AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053213


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053213.t1 MTR_4g007080 96.829 473 14 1 1 473 1 472 0.0 955
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene053213.t1 AT1G15980 74.118 425 107 3 50 472 37 460 0.0 636

Find 113 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGCTACCCCTTGAAATA+TGG 0.211000 4.2:-92536848 MS.gene053213:CDS
TCCAATGATTCAGTTGATTA+AGG 0.219521 4.2:-92537930 MS.gene053213:CDS
CATGATCTTGAGCACAAAAT+TGG 0.289677 4.2:-92537482 MS.gene053213:CDS
CCTTTAGGATTGAAAGTTAG+AGG 0.300598 4.2:-92538013 MS.gene053213:CDS
TCCTTTCTTTACACCTGCTT+TGG 0.309889 4.2:+92536941 None:intergenic
GAAGTTTCCAGCTGGTTATA+TGG 0.315816 4.2:-92538047 MS.gene053213:CDS
AACGAACCATATTCGATATT+CGG 0.330076 4.2:+92538142 None:intergenic
AATCCATAGGGATTGTTGTT+TGG 0.334719 4.2:+92538073 None:intergenic
TTTGGATTATCCGGCGGCCT+TGG 0.336805 4.2:+92538091 None:intergenic
CTCCCGCGGCATTCACATTC+GGG 0.338856 4.2:+92537395 None:intergenic
AGGTGTTGTTGTGTGGTATC+TGG 0.341951 4.2:-92537980 MS.gene053213:CDS
AAGTTAGAGGTGATGTTAGA+AGG 0.352974 4.2:-92538000 MS.gene053213:CDS
TCCTTAATCAACTGAATCAT+TGG 0.362538 4.2:+92537929 None:intergenic
TTTGTAGTGAAATGTGAAAA+TGG 0.366889 4.2:+92538322 None:intergenic
GCTCCCGCGGCATTCACATT+CGG 0.367111 4.2:+92537394 None:intergenic
TCTGAAAGATTTGTACTATC+AGG 0.377252 4.2:+92537343 None:intergenic
GGAAGATATATTGTGATTCA+TGG 0.391732 4.2:-92536921 MS.gene053213:CDS
GGATTGTTGTTTGGATTATC+CGG 0.400677 4.2:+92538082 None:intergenic
CACTTAAAATATCACTTTCA+AGG 0.403345 4.2:-92536995 MS.gene053213:CDS
GAAGACCCGAATATCGAATA+TGG 0.403352 4.2:-92538148 MS.gene053213:CDS
ATGGTTGAGATAGCTCCTTT+AGG 0.414492 4.2:-92538028 MS.gene053213:CDS
TCAAGGGGTAGCAAGCTATC+AGG 0.415406 4.2:+92536855 None:intergenic
CTTGCTACCCCTTGAAATAT+GGG 0.418862 4.2:-92536847 MS.gene053213:CDS
CAATGAAACATTGGTTGGAT+AGG 0.419961 4.2:+92538279 None:intergenic
ACGAACCATATTCGATATTC+GGG 0.425608 4.2:+92538143 None:intergenic
AATGTGAATGCCGCGGGAGC+AGG 0.431918 4.2:-92537391 MS.gene053213:CDS
AGTTGAATAAGAATGTTAGA+TGG 0.432160 4.2:-92537847 MS.gene053213:CDS
CAAAGGCCACAATGCAGTCT+AGG 0.436420 4.2:-92536884 MS.gene053213:CDS
ATCGATCAACTTCCCCGTCT+TGG 0.442656 4.2:+92535706 None:intergenic
TCATTCCACATGAGAAAGAA+AGG 0.445005 4.2:-92536291 MS.gene053213:CDS
CAATTTCAGCCCATATTTCA+AGG 0.445698 4.2:+92536838 None:intergenic
GGGTCTTCTCCATCGTCAAA+AGG 0.459837 4.2:+92538163 None:intergenic
GGTGTTCAGATTGATGTTGT+GGG 0.460104 4.2:-92537896 MS.gene053213:CDS
GGCTCAGGAAACTCATCGTC+CGG 0.465768 4.2:+92537809 None:intergenic
GAGCTGAATTGCAGCGGTAT+TGG 0.468926 4.2:+92535940 None:intergenic
GAAAATGTTGAGGAAATAGT+TGG 0.470649 4.2:-92536268 MS.gene053213:CDS
AGCACAAAATTGGCCGGAGT+TGG 0.475394 4.2:-92537472 MS.gene053213:CDS
CTGAAATTGCTGATGCTGTA+AGG 0.476552 4.2:-92536824 MS.gene053213:intron
TGGTGTTCAGATTGATGTTG+TGG 0.478619 4.2:-92537897 MS.gene053213:CDS
AAAGGCCACAATGCAGTCTA+GGG 0.479022 4.2:-92536883 MS.gene053213:CDS
ATCACTTTCAAGGAAGTTGA+AGG 0.487703 4.2:-92536985 MS.gene053213:CDS
CCTCTAACTTTCAATCCTAA+AGG 0.488882 4.2:+92538013 None:intergenic
AAGGAAGTTGAAGGAAGTTG+TGG 0.489133 4.2:-92536976 MS.gene053213:CDS
TCGAACTAGGTATCATCAAA+TGG 0.492338 4.2:-92537069 MS.gene053213:intron
GGGAAACAAGTTTGTTCCGC+AGG 0.498578 4.2:-92535759 MS.gene053213:CDS
TCAGTATACTCAGCAGGCTC+AGG 0.500874 4.2:+92537794 None:intergenic
CTTCATCACCACCCCTGGAC+AGG 0.503827 4.2:-92536227 MS.gene053213:intron
ATAATCTTCATCACCACCCC+TGG 0.505329 4.2:-92536232 MS.gene053213:CDS
ACATTGGTTGGATAGGTTGA+AGG 0.506110 4.2:+92538286 None:intergenic
GGTCTTCTCCATCGTCAAAA+GGG 0.506897 4.2:+92538164 None:intergenic
AATCCAAACAACAATCCCTA+TGG 0.508106 4.2:-92538076 MS.gene053213:CDS
GTTTCGAAACGTTCCACGGC+AGG 0.511476 4.2:-92537027 MS.gene053213:CDS
ATCTCAACCATATAACCAGC+TGG 0.513445 4.2:+92538040 None:intergenic
GTTAACAATGAAACATTGGT+TGG 0.517797 4.2:+92538274 None:intergenic
GTTGAATAAGAATGTTAGAT+GGG 0.518616 4.2:-92537846 MS.gene053213:CDS
GGTATCATCAAATGGAAGAC+TGG 0.518755 4.2:-92537061 MS.gene053213:CDS
GGTGGTGATGAAGATTATAG+AGG 0.521977 4.2:+92536237 None:intergenic
GAAGATATATTGTGATTCAT+GGG 0.526201 4.2:-92536920 MS.gene053213:CDS
ACCAAAGCAGGTGTAAAGAA+AGG 0.531255 4.2:-92536942 MS.gene053213:CDS
TGGAAACTTCAAGAATCCAT+AGG 0.533581 4.2:+92538060 None:intergenic
AGATACTTGAGTACCTGTCC+AGG 0.536335 4.2:+92536214 None:intergenic
TGAAGTTAACAATGAAACAT+TGG 0.536410 4.2:+92538270 None:intergenic
AATTTCAGCCCATATTTCAA+GGG 0.536815 4.2:+92536839 None:intergenic
TACCCGAATGTGAATGCCGC+GGG 0.541007 4.2:-92537397 MS.gene053213:CDS
GCTCTTATTAATGACTCAGC+TGG 0.542037 4.2:-92535974 MS.gene053213:CDS
CATTTCTTCTCTTCTGCCTG+CGG 0.542414 4.2:+92535743 None:intergenic
GGATTCTTGAAGTTTCCAGC+TGG 0.544542 4.2:-92538055 MS.gene053213:CDS
GGTTGGATAGGTTGAAGGAA+TGG 0.547205 4.2:+92538291 None:intergenic
GAAGTTGAAGGAAGTTGTGG+AGG 0.547515 4.2:-92536973 MS.gene053213:CDS
ATCTTGAGCACAAAATTGGC+CGG 0.552537 4.2:-92537478 MS.gene053213:CDS
TGCCGTGGAACGTTTCGAAA+CGG 0.553199 4.2:+92537029 None:intergenic
ACAACATCAATCTGAACACC+AGG 0.556920 4.2:+92537899 None:intergenic
CATTCCACATGAGAAAGAAA+GGG 0.559120 4.2:-92536290 MS.gene053213:CDS
GATGTTGTGGGTTCTGAGAG+AGG 0.559979 4.2:-92537884 MS.gene053213:CDS
GAGGAGAGATACACCAAAGC+AGG 0.560047 4.2:-92536954 MS.gene053213:CDS
GTAAACAAGACGAGGATCCA+AGG 0.561447 4.2:-92538108 MS.gene053213:CDS
TGTTAGAAGGTGTTGTTGTG+TGG 0.566688 4.2:-92537987 MS.gene053213:CDS
ATATGCTGCATGGCCAACTC+CGG 0.567278 4.2:+92537459 None:intergenic
TGATTCAGTTGATTAAGGAT+AGG 0.569315 4.2:-92537925 MS.gene053213:CDS
GACCGTTTCGAAACGTTCCA+CGG 0.572474 4.2:-92537031 MS.gene053213:CDS
ACAAAATCAGTATACTCAGC+AGG 0.575460 4.2:+92537788 None:intergenic
GAAAGAAAGGGAAAATGTTG+AGG 0.576655 4.2:-92536278 MS.gene053213:CDS
GTTGATCGATATAGATGTTG+AGG 0.578479 4.2:-92535693 MS.gene053213:CDS
CATCAAATGGAAGACTGGCT+AGG 0.582960 4.2:-92537056 MS.gene053213:CDS
GGAAACTTCAAGAATCCATA+GGG 0.585870 4.2:+92538061 None:intergenic
CATTGTGATATCATCCAAGA+CGG 0.586410 4.2:-92535720 MS.gene053213:CDS
TTGATTAAGGATAGGTACCC+TGG 0.587419 4.2:-92537917 MS.gene053213:CDS
TGGGATACAATCAGACTCAA+AGG 0.593935 4.2:-92536901 MS.gene053213:CDS
TCGTCAAAAGGGTCTAGCCA+TGG 0.597498 4.2:+92538175 None:intergenic
GTTGAATTGTAACAATGTGA+TGG 0.600380 4.2:+92538238 None:intergenic
ATGTTGTGGGTTCTGAGAGA+GGG 0.600619 4.2:-92537883 MS.gene053213:CDS
ATTGTGATATCATCCAAGAC+GGG 0.603268 4.2:-92535719 MS.gene053213:CDS
ATTTGCGAGCTGAATTGCAG+CGG 0.608565 4.2:+92535934 None:intergenic
GATAGTACAAATCTTTCAGA+GGG 0.617454 4.2:-92537340 MS.gene053213:CDS
AGTGGTGGTACAACCTGCCG+TGG 0.618807 4.2:+92537014 None:intergenic
AGACGAGGATCCAAGGCCGC+CGG 0.626429 4.2:-92538101 MS.gene053213:CDS
TGATAGTACAAATCTTTCAG+AGG 0.632241 4.2:-92537341 MS.gene053213:CDS
AATTGTAACAATGTGATGGA+TGG 0.632372 4.2:+92538242 None:intergenic
GATACTTGAGTACCTGTCCA+GGG 0.638272 4.2:+92536215 None:intergenic
CTTGAGTACCTGTCCAGGGG+TGG 0.638966 4.2:+92536219 None:intergenic
AGTACAAATCTTTCAGAGGG+AGG 0.642667 4.2:-92537337 MS.gene053213:CDS
ATTTCAGCCCATATTTCAAG+GGG 0.643244 4.2:+92536840 None:intergenic
TGTTGTTGTGTGGTATCTGG+TGG 0.649242 4.2:-92537977 MS.gene053213:CDS
TTCAGACGGTAAACAAGACG+AGG 0.660676 4.2:-92538116 MS.gene053213:CDS
TTGTTGTTTGGATTATCCGG+CGG 0.666048 4.2:+92538085 None:intergenic
ATCACCCCTAGACTGCATTG+TGG 0.675919 4.2:+92536878 None:intergenic
TCATGAATAAATATGCTGCA+TGG 0.676264 4.2:+92537449 None:intergenic
ATACTTGAGTACCTGTCCAG+GGG 0.689398 4.2:+92536216 None:intergenic
AAGGCCACAATGCAGTCTAG+GGG 0.695170 4.2:-92536882 MS.gene053213:CDS
TTGTGATATCATCCAAGACG+GGG 0.707166 4.2:-92535718 MS.gene053213:CDS
TTACCCGAATGTGAATGCCG+CGG 0.711444 4.2:-92537398 MS.gene053213:CDS
ATAACTAACTCTATCTCGCG+CGG 0.715093 4.2:+92537423 None:intergenic
CAACATCAATCTGAACACCA+GGG 0.751591 4.2:+92537900 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTAGAAATTCGATAT+AGG - chr4.2:92536461-92536480 MS.gene053213:intron 15.0%
!! TATGGAGAAATTATAAAAAT+AGG + chr4.2:92537425-92537444 None:intergenic 15.0%
!! TCAAATAAACTAATTCAAAA+AGG + chr4.2:92537317-92537336 None:intergenic 15.0%
!!! AAACATTTTTAATGATCTAA+CGG + chr4.2:92536770-92536789 None:intergenic 15.0%
!! AACAATTAACATATGAATAC+AGG - chr4.2:92537677-92537696 MS.gene053213:intron 20.0%
!! AACATTATAATTCATGTGAA+TGG + chr4.2:92538128-92538147 None:intergenic 20.0%
!! AATTATAATGTTTCCCTAAA+CGG - chr4.2:92538136-92538155 MS.gene053213:CDS 20.0%
!! ACAATTAACATATGAATACA+GGG - chr4.2:92537678-92537697 MS.gene053213:intron 20.0%
!! GGTGTTAATGTATAAAAATA+AGG + chr4.2:92537485-92537504 None:intergenic 20.0%
!!! GTTTTCATAAGCTATTATTA+TGG + chr4.2:92537443-92537462 None:intergenic 20.0%
!!! TAACAAAGTCTTATATGTTA+CGG + chr4.2:92537276-92537295 None:intergenic 20.0%
!!! TATTTTTCTTTAGAAATTCG+AGG - chr4.2:92536304-92536323 MS.gene053213:CDS 20.0%
!!! TGAAAATGGTTTTGAAATTT+TGG + chr4.2:92535677-92535696 None:intergenic 20.0%
! AGTTGAATAAGAATGTTAGA+TGG - chr4.2:92536163-92536182 MS.gene053213:intron 25.0%
! ATAGCATTTAGACTTACATT+TGG - chr4.2:92536867-92536886 MS.gene053213:CDS 25.0%
! CACTTAAAATATCACTTTCA+AGG - chr4.2:92537015-92537034 MS.gene053213:CDS 25.0%
! CTACTAACATAAACATTTGT+GGG - chr4.2:92537343-92537362 MS.gene053213:CDS 25.0%
! GAAGATATATTGTGATTCAT+GGG - chr4.2:92537090-92537109 MS.gene053213:intron 25.0%
! GTTGAATAAGAATGTTAGAT+GGG - chr4.2:92536164-92536183 MS.gene053213:intron 25.0%
! TCTACTAACATAAACATTTG+TGG - chr4.2:92537342-92537361 MS.gene053213:CDS 25.0%
! TGAAGTTAACAATGAAACAT+TGG + chr4.2:92535743-92535762 None:intergenic 25.0%
! TGTTATTATTGTTACATCGA+TGG - chr4.2:92537291-92537310 MS.gene053213:intron 25.0%
! TTTGTAGTGAAATGTGAAAA+TGG + chr4.2:92535691-92535710 None:intergenic 25.0%
!! ACGAAATTTTTCTTTAACTG+AGG - chr4.2:92536899-92536918 MS.gene053213:CDS 25.0%
!! ATTGTCTAGTATGTATGTTT+TGG - chr4.2:92537643-92537662 MS.gene053213:intron 25.0%
!! TAAATTGAGCAACAGTTTTA+TGG + chr4.2:92538199-92538218 None:intergenic 25.0%
!! TTTGAAGTCAAACATATGAT+TGG - chr4.2:92536809-92536828 MS.gene053213:intron 25.0%
!!! AAATTGAGCAACAGTTTTAT+GGG + chr4.2:92538198-92538217 None:intergenic 25.0%
!!! CTTGAAAGTGATATTTTAAG+TGG + chr4.2:92537017-92537036 None:intergenic 25.0%
AACGAACCATATTCGATATT+CGG + chr4.2:92535871-92535890 None:intergenic 30.0%
AAGTCGAAAAGCTTAAATGA+TGG + chr4.2:92537249-92537268 None:intergenic 30.0%
AATTTCAGCCCATATTTCAA+GGG + chr4.2:92537174-92537193 None:intergenic 30.0%
ACAATGACAGAATGAATACA+AGG + chr4.2:92537628-92537647 None:intergenic 30.0%
AGCATACACGATTATCATAT+AGG + chr4.2:92537506-92537525 None:intergenic 30.0%
ATGTAAGTCTAAATGCTATC+AGG + chr4.2:92536866-92536885 None:intergenic 30.0%
GAAAATGTTGAGGAAATAGT+TGG - chr4.2:92537742-92537761 MS.gene053213:intron 30.0%
GATAGTACAAATCTTTCAGA+GGG - chr4.2:92536670-92536689 MS.gene053213:intron 30.0%
GGAAGATATATTGTGATTCA+TGG - chr4.2:92537089-92537108 MS.gene053213:intron 30.0%
GTTAACAATGAAACATTGGT+TGG + chr4.2:92535739-92535758 None:intergenic 30.0%
GTTGAATTGTAACAATGTGA+TGG + chr4.2:92535775-92535794 None:intergenic 30.0%
TCATGAATAAATATGCTGCA+TGG + chr4.2:92536564-92536583 None:intergenic 30.0%
TCCAATGATTCAGTTGATTA+AGG - chr4.2:92536080-92536099 MS.gene053213:intron 30.0%
TCCTTAATCAACTGAATCAT+TGG + chr4.2:92536084-92536103 None:intergenic 30.0%
TCTGAAAGATTTGTACTATC+AGG + chr4.2:92536670-92536689 None:intergenic 30.0%
TGATAGTACAAATCTTTCAG+AGG - chr4.2:92536669-92536688 MS.gene053213:intron 30.0%
TGATTCAGTTGATTAAGGAT+AGG - chr4.2:92536085-92536104 MS.gene053213:intron 30.0%
TGTGAATGGTAAAATTACCT+AGG + chr4.2:92538114-92538133 None:intergenic 30.0%
TTATGTTATGCTTACAGAGT+AGG - chr4.2:92536497-92536516 MS.gene053213:intron 30.0%
TTTGATGAACACAGTTATGT+AGG + chr4.2:92537582-92537601 None:intergenic 30.0%
! AATTGTAACAATGTGATGGA+TGG + chr4.2:92535771-92535790 None:intergenic 30.0%
! TATTTTGCATGCAACAAACT+TGG - chr4.2:92537825-92537844 MS.gene053213:CDS 30.0%
!! GAAAGTGATATTTTAAGTGG+TGG + chr4.2:92537014-92537033 None:intergenic 30.0%
!! TAGAGAGACTCTATTTTAGA+AGG + chr4.2:92537224-92537243 None:intergenic 30.0%
!!! ACTATTTTGCTCTAAAGAGA+AGG - chr4.2:92538230-92538249 MS.gene053213:CDS 30.0%
!!! CTATTTTGCTCTAAAGAGAA+GGG - chr4.2:92538231-92538250 MS.gene053213:CDS 30.0%
AAACCATACAAACACGGTTA+GGG + chr4.2:92538008-92538027 None:intergenic 35.0%
AAGTTAGAGGTGATGTTAGA+AGG - chr4.2:92536010-92536029 MS.gene053213:intron 35.0%
AATAGGCTGAAAGCAACTTA+TGG + chr4.2:92537408-92537427 None:intergenic 35.0%
AATCCAAACAACAATCCCTA+TGG - chr4.2:92535934-92535953 MS.gene053213:CDS 35.0%
ACAAAATCAGTATACTCAGC+AGG + chr4.2:92536225-92536244 None:intergenic 35.0%
ACGAACCATATTCGATATTC+GGG + chr4.2:92535870-92535889 None:intergenic 35.0%
ATCACTTTCAAGGAAGTTGA+AGG - chr4.2:92537025-92537044 MS.gene053213:CDS 35.0%
ATGCCAAAAAGAACAATCCA+TGG - chr4.2:92535818-92535837 MS.gene053213:intron 35.0%
ATTGTGATATCATCCAAGAC+GGG - chr4.2:92538291-92538310 MS.gene053213:CDS 35.0%
ATTTCAGCCCATATTTCAAG+GGG + chr4.2:92537173-92537192 None:intergenic 35.0%
CAATTTCAGCCCATATTTCA+AGG + chr4.2:92537175-92537194 None:intergenic 35.0%
CATGATCTTGAGCACAAAAT+TGG - chr4.2:92536528-92536547 MS.gene053213:intron 35.0%
CATTCCACATGAGAAAGAAA+GGG - chr4.2:92537720-92537739 MS.gene053213:intron 35.0%
CATTGTGATATCATCCAAGA+CGG - chr4.2:92538290-92538309 MS.gene053213:CDS 35.0%
CCTCTAACTTTCAATCCTAA+AGG + chr4.2:92536000-92536019 None:intergenic 35.0%
GAAAGAAAGGGAAAATGTTG+AGG - chr4.2:92537732-92537751 MS.gene053213:intron 35.0%
GGAAACTTCAAGAATCCATA+GGG + chr4.2:92535952-92535971 None:intergenic 35.0%
GTTGATCGATATAGATGTTG+AGG - chr4.2:92538317-92538336 MS.gene053213:CDS 35.0%
TAAACCATACAAACACGGTT+AGG + chr4.2:92538009-92538028 None:intergenic 35.0%
TCATGTGGAATGACAAAAAG+TGG + chr4.2:92537712-92537731 None:intergenic 35.0%
TCATTCCACATGAGAAAGAA+AGG - chr4.2:92537719-92537738 MS.gene053213:intron 35.0%
TCGAACTAGGTATCATCAAA+TGG - chr4.2:92536941-92536960 MS.gene053213:CDS 35.0%
TGGAAACTTCAAGAATCCAT+AGG + chr4.2:92535953-92535972 None:intergenic 35.0%
TTCGACAAACTCATCGAAAA+TGG + chr4.2:92536926-92536945 None:intergenic 35.0%
TTTGCCTGCTATACTTTCTA+AGG - chr4.2:92536435-92536454 MS.gene053213:intron 35.0%
! AATCCATAGGGATTGTTGTT+TGG + chr4.2:92535940-92535959 None:intergenic 35.0%
! CAATGAAACATTGGTTGGAT+AGG + chr4.2:92535734-92535753 None:intergenic 35.0%
! TGATTTTGTTGGTCAGCTAA+AGG - chr4.2:92536236-92536255 MS.gene053213:CDS 35.0%
! TGTACCTTAGAAAGTATAGC+AGG + chr4.2:92536442-92536461 None:intergenic 35.0%
! TTTTCCCTTTCTTTCTCATG+TGG + chr4.2:92537727-92537746 None:intergenic 35.0%
!! ATGGGCTAATGTTTTTGATC+CGG - chr4.2:92536182-92536201 MS.gene053213:intron 35.0%
!! CCTTTAGGATTGAAAGTTAG+AGG - chr4.2:92535997-92536016 MS.gene053213:intron 35.0%
!! CTTAATCAATGTGCCGTTTA+GGG + chr4.2:92538152-92538171 None:intergenic 35.0%
!! GGATTGTTGTTTGGATTATC+CGG + chr4.2:92535931-92535950 None:intergenic 35.0%
!! TAGCCATGGATTGTTCTTTT+TGG + chr4.2:92535824-92535843 None:intergenic 35.0%
!! TATGGTTCGTTGTTTTCAGA+CGG - chr4.2:92535880-92535899 MS.gene053213:intron 35.0%
!!! GCTGAGTATACTGATTTTGT+TGG - chr4.2:92536225-92536244 MS.gene053213:intron 35.0%
AAGGAAGTTGAAGGAAGTTG+TGG - chr4.2:92537034-92537053 MS.gene053213:CDS 40.0%
ACAACATCAATCTGAACACC+AGG + chr4.2:92536114-92536133 None:intergenic 40.0%
ACCAAAGCAGGTGTAAAGAA+AGG - chr4.2:92537068-92537087 MS.gene053213:intron 40.0%
AGTACAAATCTTTCAGAGGG+AGG - chr4.2:92536673-92536692 MS.gene053213:intron 40.0%
ATAACTAACTCTATCTCGCG+CGG + chr4.2:92536590-92536609 None:intergenic 40.0%
ATCTCAACCATATAACCAGC+TGG + chr4.2:92535973-92535992 None:intergenic 40.0%
ATCTTGAGCACAAAATTGGC+CGG - chr4.2:92536532-92536551 MS.gene053213:intron 40.0%
ATGGTTGAGATAGCTCCTTT+AGG - chr4.2:92535982-92536001 MS.gene053213:CDS 40.0%
ATTCCCTAACCGTGTTTGTA+TGG - chr4.2:92538002-92538021 MS.gene053213:CDS 40.0%
CAACATCAATCTGAACACCA+GGG + chr4.2:92536113-92536132 None:intergenic 40.0%
CCAGCTAAACCATACAAACA+CGG + chr4.2:92538014-92538033 None:intergenic 40.0%
CTGAAATTGCTGATGCTGTA+AGG - chr4.2:92537186-92537205 MS.gene053213:intron 40.0%
CTTGCTACCCCTTGAAATAT+GGG - chr4.2:92537163-92537182 MS.gene053213:intron 40.0%
GAAGACCCGAATATCGAATA+TGG - chr4.2:92535862-92535881 MS.gene053213:intron 40.0%
GAAGTTTCCAGCTGGTTATA+TGG - chr4.2:92535963-92535982 MS.gene053213:CDS 40.0%
GCTCTTATTAATGACTCAGC+TGG - chr4.2:92538036-92538055 MS.gene053213:CDS 40.0%
GGTATCATCAAATGGAAGAC+TGG - chr4.2:92536949-92536968 MS.gene053213:CDS 40.0%
GGTGCATTACAAGGTATGAT+CGG + chr4.2:92536336-92536355 None:intergenic 40.0%
GGTGTTCAGATTGATGTTGT+GGG - chr4.2:92536114-92536133 MS.gene053213:intron 40.0%
TCCTTTCTTTACACCTGCTT+TGG + chr4.2:92537072-92537091 None:intergenic 40.0%
TGGGATACAATCAGACTCAA+AGG - chr4.2:92537109-92537128 MS.gene053213:intron 40.0%
TGGTGTTCAGATTGATGTTG+TGG - chr4.2:92536113-92536132 MS.gene053213:intron 40.0%
TTCGATGAGTTTGTCGAACT+AGG - chr4.2:92536928-92536947 MS.gene053213:CDS 40.0%
TTGATTAAGGATAGGTACCC+TGG - chr4.2:92536093-92536112 MS.gene053213:intron 40.0%
TTGTGATATCATCCAAGACG+GGG - chr4.2:92538292-92538311 MS.gene053213:CDS 40.0%
TTTGTTGGTCAGCTAAAGGT+TGG - chr4.2:92536240-92536259 MS.gene053213:CDS 40.0%
! ACATTGGTTGGATAGGTTGA+AGG + chr4.2:92535727-92535746 None:intergenic 40.0%
! GGTGGTGATGAAGATTATAG+AGG + chr4.2:92537776-92537795 None:intergenic 40.0%
!! GCTTAATCAATGTGCCGTTT+AGG + chr4.2:92538153-92538172 None:intergenic 40.0%
!! TGTTAGAAGGTGTTGTTGTG+TGG - chr4.2:92536023-92536042 MS.gene053213:intron 40.0%
!! TTGTTGTTTGGATTATCCGG+CGG + chr4.2:92535928-92535947 None:intergenic 40.0%
!!! AGAGTTTTGAGCTATGCAGA+CGG + chr4.2:92536407-92536426 None:intergenic 40.0%
AAAGGCCACAATGCAGTCTA+GGG - chr4.2:92537127-92537146 MS.gene053213:intron 45.0%
AGATACTTGAGTACCTGTCC+AGG + chr4.2:92537799-92537818 None:intergenic 45.0%
ATAATCTTCATCACCACCCC+TGG - chr4.2:92537778-92537797 MS.gene053213:CDS 45.0%
ATACTTGAGTACCTGTCCAG+GGG + chr4.2:92537797-92537816 None:intergenic 45.0%
ATTTGCGAGCTGAATTGCAG+CGG + chr4.2:92538079-92538098 None:intergenic 45.0%
CATTTCTTCTCTTCTGCCTG+CGG + chr4.2:92538270-92538289 None:intergenic 45.0%
CCGTGTTTGTATGGTTTAGC+TGG - chr4.2:92538011-92538030 MS.gene053213:CDS 45.0%
GAAGTTGAAGGAAGTTGTGG+AGG - chr4.2:92537037-92537056 MS.gene053213:CDS 45.0%
GATACTTGAGTACCTGTCCA+GGG + chr4.2:92537798-92537817 None:intergenic 45.0%
GGATTCTTGAAGTTTCCAGC+TGG - chr4.2:92535955-92535974 MS.gene053213:CDS 45.0%
GGTCTTCTCCATCGTCAAAA+GGG + chr4.2:92535849-92535868 None:intergenic 45.0%
GTAAACAAGACGAGGATCCA+AGG - chr4.2:92535902-92535921 MS.gene053213:intron 45.0%
TAAAAACAATCCTGCTCCCG+CGG + chr4.2:92536632-92536651 None:intergenic 45.0%
TGTTGTTGTGTGGTATCTGG+TGG - chr4.2:92536033-92536052 MS.gene053213:intron 45.0%
TTCAGACGGTAAACAAGACG+AGG - chr4.2:92535894-92535913 MS.gene053213:intron 45.0%
! CATCAAATGGAAGACTGGCT+AGG - chr4.2:92536954-92536973 MS.gene053213:CDS 45.0%
! GCTTGCTACCCCTTGAAATA+TGG - chr4.2:92537162-92537181 MS.gene053213:intron 45.0%
! GGTTGGATAGGTTGAAGGAA+TGG + chr4.2:92535722-92535741 None:intergenic 45.0%
! TTGGTCAGCTAAAGGTTGGT+TGG - chr4.2:92536244-92536263 MS.gene053213:CDS 45.0%
!! AGGTGTTGTTGTGTGGTATC+TGG - chr4.2:92536030-92536049 MS.gene053213:intron 45.0%
!! ATGTTGTGGGTTCTGAGAGA+GGG - chr4.2:92536127-92536146 MS.gene053213:intron 45.0%
AAGGCCACAATGCAGTCTAG+GGG - chr4.2:92537128-92537147 MS.gene053213:intron 50.0%
AGACGGACACTCCTTGGATT+AGG + chr4.2:92536390-92536409 None:intergenic 50.0%
AGCACAAAATTGGCCGGAGT+TGG - chr4.2:92536538-92536557 MS.gene053213:intron 50.0%
ATATGCTGCATGGCCAACTC+CGG + chr4.2:92536554-92536573 None:intergenic 50.0%
ATCACCCCTAGACTGCATTG+TGG + chr4.2:92537135-92537154 None:intergenic 50.0%
ATCAGGACACGCCTAATCCA+AGG - chr4.2:92536376-92536395 MS.gene053213:intron 50.0%
ATCGATCAACTTCCCCGTCT+TGG + chr4.2:92538307-92538326 None:intergenic 50.0%
CAAAGGCCACAATGCAGTCT+AGG - chr4.2:92537126-92537145 MS.gene053213:intron 50.0%
CAAATGCGCGCGAAAAACCT+AGG - chr4.2:92538094-92538113 MS.gene053213:CDS 50.0%
GACCGTTTCGAAACGTTCCA+CGG - chr4.2:92536979-92536998 MS.gene053213:CDS 50.0%
GAGCTGAATTGCAGCGGTAT+TGG + chr4.2:92538073-92538092 None:intergenic 50.0%
GAGGAGAGATACACCAAAGC+AGG - chr4.2:92537056-92537075 MS.gene053213:CDS 50.0%
GGGTCTTCTCCATCGTCAAA+AGG + chr4.2:92535850-92535869 None:intergenic 50.0%
TCAAGGGGTAGCAAGCTATC+AGG + chr4.2:92537158-92537177 None:intergenic 50.0%
TCAGTATACTCAGCAGGCTC+AGG + chr4.2:92536219-92536238 None:intergenic 50.0%
TCGTCAAAAGGGTCTAGCCA+TGG + chr4.2:92535838-92535857 None:intergenic 50.0%
TGCCGTGGAACGTTTCGAAA+CGG + chr4.2:92536984-92537003 None:intergenic 50.0%
TTACCCGAATGTGAATGCCG+CGG - chr4.2:92536612-92536631 MS.gene053213:intron 50.0%
! GGGAAACAAGTTTGTTCCGC+AGG - chr4.2:92538251-92538270 MS.gene053213:CDS 50.0%
! TGGCTAGACCCTTTTGACGA+TGG - chr4.2:92535838-92535857 MS.gene053213:intron 50.0%
!! GATGTTGTGGGTTCTGAGAG+AGG - chr4.2:92536126-92536145 MS.gene053213:intron 50.0%
!! GTCGGTATCGGTGCATTACA+AGG + chr4.2:92536345-92536364 None:intergenic 50.0%
CTATGCAGACGGACACTCCT+TGG + chr4.2:92536396-92536415 None:intergenic 55.0%
GGCTCAGGAAACTCATCGTC+CGG + chr4.2:92536204-92536223 None:intergenic 55.0%
GTTTCGAAACGTTCCACGGC+AGG - chr4.2:92536983-92537002 MS.gene053213:CDS 55.0%
TACCCGAATGTGAATGCCGC+GGG - chr4.2:92536613-92536632 MS.gene053213:intron 55.0%
TCCTGATGTCAGACACGCGT+CGG + chr4.2:92536363-92536382 None:intergenic 55.0%
TTTGGATTATCCGGCGGCCT+TGG + chr4.2:92535922-92535941 None:intergenic 55.0%
! TGTCAGACACGCGTCGGTAT+CGG + chr4.2:92536357-92536376 None:intergenic 55.0%
AATGTGAATGCCGCGGGAGC+AGG - chr4.2:92536619-92536638 MS.gene053213:intron 60.0%
ACCGACGCGTGTCTGACATC+AGG - chr4.2:92536359-92536378 MS.gene053213:intron 60.0%
AGTGGTGGTACAACCTGCCG+TGG + chr4.2:92536999-92537018 None:intergenic 60.0%
CTCCCGCGGCATTCACATTC+GGG + chr4.2:92536618-92536637 None:intergenic 60.0%
CTTCATCACCACCCCTGGAC+AGG - chr4.2:92537783-92537802 MS.gene053213:CDS 60.0%
CTTGAGTACCTGTCCAGGGG+TGG + chr4.2:92537794-92537813 None:intergenic 60.0%
GCTCCCGCGGCATTCACATT+CGG + chr4.2:92536619-92536638 None:intergenic 60.0%
AGACGAGGATCCAAGGCCGC+CGG - chr4.2:92535909-92535928 MS.gene053213:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 92535643 92538389 92535643 ID=MS.gene053213
chr4.2 mRNA 92535643 92538389 92535643 ID=MS.gene053213.t1;Parent=MS.gene053213
chr4.2 exon 92537775 92538389 92537775 ID=MS.gene053213.t1.exon1;Parent=MS.gene053213.t1
chr4.2 CDS 92537775 92538389 92537775 ID=cds.MS.gene053213.t1;Parent=MS.gene053213.t1
chr4.2 exon 92537328 92537518 92537328 ID=MS.gene053213.t1.exon2;Parent=MS.gene053213.t1
chr4.2 CDS 92537328 92537518 92537328 ID=cds.MS.gene053213.t1;Parent=MS.gene053213.t1
chr4.2 exon 92536825 92537082 92536825 ID=MS.gene053213.t1.exon3;Parent=MS.gene053213.t1
chr4.2 CDS 92536825 92537082 92536825 ID=cds.MS.gene053213.t1;Parent=MS.gene053213.t1
chr4.2 exon 92536228 92536333 92536228 ID=MS.gene053213.t1.exon4;Parent=MS.gene053213.t1
chr4.2 CDS 92536228 92536333 92536228 ID=cds.MS.gene053213.t1;Parent=MS.gene053213.t1
chr4.2 exon 92535917 92536002 92535917 ID=MS.gene053213.t1.exon5;Parent=MS.gene053213.t1
chr4.2 CDS 92535917 92536002 92535917 ID=cds.MS.gene053213.t1;Parent=MS.gene053213.t1
chr4.2 exon 92535643 92535808 92535643 ID=MS.gene053213.t1.exon6;Parent=MS.gene053213.t1
chr4.2 CDS 92535643 92535808 92535643 ID=cds.MS.gene053213.t1;Parent=MS.gene053213.t1
Gene Sequence

>MS.gene053213

ATGGCTGCAACTGCAACATATTATTTACATACCAAAATTTCAAAACCATTTTCACATTTCACTACAAACACATTTTCCATTCCTTCAACCTATCCAACCAATGTTTCATTGTTAACTTCATTAGACCATCCATCACATTGTTACAATTCAACTAGAAGACTAAATCTTCGCGTAAATGCCAAAAAGAACAATCCATGGCTAGACCCTTTTGACGATGGAGAAGACCCGAATATCGAATATGGTTCGTTGTTTTCAGACGGTAAACAAGACGAGGATCCAAGGCCGCCGGATAATCCAAACAACAATCCCTATGGATTCTTGAAGTTTCCAGCTGGTTATATGGTTGAGATAGCTCCTTTAGGATTGAAAGTTAGAGGTGATGTTAGAAGGTGTTGTTGTGTGGTATCTGGTGGTGTTTATGAGAATCTGTTGTTTTTTCCAATGATTCAGTTGATTAAGGATAGGTACCCTGGTGTTCAGATTGATGTTGTGGGTTCTGAGAGAGGGAAACAATGTTATGAGTTGAATAAGAATGTTAGATGGGCTAATGTTTTTGATCCGGACGATGAGTTTCCTGAGCCTGCTGAGTATACTGATTTTGTTGGTCAGCTAAAGGTTGGTTGGCAAGTATATTTTTTCAATAGTTTGTGTAAAGTTTAGATATTTTTCTTTAGAAATTCGAGGCTGAAACCGATCATACCTTGTAATGCACCGATACCGACGCGTGTCTGACATCAGGACACGCCTAATCCAAGGAGTGTCCGTCTGCATAGCTCAAAACTCTTAACAGAATTTGCCTGCTATACTTTCTAAGGTACATATATTAGAAATTCGATATAGGAACTGATTTATTGTTATGTTATGCTTACAGAGTAGGTACTATGACATGATCTTGAGCACAAAATTGGCCGGAGTTGGCCATGCAGCATATTTATTCATGACAACCGCGCGAGATAGAGTTAGTTATGTTTACCCGAATGTGAATGCCGCGGGAGCAGGATTGTTTTTATCTGAAACATTCACGCCTGATAGTACAAATCTTTCAGAGGGAGGATATCATATGTGAGTTTGTGTATGTTTAGAATCACGATGTAAACACTTTTTACACTGACAATCAATCTTAACCGTTAGATCATTAAAAATGTTTGAATTTAATCATAACTACTTTTGAAGTCAAACATATGATTGGTTATAATTCGTTGACAGTGTAAAACTTTTTACCTGATAGCATTTAGACTTACATTTGGTAGATTTTCACGAAATTTTTCTTTAACTGAGGACCATTTTCGATGAGTTTGTCGAACTAGGTATCATCAAATGGAAGACTGGCTAGGAAGACCGTTTCGAAACGTTCCACGGCAGGTTGTACCACCACTTAAAATATCACTTTCAAGGAAGTTGAAGGAAGTTGTGGAGGAGAGATACACCAAAGCAGGTGTAAAGAAAGGAAGATATATTGTGATTCATGGGATACAATCAGACTCAAAGGCCACAATGCAGTCTAGGGGTGATCCTGATAGCTTGCTACCCCTTGAAATATGGGCTGAAATTGCTGATGCTGTAAGGTATGAAATATTTCCTTCTAAAATAGAGTCTCTCTATGCCATCATTTAAGCTTTTCGACTTTTTTCCGTAACATATAAGACTTTGTTATTATTGTTACATCGATGGCCTTTTTGAATTAGTTTATTTGAACTTATCTACTAACATAAACATTTGTGGGACTATTTGAGAGAACTTATGAAAACAACGTATGACATGTCCATAAGTTGCTTTCAGCCTATTTTTATAATTTCTCCATAATAATAGCTTATGAAAACAGCTTATAACTTGTTTTCACCTTATTTTTATACATTAACACCTATATGATAATCGTGTATGCTACACGTGCTTCAATAAATTGTGTATCAAAATAGAGTTCAATTAAAAAAGTTATCCTACATAACTGTGTTCATCAAATGAGTGTTTCTCAAGCAATTTCTCCTTGTATTCATTCTGTCATTGTCTAGTATGTATGTTTTGGACAATATTTTTAACAATTAACATATGAATACAGGGAATTTACACCACTTTTTGTCATTCCACATGAGAAAGAAAGGGAAAATGTTGAGGAAATAGTTGGAGAAGATTCCTCTATAATCTTCATCACCACCCCTGGACAGGTACTCAAGTATCTCATCGTTATTTTGCATGCAACAAACTTGGAGAAAAAAAATAAGATAGTAAAAAATGTCAAAACATTGAACTGTGATGTGATGAAAATGAATGAATAGATCAATAAAAAATATGCTGTTTTTGAATTGAAAAACAAAAAATAAGTTAAAATGTGAGTCTTCAAATCTTCATTTTAACAGTTTCAATTCCCTAACCGTGTTTGTATGGTTTAGCTGGCTGCTCTTATTAATGACTCAGCTGGAGTTATAGCAACCAATACCGCTGCAATTCAGCTCGCAAATGCGCGCGAAAAACCTAGGTAATTTTACCATTCACATGAATTATAATGTTTCCCTAAACGGCACATTGATTAAGCTCTGCAAGACAATCACATTGATCCCATAAAACTGTTGCTCAATTTATGCAGTGTTGCACTATTTTGCTCTAAAGAGAAGGGAAACAAGTTTGTTCCGCAGGCAGAAGAGAAGAAATGCATTGTGATATCATCCAAGACGGGGAAGTTGATCGATATAGATGTTGAGGCTGTAAAAAGTGCAATTCAAACTTTCAATGTTTCTCTAGCTTTTGCATAG

Protein sequence

>MS.gene053213.t1

MAATATYYLHTKISKPFSHFTTNTFSIPSTYPTNVSLLTSLDHPSHCYNSTRRLNLRVNAKKNNPWLDPFDDGEDPNIEYGSLFSDGKQDEDPRPPDNPNNNPYGFLKFPAGYMVEIAPLGLKVRGDVRRCCCVVSGGVYENLLFFPMIQLIKDRYPGVQIDVVGSERGKQCYELNKNVRWANVFDPDDEFPEPAEYTDFVGQLKSRYYDMILSTKLAGVGHAAYLFMTTARDRVSYVYPNVNAAGAGLFLSETFTPDSTNLSEGGYHMYHQMEDWLGRPFRNVPRQVVPPLKISLSRKLKEVVEERYTKAGVKKGRYIVIHGIQSDSKATMQSRGDPDSLLPLEIWAEIADAVREFTPLFVIPHEKERENVEEIVGEDSSIIFITTPGQLAALINDSAGVIATNTAAIQLANAREKPSVALFCSKEKGNKFVPQAEEKKCIVISSKTGKLIDIDVEAVKSAIQTFNVSLAFA