AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene053286


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 76 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTGCTACCCCTTGAAATA+TGG 0.211000 4.2:-92524882 MS.gene053286:CDS
TCCAATGATTCAGTTGATTA+AGG 0.219521 4.2:-92525964 MS.gene053286:CDS
CATGATCTTGAGCACAAAAT+TGG 0.289677 4.2:-92525516 MS.gene053286:CDS
TCCTTTCTTTACACCTGCTT+TGG 0.309889 4.2:+92524975 None:intergenic
CTCCCGCGGCATTCACATTC+GGG 0.338856 4.2:+92525429 None:intergenic
AGGTGTTGTTGTGTGGTATC+TGG 0.341951 4.2:-92526014 MS.gene053286:CDS
AAGTTAGAGGTGATGTTAGA+AGG 0.352974 4.2:-92526034 MS.gene053286:CDS
TCCTTAATCAACTGAATCAT+TGG 0.362538 4.2:+92525963 None:intergenic
GCTCCCGCGGCATTCACATT+CGG 0.367111 4.2:+92525428 None:intergenic
TCTGAAAGATTTGTACTATC+AGG 0.377252 4.2:+92525377 None:intergenic
GGAAGATATATTGTGATTCA+TGG 0.391732 4.2:-92524955 MS.gene053286:CDS
CACTTAAAATATCACTTTCA+AGG 0.403345 4.2:-92525029 MS.gene053286:CDS
TCAAGGGGTAGCAAGCTATC+AGG 0.415406 4.2:+92524889 None:intergenic
CTTGCTACCCCTTGAAATAT+GGG 0.418862 4.2:-92524881 MS.gene053286:CDS
AATGTGAATGCCGCGGGAGC+AGG 0.431918 4.2:-92525425 MS.gene053286:CDS
AGTTGAATAAGAATGTTAGA+TGG 0.432160 4.2:-92525881 MS.gene053286:CDS
CAAAGGCCACAATGCAGTCT+AGG 0.436420 4.2:-92524918 MS.gene053286:CDS
TCATTCCACATGAGAAAGAA+AGG 0.445005 4.2:-92524325 MS.gene053286:CDS
CAATTTCAGCCCATATTTCA+AGG 0.445698 4.2:+92524872 None:intergenic
GGTGTTCAGATTGATGTTGT+GGG 0.460104 4.2:-92525930 MS.gene053286:CDS
GGCTCAGGAAACTCATCGTC+CGG 0.465768 4.2:+92525843 None:intergenic
GAGCTGAATTGCAGCGGTAT+TGG 0.468926 4.2:+92523974 None:intergenic
GAAAATGTTGAGGAAATAGT+TGG 0.470649 4.2:-92524302 MS.gene053286:CDS
AGCACAAAATTGGCCGGAGT+TGG 0.475394 4.2:-92525506 MS.gene053286:CDS
CTGAAATTGCTGATGCTGTA+AGG 0.476552 4.2:-92524858 MS.gene053286:intron
TGGTGTTCAGATTGATGTTG+TGG 0.478619 4.2:-92525931 MS.gene053286:CDS
AAAGGCCACAATGCAGTCTA+GGG 0.479022 4.2:-92524917 MS.gene053286:CDS
ATCACTTTCAAGGAAGTTGA+AGG 0.487703 4.2:-92525019 MS.gene053286:CDS
AAGGAAGTTGAAGGAAGTTG+TGG 0.489133 4.2:-92525010 MS.gene053286:CDS
TCGAACTAGGTATCATCAAA+TGG 0.492338 4.2:-92525103 MS.gene053286:intron
TCAGTATACTCAGCAGGCTC+AGG 0.500874 4.2:+92525828 None:intergenic
CTTCATCACCACCCCTGGAC+AGG 0.503827 4.2:-92524261 MS.gene053286:intron
ATAATCTTCATCACCACCCC+TGG 0.505329 4.2:-92524266 MS.gene053286:CDS
GTTTCGAAACGTTCCACGGC+AGG 0.511476 4.2:-92525061 MS.gene053286:CDS
GTTGAATAAGAATGTTAGAT+GGG 0.518616 4.2:-92525880 MS.gene053286:CDS
GGTATCATCAAATGGAAGAC+TGG 0.518755 4.2:-92525095 MS.gene053286:CDS
GGTGGTGATGAAGATTATAG+AGG 0.521977 4.2:+92524271 None:intergenic
GAAGATATATTGTGATTCAT+GGG 0.526201 4.2:-92524954 MS.gene053286:CDS
ACCAAAGCAGGTGTAAAGAA+AGG 0.531255 4.2:-92524976 MS.gene053286:CDS
AGATACTTGAGTACCTGTCC+AGG 0.536335 4.2:+92524248 None:intergenic
AATTTCAGCCCATATTTCAA+GGG 0.536815 4.2:+92524873 None:intergenic
TACCCGAATGTGAATGCCGC+GGG 0.541007 4.2:-92525431 MS.gene053286:CDS
GCTCTTATTAATGACTCAGC+TGG 0.542037 4.2:-92524008 MS.gene053286:CDS
GAAGTTGAAGGAAGTTGTGG+AGG 0.547515 4.2:-92525007 MS.gene053286:CDS
ATCTTGAGCACAAAATTGGC+CGG 0.552537 4.2:-92525512 MS.gene053286:CDS
TGCCGTGGAACGTTTCGAAA+CGG 0.553199 4.2:+92525063 None:intergenic
ACAACATCAATCTGAACACC+AGG 0.556920 4.2:+92525933 None:intergenic
CATTCCACATGAGAAAGAAA+GGG 0.559120 4.2:-92524324 MS.gene053286:CDS
GATGTTGTGGGTTCTGAGAG+AGG 0.559979 4.2:-92525918 MS.gene053286:CDS
GAGGAGAGATACACCAAAGC+AGG 0.560047 4.2:-92524988 MS.gene053286:CDS
TGTTAGAAGGTGTTGTTGTG+TGG 0.566688 4.2:-92526021 MS.gene053286:CDS
ATATGCTGCATGGCCAACTC+CGG 0.567278 4.2:+92525493 None:intergenic
TGATTCAGTTGATTAAGGAT+AGG 0.569315 4.2:-92525959 MS.gene053286:CDS
GACCGTTTCGAAACGTTCCA+CGG 0.572474 4.2:-92525065 MS.gene053286:CDS
ACAAAATCAGTATACTCAGC+AGG 0.575460 4.2:+92525822 None:intergenic
GAAAGAAAGGGAAAATGTTG+AGG 0.576655 4.2:-92524312 MS.gene053286:CDS
CATCAAATGGAAGACTGGCT+AGG 0.582960 4.2:-92525090 MS.gene053286:CDS
TTGATTAAGGATAGGTACCC+TGG 0.587419 4.2:-92525951 MS.gene053286:CDS
TGGGATACAATCAGACTCAA+AGG 0.593935 4.2:-92524935 MS.gene053286:CDS
ATGTTGTGGGTTCTGAGAGA+GGG 0.600619 4.2:-92525917 MS.gene053286:CDS
ATTTGCGAGCTGAATTGCAG+CGG 0.608565 4.2:+92523968 None:intergenic
GATAGTACAAATCTTTCAGA+GGG 0.617454 4.2:-92525374 MS.gene053286:CDS
AGTGGTGGTACAACCTGCCG+TGG 0.618807 4.2:+92525048 None:intergenic
TGATAGTACAAATCTTTCAG+AGG 0.632241 4.2:-92525375 MS.gene053286:CDS
GATACTTGAGTACCTGTCCA+GGG 0.638272 4.2:+92524249 None:intergenic
CTTGAGTACCTGTCCAGGGG+TGG 0.638966 4.2:+92524253 None:intergenic
AGTACAAATCTTTCAGAGGG+AGG 0.642667 4.2:-92525371 MS.gene053286:CDS
ATTTCAGCCCATATTTCAAG+GGG 0.643244 4.2:+92524874 None:intergenic
TGTTGTTGTGTGGTATCTGG+TGG 0.649242 4.2:-92526011 MS.gene053286:CDS
ATCACCCCTAGACTGCATTG+TGG 0.675919 4.2:+92524912 None:intergenic
TCATGAATAAATATGCTGCA+TGG 0.676264 4.2:+92525483 None:intergenic
ATACTTGAGTACCTGTCCAG+GGG 0.689398 4.2:+92524250 None:intergenic
AAGGCCACAATGCAGTCTAG+GGG 0.695170 4.2:-92524916 MS.gene053286:CDS
TTACCCGAATGTGAATGCCG+CGG 0.711444 4.2:-92525432 MS.gene053286:CDS
ATAACTAACTCTATCTCGCG+CGG 0.715093 4.2:+92525457 None:intergenic
CAACATCAATCTGAACACCA+GGG 0.751591 4.2:+92525934 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTAGAAATTCGATAT+AGG - chr4.2:92524399-92524418 MS.gene053286:intron 15.0%
!! TATGGAGAAATTATAAAAAT+AGG + chr4.2:92525363-92525382 None:intergenic 15.0%
!! TCAAATAAACTAATTCAAAA+AGG + chr4.2:92525255-92525274 None:intergenic 15.0%
!!! AAACATTTTTAATGATCTAA+CGG + chr4.2:92524708-92524727 None:intergenic 15.0%
!! AACAATTAACATATGAATAC+AGG - chr4.2:92525615-92525634 MS.gene053286:intron 20.0%
!! ACAATTAACATATGAATACA+GGG - chr4.2:92525616-92525635 MS.gene053286:intron 20.0%
!! GGTGTTAATGTATAAAAATA+AGG + chr4.2:92525423-92525442 None:intergenic 20.0%
!!! GTTTTCATAAGCTATTATTA+TGG + chr4.2:92525381-92525400 None:intergenic 20.0%
!!! TAACAAAGTCTTATATGTTA+CGG + chr4.2:92525214-92525233 None:intergenic 20.0%
!!! TATTTTTCTTTAGAAATTCG+AGG - chr4.2:92524242-92524261 MS.gene053286:intron 20.0%
! AGTTGAATAAGAATGTTAGA+TGG - chr4.2:92524101-92524120 MS.gene053286:intron 25.0%
! ATAGCATTTAGACTTACATT+TGG - chr4.2:92524805-92524824 MS.gene053286:intron 25.0%
! CACTTAAAATATCACTTTCA+AGG - chr4.2:92524953-92524972 MS.gene053286:CDS 25.0%
! CTACTAACATAAACATTTGT+GGG - chr4.2:92525281-92525300 MS.gene053286:intron 25.0%
! GAAGATATATTGTGATTCAT+GGG - chr4.2:92525028-92525047 MS.gene053286:CDS 25.0%
! GTTGAATAAGAATGTTAGAT+GGG - chr4.2:92524102-92524121 MS.gene053286:intron 25.0%
! TCTACTAACATAAACATTTG+TGG - chr4.2:92525280-92525299 MS.gene053286:intron 25.0%
! TGTTATTATTGTTACATCGA+TGG - chr4.2:92525229-92525248 MS.gene053286:intron 25.0%
!! ACGAAATTTTTCTTTAACTG+AGG - chr4.2:92524837-92524856 MS.gene053286:intron 25.0%
!! ATTGTCTAGTATGTATGTTT+TGG - chr4.2:92525581-92525600 MS.gene053286:intron 25.0%
!! TTTGAAGTCAAACATATGAT+TGG - chr4.2:92524747-92524766 MS.gene053286:intron 25.0%
!!! CTTGAAAGTGATATTTTAAG+TGG + chr4.2:92524955-92524974 None:intergenic 25.0%
AAGTCGAAAAGCTTAAATGA+TGG + chr4.2:92525187-92525206 None:intergenic 30.0%
AATTTCAGCCCATATTTCAA+GGG + chr4.2:92525112-92525131 None:intergenic 30.0%
ACAATGACAGAATGAATACA+AGG + chr4.2:92525566-92525585 None:intergenic 30.0%
AGCATACACGATTATCATAT+AGG + chr4.2:92525444-92525463 None:intergenic 30.0%
ATGTAAGTCTAAATGCTATC+AGG + chr4.2:92524804-92524823 None:intergenic 30.0%
GAAAATGTTGAGGAAATAGT+TGG - chr4.2:92525680-92525699 MS.gene053286:intron 30.0%
GATAGTACAAATCTTTCAGA+GGG - chr4.2:92524608-92524627 MS.gene053286:intron 30.0%
GGAAGATATATTGTGATTCA+TGG - chr4.2:92525027-92525046 MS.gene053286:CDS 30.0%
TCATGAATAAATATGCTGCA+TGG + chr4.2:92524502-92524521 None:intergenic 30.0%
TCCAATGATTCAGTTGATTA+AGG - chr4.2:92524018-92524037 MS.gene053286:intron 30.0%
TCCTTAATCAACTGAATCAT+TGG + chr4.2:92524022-92524041 None:intergenic 30.0%
TCTGAAAGATTTGTACTATC+AGG + chr4.2:92524608-92524627 None:intergenic 30.0%
TGATAGTACAAATCTTTCAG+AGG - chr4.2:92524607-92524626 MS.gene053286:intron 30.0%
TGATTCAGTTGATTAAGGAT+AGG - chr4.2:92524023-92524042 MS.gene053286:intron 30.0%
TTATGTTATGCTTACAGAGT+AGG - chr4.2:92524435-92524454 MS.gene053286:intron 30.0%
TTTGATGAACACAGTTATGT+AGG + chr4.2:92525520-92525539 None:intergenic 30.0%
! TATTTTGCATGCAACAAACT+TGG - chr4.2:92525763-92525782 MS.gene053286:intron 30.0%
!! GAAAGTGATATTTTAAGTGG+TGG + chr4.2:92524952-92524971 None:intergenic 30.0%
!! TAGAGAGACTCTATTTTAGA+AGG + chr4.2:92525162-92525181 None:intergenic 30.0%
AAACCATACAAACACGGTTA+GGG + chr4.2:92525946-92525965 None:intergenic 35.0%
AATAGGCTGAAAGCAACTTA+TGG + chr4.2:92525346-92525365 None:intergenic 35.0%
ACAAAATCAGTATACTCAGC+AGG + chr4.2:92524163-92524182 None:intergenic 35.0%
ATCACTTTCAAGGAAGTTGA+AGG - chr4.2:92524963-92524982 MS.gene053286:CDS 35.0%
ATTTCAGCCCATATTTCAAG+GGG + chr4.2:92525111-92525130 None:intergenic 35.0%
CAATTTCAGCCCATATTTCA+AGG + chr4.2:92525113-92525132 None:intergenic 35.0%
CATGATCTTGAGCACAAAAT+TGG - chr4.2:92524466-92524485 MS.gene053286:intron 35.0%
CATTCCACATGAGAAAGAAA+GGG - chr4.2:92525658-92525677 MS.gene053286:intron 35.0%
GAAAGAAAGGGAAAATGTTG+AGG - chr4.2:92525670-92525689 MS.gene053286:intron 35.0%
TAAACCATACAAACACGGTT+AGG + chr4.2:92525947-92525966 None:intergenic 35.0%
TCATGTGGAATGACAAAAAG+TGG + chr4.2:92525650-92525669 None:intergenic 35.0%
TCATTCCACATGAGAAAGAA+AGG - chr4.2:92525657-92525676 MS.gene053286:intron 35.0%
TCGAACTAGGTATCATCAAA+TGG - chr4.2:92524879-92524898 MS.gene053286:CDS 35.0%
TTCGACAAACTCATCGAAAA+TGG + chr4.2:92524864-92524883 None:intergenic 35.0%
TTTGCCTGCTATACTTTCTA+AGG - chr4.2:92524373-92524392 MS.gene053286:intron 35.0%
! TGATTTTGTTGGTCAGCTAA+AGG - chr4.2:92524174-92524193 MS.gene053286:intron 35.0%
! TGTACCTTAGAAAGTATAGC+AGG + chr4.2:92524380-92524399 None:intergenic 35.0%
! TTTTCCCTTTCTTTCTCATG+TGG + chr4.2:92525665-92525684 None:intergenic 35.0%
!! ATGGGCTAATGTTTTTGATC+CGG - chr4.2:92524120-92524139 MS.gene053286:intron 35.0%
!!! GCTGAGTATACTGATTTTGT+TGG - chr4.2:92524163-92524182 MS.gene053286:intron 35.0%
AAGGAAGTTGAAGGAAGTTG+TGG - chr4.2:92524972-92524991 MS.gene053286:CDS 40.0%
ACAACATCAATCTGAACACC+AGG + chr4.2:92524052-92524071 None:intergenic 40.0%
ACCAAAGCAGGTGTAAAGAA+AGG - chr4.2:92525006-92525025 MS.gene053286:CDS 40.0%
AGTACAAATCTTTCAGAGGG+AGG - chr4.2:92524611-92524630 MS.gene053286:intron 40.0%
ATAACTAACTCTATCTCGCG+CGG + chr4.2:92524528-92524547 None:intergenic 40.0%
ATCTTGAGCACAAAATTGGC+CGG - chr4.2:92524470-92524489 MS.gene053286:intron 40.0%
ATTCCCTAACCGTGTTTGTA+TGG - chr4.2:92525940-92525959 MS.gene053286:CDS 40.0%
CAACATCAATCTGAACACCA+GGG + chr4.2:92524051-92524070 None:intergenic 40.0%
CCAGCTAAACCATACAAACA+CGG + chr4.2:92525952-92525971 None:intergenic 40.0%
CTGAAATTGCTGATGCTGTA+AGG - chr4.2:92525124-92525143 MS.gene053286:intron 40.0%
CTTGCTACCCCTTGAAATAT+GGG - chr4.2:92525101-92525120 MS.gene053286:intron 40.0%
GCTCTTATTAATGACTCAGC+TGG - chr4.2:92525974-92525993 MS.gene053286:CDS 40.0%
GGTATCATCAAATGGAAGAC+TGG - chr4.2:92524887-92524906 MS.gene053286:CDS 40.0%
GGTGCATTACAAGGTATGAT+CGG + chr4.2:92524274-92524293 None:intergenic 40.0%
GGTGTTCAGATTGATGTTGT+GGG - chr4.2:92524052-92524071 MS.gene053286:intron 40.0%
TCCTTTCTTTACACCTGCTT+TGG + chr4.2:92525010-92525029 None:intergenic 40.0%
TGGGATACAATCAGACTCAA+AGG - chr4.2:92525047-92525066 MS.gene053286:CDS 40.0%
TGGTGTTCAGATTGATGTTG+TGG - chr4.2:92524051-92524070 MS.gene053286:intron 40.0%
TTCGATGAGTTTGTCGAACT+AGG - chr4.2:92524866-92524885 MS.gene053286:CDS 40.0%
TTGATTAAGGATAGGTACCC+TGG - chr4.2:92524031-92524050 MS.gene053286:intron 40.0%
TTTGTTGGTCAGCTAAAGGT+TGG - chr4.2:92524178-92524197 MS.gene053286:intron 40.0%
! GGTGGTGATGAAGATTATAG+AGG + chr4.2:92525714-92525733 None:intergenic 40.0%
!! TGTTAGAAGGTGTTGTTGTG+TGG - chr4.2:92523961-92523980 MS.gene053286:CDS 40.0%
!!! AGAGTTTTGAGCTATGCAGA+CGG + chr4.2:92524345-92524364 None:intergenic 40.0%
AAAGGCCACAATGCAGTCTA+GGG - chr4.2:92525065-92525084 MS.gene053286:CDS 45.0%
AGATACTTGAGTACCTGTCC+AGG + chr4.2:92525737-92525756 None:intergenic 45.0%
ATAATCTTCATCACCACCCC+TGG - chr4.2:92525716-92525735 MS.gene053286:intron 45.0%
ATACTTGAGTACCTGTCCAG+GGG + chr4.2:92525735-92525754 None:intergenic 45.0%
ATTTGCGAGCTGAATTGCAG+CGG + chr4.2:92526017-92526036 None:intergenic 45.0%
CCGTGTTTGTATGGTTTAGC+TGG - chr4.2:92525949-92525968 MS.gene053286:CDS 45.0%
GAAGTTGAAGGAAGTTGTGG+AGG - chr4.2:92524975-92524994 MS.gene053286:CDS 45.0%
GATACTTGAGTACCTGTCCA+GGG + chr4.2:92525736-92525755 None:intergenic 45.0%
TAAAAACAATCCTGCTCCCG+CGG + chr4.2:92524570-92524589 None:intergenic 45.0%
TGTTGTTGTGTGGTATCTGG+TGG - chr4.2:92523971-92523990 MS.gene053286:CDS 45.0%
! CATCAAATGGAAGACTGGCT+AGG - chr4.2:92524892-92524911 MS.gene053286:CDS 45.0%
! GCTTGCTACCCCTTGAAATA+TGG - chr4.2:92525100-92525119 MS.gene053286:intron 45.0%
! TTGGTCAGCTAAAGGTTGGT+TGG - chr4.2:92524182-92524201 MS.gene053286:intron 45.0%
!! AGGTGTTGTTGTGTGGTATC+TGG - chr4.2:92523968-92523987 MS.gene053286:CDS 45.0%
!! ATGTTGTGGGTTCTGAGAGA+GGG - chr4.2:92524065-92524084 MS.gene053286:intron 45.0%
AAGGCCACAATGCAGTCTAG+GGG - chr4.2:92525066-92525085 MS.gene053286:CDS 50.0%
AGACGGACACTCCTTGGATT+AGG + chr4.2:92524328-92524347 None:intergenic 50.0%
AGCACAAAATTGGCCGGAGT+TGG - chr4.2:92524476-92524495 MS.gene053286:intron 50.0%
ATATGCTGCATGGCCAACTC+CGG + chr4.2:92524492-92524511 None:intergenic 50.0%
ATCACCCCTAGACTGCATTG+TGG + chr4.2:92525073-92525092 None:intergenic 50.0%
ATCAGGACACGCCTAATCCA+AGG - chr4.2:92524314-92524333 MS.gene053286:CDS 50.0%
CAAAGGCCACAATGCAGTCT+AGG - chr4.2:92525064-92525083 MS.gene053286:CDS 50.0%
GACCGTTTCGAAACGTTCCA+CGG - chr4.2:92524917-92524936 MS.gene053286:CDS 50.0%
GAGCTGAATTGCAGCGGTAT+TGG + chr4.2:92526011-92526030 None:intergenic 50.0%
GAGGAGAGATACACCAAAGC+AGG - chr4.2:92524994-92525013 MS.gene053286:CDS 50.0%
TCAAGGGGTAGCAAGCTATC+AGG + chr4.2:92525096-92525115 None:intergenic 50.0%
TCAGTATACTCAGCAGGCTC+AGG + chr4.2:92524157-92524176 None:intergenic 50.0%
TGCCGTGGAACGTTTCGAAA+CGG + chr4.2:92524922-92524941 None:intergenic 50.0%
TTACCCGAATGTGAATGCCG+CGG - chr4.2:92524550-92524569 MS.gene053286:intron 50.0%
!! GATGTTGTGGGTTCTGAGAG+AGG - chr4.2:92524064-92524083 MS.gene053286:intron 50.0%
!! GTCGGTATCGGTGCATTACA+AGG + chr4.2:92524283-92524302 None:intergenic 50.0%
CTATGCAGACGGACACTCCT+TGG + chr4.2:92524334-92524353 None:intergenic 55.0%
GGCTCAGGAAACTCATCGTC+CGG + chr4.2:92524142-92524161 None:intergenic 55.0%
GTTTCGAAACGTTCCACGGC+AGG - chr4.2:92524921-92524940 MS.gene053286:CDS 55.0%
TACCCGAATGTGAATGCCGC+GGG - chr4.2:92524551-92524570 MS.gene053286:intron 55.0%
TCCTGATGTCAGACACGCGT+CGG + chr4.2:92524301-92524320 None:intergenic 55.0%
! TGTCAGACACGCGTCGGTAT+CGG + chr4.2:92524295-92524314 None:intergenic 55.0%
AATGTGAATGCCGCGGGAGC+AGG - chr4.2:92524557-92524576 MS.gene053286:intron 60.0%
ACCGACGCGTGTCTGACATC+AGG - chr4.2:92524297-92524316 MS.gene053286:CDS 60.0%
AGTGGTGGTACAACCTGCCG+TGG + chr4.2:92524937-92524956 None:intergenic 60.0%
CTCCCGCGGCATTCACATTC+GGG + chr4.2:92524556-92524575 None:intergenic 60.0%
CTTCATCACCACCCCTGGAC+AGG - chr4.2:92525721-92525740 MS.gene053286:intron 60.0%
CTTGAGTACCTGTCCAGGGG+TGG + chr4.2:92525732-92525751 None:intergenic 60.0%
GCTCCCGCGGCATTCACATT+CGG + chr4.2:92524557-92524576 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 92523951 92526053 92523951 ID=MS.gene053286
chr4.2 mRNA 92523951 92526053 92523951 ID=MS.gene053286.t1;Parent=MS.gene053286
chr4.2 exon 92525809 92526053 92525809 ID=MS.gene053286.t1.exon1;Parent=MS.gene053286.t1
chr4.2 CDS 92525809 92526053 92525809 ID=cds.MS.gene053286.t1;Parent=MS.gene053286.t1
chr4.2 exon 92525362 92525552 92525362 ID=MS.gene053286.t1.exon2;Parent=MS.gene053286.t1
chr4.2 CDS 92525362 92525552 92525362 ID=cds.MS.gene053286.t1;Parent=MS.gene053286.t1
chr4.2 exon 92524859 92525116 92524859 ID=MS.gene053286.t1.exon3;Parent=MS.gene053286.t1
chr4.2 CDS 92524859 92525116 92524859 ID=cds.MS.gene053286.t1;Parent=MS.gene053286.t1
chr4.2 exon 92524262 92524367 92524262 ID=MS.gene053286.t1.exon4;Parent=MS.gene053286.t1
chr4.2 CDS 92524262 92524367 92524262 ID=cds.MS.gene053286.t1;Parent=MS.gene053286.t1
chr4.2 exon 92523951 92524036 92523951 ID=MS.gene053286.t1.exon5;Parent=MS.gene053286.t1
chr4.2 CDS 92523951 92524036 92523951 ID=cds.MS.gene053286.t1;Parent=MS.gene053286.t1
Gene Sequence

>MS.gene053286

TTAGAGGTGATGTTAGAAGGTGTTGTTGTGTGGTATCTGGTGGTGTTTATGAGAATCTGTTGTTTTTTCCAATGATTCAGTTGATTAAGGATAGGTACCCTGGTGTTCAGATTGATGTTGTGGGTTCTGAGAGAGGGAAACAATGTTATGAGTTGAATAAGAATGTTAGATGGGCTAATGTTTTTGATCCGGACGATGAGTTTCCTGAGCCTGCTGAGTATACTGATTTTGTTGGTCAGCTAAAGGTTGGTTGGCAAGTATATTTTTTCAATAGTTTGTGTAAAGTTTAGATATTTTTCTTTAGAAATTCGAGGCTGAAACCGATCATACCTTGTAATGCACCGATACCGACGCGTGTCTGACATCAGGACACGCCTAATCCAAGGAGTGTCCGTCTGCATAGCTCAAAACTCTTAACAGAATTTGCCTGCTATACTTTCTAAGGTACATATATTAGAAATTCGATATAGGAACTGATTTATTGTTATGTTATGCTTACAGAGTAGGTACTATGACATGATCTTGAGCACAAAATTGGCCGGAGTTGGCCATGCAGCATATTTATTCATGACAACCGCGCGAGATAGAGTTAGTTATGTTTACCCGAATGTGAATGCCGCGGGAGCAGGATTGTTTTTATCTGAAACATTCACGCCTGATAGTACAAATCTTTCAGAGGGAGGATATCATATGTGAGTTTGTGTATGTTTAGAATCACGATGTAAACACTTTTTACACTGACAATCAATCTTAACCGTTAGATCATTAAAAATGTTTGAATTTAATCATAACTACTTTTGAAGTCAAACATATGATTGGTTATAATTCGTTGACAGTGTAAAACTTTTTACCTGATAGCATTTAGACTTACATTTGGTAGATTTTCACGAAATTTTTCTTTAACTGAGGACCATTTTCGATGAGTTTGTCGAACTAGGTATCATCAAATGGAAGACTGGCTAGGAAGACCGTTTCGAAACGTTCCACGGCAGGTTGTACCACCACTTAAAATATCACTTTCAAGGAAGTTGAAGGAAGTTGTGGAGGAGAGATACACCAAAGCAGGTGTAAAGAAAGGAAGATATATTGTGATTCATGGGATACAATCAGACTCAAAGGCCACAATGCAGTCTAGGGGTGATCCTGATAGCTTGCTACCCCTTGAAATATGGGCTGAAATTGCTGATGCTGTAAGGTATGAAATATTTCCTTCTAAAATAGAGTCTCTCTATGCCATCATTTAAGCTTTTCGACTTTTTTCCGTAACATATAAGACTTTGTTATTATTGTTACATCGATGGCCTTTTTGAATTAGTTTATTTGAACTTATCTACTAACATAAACATTTGTGGGACTATTTGAGAGAACTTATGAAAACAACGTATGACATGTCCATAAGTTGCTTTCAGCCTATTTTTATAATTTCTCCATAATAATAGCTTATGAAAACAGCTTATAACTTGTTTTCACCTTATTTTTATACATTAACACCTATATGATAATCGTGTATGCTACACGTGCTTCAATAAATTGTGTATCAAAATAGAGTTCAATTAAAAAAGTTATCCTACATAACTGTGTTCATCAAATGAGTGTTTCTCAAGCAATTTCTCCTTGTATTCATTCTGTCATTGTCTAGTATGTATGTTTTGGACAATATTTTTAACAATTAACATATGAATACAGGGAATTTACACCACTTTTTGTCATTCCACATGAGAAAGAAAGGGAAAATGTTGAGGAAATAGTTGGAGAAGATTCCTCTATAATCTTCATCACCACCCCTGGACAGGTACTCAAGTATCTCATCGTTATTTTGCATGCAACAAACTTGGAGAAAAAAAATAAGATAGTAAAAAATGTCAAAACATTGAACTGTGATGTGATGAAAATGAATGAATAGATCAATAAAAAATATGCTGTTTTTGAATTGAAAAACAAAAAATAAGTTAAAATGTGAGTCTTCAAATCTTCATTTTAACAGTTTCAATTCCCTAACCGTGTTTGTATGGTTTAGCTGGCTGCTCTTATTAATGACTCAGCTGGAGTTATAGCAACCAATACCGCTGCAATTCAGCTCGCAAATGCGCGCGAAAAACCTAG

Protein sequence

>MS.gene053286.t1

LEVMLEGVVVWYLVVFMRICCFFQUFSULRIGTLVFRLMLWVLREGNNVMSUIRMLDGLMFLIRTMSFLSLLSILILLVSURVGTMTUSUAQNWPELAMQHIYSUQPREIELVMFTRMUMPREQDCFYLKHSRLIVQIFQREDIICIIKWKTGUEDRFETFHGRLYHHLKYHFQGSURKLWRRDTPKQVURKEDILUFMGYNQTQRPQCSLGVILIACYPLKYGLKLLMLUGNLHHFLSFHMRKKGKMLRKULEKIPLUSSSPPLDSWLLLLMTQLELUQPIPLQFSSQMRAKNL