Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35801.t1 | XP_024632417.1 | 96.2 | 132 | 5 | 0 | 1 | 132 | 1 | 132 | 1.60E-63 | 251.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35801.t1 | Q9FM54 | 64.0 | 125 | 44 | 1 | 5 | 128 | 4 | 128 | 1.3e-37 | 157.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35801.t1 | A0A072VAF7 | 96.2 | 132 | 5 | 0 | 1 | 132 | 1 | 132 | 1.2e-63 | 251.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050317 | MS.gene35801 | 0.825748 | 3.96E-54 | -1.69E-46 |
MS.gene051245 | MS.gene35801 | 0.840218 | 9.93E-58 | -1.69E-46 |
MS.gene054823 | MS.gene35801 | 0.811279 | 7.58E-51 | -1.69E-46 |
MS.gene055311 | MS.gene35801 | 0.821572 | 3.76E-53 | -1.69E-46 |
MS.gene056787 | MS.gene35801 | 0.817591 | 3.05E-52 | -1.69E-46 |
MS.gene058646 | MS.gene35801 | 0.815768 | 7.80E-52 | -1.69E-46 |
MS.gene058654 | MS.gene35801 | 0.829715 | 4.41E-55 | -1.69E-46 |
MS.gene060084 | MS.gene35801 | 0.81635 | 5.79E-52 | -1.69E-46 |
MS.gene06010 | MS.gene35801 | 0.805696 | 1.18E-49 | -1.69E-46 |
MS.gene060297 | MS.gene35801 | 0.814538 | 1.46E-51 | -1.69E-46 |
MS.gene060869 | MS.gene35801 | 0.820189 | 7.82E-53 | -1.69E-46 |
MS.gene060870 | MS.gene35801 | 0.819711 | 1.01E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35801.t1 | MTR_2g088720 | 96.212 | 132 | 5 | 0 | 1 | 132 | 1 | 132 | 2.65e-89 | 255 |
MS.gene35801.t1 | MTR_2g088720 | 96.212 | 132 | 5 | 0 | 1 | 132 | 12 | 143 | 3.32e-89 | 255 |
MS.gene35801.t1 | MTR_7g106600 | 83.077 | 130 | 22 | 0 | 4 | 133 | 1 | 130 | 1.43e-76 | 223 |
MS.gene35801.t1 | MTR_7g106580 | 78.947 | 133 | 28 | 0 | 1 | 133 | 1 | 133 | 1.97e-73 | 215 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene35801.t1 | AT5G62980 | 63.492 | 126 | 45 | 1 | 5 | 129 | 4 | 129 | 5.87e-52 | 160 |
MS.gene35801.t1 | AT5G62980 | 63.492 | 126 | 45 | 1 | 5 | 129 | 4 | 129 | 5.87e-52 | 160 |
MS.gene35801.t1 | AT3G11750 | 62.810 | 121 | 44 | 1 | 10 | 129 | 21 | 141 | 9.45e-51 | 158 |
MS.gene35801.t1 | AT3G21730 | 52.500 | 120 | 56 | 1 | 11 | 129 | 40 | 159 | 5.10e-41 | 134 |
MS.gene35801.t1 | AT3G21730 | 46.032 | 63 | 33 | 1 | 68 | 129 | 13 | 75 | 1.50e-13 | 62.0 |
Find 31 sgRNAs with CRISPR-Local
Find 36 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAAGGGGATTGACTTTCTA+TGG | 0.199149 | 2.4:-12727193 | MS.gene35801:CDS |
AAAGCCTCATGTGGCGATTC+AGG | 0.223719 | 2.4:-12726915 | MS.gene35801:CDS |
GAAGGTGTTGATGCATTAAT+AGG | 0.255291 | 2.4:-12727232 | MS.gene35801:CDS |
GGGGAGACAAACTTATTCTA+AGG | 0.345136 | 2.4:-12727210 | MS.gene35801:CDS |
AGGACCAGCTCAAAACCTTC+TGG | 0.360872 | 2.4:-12727014 | MS.gene35801:CDS |
TAAAATTGCAATCGCTACTT+TGG | 0.362829 | 2.4:-12726978 | MS.gene35801:CDS |
AAGGTGTTGATGCATTAATA+GGG | 0.411585 | 2.4:-12727231 | MS.gene35801:CDS |
TCATGTGGCGATTCAGGGTC+CGG | 0.432381 | 2.4:-12726909 | MS.gene35801:CDS |
ATAGCTAAGAAAGTTATTGA+AGG | 0.467494 | 2.4:-12727034 | MS.gene35801:CDS |
AAGCCTCATGTGGCGATTCA+GGG | 0.468423 | 2.4:-12726914 | MS.gene35801:CDS |
TCAACGCCTAAGTAATCAAC+CGG | 0.493700 | 2.4:+12726890 | None:intergenic |
ACGGAGCAATAGCGGAAGAA+AGG | 0.526769 | 2.4:-12727165 | MS.gene35801:CDS |
CAGGGTCCGGTTGATTACTT+AGG | 0.529018 | 2.4:-12726896 | MS.gene35801:CDS |
TGGTTGGATCTCAAACCAGC+TGG | 0.535894 | 2.4:-12727106 | MS.gene35801:CDS |
GCGCGCGCGCATAGAATGGA+AGG | 0.548883 | 2.4:-12727250 | None:intergenic |
GGGAGACAAACTTATTCTAA+GGG | 0.552621 | 2.4:-12727209 | MS.gene35801:CDS |
GGTAGACGTGGATGCTTGGT+TGG | 0.560167 | 2.4:-12727122 | MS.gene35801:CDS |
AGGTGTTGATGCATTAATAG+GGG | 0.577512 | 2.4:-12727230 | MS.gene35801:CDS |
TCTGCTGTTCGTGTGAAGGT+TGG | 0.579288 | 2.4:-12726938 | MS.gene35801:CDS |
TTGTGGTAGACGTGGATGCT+TGG | 0.584289 | 2.4:-12727126 | MS.gene35801:CDS |
TATGGGCCACTGACTCCAGA+AGG | 0.586966 | 2.4:+12726999 | None:intergenic |
GACGCTAGGACAGAAGTTTG+TGG | 0.591207 | 2.4:-12727143 | MS.gene35801:CDS |
TCAAAACCTTCTGGAGTCAG+TGG | 0.595009 | 2.4:-12727005 | MS.gene35801:CDS |
ATAGCGGAAGAAAGGACGCT+AGG | 0.622684 | 2.4:-12727157 | MS.gene35801:CDS |
GATATCTGCTGTTCGTGTGA+AGG | 0.625108 | 2.4:-12726942 | MS.gene35801:CDS |
GGACCCTGAATCGCCACATG+AGG | 0.659244 | 2.4:+12726911 | None:intergenic |
GGTGTTGATGCATTAATAGG+GGG | 0.666097 | 2.4:-12727229 | MS.gene35801:CDS |
ACAGAAGTTTGTGGTAGACG+TGG | 0.680810 | 2.4:-12727134 | MS.gene35801:CDS |
GTTGAGATTCTGAGACGCAG+AGG | 0.704169 | 2.4:-12726872 | MS.gene35801:CDS |
GAAGGTTGGAAAGCCTCATG+TGG | 0.704756 | 2.4:-12726924 | MS.gene35801:CDS |
GGAGACAAACTTATTCTAAG+GGG | 0.705478 | 2.4:-12727208 | MS.gene35801:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | ATAGCTAAGAAAGTTATTGA+AGG | - | chr2.4:12727057-12727076 | MS.gene35801:CDS | 25.0% |
TAAAATTGCAATCGCTACTT+TGG | - | chr2.4:12727113-12727132 | MS.gene35801:CDS | 30.0% | |
! | AAGTAGCGATTGCAATTTTA+TGG | + | chr2.4:12727113-12727132 | None:intergenic | 30.0% |
! | AGTAGCGATTGCAATTTTAT+GGG | + | chr2.4:12727112-12727131 | None:intergenic | 30.0% |
! | TTGACTTTCTATGGTTTTCA+CGG | - | chr2.4:12726907-12726926 | MS.gene35801:CDS | 30.0% |
!! | AAGGTGTTGATGCATTAATA+GGG | - | chr2.4:12726860-12726879 | MS.gene35801:CDS | 30.0% |
GGAGACAAACTTATTCTAAG+GGG | - | chr2.4:12726883-12726902 | MS.gene35801:CDS | 35.0% | |
GGGAGACAAACTTATTCTAA+GGG | - | chr2.4:12726882-12726901 | MS.gene35801:CDS | 35.0% | |
! | AAGTTATCAGATTTTCCAGC+TGG | + | chr2.4:12727003-12727022 | None:intergenic | 35.0% |
!! | AGGTGTTGATGCATTAATAG+GGG | - | chr2.4:12726861-12726880 | MS.gene35801:CDS | 35.0% |
!! | GAAGGTGTTGATGCATTAAT+AGG | - | chr2.4:12726859-12726878 | MS.gene35801:CDS | 35.0% |
GGGGAGACAAACTTATTCTA+AGG | - | chr2.4:12726881-12726900 | MS.gene35801:CDS | 40.0% | |
TCAACGCCTAAGTAATCAAC+CGG | + | chr2.4:12727204-12727223 | None:intergenic | 40.0% | |
! | CTAAGGGGATTGACTTTCTA+TGG | - | chr2.4:12726898-12726917 | MS.gene35801:CDS | 40.0% |
!! | GGTGTTGATGCATTAATAGG+GGG | - | chr2.4:12726862-12726881 | MS.gene35801:CDS | 40.0% |
ACAGAAGTTTGTGGTAGACG+TGG | - | chr2.4:12726957-12726976 | MS.gene35801:CDS | 45.0% | |
GATATCTGCTGTTCGTGTGA+AGG | - | chr2.4:12727149-12727168 | MS.gene35801:CDS | 45.0% | |
! | TGGTTTTCACGGAGCAATAG+CGG | - | chr2.4:12726918-12726937 | MS.gene35801:CDS | 45.0% |
!! | TCAAAACCTTCTGGAGTCAG+TGG | - | chr2.4:12727086-12727105 | MS.gene35801:CDS | 45.0% |
AAAGCCTCATGTGGCGATTC+AGG | - | chr2.4:12727176-12727195 | MS.gene35801:CDS | 50.0% | |
AAGCCTCATGTGGCGATTCA+GGG | - | chr2.4:12727177-12727196 | MS.gene35801:CDS | 50.0% | |
AGGACCAGCTCAAAACCTTC+TGG | - | chr2.4:12727077-12727096 | MS.gene35801:CDS | 50.0% | |
CAGGGTCCGGTTGATTACTT+AGG | - | chr2.4:12727195-12727214 | MS.gene35801:CDS | 50.0% | |
GAAGGTTGGAAAGCCTCATG+TGG | - | chr2.4:12727167-12727186 | MS.gene35801:CDS | 50.0% | |
GACGCTAGGACAGAAGTTTG+TGG | - | chr2.4:12726948-12726967 | MS.gene35801:CDS | 50.0% | |
TCTGCTGTTCGTGTGAAGGT+TGG | - | chr2.4:12727153-12727172 | MS.gene35801:CDS | 50.0% | |
TGGTTGGATCTCAAACCAGC+TGG | - | chr2.4:12726985-12727004 | MS.gene35801:CDS | 50.0% | |
TTGTGGTAGACGTGGATGCT+TGG | - | chr2.4:12726965-12726984 | MS.gene35801:CDS | 50.0% | |
! | ACGGAGCAATAGCGGAAGAA+AGG | - | chr2.4:12726926-12726945 | MS.gene35801:CDS | 50.0% |
! | ATAGCGGAAGAAAGGACGCT+AGG | - | chr2.4:12726934-12726953 | MS.gene35801:CDS | 50.0% |
!! | GTTGAGATTCTGAGACGCAG+AGG | - | chr2.4:12727219-12727238 | MS.gene35801:CDS | 50.0% |
!!! | GACTCCAGAAGGTTTTGAGC+TGG | + | chr2.4:12727084-12727103 | None:intergenic | 50.0% |
GGTAGACGTGGATGCTTGGT+TGG | - | chr2.4:12726969-12726988 | MS.gene35801:CDS | 55.0% | |
TCATGTGGCGATTCAGGGTC+CGG | - | chr2.4:12727182-12727201 | MS.gene35801:CDS | 55.0% | |
!! | TATGGGCCACTGACTCCAGA+AGG | + | chr2.4:12727095-12727114 | None:intergenic | 55.0% |
GGACCCTGAATCGCCACATG+AGG | + | chr2.4:12727183-12727202 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 12726856 | 12727257 | 12726856 | ID=MS.gene35801 |
chr2.4 | mRNA | 12726856 | 12727257 | 12726856 | ID=MS.gene35801.t1;Parent=MS.gene35801 |
chr2.4 | exon | 12726856 | 12727257 | 12726856 | ID=MS.gene35801.t1.exon1;Parent=MS.gene35801.t1 |
chr2.4 | CDS | 12726856 | 12727257 | 12726856 | ID=cds.MS.gene35801.t1;Parent=MS.gene35801.t1 |
Gene Sequence |
Protein sequence |