Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35142.t1 | XP_013457346.1 | 96.7 | 307 | 10 | 0 | 1 | 307 | 1 | 307 | 2.50E-155 | 558.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35142.t1 | P51373 | 36.9 | 249 | 155 | 1 | 58 | 304 | 7 | 255 | 6.4e-43 | 176.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35142.t1 | I3SV46 | 96.7 | 307 | 10 | 0 | 1 | 307 | 1 | 307 | 1.8e-155 | 558.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04939 | MS.gene35142 | 0.806595 | 7.62E-50 | -1.69E-46 |
| MS.gene050699 | MS.gene35142 | 0.828889 | 6.99E-55 | -1.69E-46 |
| MS.gene050781 | MS.gene35142 | 0.804327 | 2.28E-49 | -1.69E-46 |
| MS.gene051336 | MS.gene35142 | 0.81533 | 9.77E-52 | -1.69E-46 |
| MS.gene052615 | MS.gene35142 | 0.811863 | 5.66E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene35142 | 0.803492 | 3.40E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene35142 | 0.801447 | 8.97E-49 | -1.69E-46 |
| MS.gene053915 | MS.gene35142 | 0.805212 | 1.49E-49 | -1.69E-46 |
| MS.gene058019 | MS.gene35142 | 0.823386 | 1.42E-53 | -1.69E-46 |
| MS.gene059756 | MS.gene35142 | 0.809645 | 1.71E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35142.t1 | MTR_4g094625 | 96.743 | 307 | 10 | 0 | 1 | 307 | 1 | 307 | 0.0 | 598 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAGGTTGCACCTAATA+AGG | 0.177647 | 4.4:-19463574 | None:intergenic |
| CCTACAAAGTCTGGTGTTCT+TGG | 0.228685 | 4.4:+19465542 | MS.gene35142:CDS |
| CTAATAAGGGGTTGTACTTA+TGG | 0.232864 | 4.4:-19463560 | None:intergenic |
| ATCCTTAAGGACAGATTCTT+TGG | 0.242936 | 4.4:-19463658 | None:intergenic |
| CATAAGTACAACCCCTTATT+AGG | 0.268805 | 4.4:+19463561 | MS.gene35142:CDS |
| GCTATCACTGCTGGAGCTTC+TGG | 0.287273 | 4.4:+19466177 | MS.gene35142:CDS |
| CCAAGAACACCAGACTTTGT+AGG | 0.348475 | 4.4:-19465542 | None:intergenic |
| TTTGAGGTTGCACCTAATAA+GGG | 0.363381 | 4.4:-19463573 | None:intergenic |
| TTGCATTGGCAGGTTGAGAT+TGG | 0.389554 | 4.4:+19464850 | MS.gene35142:intron |
| AAGGGGTTGTACTTATGGTT+TGG | 0.402149 | 4.4:-19463555 | None:intergenic |
| AGAAAGTGTTAGGCATGTTA+AGG | 0.406358 | 4.4:-19463505 | None:intergenic |
| AAATCACTCTTTACCTGCTC+TGG | 0.408496 | 4.4:-19464913 | None:intergenic |
| ATGCTGCATGTAACCTGATC+GGG | 0.408784 | 4.4:-19465361 | None:intergenic |
| AACCAAAGAATCTGTCCTTA+AGG | 0.412479 | 4.4:+19463656 | MS.gene35142:CDS |
| TGTTCCAATCCTACAAAGTC+TGG | 0.415836 | 4.4:+19465533 | MS.gene35142:CDS |
| ATACCTGTCATGTGTTCATC+CGG | 0.423217 | 4.4:+19466129 | MS.gene35142:CDS |
| TAATGCTCTAGTAGTAAAAC+AGG | 0.424552 | 4.4:-19463625 | None:intergenic |
| AAGAAGGAGAAGAAAGTGTT+AGG | 0.435183 | 4.4:-19463515 | None:intergenic |
| AACACCAGACTTTGTAGGAT+TGG | 0.437626 | 4.4:-19465537 | None:intergenic |
| TTTAGAGATGAGATTGAAGA+AGG | 0.438632 | 4.4:-19463531 | None:intergenic |
| AGTTGAAGCAGGAGCACTAA+TGG | 0.440355 | 4.4:+19464708 | MS.gene35142:CDS |
| ACTGCAGCTGGAAATGTTGT+AGG | 0.442568 | 4.4:-19464688 | None:intergenic |
| CACACTAAGCCTCCCCGATC+AGG | 0.470546 | 4.4:+19465348 | MS.gene35142:CDS |
| GCTTCTAACTTCAGCAATCA+TGG | 0.475487 | 4.4:-19466368 | None:intergenic |
| AGTTGTCACTGCCGCAGAAA+AGG | 0.478390 | 4.4:+19463854 | MS.gene35142:CDS |
| TTTCCAGCTGCAGTTGAAGC+AGG | 0.479631 | 4.4:+19464697 | MS.gene35142:CDS |
| TATCAGCCTAACTTCTTGTC+CGG | 0.480062 | 4.4:+19464416 | MS.gene35142:CDS |
| GCTCCTGCTTCAACTGCAGC+TGG | 0.485920 | 4.4:-19464700 | None:intergenic |
| TTCGTTCGCGAAAATCCTTA+AGG | 0.486671 | 4.4:-19463671 | None:intergenic |
| GCAGAGTCACTTGAACTAGA+AGG | 0.489558 | 4.4:+19465479 | MS.gene35142:CDS |
| ATAGCTAGCTTCACCAACTC+CGG | 0.493148 | 4.4:-19464396 | None:intergenic |
| GCACCTATGGCTATCACTGC+TGG | 0.498606 | 4.4:+19466168 | MS.gene35142:CDS |
| TGCTGTGACAGCACTTAGCC+CGG | 0.502968 | 4.4:-19466148 | None:intergenic |
| AAGTGCTGTCACAGCACCTA+TGG | 0.524433 | 4.4:+19466155 | MS.gene35142:CDS |
| AGGTAGTAGACATGGCTTTG+AGG | 0.531491 | 4.4:-19463589 | None:intergenic |
| GACACACACTACACATGAAG+TGG | 0.532067 | 4.4:+19466420 | MS.gene35142:CDS |
| AATATACCGGACAAGAAGTT+AGG | 0.532876 | 4.4:-19464422 | None:intergenic |
| TCGCGAACGAACAGCTCTCA+AGG | 0.543908 | 4.4:+19463683 | MS.gene35142:CDS |
| GAATATGCAGATGCTAAAGT+TGG | 0.547448 | 4.4:-19466087 | None:intergenic |
| TATAGCATGTGACCCGGAGT+TGG | 0.553762 | 4.4:+19464383 | MS.gene35142:CDS |
| GCTCCAGCAGTGATAGCCAT+AGG | 0.566389 | 4.4:-19466171 | None:intergenic |
| TGTTCTTGGTTTGATTGAGA+AGG | 0.574982 | 4.4:+19465556 | MS.gene35142:CDS |
| AATGCTGCATGTAACCTGAT+CGG | 0.576394 | 4.4:-19465362 | None:intergenic |
| TACCTGTCATGTGTTCATCC+GGG | 0.584674 | 4.4:+19466130 | MS.gene35142:CDS |
| TAGCTAGCTTCACCAACTCC+GGG | 0.587229 | 4.4:-19464395 | None:intergenic |
| TTGAGGTTGCACCTAATAAG+GGG | 0.592490 | 4.4:-19463572 | None:intergenic |
| GTGACAGACAAAACCACAGA+TGG | 0.596456 | 4.4:-19465316 | None:intergenic |
| AGCCCGGATGAACACATGAC+AGG | 0.601051 | 4.4:-19466132 | None:intergenic |
| GTAGATATTATTCAAACTGA+GGG | 0.601446 | 4.4:+19465503 | MS.gene35142:CDS |
| GATATTATTCAAACTGAGGG+AGG | 0.612806 | 4.4:+19465506 | MS.gene35142:CDS |
| CATGTGTAGTGTGTGTCGGA+AGG | 0.614667 | 4.4:-19466414 | None:intergenic |
| ATGTGTAGTGTGTGTCGGAA+GGG | 0.619185 | 4.4:-19466413 | None:intergenic |
| AAGGAGGATACTTCCATCTG+TGG | 0.621807 | 4.4:+19465303 | MS.gene35142:CDS |
| TGTAGATATTATTCAAACTG+AGG | 0.622046 | 4.4:+19465502 | MS.gene35142:CDS |
| ATTTCCAAATCACAGGGTGT+GGG | 0.629293 | 4.4:+19466313 | MS.gene35142:intron |
| ACTTCATGTGTAGTGTGTGT+CGG | 0.634907 | 4.4:-19466418 | None:intergenic |
| CGTCGATATAGCATGTGACC+CGG | 0.645562 | 4.4:+19464377 | MS.gene35142:CDS |
| TCGGGGAGGCTTAGTGTGTG+AGG | 0.656802 | 4.4:-19465343 | None:intergenic |
| GTCTAACAAAAGAGACAAGG+AGG | 0.671548 | 4.4:+19465287 | MS.gene35142:CDS |
| TGCTGCATGTAACCTGATCG+GGG | 0.675641 | 4.4:-19465360 | None:intergenic |
| TGAGTCTAACAAAAGAGACA+AGG | 0.682958 | 4.4:+19465284 | MS.gene35142:CDS |
| TTCTGCGGCAGTGACAACTG+AGG | 0.690999 | 4.4:-19463850 | None:intergenic |
| AGTTAACAAACTAAATGACG+TGG | 0.729283 | 4.4:+19466342 | MS.gene35142:CDS |
| TGCATGTAACCTGATCGGGG+AGG | 0.747094 | 4.4:-19465357 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTACAGTAAAAAAATTAT+TGG | - | chr4.4:19466221-19466240 | None:intergenic | 10.0% |
| !! | TTTACAGTAAAAAAATTATT+GGG | - | chr4.4:19466220-19466239 | None:intergenic | 10.0% |
| !! | ACAAAATTTACTATAATCAT+AGG | + | chr4.4:19464531-19464550 | MS.gene35142:intron | 15.0% |
| !! | ATCTTAATCATTTATAAAGT+TGG | + | chr4.4:19464556-19464575 | MS.gene35142:intron | 15.0% |
| !! | ATTTACTATATAATGTTAGT+TGG | - | chr4.4:19465891-19465910 | None:intergenic | 15.0% |
| !!! | ATTAGAATTTTGATGATTTA+AGG | - | chr4.4:19466046-19466065 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAAGATTATCACA+GGG | + | chr4.4:19463799-19463818 | MS.gene35142:intron | 15.0% |
| !! | AAAAAATCTTAAACTTTGAC+AGG | + | chr4.4:19465448-19465467 | MS.gene35142:intron | 20.0% |
| !! | AATGAAAAATGAGATAGAAA+TGG | - | chr4.4:19463729-19463748 | None:intergenic | 20.0% |
| !! | AGAGAAAATCACTTAAAATT+TGG | - | chr4.4:19464242-19464261 | None:intergenic | 20.0% |
| !! | ATCATTATCTAGCAATTAAA+AGG | - | chr4.4:19466001-19466020 | None:intergenic | 20.0% |
| !! | ATGAAAAATGAGATAGAAAT+GGG | - | chr4.4:19463728-19463747 | None:intergenic | 20.0% |
| !! | ATGATAGTCACTAAAATTTA+CGG | + | chr4.4:19464959-19464978 | MS.gene35142:intron | 20.0% |
| !! | CAAAATTATTCTGATACTAT+TGG | + | chr4.4:19465400-19465419 | MS.gene35142:intron | 20.0% |
| !! | TGTTAAGAACAAATCTTATA+TGG | - | chr4.4:19464825-19464844 | None:intergenic | 20.0% |
| !! | TTAGAAAAACTTGAATATAC+CGG | - | chr4.4:19464438-19464457 | None:intergenic | 20.0% |
| !! | TTCTTAACATTATATTGCAT+TGG | + | chr4.4:19464836-19464855 | MS.gene35142:intron | 20.0% |
| !! | TTTAATTGCTAGATAATGAT+TGG | + | chr4.4:19466001-19466020 | MS.gene35142:intron | 20.0% |
| !!! | AATTTTGATGATTTAAGGAA+GGG | - | chr4.4:19466041-19466060 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTAAGATTATCAC+AGG | + | chr4.4:19463798-19463817 | MS.gene35142:intron | 20.0% |
| !!! | TATGATTCATTTTATGAGAA+GGG | + | chr4.4:19464877-19464896 | MS.gene35142:CDS | 20.0% |
| !!! | TGTGTATGTTGATAAATATT+TGG | + | chr4.4:19463775-19463794 | MS.gene35142:intron | 20.0% |
| !!! | TTATGATTCATTTTATGAGA+AGG | + | chr4.4:19464876-19464895 | MS.gene35142:CDS | 20.0% |
| ! | AAATATCTTGAAGATTCAAG+AGG | - | chr4.4:19464205-19464224 | None:intergenic | 25.0% |
| ! | ATTTACAGTACTCTTAAAAG+AGG | + | chr4.4:19464615-19464634 | MS.gene35142:intron | 25.0% |
| ! | ATTTCCAGTAATGAAAATGT+AGG | - | chr4.4:19465627-19465646 | None:intergenic | 25.0% |
| ! | CATACACATTACTACATTTA+TGG | - | chr4.4:19463763-19463782 | None:intergenic | 25.0% |
| ! | GTAGATATTATTCAAACTGA+GGG | + | chr4.4:19465503-19465522 | MS.gene35142:CDS | 25.0% |
| ! | TAATGAAAATGTAGGCAATT+AGG | - | chr4.4:19465619-19465638 | None:intergenic | 25.0% |
| ! | TGTAGATATTATTCAAACTG+AGG | + | chr4.4:19465502-19465521 | MS.gene35142:CDS | 25.0% |
| !! | AAACAGGTTTTTCTTTTCAA+AGG | - | chr4.4:19463612-19463631 | None:intergenic | 25.0% |
| !! | ATCAGAATAATTTTGCACTT+TGG | - | chr4.4:19465395-19465414 | None:intergenic | 25.0% |
| !! | ATTTAGAATGATCTTCTGTT+TGG | + | chr4.4:19464175-19464194 | MS.gene35142:intron | 25.0% |
| !! | TTCTAATCACTGATTATTGT+AGG | + | chr4.4:19466059-19466078 | MS.gene35142:intron | 25.0% |
| !! | TTTAGAATGATCTTCTGTTT+GGG | + | chr4.4:19464176-19464195 | MS.gene35142:intron | 25.0% |
| !!! | AACATTGAGTTTTAGATTGA+AGG | - | chr4.4:19465852-19465871 | None:intergenic | 25.0% |
| !!! | GAATTTTGATGATTTAAGGA+AGG | - | chr4.4:19466042-19466061 | None:intergenic | 25.0% |
| !!! | TTTTAAGTGATTTTCTCTGA+TGG | + | chr4.4:19464244-19464263 | MS.gene35142:intron | 25.0% |
| AACCTACGAACTATTAACAT+AGG | + | chr4.4:19465695-19465714 | MS.gene35142:intron | 30.0% | |
| ACCTACGAACTATTAACATA+GGG | + | chr4.4:19465696-19465715 | MS.gene35142:intron | 30.0% | |
| AGTTAACAAACTAAATGACG+TGG | + | chr4.4:19466342-19466361 | MS.gene35142:CDS | 30.0% | |
| ATGAACTTACTATACCTTTC+TGG | + | chr4.4:19466255-19466274 | MS.gene35142:intron | 30.0% | |
| ATTGACTGACTATGTATACT+AGG | + | chr4.4:19465125-19465144 | MS.gene35142:intron | 30.0% | |
| CTTAAAAGTCATGCAAATGA+TGG | - | chr4.4:19465059-19465078 | None:intergenic | 30.0% | |
| GTCTTTAACACTCGTTTATA+TGG | + | chr4.4:19464463-19464482 | MS.gene35142:intron | 30.0% | |
| GTTTCTTGACTTAAGCATAT+AGG | + | chr4.4:19464485-19464504 | MS.gene35142:intron | 30.0% | |
| TAATGCTCTAGTAGTAAAAC+AGG | - | chr4.4:19463628-19463647 | None:intergenic | 30.0% | |
| TCAAACTATTATCAGCATCT+AGG | - | chr4.4:19465755-19465774 | None:intergenic | 30.0% | |
| TCATACTCTAGTCAAAAGAT+GGG | + | chr4.4:19464774-19464793 | MS.gene35142:intron | 30.0% | |
| TCTAGAAGCAAATTTCAATC+AGG | + | chr4.4:19464077-19464096 | MS.gene35142:intron | 30.0% | |
| TTCATACTCTAGTCAAAAGA+TGG | + | chr4.4:19464773-19464792 | MS.gene35142:intron | 30.0% | |
| TTTAGAGATGAGATTGAAGA+AGG | - | chr4.4:19463534-19463553 | None:intergenic | 30.0% | |
| ! | AATACTAGAGCACTAATCAT+CGG | - | chr4.4:19463925-19463944 | None:intergenic | 30.0% |
| ! | ATTGCCTACATTTTCATTAC+TGG | + | chr4.4:19465620-19465639 | MS.gene35142:intron | 30.0% |
| ! | ATTTGCATGACTTTTAAGCT+AGG | + | chr4.4:19465061-19465080 | MS.gene35142:intron | 30.0% |
| ! | GATTGTGGCAATTTTCAAAA+AGG | + | chr4.4:19465667-19465686 | MS.gene35142:intron | 30.0% |
| ! | TAACATTATATTGCATTGGC+AGG | + | chr4.4:19464840-19464859 | MS.gene35142:intron | 30.0% |
| !! | ATTGATCATTGACTTCTGTT+CGG | + | chr4.4:19466287-19466306 | MS.gene35142:intron | 30.0% |
| !! | TTTTGACTAGAGTATGAACT+TGG | - | chr4.4:19464771-19464790 | None:intergenic | 30.0% |
| AAAGTCATGCAAATGATGGT+TGG | - | chr4.4:19465055-19465074 | None:intergenic | 35.0% | |
| AACCAAAGAATCTGTCCTTA+AGG | + | chr4.4:19463656-19463675 | MS.gene35142:CDS | 35.0% | |
| AATATACCGGACAAGAAGTT+AGG | - | chr4.4:19464425-19464444 | None:intergenic | 35.0% | |
| AGTCAATGATCAATAACTCG+CGG | - | chr4.4:19466281-19466300 | None:intergenic | 35.0% | |
| ATACATCTGAGGAAGAGAAA+AGG | - | chr4.4:19464118-19464137 | None:intergenic | 35.0% | |
| ATAGGAACTGGAAAATGCAT+TGG | + | chr4.4:19464503-19464522 | MS.gene35142:intron | 35.0% | |
| ATCCTTAAGGACAGATTCTT+TGG | - | chr4.4:19463661-19463680 | None:intergenic | 35.0% | |
| ATGCATCACAACAATGATTG+TGG | + | chr4.4:19465652-19465671 | MS.gene35142:intron | 35.0% | |
| CATAAGTACAACCCCTTATT+AGG | + | chr4.4:19463561-19463580 | MS.gene35142:CDS | 35.0% | |
| CTAATAAGGGGTTGTACTTA+TGG | - | chr4.4:19463563-19463582 | None:intergenic | 35.0% | |
| GAATATGCAGATGCTAAAGT+TGG | - | chr4.4:19466090-19466109 | None:intergenic | 35.0% | |
| GATATTATTCAAACTGAGGG+AGG | + | chr4.4:19465506-19465525 | MS.gene35142:CDS | 35.0% | |
| TATGAACTTGGAACTGATAC+TGG | - | chr4.4:19464759-19464778 | None:intergenic | 35.0% | |
| TCCCTATGTTAATAGTTCGT+AGG | - | chr4.4:19465700-19465719 | None:intergenic | 35.0% | |
| TGACTTAAGCATATAGGAAC+TGG | + | chr4.4:19464491-19464510 | MS.gene35142:intron | 35.0% | |
| TGAGTCTAACAAAAGAGACA+AGG | + | chr4.4:19465284-19465303 | MS.gene35142:CDS | 35.0% | |
| ! | CTTTTCAAAGGTAGTAGACA+TGG | - | chr4.4:19463600-19463619 | None:intergenic | 35.0% |
| ! | GAAGTAAAGAACCTTTTCTG+CGG | - | chr4.4:19463868-19463887 | None:intergenic | 35.0% |
| ! | TGTTCTTGGTTTGATTGAGA+AGG | + | chr4.4:19465556-19465575 | MS.gene35142:CDS | 35.0% |
| ! | TTTGAGGTTGCACCTAATAA+GGG | - | chr4.4:19463576-19463595 | None:intergenic | 35.0% |
| !! | AAGAAGGAGAAGAAAGTGTT+AGG | - | chr4.4:19463518-19463537 | None:intergenic | 35.0% |
| !! | AGAAAGTGTTAGGCATGTTA+AGG | - | chr4.4:19463508-19463527 | None:intergenic | 35.0% |
| !! | AGATAGAAATGGGTTTTGCA+TGG | - | chr4.4:19463718-19463737 | None:intergenic | 35.0% |
| !! | AGGGTTGCAGAATTTTGATA+AGG | + | chr4.4:19463818-19463837 | MS.gene35142:CDS | 35.0% |
| !! | TTTTAGATTGAAGGTGTGTC+AGG | - | chr4.4:19465843-19465862 | None:intergenic | 35.0% |
| AAATCACTCTTTACCTGCTC+TGG | - | chr4.4:19464916-19464935 | None:intergenic | 40.0% | |
| AACACCAGACTTTGTAGGAT+TGG | - | chr4.4:19465540-19465559 | None:intergenic | 40.0% | |
| AAGGGGTTGTACTTATGGTT+TGG | - | chr4.4:19463558-19463577 | None:intergenic | 40.0% | |
| AATGCTGCATGTAACCTGAT+CGG | - | chr4.4:19465365-19465384 | None:intergenic | 40.0% | |
| ACTTCATGTGTAGTGTGTGT+CGG | - | chr4.4:19466421-19466440 | None:intergenic | 40.0% | |
| AGACTCAGAATCTGTACACA+AGG | - | chr4.4:19465271-19465290 | None:intergenic | 40.0% | |
| AGGCAATTAGGAAAAGACAC+AGG | - | chr4.4:19465607-19465626 | None:intergenic | 40.0% | |
| ATACCTGTCATGTGTTCATC+CGG | + | chr4.4:19466129-19466148 | MS.gene35142:CDS | 40.0% | |
| ATTTCCAAATCACAGGGTGT+GGG | + | chr4.4:19466313-19466332 | MS.gene35142:intron | 40.0% | |
| CGGTGTATTTCCAAATCACA+GGG | + | chr4.4:19466307-19466326 | MS.gene35142:intron | 40.0% | |
| CTTGGAACTGATACTGGAAA+TGG | - | chr4.4:19464753-19464772 | None:intergenic | 40.0% | |
| GCTTATCAGCTATACATCTG+AGG | - | chr4.4:19464129-19464148 | None:intergenic | 40.0% | |
| GCTTCTAACTTCAGCAATCA+TGG | - | chr4.4:19466371-19466390 | None:intergenic | 40.0% | |
| GGAAGAGAAAAGGAGACTTT+AGG | - | chr4.4:19464108-19464127 | None:intergenic | 40.0% | |
| GTCTAACAAAAGAGACAAGG+AGG | + | chr4.4:19465287-19465306 | MS.gene35142:CDS | 40.0% | |
| TATCAGCCTAACTTCTTGTC+CGG | + | chr4.4:19464416-19464435 | MS.gene35142:CDS | 40.0% | |
| TATTTCCAAATCACAGGGTG+TGG | + | chr4.4:19466312-19466331 | MS.gene35142:intron | 40.0% | |
| TCGGTGTATTTCCAAATCAC+AGG | + | chr4.4:19466306-19466325 | MS.gene35142:intron | 40.0% | |
| TGTTCCAATCCTACAAAGTC+TGG | + | chr4.4:19465533-19465552 | MS.gene35142:CDS | 40.0% | |
| TTCGTTCGCGAAAATCCTTA+AGG | - | chr4.4:19463674-19463693 | None:intergenic | 40.0% | |
| TTGAGGTTGCACCTAATAAG+GGG | - | chr4.4:19463575-19463594 | None:intergenic | 40.0% | |
| !! | CTTTGAGGTTGCACCTAATA+AGG | - | chr4.4:19463577-19463596 | None:intergenic | 40.0% |
| AAGGAGGATACTTCCATCTG+TGG | + | chr4.4:19465303-19465322 | MS.gene35142:CDS | 45.0% | |
| ACTGCAGCTGGAAATGTTGT+AGG | - | chr4.4:19464691-19464710 | None:intergenic | 45.0% | |
| ATGCTGCATGTAACCTGATC+GGG | - | chr4.4:19465364-19465383 | None:intergenic | 45.0% | |
| ATGTGTAGTGTGTGTCGGAA+GGG | - | chr4.4:19466416-19466435 | None:intergenic | 45.0% | |
| CCAAGAACACCAGACTTTGT+AGG | - | chr4.4:19465545-19465564 | None:intergenic | 45.0% | |
| CCTACAAAGTCTGGTGTTCT+TGG | + | chr4.4:19465542-19465561 | MS.gene35142:CDS | 45.0% | |
| GACACACACTACACATGAAG+TGG | + | chr4.4:19466420-19466439 | MS.gene35142:CDS | 45.0% | |
| GCAGAGTCACTTGAACTAGA+AGG | + | chr4.4:19465479-19465498 | MS.gene35142:CDS | 45.0% | |
| GTGACAGACAAAACCACAGA+TGG | - | chr4.4:19465319-19465338 | None:intergenic | 45.0% | |
| TACCTGTCATGTGTTCATCC+GGG | + | chr4.4:19466130-19466149 | MS.gene35142:CDS | 45.0% | |
| TTGTCAATGTCGTGCTTGCA+GGG | + | chr4.4:19464342-19464361 | MS.gene35142:intron | 45.0% | |
| ! | AGGTAGTAGACATGGCTTTG+AGG | - | chr4.4:19463592-19463611 | None:intergenic | 45.0% |
| ! | AGTGACTTTTACTCCAGAGC+AGG | + | chr4.4:19464900-19464919 | MS.gene35142:CDS | 45.0% |
| ! | ATAGCTAGCTTCACCAACTC+CGG | - | chr4.4:19464399-19464418 | None:intergenic | 45.0% |
| ! | TTGCATTGGCAGGTTGAGAT+TGG | + | chr4.4:19464850-19464869 | MS.gene35142:intron | 45.0% |
| !! | AGTTGAAGCAGGAGCACTAA+TGG | + | chr4.4:19464708-19464727 | MS.gene35142:CDS | 45.0% |
| AGTTGTCACTGCCGCAGAAA+AGG | + | chr4.4:19463854-19463873 | MS.gene35142:CDS | 50.0% | |
| CATGTGTAGTGTGTGTCGGA+AGG | - | chr4.4:19466417-19466436 | None:intergenic | 50.0% | |
| CGTCGATATAGCATGTGACC+CGG | + | chr4.4:19464377-19464396 | MS.gene35142:CDS | 50.0% | |
| CTGGAGCTTCTGGTGTAGTA+AGG | + | chr4.4:19466187-19466206 | MS.gene35142:intron | 50.0% | |
| CTTGTCAATGTCGTGCTTGC+AGG | + | chr4.4:19464341-19464360 | MS.gene35142:intron | 50.0% | |
| TATAGCATGTGACCCGGAGT+TGG | + | chr4.4:19464383-19464402 | MS.gene35142:CDS | 50.0% | |
| TCAATAACTCGCGGCCAGAA+AGG | - | chr4.4:19466272-19466291 | None:intergenic | 50.0% | |
| TGCTGCATGTAACCTGATCG+GGG | - | chr4.4:19465363-19465382 | None:intergenic | 50.0% | |
| TTTCCAGCTGCAGTTGAAGC+AGG | + | chr4.4:19464697-19464716 | MS.gene35142:CDS | 50.0% | |
| ! | AAGTGCTGTCACAGCACCTA+TGG | + | chr4.4:19466155-19466174 | MS.gene35142:CDS | 50.0% |
| ! | TAGCTAGCTTCACCAACTCC+GGG | - | chr4.4:19464398-19464417 | None:intergenic | 50.0% |
| AGAGCCCACACCCTGTGATT+TGG | - | chr4.4:19466320-19466339 | None:intergenic | 55.0% | |
| AGCCCGGATGAACACATGAC+AGG | - | chr4.4:19466135-19466154 | None:intergenic | 55.0% | |
| GCACCTATGGCTATCACTGC+TGG | + | chr4.4:19466168-19466187 | MS.gene35142:CDS | 55.0% | |
| GCTATCACTGCTGGAGCTTC+TGG | + | chr4.4:19466177-19466196 | MS.gene35142:CDS | 55.0% | |
| GCTCCAGCAGTGATAGCCAT+AGG | - | chr4.4:19466174-19466193 | None:intergenic | 55.0% | |
| TCAATGTCGTGCTTGCAGGG+AGG | + | chr4.4:19464345-19464364 | MS.gene35142:intron | 55.0% | |
| TCGCGAACGAACAGCTCTCA+AGG | + | chr4.4:19463683-19463702 | MS.gene35142:CDS | 55.0% | |
| TGCATGTAACCTGATCGGGG+AGG | - | chr4.4:19465360-19465379 | None:intergenic | 55.0% | |
| TGCTGTGACAGCACTTAGCC+CGG | - | chr4.4:19466151-19466170 | None:intergenic | 55.0% | |
| TTCTGCGGCAGTGACAACTG+AGG | - | chr4.4:19463853-19463872 | None:intergenic | 55.0% | |
| ! | CTAGGTGCAAGTGTCGCATC+TGG | - | chr4.4:19465737-19465756 | None:intergenic | 55.0% |
| CACACTAAGCCTCCCCGATC+AGG | + | chr4.4:19465348-19465367 | MS.gene35142:CDS | 60.0% | |
| GCTCCTGCTTCAACTGCAGC+TGG | - | chr4.4:19464703-19464722 | None:intergenic | 60.0% | |
| TCGGGGAGGCTTAGTGTGTG+AGG | - | chr4.4:19465346-19465365 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19463498 | 19466459 | 19463498 | ID=MS.gene35142 |
| chr4.4 | mRNA | 19463498 | 19466459 | 19463498 | ID=MS.gene35142.t1;Parent=MS.gene35142 |
| chr4.4 | exon | 19463498 | 19463704 | 19463498 | ID=MS.gene35142.t1.exon1;Parent=MS.gene35142.t1 |
| chr4.4 | CDS | 19463498 | 19463704 | 19463498 | ID=cds.MS.gene35142.t1;Parent=MS.gene35142.t1 |
| chr4.4 | exon | 19463810 | 19463875 | 19463810 | ID=MS.gene35142.t1.exon2;Parent=MS.gene35142.t1 |
| chr4.4 | CDS | 19463810 | 19463875 | 19463810 | ID=cds.MS.gene35142.t1;Parent=MS.gene35142.t1 |
| chr4.4 | exon | 19464363 | 19464437 | 19464363 | ID=MS.gene35142.t1.exon3;Parent=MS.gene35142.t1 |
| chr4.4 | CDS | 19464363 | 19464437 | 19464363 | ID=cds.MS.gene35142.t1;Parent=MS.gene35142.t1 |
| chr4.4 | exon | 19464667 | 19464729 | 19464667 | ID=MS.gene35142.t1.exon4;Parent=MS.gene35142.t1 |
| chr4.4 | CDS | 19464667 | 19464729 | 19464667 | ID=cds.MS.gene35142.t1;Parent=MS.gene35142.t1 |
| chr4.4 | exon | 19464862 | 19464921 | 19464862 | ID=MS.gene35142.t1.exon5;Parent=MS.gene35142.t1 |
| chr4.4 | CDS | 19464862 | 19464921 | 19464862 | ID=cds.MS.gene35142.t1;Parent=MS.gene35142.t1 |
| chr4.4 | exon | 19465280 | 19465369 | 19465280 | ID=MS.gene35142.t1.exon6;Parent=MS.gene35142.t1 |
| chr4.4 | CDS | 19465280 | 19465369 | 19465280 | ID=cds.MS.gene35142.t1;Parent=MS.gene35142.t1 |
| chr4.4 | exon | 19465470 | 19465577 | 19465470 | ID=MS.gene35142.t1.exon7;Parent=MS.gene35142.t1 |
| chr4.4 | CDS | 19465470 | 19465577 | 19465470 | ID=cds.MS.gene35142.t1;Parent=MS.gene35142.t1 |
| chr4.4 | exon | 19466081 | 19466203 | 19466081 | ID=MS.gene35142.t1.exon8;Parent=MS.gene35142.t1 |
| chr4.4 | CDS | 19466081 | 19466203 | 19466081 | ID=cds.MS.gene35142.t1;Parent=MS.gene35142.t1 |
| chr4.4 | exon | 19466328 | 19466459 | 19466328 | ID=MS.gene35142.t1.exon9;Parent=MS.gene35142.t1 |
| chr4.4 | CDS | 19466328 | 19466459 | 19466328 | ID=cds.MS.gene35142.t1;Parent=MS.gene35142.t1 |
| Gene Sequence |
| Protein sequence |
