AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene34479

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34479.t1 MTR_1g100673 100.000 177 0 0 1 177 1 177 2.27e-132 371
MS.gene34479.t1 MTR_2g040570 50.467 107 46 3 7 112 17 117 5.75e-29 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene34479.t1 AT4G25550 89.266 177 19 0 1 177 1 177 9.09e-121 342
MS.gene34479.t1 AT4G29820 58.235 170 71 0 6 175 28 197 9.52e-70 213

Find 63 sgRNAs with CRISPR-Local

Find 381 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACATTATAGTTTCAAAATT+TGG 0.111915 1.2:+75468476 None:intergenic
CATCTTACAATTCCGATATT+TGG 0.146769 1.2:+75467424 None:intergenic
CCGAAGGTGTAGCTCGATAA+TGG 0.323738 1.2:+75471877 None:intergenic
TTGCTCAAGTTGCCAAATAT+CGG 0.327172 1.2:-75467436 MS.gene34479:CDS
GTTATATGAGGAGGACAGTA+TGG 0.348606 1.2:+75468452 None:intergenic
CATATTCTTCTTCTGCAAAT+CGG 0.351829 1.2:-75468832 MS.gene34479:CDS
CCTGGCTTGAGACGGCCGCC+TGG 0.352635 1.2:+75468790 None:intergenic
CTTCTACATGGCCGTGCGTT+TGG 0.375360 1.2:-75466808 MS.gene34479:CDS
ATATTCTTCTTCTGCAAATC+GGG 0.410634 1.2:-75468831 MS.gene34479:CDS
TGAACTCTATGACAATGTTC+AGG 0.434805 1.2:-75468237 MS.gene34479:intron
CTGGCTTGAGACGGCCGCCT+GGG 0.436161 1.2:+75468791 None:intergenic
CCTTGTTCACTTATCTGAAA+GGG 0.439725 1.2:-75468309 MS.gene34479:CDS
CCAGGCGGCCGTCTCAAGCC+AGG 0.446518 1.2:-75468790 MS.gene34479:CDS
TGTAATCATACCTGCCAGTC+AGG 0.447945 1.2:+75468608 None:intergenic
TTGTATGTTTACAGAAATTG+AGG 0.449117 1.2:-75468684 MS.gene34479:intron
CGAAGGTGTAGCTCGATAAT+GGG 0.467758 1.2:+75471878 None:intergenic
GAGGTATCTTTCTCCATCTT+AGG 0.484631 1.2:+75471844 None:intergenic
CAGGCGGCCGTCTCAAGCCA+GGG 0.484829 1.2:-75468789 MS.gene34479:CDS
CGTCTCAAGCCAGGGGAGAA+TGG 0.493218 1.2:-75468781 MS.gene34479:intron
TCCTTGTTCACTTATCTGAA+AGG 0.498741 1.2:-75468310 MS.gene34479:CDS
AGAAAATTGACTAGCAAGCT+TGG 0.501691 1.2:-75468653 MS.gene34479:CDS
CGGCCTTGTACCTGACTGGC+AGG 0.509791 1.2:-75468618 MS.gene34479:intron
TGCCAGTCAGGTACAAGGCC+GGG 0.510170 1.2:+75468620 None:intergenic
CGGCACTAAGGAGCCTAAGA+TGG 0.511864 1.2:-75471857 MS.gene34479:CDS
AACTTCAGTTATATGAAAGA+AGG 0.526771 1.2:-75470717 MS.gene34479:intron
GGAATGAGGACCAGCGTGGA+AGG 0.530721 1.2:-75470696 MS.gene34479:CDS
ATTTGCAGAAGAAGAATATG+AGG 0.532812 1.2:+75468835 None:intergenic
TAGGTGAATGTGTTGCAATC+TGG 0.534479 1.2:-75468505 MS.gene34479:CDS
TAGAAGCTGAAGCTGAGCCT+TGG 0.546308 1.2:+75466825 None:intergenic
CCATTATCGAGCTACACCTT+CGG 0.548731 1.2:-75471877 MS.gene34479:CDS
TGTATGTTTACAGAAATTGA+GGG 0.552205 1.2:-75468683 MS.gene34479:intron
CCCTTTCAGATAAGTGAACA+AGG 0.554396 1.2:+75468309 None:intergenic
GCTCAGCTTCAGCTTCTACA+TGG 0.559758 1.2:-75466820 MS.gene34479:CDS
CACCCGGCCTTGTACCTGAC+TGG 0.560733 1.2:-75468622 MS.gene34479:CDS
AAGATCTTACCATTCTCCCC+TGG 0.560818 1.2:+75468772 None:intergenic
GAGAAAGATGATACCCTCTC+AGG 0.560955 1.2:-75471914 None:intergenic
CTGCCAGTCAGGTACAAGGC+CGG 0.563251 1.2:+75468619 None:intergenic
GTTATATGAAAGAAGGAATG+AGG 0.564077 1.2:-75470710 MS.gene34479:CDS
GGATGACTATCGCGATCCCA+TGG 0.569454 1.2:-75467473 MS.gene34479:CDS
CTTAGGCTCCTTAGTGCCGA+AGG 0.573156 1.2:+75471861 None:intergenic
GCGATAGTCATCCATCGTGT+TGG 0.576415 1.2:+75467483 None:intergenic
ATACCTGCCAGTCAGGTACA+AGG 0.579704 1.2:+75468615 None:intergenic
GCACTCCGATGTGGAAGCCA+AGG 0.582804 1.2:-75466842 MS.gene34479:CDS
GAGCTACACCTTCGGCACTA+AGG 0.583476 1.2:-75471869 MS.gene34479:CDS
CATTCTCCCCTGGCTTGAGA+CGG 0.592769 1.2:+75468782 None:intergenic
TCCTCATATAACAAAACCCA+AGG 0.593485 1.2:-75468441 MS.gene34479:intron
CTGAGCCTTGGCTTCCACAT+CGG 0.595757 1.2:+75466837 None:intergenic
AATGTGTTGCAATCTGGTGG+AGG 0.600436 1.2:-75468499 MS.gene34479:CDS
TCATGAATGTACCAAACGCA+CGG 0.628714 1.2:+75466797 None:intergenic
CAAAACAGAGAAACAGACCA+TGG 0.632294 1.2:+75467456 None:intergenic
GTGAATGTGTTGCAATCTGG+TGG 0.633660 1.2:-75468502 MS.gene34479:CDS
TATGTGTTTACTACCTGAGA+GGG 0.633947 1.2:+75471901 None:intergenic
AAGCTTGGTGCTAATTCACC+CGG 0.635284 1.2:-75468638 MS.gene34479:CDS
AGCAAGACGATCAGCGACGG+AGG 0.638191 1.2:+75471825 None:intergenic
AGGCGGCCGTCTCAAGCCAG+GGG 0.645996 1.2:-75468788 MS.gene34479:CDS
TTGTCCAAAGCACTCCGATG+TGG 0.649392 1.2:-75466851 MS.gene34479:intron
AAAACAGAGAAACAGACCAT+GGG 0.660317 1.2:+75467457 None:intergenic
CAGTAAAATTCCTTCCACGC+TGG 0.660338 1.2:+75470686 None:intergenic
ACGAGCAAGACGATCAGCGA+CGG 0.664522 1.2:+75471822 None:intergenic
GTATGTGTTTACTACCTGAG+AGG 0.672150 1.2:+75471900 None:intergenic
TTGTCATAGAGTTCAAACAA+TGG 0.696073 1.2:+75468245 None:intergenic
AGAAGGAATGAGGACCAGCG+TGG 0.707171 1.2:-75470700 MS.gene34479:CDS
TGAAGTTGAAACCAACACGA+TGG 0.733835 1.2:-75467494 MS.gene34479:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACATAAACAATATATTATA+GGG + chr1.2:75467093-75467112 None:intergenic 10.0%
!! TTACATAAACAATATATTAT+AGG + chr1.2:75467094-75467113 None:intergenic 10.0%
!!! AATATGATAAAATTTTGTAT+TGG + chr1.2:75468355-75468374 None:intergenic 10.0%
!!! ATATGATAAAATTTTGTATT+GGG + chr1.2:75468354-75468373 None:intergenic 10.0%
!!! TTTTTTCCATAAAAAAAAAA+AGG + chr1.2:75470688-75470707 None:intergenic 10.0%
!! AAATTCATTATATACTCAAA+TGG - chr1.2:75467928-75467947 MS.gene34479:intron 15.0%
!! ATCGAATAAAATTAATCAAA+AGG + chr1.2:75466965-75466984 None:intergenic 15.0%
!! CTAATTCTTAAAATAACAAA+TGG + chr1.2:75470991-75471010 None:intergenic 15.0%
!! GTCATATAAAATGTTTATAT+TGG + chr1.2:75467763-75467782 None:intergenic 15.0%
!! TAAGATTACATCATTAAAAA+AGG + chr1.2:75468407-75468426 None:intergenic 15.0%
!! TACATTATAGTTTCAAAATT+TGG + chr1.2:75470226-75470245 None:intergenic 15.0%
!! TATAATGAAGAGATTTAAAA+CGG - chr1.2:75470549-75470568 MS.gene34479:intron 15.0%
!! TCGAATAAAATTAATCAAAA+GGG + chr1.2:75466964-75466983 None:intergenic 15.0%
!!! AAATGTCCTTTTTTTTTTTA+TGG - chr1.2:75470679-75470698 MS.gene34479:intron 15.0%
!!! AGTAAAATTATTAGTTGTTT+TGG - chr1.2:75469340-75469359 MS.gene34479:intron 15.0%
!!! ATAAAATTACATTTGAAGTT+TGG + chr1.2:75468076-75468095 None:intergenic 15.0%
!!! CATTTGTTATTTTAAGAATT+AGG - chr1.2:75470989-75471008 MS.gene34479:intron 15.0%
!!! TAAAAAGTGTAAAAACTAAA+TGG + chr1.2:75469720-75469739 None:intergenic 15.0%
!!! TAAAATTACATTTGAAGTTT+GGG + chr1.2:75468075-75468094 None:intergenic 15.0%
!!! TCTATAATTCTATTTTAGAT+TGG - chr1.2:75469393-75469412 MS.gene34479:intron 15.0%
!!! TTATATTTTAGTTTGTTGAA+GGG - chr1.2:75469282-75469301 MS.gene34479:intron 15.0%
!!! TTTATATTTTAGTTTGTTGA+AGG - chr1.2:75469281-75469300 MS.gene34479:intron 15.0%
!! AAAAAAAAAGTTTCTGTTGT+TGG + chr1.2:75470602-75470621 None:intergenic 20.0%
!! AAATTTAATCTGTGAATGTT+TGG - chr1.2:75471821-75471840 MS.gene34479:CDS 20.0%
!! AAGTAAAAAGATTATATGAG+AGG + chr1.2:75467885-75467904 None:intergenic 20.0%
!! GTATTAATTCATTGGATTAT+GGG - chr1.2:75471119-75471138 MS.gene34479:intron 20.0%
!! TATTAGTAAAATTGGGAATT+GGG + chr1.2:75467026-75467045 None:intergenic 20.0%
!! TGTATTAATTCATTGGATTA+TGG - chr1.2:75471118-75471137 MS.gene34479:intron 20.0%
!!! AAAATTACATTTGAAGTTTG+GGG + chr1.2:75468074-75468093 None:intergenic 20.0%
!!! AAATAAAGCCATATAACTTT+TGG + chr1.2:75467694-75467713 None:intergenic 20.0%
!!! AATAAAGCCATATAACTTTT+GGG + chr1.2:75467693-75467712 None:intergenic 20.0%
!!! AATTACTATCATATTTTGAC+TGG + chr1.2:75470799-75470818 None:intergenic 20.0%
!!! ACATACAAAAAAAGTACATT+TGG + chr1.2:75470003-75470022 None:intergenic 20.0%
!!! AGTAGAGTATTAGTAAAATT+GGG + chr1.2:75467033-75467052 None:intergenic 20.0%
!!! GAAAGGTAATTTTGATATTT+AGG + chr1.2:75471663-75471682 None:intergenic 20.0%
!!! TGGAAAAAAAAATGTTCTTT+TGG - chr1.2:75470699-75470718 MS.gene34479:CDS 20.0%
!!! TGTGTTAGTTTTCATTTTTT+TGG + chr1.2:75471783-75471802 None:intergenic 20.0%
! AAAATGTGAAAAGACATAGA+TGG + chr1.2:75468144-75468163 None:intergenic 25.0%
! AAACCTATAGATAAACTTTG+GGG + chr1.2:75468559-75468578 None:intergenic 25.0%
! AACAATAAGAGAAGTAAAAG+AGG + chr1.2:75466930-75466949 None:intergenic 25.0%
! AACTTCAGTTATATGAAAGA+AGG - chr1.2:75467982-75468001 MS.gene34479:intron 25.0%
! ACAAACCTATAGATAAACTT+TGG + chr1.2:75468561-75468580 None:intergenic 25.0%
! ACAATAAGAGAAGTAAAAGA+GGG + chr1.2:75466929-75466948 None:intergenic 25.0%
! AGTTTATCTATAGGTTTGTA+CGG - chr1.2:75468562-75468581 MS.gene34479:intron 25.0%
! ATATATTAAAGTTGCATGCT+AGG + chr1.2:75468885-75468904 None:intergenic 25.0%
! ATCAATTAATTGCAGAGATA+TGG - chr1.2:75470855-75470874 MS.gene34479:intron 25.0%
! ATCAATTTACCTTATTGTGA+AGG + chr1.2:75469247-75469266 None:intergenic 25.0%
! ATCCCTTATCAACAATTTAA+AGG - chr1.2:75471406-75471425 MS.gene34479:intron 25.0%
! ATGTTCTCTACAGAAATAAT+AGG + chr1.2:75469768-75469787 None:intergenic 25.0%
! ATTAGTAAAATTGGGAATTG+GGG + chr1.2:75467025-75467044 None:intergenic 25.0%
! ATTATATACTCAAATGGTTC+TGG - chr1.2:75467934-75467953 MS.gene34479:intron 25.0%
! CAAACCTATAGATAAACTTT+GGG + chr1.2:75468560-75468579 None:intergenic 25.0%
! CACTGTTTGTATTAATTCAT+TGG - chr1.2:75471111-75471130 MS.gene34479:intron 25.0%
! CTTCATTTATCTGAATTGAA+GGG - chr1.2:75468802-75468821 MS.gene34479:CDS 25.0%
! GTATTAGTAAAATTGGGAAT+TGG + chr1.2:75467027-75467046 None:intergenic 25.0%
! TAACACATTGTAAATGTAGA+TGG - chr1.2:75471796-75471815 MS.gene34479:intron 25.0%
! TACATCATTAAAAAAGGTAG+AGG + chr1.2:75468401-75468420 None:intergenic 25.0%
! TATACTATACCACAGTATTA+TGG + chr1.2:75468706-75468725 None:intergenic 25.0%
! TATTATGGTTTAAGAACCAT+GGG + chr1.2:75468691-75468710 None:intergenic 25.0%
! TATTTGCAGACTATCATATT+CGG + chr1.2:75469964-75469983 None:intergenic 25.0%
! TCCACTAACTACTATTAATA+CGG + chr1.2:75469017-75469036 None:intergenic 25.0%
! TCCCTTATCAACAATTTAAA+GGG - chr1.2:75471407-75471426 MS.gene34479:intron 25.0%
! TCTTCATTTATCTGAATTGA+AGG - chr1.2:75468801-75468820 MS.gene34479:CDS 25.0%
! TCTTTCATATAACTGAAGTT+TGG + chr1.2:75467982-75468001 None:intergenic 25.0%
! TGTATGTTTACAGAAATTGA+GGG - chr1.2:75470016-75470035 MS.gene34479:intron 25.0%
! TTCCTCTACTTCTAATTAAA+GGG - chr1.2:75468269-75468288 MS.gene34479:CDS 25.0%
! TTGTATGTTTACAGAAATTG+AGG - chr1.2:75470015-75470034 MS.gene34479:intron 25.0%
! TTTCCTCTACTTCTAATTAA+AGG - chr1.2:75468268-75468287 MS.gene34479:CDS 25.0%
!! AAATTACATTTGAAGTTTGG+GGG + chr1.2:75468073-75468092 None:intergenic 25.0%
!! AGAACTTTTCATCTTATGAT+TGG - chr1.2:75470730-75470749 MS.gene34479:intron 25.0%
!! AGTTAGTGATCATTTTAAAC+TGG + chr1.2:75470920-75470939 None:intergenic 25.0%
!! ATAAAGCCATATAACTTTTG+GGG + chr1.2:75467692-75467711 None:intergenic 25.0%
!! ATAGGTATTCAGAAATTTTC+TGG - chr1.2:75467459-75467478 MS.gene34479:CDS 25.0%
!! ATGCAATAAAGGTATATTAG+TGG - chr1.2:75469055-75469074 MS.gene34479:intron 25.0%
!! CAGTAGAGTATTAGTAAAAT+TGG + chr1.2:75467034-75467053 None:intergenic 25.0%
!! CTTTGTACTTGATTTGATAT+GGG - chr1.2:75467184-75467203 MS.gene34479:intron 25.0%
!! GAAGAAAAATGTTAGTTTAG+AGG + chr1.2:75468743-75468762 None:intergenic 25.0%
!! TGATAAAATTTTGTATTGGG+AGG + chr1.2:75468351-75468370 None:intergenic 25.0%
!! TTCAAGTTTAGAAAAAACTG+TGG - chr1.2:75467412-75467431 MS.gene34479:intron 25.0%
!!! ACAGTTTTTTCTAAACTTGA+AGG + chr1.2:75467413-75467432 None:intergenic 25.0%
!!! AGTTTGATTTGAGAGATTAT+TGG - chr1.2:75470647-75470666 MS.gene34479:intron 25.0%
!!! GCTTTATGCTTTATTTTTGT+AGG - chr1.2:75469824-75469843 MS.gene34479:intron 25.0%
!!! GTTATTTTAAGAATTAGGAC+TGG - chr1.2:75470994-75471013 MS.gene34479:intron 25.0%
!!! GTTTGATTTGAGAGATTATT+GGG - chr1.2:75470648-75470667 MS.gene34479:intron 25.0%
!!! TTCTATTTTAGATTGGATAG+TGG - chr1.2:75469400-75469419 MS.gene34479:intron 25.0%
AAGGGATTATACAATGTCTT+TGG + chr1.2:75471393-75471412 None:intergenic 30.0%
AATAATAGGACAGGACATTA+TGG + chr1.2:75469754-75469773 None:intergenic 30.0%
AATATCGGAATTGTAAGATG+AGG - chr1.2:75471278-75471297 MS.gene34479:intron 30.0%
ACCCCTTTAAATTGTTGATA+AGG + chr1.2:75471412-75471431 None:intergenic 30.0%
AGACAAACTCAATGTGTATA+TGG + chr1.2:75467725-75467744 None:intergenic 30.0%
ATAATAGGACAGGACATTAT+GGG + chr1.2:75469753-75469772 None:intergenic 30.0%
ATATTCTTCTTCTGCAAATC+GGG - chr1.2:75469868-75469887 MS.gene34479:intron 30.0%
ATCCCTTTAATTAGAAGTAG+AGG + chr1.2:75468274-75468293 None:intergenic 30.0%
ATCTAGTAATCCATTTCCTA+AGG - chr1.2:75469218-75469237 MS.gene34479:intron 30.0%
ATGATTGATGAAAGAGTAAG+AGG + chr1.2:75467441-75467460 None:intergenic 30.0%
ATTTGCAGAAGAAGAATATG+AGG + chr1.2:75469867-75469886 None:intergenic 30.0%
CAAGAAACTAAATCTCTTGA+TGG + chr1.2:75467566-75467585 None:intergenic 30.0%
CAGAGATAATAATGCTACAA+TGG + chr1.2:75468459-75468478 None:intergenic 30.0%
CAGTCTATGCAATGATAATA+GGG + chr1.2:75471039-75471058 None:intergenic 30.0%
CATATTCTTCTTCTGCAAAT+CGG - chr1.2:75469867-75469886 MS.gene34479:intron 30.0%
CATCTTACAATTCCGATATT+TGG + chr1.2:75471278-75471297 None:intergenic 30.0%
CCACTAACTACTATTAATAC+GGG + chr1.2:75469016-75469035 None:intergenic 30.0%
CCATATCAAATCAAGTACAA+AGG + chr1.2:75467186-75467205 None:intergenic 30.0%
CCCTTATCAACAATTTAAAG+GGG - chr1.2:75471408-75471427 MS.gene34479:intron 30.0%
CTTACTCTTTCATCAATCAT+AGG - chr1.2:75467441-75467460 MS.gene34479:CDS 30.0%
GAAATGTGTTACACAAAACA+AGG - chr1.2:75467335-75467354 MS.gene34479:intron 30.0%
GCACATACACATATACAATT+AGG - chr1.2:75471436-75471455 MS.gene34479:intron 30.0%
GGTGAAATAGAGGAATATTT+CGG + chr1.2:75468610-75468629 None:intergenic 30.0%
GTAGGCATATCCTTAAAAAA+GGG + chr1.2:75469584-75469603 None:intergenic 30.0%
GTATTATGGTTTAAGAACCA+TGG + chr1.2:75468692-75468711 None:intergenic 30.0%
GTTAGTAATGAAGAGTTTGA+CGG - chr1.2:75469362-75469381 MS.gene34479:intron 30.0%
GTTATATGAAAGAAGGAATG+AGG - chr1.2:75467989-75468008 MS.gene34479:intron 30.0%
GTTCTTAAACCATAATACTG+TGG - chr1.2:75468694-75468713 MS.gene34479:intron 30.0%
TCAACAATTTAAAGGGGTAA+TGG - chr1.2:75471414-75471433 MS.gene34479:intron 30.0%
TCCATTAATATCTTCTATGC+AGG - chr1.2:75470351-75470370 MS.gene34479:intron 30.0%
TCCTGCATAGAAGATATTAA+TGG + chr1.2:75470355-75470374 None:intergenic 30.0%
TGATTGATGAAAGAGTAAGA+GGG + chr1.2:75467440-75467459 None:intergenic 30.0%
TGCATTCTGTATACTGTATT+TGG - chr1.2:75468776-75468795 MS.gene34479:intron 30.0%
TGTACAAATGGATAGATAGA+GGG + chr1.2:75468662-75468681 None:intergenic 30.0%
TGTAGGCATATCCTTAAAAA+AGG + chr1.2:75469585-75469604 None:intergenic 30.0%
TGTTGATCTTACTTTCTTGT+TGG - chr1.2:75468482-75468501 MS.gene34479:CDS 30.0%
TTAAACCATCAAGAAAGAAC+TGG + chr1.2:75468239-75468258 None:intergenic 30.0%
TTGTACAAATGGATAGATAG+AGG + chr1.2:75468663-75468682 None:intergenic 30.0%
TTGTCATAGAGTTCAAACAA+TGG + chr1.2:75470457-75470476 None:intergenic 30.0%
! AAAGTACCCCAAAAGTTATA+TGG - chr1.2:75467683-75467702 MS.gene34479:intron 30.0%
! AAATGTTAGTTTAGAGGTGA+AGG + chr1.2:75468737-75468756 None:intergenic 30.0%
! AAGGCACTAAAAAAGAGTAT+CGG + chr1.2:75467245-75467264 None:intergenic 30.0%
! AATTACATTTGAAGTTTGGG+GGG + chr1.2:75468072-75468091 None:intergenic 30.0%
! AATTTTATTCGATCGCTTCT+GGG - chr1.2:75466972-75466991 MS.gene34479:intron 30.0%
! ATATCATCGAAACAGGTTTT+AGG + chr1.2:75467384-75467403 None:intergenic 30.0%
! ATTTTGCGTATCCAATACTT+AGG - chr1.2:75471353-75471372 MS.gene34479:intron 30.0%
! CCCCTTTAAATTGTTGATAA+GGG + chr1.2:75471411-75471430 None:intergenic 30.0%
! CCTTTGTACTTGATTTGATA+TGG - chr1.2:75467183-75467202 MS.gene34479:intron 30.0%
! CTAACGATTTTCATGTGTTT+TGG + chr1.2:75467793-75467812 None:intergenic 30.0%
! CTATGTCTTTTCACATTTTG+CGG - chr1.2:75468145-75468164 MS.gene34479:intron 30.0%
! GATAATTTGTCTTGTAGACA+TGG - chr1.2:75467826-75467845 MS.gene34479:intron 30.0%
! GATCATTTTAAACTGGAATC+TGG + chr1.2:75470913-75470932 None:intergenic 30.0%
! TAATTTTATTCGATCGCTTC+TGG - chr1.2:75466971-75466990 MS.gene34479:intron 30.0%
! TATCATCGAAACAGGTTTTA+GGG + chr1.2:75467383-75467402 None:intergenic 30.0%
! TTGGTCATAGATTTCAGTTT+TGG - chr1.2:75470749-75470768 MS.gene34479:intron 30.0%
! TTTTTGGATACTGAGAATAG+TGG + chr1.2:75471767-75471786 None:intergenic 30.0%
!! ATTATGGGTTTGATTTGTTG+CGG - chr1.2:75471134-75471153 MS.gene34479:intron 30.0%
!!! GTTTTTTCTAAACTTGAAGG+AGG + chr1.2:75467410-75467429 None:intergenic 30.0%
AAAACAGAGAAACAGACCAT+GGG + chr1.2:75471245-75471264 None:intergenic 35.0%
AAAAGTTTCTGTTGTTGGTC+AGG + chr1.2:75470597-75470616 None:intergenic 35.0%
AACAGAAGTTGTGTTAGAAG+TGG + chr1.2:75467629-75467648 None:intergenic 35.0%
AAGTTTAGCATGAAACTGGT+TGG + chr1.2:75469690-75469709 None:intergenic 35.0%
AATCTCTTGATGGAAGTTTG+AGG + chr1.2:75467556-75467575 None:intergenic 35.0%
AATGAAGAGTTTGACGGTAT+GGG - chr1.2:75469368-75469387 MS.gene34479:intron 35.0%
AATGAATTTGAGCATCACAC+AGG + chr1.2:75467917-75467936 None:intergenic 35.0%
ACAGAAGTTGTGTTAGAAGT+GGG + chr1.2:75467628-75467647 None:intergenic 35.0%
AGAAAATTGACTAGCAAGCT+TGG - chr1.2:75470046-75470065 MS.gene34479:intron 35.0%
AGACACATAATATGAGACAG+AGG - chr1.2:75469149-75469168 MS.gene34479:intron 35.0%
AGTGTAAAAACTAAATGGCC+AGG + chr1.2:75469715-75469734 None:intergenic 35.0%
AGTTTAGCATGAAACTGGTT+GGG + chr1.2:75469689-75469708 None:intergenic 35.0%
ATAATGCTACAATGGATGAG+TGG + chr1.2:75468451-75468470 None:intergenic 35.0%
ATTCCCATCACAAATTACCT+TGG + chr1.2:75470278-75470297 None:intergenic 35.0%
ATTTATCTGAATTGAAGGGC+TGG - chr1.2:75468806-75468825 MS.gene34479:CDS 35.0%
CATGGGTCAAATTGTACAAA+TGG + chr1.2:75468674-75468693 None:intergenic 35.0%
CATTTGGATCGGTTAAATGA+AGG + chr1.2:75467264-75467283 None:intergenic 35.0%
CATTTGTACAATTTGACCCA+TGG - chr1.2:75468672-75468691 MS.gene34479:CDS 35.0%
CCAGTCTATGCAATGATAAT+AGG + chr1.2:75471040-75471059 None:intergenic 35.0%
CCCGTATTAATAGTAGTTAG+TGG - chr1.2:75469013-75469032 MS.gene34479:intron 35.0%
CCTATTATCATTGCATAGAC+TGG - chr1.2:75471037-75471056 MS.gene34479:intron 35.0%
CCTTGTTCACTTATCTGAAA+GGG - chr1.2:75470390-75470409 MS.gene34479:intron 35.0%
CTAAAATATCACAGGAAGGA+GGG + chr1.2:75471740-75471759 None:intergenic 35.0%
CTAAGGTAACCTTCACAATA+AGG - chr1.2:75469235-75469254 MS.gene34479:intron 35.0%
CTCTACAGAAATAATAGGAC+AGG + chr1.2:75469763-75469782 None:intergenic 35.0%
CTTATTGTGAAGGTTACCTT+AGG + chr1.2:75469237-75469256 None:intergenic 35.0%
GACACATAATATGAGACAGA+GGG - chr1.2:75469150-75469169 MS.gene34479:intron 35.0%
TAAAATATCACAGGAAGGAG+GGG + chr1.2:75471739-75471758 None:intergenic 35.0%
TAAAGCATAAAGCTGAGACA+TGG + chr1.2:75469817-75469836 None:intergenic 35.0%
TAACTCCAGTTCTTTCTTGA+TGG - chr1.2:75468231-75468250 MS.gene34479:intron 35.0%
TAAGCATACACCAATAGAAC+TGG + chr1.2:75470326-75470345 None:intergenic 35.0%
TAATGAAGAGTTTGACGGTA+TGG - chr1.2:75469367-75469386 MS.gene34479:intron 35.0%
TATGTGTTTACTACCTGAGA+GGG + chr1.2:75466801-75466820 None:intergenic 35.0%
TCACCTAAAATATCACAGGA+AGG + chr1.2:75471744-75471763 None:intergenic 35.0%
TCCTCATATAACAAAACCCA+AGG - chr1.2:75470258-75470277 MS.gene34479:intron 35.0%
TCCTTGTTCACTTATCTGAA+AGG - chr1.2:75470389-75470408 MS.gene34479:intron 35.0%
TCTATGACAATGTTCAGGTA+CGG - chr1.2:75470467-75470486 MS.gene34479:intron 35.0%
TCTTGTATTGCCAGTTCTAT+TGG - chr1.2:75470313-75470332 MS.gene34479:intron 35.0%
TGAACTCTATGACAATGTTC+AGG - chr1.2:75470462-75470481 MS.gene34479:intron 35.0%
TGCAAGCATCTCATTTAAGT+TGG - chr1.2:75468921-75468940 MS.gene34479:intron 35.0%
TTCCCATCACAAATTACCTT+GGG + chr1.2:75470277-75470296 None:intergenic 35.0%
TTGCCCCAAAGTTTATCTAT+AGG - chr1.2:75468553-75468572 MS.gene34479:intron 35.0%
! AAACCCAAGGTAATTTGTGA+TGG - chr1.2:75470271-75470290 MS.gene34479:intron 35.0%
! AACCCAAGGTAATTTGTGAT+GGG - chr1.2:75470272-75470291 MS.gene34479:intron 35.0%
! AACTGGTTGGGTTTGTTTAA+AGG + chr1.2:75469677-75469696 None:intergenic 35.0%
! ACTGGTTGGGTTTGTTTAAA+GGG + chr1.2:75469676-75469695 None:intergenic 35.0%
! ATATCCTTAAAAAAGGGCGT+GGG + chr1.2:75469578-75469597 None:intergenic 35.0%
! GCAAGCATCTCATTTAAGTT+GGG - chr1.2:75468922-75468941 MS.gene34479:intron 35.0%
! TAAAGGGGAGTTTTCCATTA+TGG + chr1.2:75469660-75469679 None:intergenic 35.0%
! TCATATGTGTTGTTGCTGTT+AGG - chr1.2:75467288-75467307 MS.gene34479:intron 35.0%
! TTGCTCAAGTTGCCAAATAT+CGG - chr1.2:75471263-75471282 MS.gene34479:intron 35.0%
! TTTTCACATTTTGCGGAATC+AGG - chr1.2:75468152-75468171 MS.gene34479:intron 35.0%
!! AAATGGATTACTAGATGTGC+TGG + chr1.2:75469214-75469233 None:intergenic 35.0%
!! GTTTCAACTTCAGCTTTTTC+AGG + chr1.2:75471197-75471216 None:intergenic 35.0%
!!! ACCTTGGGTTTTGTTATATG+AGG + chr1.2:75470262-75470281 None:intergenic 35.0%
!!! AGCAAGCAGTTTCAAGTTTT+TGG + chr1.2:75470431-75470450 None:intergenic 35.0%
!!! GCAAGCAGTTTCAAGTTTTT+GGG + chr1.2:75470430-75470449 None:intergenic 35.0%
!!! TTGGGTTTTGTTATATGAGG+AGG + chr1.2:75470259-75470278 None:intergenic 35.0%
AAAATATCACAGGAAGGAGG+GGG + chr1.2:75471738-75471757 None:intergenic 40.0%
AAGACTCTCCCTCTCAAAAT+GGG + chr1.2:75469493-75469512 None:intergenic 40.0%
AAGTTGTGTTAGAAGTGGGA+TGG + chr1.2:75467624-75467643 None:intergenic 40.0%
ACAATGTTCAGGTACGGTTA+CGG - chr1.2:75470473-75470492 MS.gene34479:intron 40.0%
ACCCACAAGTTTGAATCCTA+TGG - chr1.2:75468627-75468646 MS.gene34479:CDS 40.0%
AGCAACAGCTTCCTAAGTAT+TGG + chr1.2:75471367-75471386 None:intergenic 40.0%
AGCATCTACGCTTCCAATTA+CGG + chr1.2:75470950-75470969 None:intergenic 40.0%
AGCCATAGGATTCAAACTTG+TGG + chr1.2:75468632-75468651 None:intergenic 40.0%
AGTTAGTGGAGTAGTTAGCT+GGG - chr1.2:75469027-75469046 MS.gene34479:intron 40.0%
ATACACAGAATCTTGAGGGA+AGG + chr1.2:75469792-75469811 None:intergenic 40.0%
CAAAACAGAGAAACAGACCA+TGG + chr1.2:75471246-75471265 None:intergenic 40.0%
CAAACTTGTGGGTGAAATAG+AGG + chr1.2:75468620-75468639 None:intergenic 40.0%
CAACACATATGAGCAGCATT+TGG + chr1.2:75467280-75467299 None:intergenic 40.0%
CATATCCTTAAAAAAGGGCG+TGG + chr1.2:75469579-75469598 None:intergenic 40.0%
CATATGAGCAGCATTTGGAT+CGG + chr1.2:75467275-75467294 None:intergenic 40.0%
CCCTTTCAGATAAGTGAACA+AGG + chr1.2:75470393-75470412 None:intergenic 40.0%
CCTAAAATATCACAGGAAGG+AGG + chr1.2:75471741-75471760 None:intergenic 40.0%
CTTGATGGAAGTTTGAGGAA+CGG + chr1.2:75467551-75467570 None:intergenic 40.0%
GACATAGATGGTTGTGTATC+AGG + chr1.2:75468132-75468151 None:intergenic 40.0%
GCCATAGGATTCAAACTTGT+GGG + chr1.2:75468631-75468650 None:intergenic 40.0%
GGAATTGTAAGATGAGGAGA+TGG - chr1.2:75471284-75471303 MS.gene34479:intron 40.0%
GGACAAGTTTAGCATGAAAC+TGG + chr1.2:75469694-75469713 None:intergenic 40.0%
GGCAATACACAGAATCTTGA+GGG + chr1.2:75469796-75469815 None:intergenic 40.0%
GTATGTGTTTACTACCTGAG+AGG + chr1.2:75466802-75466821 None:intergenic 40.0%
GTGAAGGTTACCTTAGGAAA+TGG + chr1.2:75469231-75469250 None:intergenic 40.0%
GTGGTCACACTAGACAAAAT+AGG + chr1.2:75468432-75468451 None:intergenic 40.0%
GTGGTCACCTAAAATATCAC+AGG + chr1.2:75471748-75471767 None:intergenic 40.0%
GTTATATGAGGAGGACAGTA+TGG + chr1.2:75470250-75470269 None:intergenic 40.0%
GTTTCATGCTAAACTTGTCC+TGG - chr1.2:75469694-75469713 MS.gene34479:intron 40.0%
TAGGTGAATGTGTTGCAATC+TGG - chr1.2:75470194-75470213 MS.gene34479:intron 40.0%
TAGTTAGTGGAGTAGTTAGC+TGG - chr1.2:75469026-75469045 MS.gene34479:intron 40.0%
TCATGAATGTACCAAACGCA+CGG + chr1.2:75471905-75471924 None:intergenic 40.0%
TGAAGTTGAAACCAACACGA+TGG - chr1.2:75471205-75471224 MS.gene34479:intron 40.0%
TGGCAATACACAGAATCTTG+AGG + chr1.2:75469797-75469816 None:intergenic 40.0%
TGTTTGCATGCACTTATCCT+TGG - chr1.2:75470160-75470179 MS.gene34479:intron 40.0%
TTAAAGTTGCATGCTAGGAG+AGG + chr1.2:75468880-75468899 None:intergenic 40.0%
! AACACATTTTGCAAACTCCC+AGG - chr1.2:75469891-75469910 MS.gene34479:intron 40.0%
! ACTAAGGCTCCCATTGTTTT+GGG + chr1.2:75469542-75469561 None:intergenic 40.0%
! AGAAGCATGTGTAGCTCATA+TGG + chr1.2:75468302-75468321 None:intergenic 40.0%
! ATTGGGAATTGGGGTTTTCT+AGG + chr1.2:75467016-75467035 None:intergenic 40.0%
! CAGAATGCAAGTTTTGCAAG+AGG + chr1.2:75468765-75468784 None:intergenic 40.0%
! CCTCCTTCCTGTGATATTTT+AGG - chr1.2:75471738-75471757 MS.gene34479:intron 40.0%
! CTGGTTGGGTTTGTTTAAAG+GGG + chr1.2:75469675-75469694 None:intergenic 40.0%
! GAGGTATCTTTCTCCATCTT+AGG + chr1.2:75466858-75466877 None:intergenic 40.0%
! GTTAGTTTAGAGGTGAAGGT+TGG + chr1.2:75468733-75468752 None:intergenic 40.0%
! TACGAGTTGTTTCCCATCTT+GGG + chr1.2:75471167-75471186 None:intergenic 40.0%
! TACTAAGGCTCCCATTGTTT+TGG + chr1.2:75469543-75469562 None:intergenic 40.0%
! TGTTTGATGGGTACAAGGAA+AGG + chr1.2:75471680-75471699 None:intergenic 40.0%
! TTCAATGAAGCAGCTGGTTT+AGG - chr1.2:75467483-75467502 MS.gene34479:CDS 40.0%
! TTGGGAATTGGGGTTTTCTA+GGG + chr1.2:75467015-75467034 None:intergenic 40.0%
!! TGAGGAATAGTGGATATGAC+TGG + chr1.2:75470882-75470901 None:intergenic 40.0%
!!! TGGGGTTTTCTAGGGTTTTA+GGG + chr1.2:75467007-75467026 None:intergenic 40.0%
!!! TTGGGGTTTTCTAGGGTTTT+AGG + chr1.2:75467008-75467027 None:intergenic 40.0%
AAATATCACAGGAAGGAGGG+GGG + chr1.2:75471737-75471756 None:intergenic 45.0%
AAGATCTTACCATTCTCCCC+TGG + chr1.2:75469930-75469949 None:intergenic 45.0%
AAGTTTGAGGAACGGCAACT+GGG + chr1.2:75467543-75467562 None:intergenic 45.0%
AATGTGTTGCAATCTGGTGG+AGG - chr1.2:75470200-75470219 MS.gene34479:intron 45.0%
AGTGATAGCAAAACCAGCCA+TGG + chr1.2:75467516-75467535 None:intergenic 45.0%
ATCCTTGGCATCTTGCAGAT+AGG - chr1.2:75470175-75470194 MS.gene34479:intron 45.0%
CAAGACTCTCCCTCTCAAAA+TGG + chr1.2:75469494-75469513 None:intergenic 45.0%
CAAGATGGGAAACAACTCGT+AGG - chr1.2:75471166-75471185 MS.gene34479:intron 45.0%
CAGTAAAATTCCTTCCACGC+TGG + chr1.2:75468016-75468035 None:intergenic 45.0%
CCATTATCGAGCTACACCTT+CGG - chr1.2:75466822-75466841 MS.gene34479:CDS 45.0%
CTAACTGACCTGACCGTAAT+TGG - chr1.2:75470934-75470953 MS.gene34479:intron 45.0%
GAGGACGATATCATCGAAAC+AGG + chr1.2:75467391-75467410 None:intergenic 45.0%
GCTGGGTTGCAATGCAATAA+AGG - chr1.2:75469044-75469063 MS.gene34479:intron 45.0%
GGAAAGTTGCTGAGGAATAG+TGG + chr1.2:75470892-75470911 None:intergenic 45.0%
GTAAGATGAGGAGATGGACA+TGG - chr1.2:75471290-75471309 MS.gene34479:intron 45.0%
GTGAATGTGTTGCAATCTGG+TGG - chr1.2:75470197-75470216 MS.gene34479:intron 45.0%
TGAGGTTTGGGGAGGATTAA+AGG + chr1.2:75469435-75469454 None:intergenic 45.0%
TGCGGTTATCAACCCAAGAT+GGG - chr1.2:75471152-75471171 MS.gene34479:intron 45.0%
TGGAATCTGGAAAGTTGCTG+AGG + chr1.2:75470900-75470919 None:intergenic 45.0%
TGTAATCATACCTGCCAGTC+AGG + chr1.2:75470094-75470113 None:intergenic 45.0%
TGTGCCAGTGATTGTGTGAA+GGG + chr1.2:75471706-75471725 None:intergenic 45.0%
TGTGTTAGAAGTGGGATGGT+TGG + chr1.2:75467620-75467639 None:intergenic 45.0%
TTGCGGTTATCAACCCAAGA+TGG - chr1.2:75471151-75471170 MS.gene34479:intron 45.0%
TTTGAGCATCACACAGGACA+AGG + chr1.2:75467911-75467930 None:intergenic 45.0%
! ACATTTGAAGTTTGGGGGGA+GGG + chr1.2:75468068-75468087 None:intergenic 45.0%
! ACATTTTGCAAACTCCCAGG+CGG - chr1.2:75469894-75469913 MS.gene34479:intron 45.0%
! AGGGGAGTTTTCCATTATGG+CGG + chr1.2:75469657-75469676 None:intergenic 45.0%
! ATTGGAAGCGTAGATGCTGA+TGG - chr1.2:75470952-75470971 MS.gene34479:intron 45.0%
! CAGCGTGGAAGGAATTTTAC+TGG - chr1.2:75468014-75468033 MS.gene34479:intron 45.0%
! CGAAGGTGTAGCTCGATAAT+GGG + chr1.2:75466824-75466843 None:intergenic 45.0%
! CTACGAGTTGTTTCCCATCT+TGG + chr1.2:75471168-75471187 None:intergenic 45.0%
! TACATTTGAAGTTTGGGGGG+AGG + chr1.2:75468069-75468088 None:intergenic 45.0%
! TCTGGTTTCAATGAAGCAGC+TGG - chr1.2:75467477-75467496 MS.gene34479:CDS 45.0%
! TGTGAAGGGGTGTGTTTGAT+GGG + chr1.2:75471692-75471711 None:intergenic 45.0%
!! AAGCTTGGTGCTAATTCACC+CGG - chr1.2:75470061-75470080 MS.gene34479:intron 45.0%
!! CATTTTGAGAGGGAGAGTCT+TGG - chr1.2:75469492-75469511 MS.gene34479:intron 45.0%
!! AAAAAAAAAAAAAAAATCAT+AGG + chr1.2:75470831-75470850 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTCAA+GGG - chr1.2:75470614-75470633 MS.gene34479:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTCA+AGG - chr1.2:75470613-75470632 MS.gene34479:intron 5.0%
ACACCCCTTCACACAATCAC+TGG - chr1.2:75471699-75471718 MS.gene34479:intron 50.0%
ACATAAGGCTCTCGCTACTG+AGG + chr1.2:75469453-75469472 None:intergenic 50.0%
ACTCTCCCTCTCAAAATGGG+CGG + chr1.2:75469490-75469509 None:intergenic 50.0%
AGGGAGCTGTGCGGAATTTA+TGG - chr1.2:75469301-75469320 MS.gene34479:intron 50.0%
ATACCTGCCAGTCAGGTACA+AGG + chr1.2:75470087-75470106 None:intergenic 50.0%
CACCTATCTGCAAGATGCCA+AGG + chr1.2:75470180-75470199 None:intergenic 50.0%
CTACGCTTCCAATTACGGTC+AGG + chr1.2:75470945-75470964 None:intergenic 50.0%
CTGGTTTAGGCGTTTAGCCA+TGG - chr1.2:75467496-75467515 MS.gene34479:CDS 50.0%
GAAGTTTGAGGAACGGCAAC+TGG + chr1.2:75467544-75467563 None:intergenic 50.0%
GCAGTGCGGCACAATACATA+AGG + chr1.2:75469468-75469487 None:intergenic 50.0%
GCCTACAGAATCCAGTTGCA+CGG - chr1.2:75469598-75469617 MS.gene34479:intron 50.0%
GCGATAGTCATCCATCGTGT+TGG + chr1.2:75471219-75471238 None:intergenic 50.0%
GCTCAGCTTCAGCTTCTACA+TGG - chr1.2:75471879-75471898 MS.gene34479:CDS 50.0%
GGGAGGGTAGTCAAGTACTA+AGG + chr1.2:75469558-75469577 None:intergenic 50.0%
GTGCCAGTGATTGTGTGAAG+GGG + chr1.2:75471705-75471724 None:intergenic 50.0%
GTGTGCCAGTGATTGTGTGA+AGG + chr1.2:75471707-75471726 None:intergenic 50.0%
TAGAAGCTGAAGCTGAGCCT+TGG + chr1.2:75471877-75471896 None:intergenic 50.0%
TAGAGGGAGATGTCAGCCAT+AGG + chr1.2:75468646-75468665 None:intergenic 50.0%
TCCGTGCAACTGGATTCTGT+AGG + chr1.2:75469602-75469621 None:intergenic 50.0%
TGGGAGGCTTGAGCATATGT+GGG + chr1.2:75468335-75468354 None:intergenic 50.0%
TTAGAAGTGGGATGGTTGGC+TGG + chr1.2:75467616-75467635 None:intergenic 50.0%
TTCCCCCAGCCCAAAACAAT+GGG - chr1.2:75469530-75469549 MS.gene34479:intron 50.0%
TTGGGAGGCTTGAGCATATG+TGG + chr1.2:75468336-75468355 None:intergenic 50.0%
TTTAGGCGTTTAGCCATGGC+TGG - chr1.2:75467500-75467519 MS.gene34479:CDS 50.0%
! ACATCGGAGTGCTTTGGACA+AGG + chr1.2:75471849-75471868 None:intergenic 50.0%
! CATTTGAAGTTTGGGGGGAG+GGG + chr1.2:75468067-75468086 None:intergenic 50.0%
! CCGAAGGTGTAGCTCGATAA+TGG + chr1.2:75466825-75466844 None:intergenic 50.0%
! CCTTAAAAAAGGGCGTGGGA+GGG + chr1.2:75469574-75469593 None:intergenic 50.0%
! GGGTGTGTTTGATGGGTACA+AGG + chr1.2:75471685-75471704 None:intergenic 50.0%
! GTGTGAAGGGGTGTGTTTGA+TGG + chr1.2:75471693-75471712 None:intergenic 50.0%
! GTTTGTTGAAGGGAGCTGTG+CGG - chr1.2:75469292-75469311 MS.gene34479:intron 50.0%
! TCCTTAAAAAAGGGCGTGGG+AGG + chr1.2:75469575-75469594 None:intergenic 50.0%
! TTGTCCAAAGCACTCCGATG+TGG - chr1.2:75471848-75471867 MS.gene34479:CDS 50.0%
ACGAGCAAGACGATCAGCGA+CGG + chr1.2:75466880-75466899 None:intergenic 55.0%
AGAAGGAATGAGGACCAGCG+TGG - chr1.2:75467999-75468018 MS.gene34479:intron 55.0%
AGGCTCTCGCTACTGAGGTT+TGG + chr1.2:75469448-75469467 None:intergenic 55.0%
CGGCACTAAGGAGCCTAAGA+TGG - chr1.2:75466842-75466861 MS.gene34479:CDS 55.0%
CTGAGCCTTGGCTTCCACAT+CGG + chr1.2:75471865-75471884 None:intergenic 55.0%
CTTCCCCCAGCCCAAAACAA+TGG - chr1.2:75469529-75469548 MS.gene34479:intron 55.0%
CTTCTACATGGCCGTGCGTT+TGG - chr1.2:75471891-75471910 MS.gene34479:CDS 55.0%
GAGCTACACCTTCGGCACTA+AGG - chr1.2:75466830-75466849 MS.gene34479:CDS 55.0%
GCTCTCGCTACTGAGGTTTG+GGG + chr1.2:75469446-75469465 None:intergenic 55.0%
GGATGACTATCGCGATCCCA+TGG - chr1.2:75471226-75471245 MS.gene34479:intron 55.0%
GGCTCTCGCTACTGAGGTTT+GGG + chr1.2:75469447-75469466 None:intergenic 55.0%
GGGAGGCTTGAGCATATGTG+GGG + chr1.2:75468334-75468353 None:intergenic 55.0%
GTTGCATGCTAGGAGAGGAC+TGG + chr1.2:75468875-75468894 None:intergenic 55.0%
TCTCAAAATGGGCGGCAGTG+CGG + chr1.2:75469482-75469501 None:intergenic 55.0%
TGTTCTGGTCTCCGTGCAAC+TGG + chr1.2:75469612-75469631 None:intergenic 55.0%
! ATGGTTGGCTGGCTATCTGG+GGG + chr1.2:75467605-75467624 None:intergenic 55.0%
! CATTCTCCCCTGGCTTGAGA+CGG + chr1.2:75469920-75469939 None:intergenic 55.0%
! CTTAGGCTCCTTAGTGCCGA+AGG + chr1.2:75466841-75466860 None:intergenic 55.0%
! GATGGTTGGCTGGCTATCTG+GGG + chr1.2:75467606-75467625 None:intergenic 55.0%
! GCTTCCACATCGGAGTGCTT+TGG + chr1.2:75471855-75471874 None:intergenic 55.0%
! GGATGGTTGGCTGGCTATCT+GGG + chr1.2:75467607-75467626 None:intergenic 55.0%
!! CACTGCCGCCCATTTTGAGA+GGG - chr1.2:75469482-75469501 MS.gene34479:intron 55.0%
!!! AGGCTCCCATTGTTTTGGGC+TGG + chr1.2:75469538-75469557 None:intergenic 55.0%
!!! CCCTCCCACGCCCTTTTTTA+AGG - chr1.2:75469571-75469590 MS.gene34479:intron 55.0%
!!! CTCCCATTGTTTTGGGCTGG+GGG + chr1.2:75469535-75469554 None:intergenic 55.0%
!!! GCTCCCATTGTTTTGGGCTG+GGG + chr1.2:75469536-75469555 None:intergenic 55.0%
!!! GGCTCCCATTGTTTTGGGCT+GGG + chr1.2:75469537-75469556 None:intergenic 55.0%
ACCAGAACAGCCCCACCTGT+TGG - chr1.2:75469623-75469642 MS.gene34479:intron 60.0%
AGCAAGACGATCAGCGACGG+AGG + chr1.2:75466877-75466896 None:intergenic 60.0%
CCAGAACAGCCCCACCTGTT+GGG - chr1.2:75469624-75469643 MS.gene34479:intron 60.0%
CGTCTCAAGCCAGGGGAGAA+TGG - chr1.2:75469918-75469937 MS.gene34479:intron 60.0%
CTCGCTACTGAGGTTTGGGG+AGG + chr1.2:75469443-75469462 None:intergenic 60.0%
CTGCCAGTCAGGTACAAGGC+CGG + chr1.2:75470083-75470102 None:intergenic 60.0%
GCACTCCGATGTGGAAGCCA+AGG - chr1.2:75471857-75471876 MS.gene34479:CDS 60.0%
GGAATGAGGACCAGCGTGGA+AGG - chr1.2:75468003-75468022 MS.gene34479:intron 60.0%
TGCCAGTCAGGTACAAGGCC+GGG + chr1.2:75470082-75470101 None:intergenic 60.0%
TGGGAGTGGGTCCGCCATAA+TGG - chr1.2:75469643-75469662 MS.gene34479:intron 60.0%
! GCACTGCCGCCCATTTTGAG+AGG - chr1.2:75469481-75469500 MS.gene34479:intron 60.0%
! GGGATGGTTGGCTGGCTATC+TGG + chr1.2:75467608-75467627 None:intergenic 60.0%
ACAGCCCCACCTGTTGGGAG+TGG - chr1.2:75469629-75469648 MS.gene34479:intron 65.0%
ACAGGAAGGAGGGGGGCTGA+TGG + chr1.2:75471730-75471749 None:intergenic 65.0%
CAGCCCCACCTGTTGGGAGT+GGG - chr1.2:75469630-75469649 MS.gene34479:intron 65.0%
CAGGAAGGAGGGGGGCTGAT+GGG + chr1.2:75471729-75471748 None:intergenic 65.0%
CCCAACAGGTGGGGCTGTTC+TGG + chr1.2:75469627-75469646 None:intergenic 65.0%
CGGACCCACTCCCAACAGGT+GGG + chr1.2:75469637-75469656 None:intergenic 65.0%
GGACCCACTCCCAACAGGTG+GGG + chr1.2:75469636-75469655 None:intergenic 65.0%
! CACCCGGCCTTGTACCTGAC+TGG - chr1.2:75470077-75470096 MS.gene34479:intron 65.0%
! CGGCCTTGTACCTGACTGGC+AGG - chr1.2:75470081-75470100 MS.gene34479:intron 65.0%
!! ATGGCGGACCCACTCCCAAC+AGG + chr1.2:75469641-75469660 None:intergenic 65.0%
AGGCGGCCGTCTCAAGCCAG+GGG - chr1.2:75469911-75469930 MS.gene34479:intron 70.0%
CAGGCGGCCGTCTCAAGCCA+GGG - chr1.2:75469910-75469929 MS.gene34479:intron 70.0%
GCGGACCCACTCCCAACAGG+TGG + chr1.2:75469638-75469657 None:intergenic 70.0%
! CTGGCTTGAGACGGCCGCCT+GGG + chr1.2:75469911-75469930 None:intergenic 70.0%
CCAGGCGGCCGTCTCAAGCC+AGG - chr1.2:75469909-75469928 MS.gene34479:intron 75.0%
! CCTGGCTTGAGACGGCCGCC+TGG + chr1.2:75469912-75469931 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 75466792 75471929 75466792 ID=MS.gene34479
chr1.2 mRNA 75466792 75471929 75466792 ID=MS.gene34479.t1;Parent=MS.gene34479
chr1.2 exon 75471811 75471929 75471811 ID=MS.gene34479.t1.exon1;Parent=MS.gene34479.t1
chr1.2 CDS 75471811 75471929 75471811 ID=cds.MS.gene34479.t1;Parent=MS.gene34479.t1
chr1.2 exon 75470686 75470731 75470686 ID=MS.gene34479.t1.exon2;Parent=MS.gene34479.t1
chr1.2 CDS 75470686 75470731 75470686 ID=cds.MS.gene34479.t1;Parent=MS.gene34479.t1
chr1.2 exon 75468782 75468875 75468782 ID=MS.gene34479.t1.exon3;Parent=MS.gene34479.t1
chr1.2 CDS 75468782 75468875 75468782 ID=cds.MS.gene34479.t1;Parent=MS.gene34479.t1
chr1.2 exon 75468619 75468692 75468619 ID=MS.gene34479.t1.exon4;Parent=MS.gene34479.t1
chr1.2 CDS 75468619 75468692 75468619 ID=cds.MS.gene34479.t1;Parent=MS.gene34479.t1
chr1.2 exon 75468442 75468528 75468442 ID=MS.gene34479.t1.exon5;Parent=MS.gene34479.t1
chr1.2 CDS 75468442 75468528 75468442 ID=cds.MS.gene34479.t1;Parent=MS.gene34479.t1
chr1.2 exon 75468238 75468348 75468238 ID=MS.gene34479.t1.exon6;Parent=MS.gene34479.t1
chr1.2 CDS 75468238 75468348 75468238 ID=cds.MS.gene34479.t1;Parent=MS.gene34479.t1
chr1.2 exon 75467432 75467533 75467432 ID=MS.gene34479.t1.exon7;Parent=MS.gene34479.t1
chr1.2 CDS 75467432 75467533 75467432 ID=cds.MS.gene34479.t1;Parent=MS.gene34479.t1
chr1.2 exon 75466792 75466863 75466792 ID=MS.gene34479.t1.exon8;Parent=MS.gene34479.t1
chr1.2 CDS 75466792 75466863 75466792 ID=cds.MS.gene34479.t1;Parent=MS.gene34479.t1
Gene Sequence

>MS.gene34479

ATGATACCCTCTCAGGTAGTAAACACATACCCATTATCGAGCTACACCTTCGGCACTAAGGAGCCTAAGATGGAGAAAGATACCTCCGTCGCTGATCGTCTTGCTCGTATGAAAGTCAAGTCAGTATCTTTCTTCCCTCTTTTACTTCTCTTATTGTTTTTCATTATTACCCTTTTGATTAATTTTATTCGATCGCTTCTGGGTTATATCAACCCTAAAACCCTAGAAAACCCCAATTCCCAATTTTACTAATACTCTACTGTTTTAAGTTAAAGCAAAGATTTTTCATTTGATTTTGCCCTATAATATATTGTTTATGTAAAAATTAATAGAAAAATTGATTTTATTCACTGTATGAGCTGATCAAGAACTGCAAGAATGAAAGCTTCTACCTTTGTACTTGATTTGATATGGGTAGCATACATATTAAAAACTGCATTTTTTAAGTCTCCGATACTCTTTTTTAGTGCCTTCATTTAACCGATCCAAATGCTGCTCATATGTGTTGTTGCTGTTAGGCAAATTTTTTTTTTTTTTTTTGAAGAAATGTGTTACACAAAACAAGGTGTTACTATGAACTCACAATGTCCCTAAAACCTGTTTCGATGATATCGTCCTCCTTCAAGTTTAGAAAAAACTGTGGCTCCCTCTTACTCTTTCATCAATCATAGGTATTCAGAAATTTTCTGGTTTCAATGAAGCAGCTGGTTTAGGCGTTTAGCCATGGCTGGTTTTGCTATCACTGTCGCCCAGTTGCCGTTCCTCAAACTTCCATCAAGAGATTTAGTTTCTTGAAATTAACTATGATCTCCCCCAGATAGCCAGCCAACCATCCCACTTCTAACACAACTTCTGTTCTTACTAGCTCAAAATTAGTAGATTTCATGTTCAAAAGTACCCCAAAAGTTATATGGCTTTATTTTTTGTACACCATATACACATTGAGTTTGTCTTTTATACTCAAACAGCCAATATAAACATTTTATATGACAATACAACCAAAACACATGAAAATCGTTAGTTTGAATTTGATTGATAATTTGTCTTGTAGACATGGTTTTGAATTTCAAGTACTCTTTTGATTGAATTTCCTCTCATATAATCTTTTTACTTGTTCCTTGTCCTGTGTGATGCTCAAATTCATTATATACTCAAATGGTTCTGGAATATAACAATTTCTTTTGTTTCCAAACTTCAGTTATATGAAAGAAGGAATGAGGACCAGCGTGGAAGGAATTTTACTGGTATGTTTACTGATTGCTCTTTTTCACTCCCCTCCCCCCAAACTTCAAATGTAATTTTATCACAAATAATTATATTCATTTTTTAATTTCATTCCTGATACACAACCATCTATGTCTTTTCACATTTTGCGGAATCAGGTACATACAATAATGTCGTATTATCTTGTCACGAGTCATATCTAAAAATAGATCATTTAACTCCAGTTCTTTCTTGATGGTTTAAACTTCTAGCTTTCCTCTACTTCTAATTAAAGGGATATCATCCATATGAGCTACACATGCTTCTACGAGCTTTCCCCACATATGCTCAAGCCTCCCAATACAAAATTTTATCATATTTTCTACAGTACGAGTACGAGTTGCCTCTACCTTTTTTAATGATGTAATCTTAATCCTATTTTGTCTAGTGTGACCACTCATCCATTGTAGCATTATTATCTCTGCAATGTTGATCTTACTTTCTTGTTGGCTTTTTACTGCTCAACGTTCAATTTCATACATGACAAATCTTATCGCTTTGCCCCAAAGTTTATCTATAGGTTTGTACGGTAATTTTAATCACAAATTACATCCGAAATATTCCTCTATTTCACCCACAAGTTTGAATCCTATGGCTGACATCTCCCTCTATCTATCCATTTGTACAATTTGACCCATGGTTCTTAAACCATAATACTGTGGTATAGTATACTCTCCAACCTTCACCTCTAAACTAACATTTTTCTTCCTCTTGCAAAACTTGCATTCTGTATACTGTATTTGGTTTCTTCATTTATCTGAATTGAAGGGCTGGTGTTATATGCTCAATTTTATCATAACATATGTTGCATAGTTGTCCAGTCCTCTCCTAGCATGCAACTTTAATATATACGTTCTCTGTCTTATTGCAAGCATCTCATTTAAGTTGGGCACAATTCTTAAGAAAATGACTACTTGTGTTGATTTCAATGAGAAAATAAGTTTCATTTACTAAAATACCCGTATTAATAGTAGTTAGTGGAGTAGTTAGCTGGGTTGCAATGCAATAAAGGTATATTAGTGGAAAAAAGTGATTAATGTTTCATTTGTAATATAAAGAGACAAATAATATGAGACAAATAAGTATTGCAAATGAGACACATAATATGAGACAGAGGGAGTAGTACTTAGTTAACTAGATCTTTAAAATTTGCATTCCAGCACATCTAGTAATCCATTTCCTAAGGTAACCTTCACAATAAGGTAAATTGATAAATTTAGTATAGATTTATATTTTAGTTTGTTGAAGGGAGCTGTGCGGAATTTATGGAGCAAATATAGCTTGCAGTAAAATTATTAGTTGTTTTGGTTAGTAATGAAGAGTTTGACGGTATGGGCATCTATAATTCTATTTTAGATTGGATAGTGGTAGACTGTACCTTTAATCCTCCCCAAACCTCAGTAGCGAGAGCCTTATGTATTGTGCCGCACTGCCGCCCATTTTGAGAGGGAGAGTCTTGGTGCAGCAATAAGATCTTCCCCCAGCCCAAAACAATGGGAGCCTTAGTACTTGACTACCCTCCCACGCCCTTTTTTAAGGATATGCCTACAGAATCCAGTTGCACGGAGACCAGAACAGCCCCACCTGTTGGGAGTGGGTCCGCCATAATGGAAAACTCCCCTTTAAACAAACCCAACCAGTTTCATGCTAAACTTGTCCTGGCCATTTAGTTTTTACACTTTTTATTTTCTTGTTCCCATAATGTCCTGTCCTATTATTTCTGTAGAGAACATACCTTCCCTCAAGATTCTGTGTATTGCCATGTCTCAGCTTTATGCTTTATTTTTGTAGGTACAAGAACACAATCATCCTCATATTCTTCTTCTGCAAATCGGGAACACATTTTGCAAACTCCCAGGCGGCCGTCTCAAGCCAGGGGAGAATGGTAAGATCTTACTTCATTGCTCCGAATATGATAGTCTGCAAATAGCAACTAGTGACTATGCCAAATGTACTTTTTTTGTATGTTTACAGAAATTGAGGGCTTGAAGAGAAAATTGACTAGCAAGCTTGGTGCTAATTCACCCGGCCTTGTACCTGACTGGCAGGTATGATTACATGACTTTTAGATGTATGAACTCTCGAAAGTTTACTAGCAAGCTTATTGTTTGCATGCACTTATCCTTGGCATCTTGCAGATAGGTGAATGTGTTGCAATCTGGTGGAGGCCAAATTTTGAAACTATAATGTATCCATACTGTCCTCCTCATATAACAAAACCCAAGGTAATTTGTGATGGGAATATCATTGACTGAAACTCTTGTATTGCCAGTTCTATTGGTGTATGCTTACAACATCCATTAATATCTTCTATGCAGGAGTGCAAGAAGCTTTTCCTTGTTCACTTATCTGAAAGGGAATACTTTGCTGTACCCAAAAACTTGAAACTGCTTGCTGTTCCATTGTTTGAACTCTATGACAATGTTCAGGTACGGTTACGGTAATAATTATTATGATTTTTGTCTTATGTTACTCAGTTATAAACAAAATTCTTTATAATGAAGAGATTTAAAACGGCTATCATTAATTAATGAAAAAACCTGACCAACAACAGAAACTTTTTTTTTTTTTTTTTTCAAGGGAATCGTATAAAGTTTGATTTGAGAGATTATTGGGCTCATCTAAAATGTCCTTTTTTTTTTTATGGAAAAAAAAATGTTCTTTTGGCGCTTATTAGAACTTTTCATCTTATGATTGGTCATAGATTTCAGTTTTGGAACTTAATCACATTATTATGCTTGCCAGTCAAAATATGATAGTAATTTAATGCTGTCCTATGATTTTTTTTTTTTTTTTTTGTATCAATTAATTGCAGAGATATGGACCAGTCATATCCACTATTCCTCAGCAACTTTCCAGATTCCAGTTTAAAATGATCACTAACTGACCTGACCGTAATTGGAAGCGTAGATGCTGATGGAATACTGCTACTTCCATTTGTTATTTTAAGAATTAGGACTGGTTTGATACATTATTCTAAACCCTATTATCATTGCATAGACTGGTTAGAGAACTGAATTTTGAAGTGTGTTCCTAAAAAGATTTGTAATTTGTGACACTGTTTGTATTAATTCATTGGATTATGGGTTTGATTTGTTGCGGTTATCAACCCAAGATGGGAAACAACTCGTAGGCTAGACCTGAAAAAGCTGAAGTTGAAACCAACACGATGGATGACTATCGCGATCCCATGGTCTGTTTCTCTGTTTTGCTCAAGTTGCCAAATATCGGAATTGTAAGATGAGGAGATGGACATGGATTGATCATGACAAATTGTAGAAAGCTAATGTAAGACACAATTTTGCGTATCCAATACTTAGGAAGCTGTTGCTAGTCCAAAGACATTGTATAATCCCTTATCAACAATTTAAAGGGGTAATGGCACATACACATATACAATTAGGAAGCTGTTGCTAGTCCAAAGACATTGTATAATCCCTTATCAACAATTTAAAGGGGTAATGGCACATACACATATACAATTAGGAAGCTGTTGCTAGTCCAAAGACATTGTATAATCCCTTATCAACAATTTAAAGGGGTAATGGCACATACACATATACAATTCACTTTTAACTTTTCTATAACATGTCTTTTTAAATTTGCCTAAATATCAAAATTACCTTTCCTTGTACCCATCAAACACACCCCTTCACACAATCACTGGCACACCCATCAGCCCCCCTCCTTCCTGTGATATTTTAGGTGACCACTATTCTCAGTATCCAAAAAAATGAAAACTAACACATTGTAAATGTAGATGGTGAAATTTAATCTGTGAATGTTTGGAACCTTGTCCAAAGCACTCCGATGTGGAAGCCAAGGCTCAGCTTCAGCTTCTACATGGCCGTGCGTTTGGTACATTCATGATGTGA
Protein sequence

>MS.gene34479.t1

MIPSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHNHPHILLLQIGNTFCKLPGGRLKPGENEIEGLKRKLTSKLGANSPGLVPDWQIGECVAIWWRPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQARPEKAEVETNTMDDYRDPMVCFSVLLKLPNIGIHSDVEAKAQLQLLHGRAFGTFMM