGCTGGTTCGCTTGTTGGTTTGATTCTGGCTATACTTTAGCCGGGTTGAACCAATTCAACCGGTTCTTATTTTTTGCAATTTTTTTACTTACCATATGATTCTAGCATGTTTTTGAACAGATTGAACCAATTGGACCGTGACTTAAATGTCTAAATGGTTCAATCTTCGAACCATTTTTAAAGTGTTAATTAGCAGATAGTGAGATAGGTACATGACATAAAAGTTCTTACAACAGCTAGAAACTATTGTTTTTCACATTTACCCTAAAAGAAAGTCAAACTTTATTACACATTCATCGGATCGCATTTCACCATATAGATGTTTGTCAAAAATAAAAAAGAATGTTATGATCAAAGTTTAATATGTGTTAATTTACACTTTTGAAGGGAAGGAGCAAGTTGTTGTCTATCCTATAATACAGCTATACACATTTGAATTAGCTTGTTGCTTATTTTTAAGCATGGAAGACCCTATTCATGTAACAAACCTTTCATCATATTTTGAAGAATTTCTAAAAGGGATCATTGGCTTCGCAATCAACTTTCCTGGAACAAGGTTTCATAAGGCAATGAAAGCTACAAATGAAATAAGGAAAGAAATTAAAATGATTATGAAGAAAAGAAAGTGGATTTGGATGAAAAGAAGGCATCACCTACACAAGACCTTTTATCACATTTACTTGTTACACCTGATACAAGTGGAAGGTTTTTGAATGAAGTGGAGATTATTGATAACATACTATTACTTCTTTTTGCTGGCCATGACAACTTCTAGATCAGTACTATCATTGGTTATGAAGTATCTTGGAAATTTGCCTCAAGTTTATGAACAAGTGTTGAAAGGTTTGAAGTAAAGTCTTTGAACATTAATTTCAATATGGTCCGACCTCAAGTCAGCTGCACTGTTTTTTCGTGCACTGCAACGTACTTGAGGTCGGAACACAAGGGAATTTGATTATATAATGAAAATTTTATAGCACCATGTTGCTTTTTTTTCTTATACTTTTATGAAAAACTTGATTAGGATAAATGTTGAAATTGTTTTTTCTTTTTTATGACAGAACAACTTGAAATTAGCCAAGGGAAAGAGGCAGGGGAGTTATTGCAATGGGAGGATATCCAGAAAATGAAATACTCTTGGAATGTTGCTTCTGAAGTTCTGAGGCTGTCCCCCGCCTGTCGGTGGCGCTTTCAGAGATGCCATAAAGGATTTCACCTATGCTGATTATAACATCCCTAGTGGATGGAAGGTATGTTTCTTGTTTAACTTAATCTTATTTCAAGTATTTTTCTTTAATCTAATTCAATATACATGTATGTTGATTATTTCATATATATATATATATATATCTAAAGCATGTATGTATGGTGTTTATGACAGTTGCATTGGAACACACATACAACACACATGGATCCAACACTGTTTTCAAATCCTGAAAAATTTGATGCTTCAAG

Protein sequence

>MS.gene052136.t1

LMEVTKLIVLPTVLALFVLLLHFITRIIKLRKLNLPKGTLGFPFVGETFEFLKANLEGKQIRFIQERMKKYDSKVFKTSMFGENIAVFCGPAGNKFLFSNENKNVQVWWPSSVKKLLRLSLVNKVGDEAKATRRLLMSFLNPETLRNYLPNMDRIAQHHINTHWKGKEQVVVYPIIQLYTFELACCLFLSMEDPIHVTNLSSYFEEFLKGIIGFAINFPGTRFHKAMKATNEIRKEIKMIMKKRKWIWMKRRHHLHKTFYHIYLLLITYYYFFLLAMTTSRSVLSLVMKYLGNLPQVYEQVLKEQLEISQGKEAGELLQWEDIQKMKYSWNVASEVLRLSPLHWNTHTTHMDPTLFSNPEKFDAS