Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36883.t1 | XP_013443654.1 | 96.2 | 288 | 8 | 2 | 1 | 286 | 1 | 287 | 2.70E-164 | 587.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36883.t1 | Q9LEX0 | 59.7 | 290 | 111 | 3 | 1 | 287 | 1 | 287 | 1.8e-100 | 367.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36883.t1 | A0A072TJF7 | 96.2 | 288 | 8 | 2 | 1 | 286 | 1 | 287 | 2.0e-164 | 587.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049254 | MS.gene36883 | 0.800887 | 1.17E-48 | -1.69E-46 |
MS.gene051181 | MS.gene36883 | 0.816637 | 4.99E-52 | -1.69E-46 |
MS.gene052519 | MS.gene36883 | 0.834668 | 2.62E-56 | -1.69E-46 |
MS.gene053272 | MS.gene36883 | -0.802391 | 5.74E-49 | -1.69E-46 |
MS.gene054651 | MS.gene36883 | 0.802553 | 5.31E-49 | -1.69E-46 |
MS.gene055801 | MS.gene36883 | 0.810336 | 1.21E-50 | -1.69E-46 |
MS.gene055818 | MS.gene36883 | 0.808328 | 3.27E-50 | -1.69E-46 |
MS.gene057208 | MS.gene36883 | 0.817928 | 2.56E-52 | -1.69E-46 |
MS.gene058008 | MS.gene36883 | 0.812915 | 3.33E-51 | -1.69E-46 |
MS.gene058783 | MS.gene36883 | 0.809994 | 1.44E-50 | -1.69E-46 |
MS.gene05985 | MS.gene36883 | -0.800546 | 1.37E-48 | -1.69E-46 |
MS.gene060935 | MS.gene36883 | 0.810176 | 1.31E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36883.t1 | MTR_0002s0020 | 95.848 | 289 | 9 | 2 | 1 | 287 | 1 | 288 | 0.0 | 573 |
MS.gene36883.t1 | MTR_4g102770 | 61.628 | 258 | 97 | 1 | 23 | 280 | 19 | 274 | 5.03e-123 | 353 |
MS.gene36883.t1 | MTR_1g101390 | 61.961 | 255 | 94 | 1 | 23 | 277 | 28 | 279 | 1.01e-120 | 347 |
MS.gene36883.t1 | MTR_0113s0040 | 56.475 | 278 | 117 | 2 | 1 | 278 | 1 | 274 | 2.25e-119 | 343 |
MS.gene36883.t1 | MTR_5g010800 | 55.245 | 286 | 116 | 4 | 1 | 285 | 1 | 275 | 1.87e-115 | 333 |
MS.gene36883.t1 | MTR_7g103380 | 54.639 | 291 | 114 | 3 | 1 | 280 | 1 | 284 | 1.71e-109 | 319 |
MS.gene36883.t1 | MTR_7g112560 | 26.217 | 267 | 162 | 5 | 26 | 275 | 4 | 252 | 8.26e-33 | 121 |
MS.gene36883.t1 | MTR_4g023570 | 26.984 | 252 | 159 | 5 | 26 | 275 | 4 | 232 | 5.30e-29 | 110 |
MS.gene36883.t1 | MTR_7g112550 | 25.448 | 279 | 173 | 6 | 26 | 277 | 10 | 280 | 7.12e-23 | 95.9 |
MS.gene36883.t1 | MTR_1g079140 | 36.806 | 144 | 89 | 2 | 25 | 167 | 15 | 157 | 1.34e-22 | 95.5 |
MS.gene36883.t1 | MTR_1g079260 | 29.384 | 211 | 127 | 4 | 25 | 232 | 6 | 197 | 4.05e-22 | 93.6 |
MS.gene36883.t1 | MTR_1g083580 | 30.303 | 198 | 118 | 5 | 26 | 219 | 11 | 192 | 6.79e-22 | 92.8 |
MS.gene36883.t1 | MTR_1g079180 | 31.515 | 165 | 108 | 3 | 25 | 186 | 6 | 168 | 2.46e-21 | 91.3 |
MS.gene36883.t1 | MTR_1g079380 | 30.806 | 211 | 124 | 4 | 23 | 230 | 4 | 195 | 6.79e-21 | 90.5 |
MS.gene36883.t1 | MTR_1g079460 | 32.298 | 161 | 104 | 3 | 25 | 182 | 6 | 164 | 1.69e-20 | 89.0 |
MS.gene36883.t1 | MTR_1g079200 | 25.670 | 261 | 177 | 7 | 25 | 275 | 6 | 259 | 7.85e-20 | 87.0 |
MS.gene36883.t1 | MTR_1g079230 | 33.553 | 152 | 91 | 3 | 22 | 170 | 3 | 147 | 9.69e-20 | 87.0 |
MS.gene36883.t1 | MTR_1g100597 | 25.362 | 276 | 171 | 9 | 25 | 277 | 6 | 269 | 1.64e-19 | 86.3 |
MS.gene36883.t1 | MTR_1g079370 | 25.556 | 270 | 177 | 8 | 22 | 277 | 3 | 262 | 2.28e-19 | 85.9 |
MS.gene36883.t1 | MTR_1g100613 | 34.848 | 132 | 80 | 2 | 40 | 170 | 6 | 132 | 1.29e-18 | 83.2 |
MS.gene36883.t1 | MTR_1g079850 | 31.056 | 161 | 107 | 3 | 25 | 182 | 6 | 165 | 2.91e-18 | 83.2 |
MS.gene36883.t1 | MTR_3g452600 | 24.910 | 277 | 164 | 8 | 23 | 277 | 10 | 264 | 6.95e-17 | 79.0 |
MS.gene36883.t1 | MTR_1g079410 | 30.137 | 146 | 100 | 2 | 26 | 170 | 11 | 155 | 2.02e-15 | 75.1 |
MS.gene36883.t1 | MTR_1g079400 | 29.452 | 146 | 101 | 2 | 26 | 170 | 15 | 159 | 5.36e-14 | 70.9 |
MS.gene36883.t1 | MTR_1g079250 | 32.000 | 150 | 93 | 3 | 25 | 170 | 6 | 150 | 1.19e-13 | 70.1 |
MS.gene36883.t1 | MTR_3g450990 | 29.054 | 148 | 91 | 5 | 23 | 167 | 10 | 146 | 7.05e-13 | 67.8 |
MS.gene36883.t1 | MTR_3g006850 | 26.816 | 179 | 112 | 6 | 19 | 182 | 13 | 187 | 6.09e-12 | 65.5 |
MS.gene36883.t1 | MTR_7g096300 | 26.131 | 199 | 124 | 4 | 25 | 220 | 6 | 184 | 1.01e-11 | 65.5 |
MS.gene36883.t1 | MTR_1g079350 | 26.106 | 226 | 129 | 9 | 25 | 234 | 6 | 209 | 1.33e-11 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36883.t1 | AT3G61060 | 61.429 | 280 | 102 | 3 | 1 | 277 | 1 | 277 | 5.71e-126 | 360 |
MS.gene36883.t1 | AT3G61060 | 61.210 | 281 | 102 | 4 | 1 | 277 | 1 | 278 | 4.54e-124 | 356 |
MS.gene36883.t1 | AT1G12710 | 57.706 | 279 | 111 | 3 | 4 | 281 | 11 | 283 | 1.40e-113 | 329 |
MS.gene36883.t1 | AT5G52120 | 55.598 | 259 | 112 | 1 | 23 | 278 | 21 | 279 | 2.93e-111 | 323 |
MS.gene36883.t1 | AT3G53000 | 53.041 | 296 | 122 | 4 | 1 | 285 | 1 | 290 | 3.11e-105 | 308 |
MS.gene36883.t1 | AT1G12710 | 50.156 | 321 | 111 | 4 | 4 | 281 | 11 | 325 | 1.16e-104 | 308 |
MS.gene36883.t1 | AT1G63090 | 55.914 | 279 | 114 | 3 | 4 | 281 | 11 | 281 | 4.62e-104 | 305 |
MS.gene36883.t1 | AT1G09155 | 25.342 | 292 | 161 | 6 | 26 | 277 | 3 | 277 | 2.28e-23 | 97.1 |
MS.gene36883.t1 | AT2G02360 | 32.278 | 158 | 96 | 3 | 27 | 181 | 18 | 167 | 2.88e-23 | 96.7 |
MS.gene36883.t1 | AT1G80110 | 27.757 | 263 | 172 | 7 | 23 | 277 | 1 | 253 | 5.97e-23 | 95.5 |
MS.gene36883.t1 | AT2G02240 | 27.099 | 262 | 166 | 7 | 26 | 275 | 64 | 312 | 6.19e-23 | 96.7 |
MS.gene36883.t1 | AT2G02230 | 34.104 | 173 | 101 | 5 | 22 | 189 | 31 | 195 | 4.21e-22 | 94.4 |
MS.gene36883.t1 | AT2G02340 | 31.288 | 163 | 103 | 3 | 23 | 182 | 36 | 192 | 1.78e-21 | 92.4 |
MS.gene36883.t1 | AT5G24560 | 26.667 | 165 | 106 | 3 | 25 | 182 | 5 | 161 | 9.71e-21 | 87.8 |
MS.gene36883.t1 | AT2G02250 | 29.310 | 174 | 111 | 4 | 25 | 194 | 49 | 214 | 2.15e-19 | 86.7 |
MS.gene36883.t1 | AT1G56250 | 28.641 | 206 | 128 | 3 | 26 | 229 | 4 | 192 | 1.10e-18 | 84.3 |
MS.gene36883.t1 | AT2G02320 | 24.825 | 286 | 155 | 11 | 23 | 277 | 40 | 296 | 5.88e-18 | 82.4 |
MS.gene36883.t1 | AT2G02310 | 33.125 | 160 | 96 | 5 | 25 | 181 | 47 | 198 | 1.07e-17 | 82.0 |
MS.gene36883.t1 | AT2G02350 | 31.507 | 146 | 86 | 4 | 23 | 164 | 24 | 159 | 2.36e-17 | 80.9 |
MS.gene36883.t1 | AT1G56240 | 24.068 | 295 | 161 | 8 | 26 | 277 | 4 | 278 | 1.23e-16 | 78.6 |
MS.gene36883.t1 | AT2G02300 | 24.812 | 266 | 160 | 8 | 25 | 275 | 36 | 276 | 1.07e-13 | 70.1 |
Find 84 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTAGTTCTGGTGCTGAATT+AGG | 0.146532 | 8.4:-63803258 | MS.gene36883:CDS |
TTGCTTATCTTCATCAAATT+TGG | 0.161534 | 8.4:-63801275 | MS.gene36883:CDS |
TGTATGTCCCTACTGGAAAT+TGG | 0.254973 | 8.4:+63801223 | None:intergenic |
GGCATTGGTGTTGATGTATT+TGG | 0.267377 | 8.4:-63803415 | MS.gene36883:CDS |
TTACTTTGGTTTAGGAAATC+TGG | 0.291239 | 8.4:-63802614 | MS.gene36883:intron |
AACTCGTCGGCCGAGCTTCT+TGG | 0.292282 | 8.4:+63801167 | None:intergenic |
TTCCAAAGCGTTAAGGATTA+CGG | 0.314495 | 8.4:-63802553 | MS.gene36883:CDS |
CTGGATTGTCCAAATGAGTA+TGG | 0.340026 | 8.4:+63801061 | None:intergenic |
GTCGTCAGCTGAAACTTTGC+AGG | 0.342371 | 8.4:+63801108 | None:intergenic |
GTTCTATGAGGCCAAGGCTT+GGG | 0.361339 | 8.4:-63803458 | MS.gene36883:CDS |
TGCTGTATCCCATACTCATT+TGG | 0.366142 | 8.4:-63801070 | MS.gene36883:CDS |
CCCCGTAATCCTTAACGCTT+TGG | 0.366232 | 8.4:+63802551 | None:intergenic |
GGATAGATGATCGCAGATAT+TGG | 0.367089 | 8.4:-63802530 | MS.gene36883:CDS |
TCCAAAGCGTTAAGGATTAC+GGG | 0.374198 | 8.4:-63802552 | MS.gene36883:CDS |
GAGGATGATACTACTAGTTC+TGG | 0.381998 | 8.4:-63803270 | MS.gene36883:CDS |
GTAAGTTAGCACGATTGAAT+AGG | 0.388338 | 8.4:-63803377 | MS.gene36883:CDS |
GTTTATCATGGGGAAAGCTT+TGG | 0.404604 | 8.4:-63803292 | MS.gene36883:CDS |
TAAGTTAGCACGATTGAATA+GGG | 0.418486 | 8.4:-63803376 | MS.gene36883:CDS |
CATGTGTATGTGATGGGGAT+GGG | 0.419594 | 8.4:-63803488 | MS.gene36883:CDS |
CTAGTTCTGGTGCTGAATTA+GGG | 0.423762 | 8.4:-63803257 | MS.gene36883:CDS |
CTTATCTTCATCAAATTTGG+TGG | 0.424285 | 8.4:-63801272 | MS.gene36883:CDS |
CAATTTCTTCCAAAGCGTTA+AGG | 0.429144 | 8.4:-63802560 | MS.gene36883:CDS |
GTTGAATTATGAGTTTATCA+TGG | 0.433360 | 8.4:-63803304 | MS.gene36883:CDS |
GAAGACCGGTGGGGTTTGTA+TGG | 0.451191 | 8.4:-63802583 | MS.gene36883:CDS |
ATGTGTATGTGATGGGGATG+GGG | 0.452601 | 8.4:-63803487 | MS.gene36883:CDS |
TTGAATTATGAGTTTATCAT+GGG | 0.453294 | 8.4:-63803303 | MS.gene36883:CDS |
AGACCGAGCACATCCATGGC+TGG | 0.472037 | 8.4:-63801140 | MS.gene36883:CDS |
CATACTCATTTGGACAATCC+AGG | 0.476869 | 8.4:-63801060 | MS.gene36883:CDS |
ACTTCAGACTTCACCTTGGC+AGG | 0.477175 | 8.4:-63801194 | MS.gene36883:CDS |
GTTCCATTGTCAAATAAGCT+AGG | 0.477935 | 8.4:+63803204 | None:intergenic |
ACCAATGCCACACAACTCTC+TGG | 0.478399 | 8.4:+63803429 | None:intergenic |
CGTGCTAACTTACATATATC+CGG | 0.478611 | 8.4:+63803387 | None:intergenic |
TCATGTGTATGTGATGGGGA+TGG | 0.483513 | 8.4:-63803489 | MS.gene36883:CDS |
ATTTGGTGGCTTGAAGTTGA+AGG | 0.484413 | 8.4:-63801258 | MS.gene36883:CDS |
TATCATGGGGAAAGCTTTGG+AGG | 0.486059 | 8.4:-63803289 | MS.gene36883:CDS |
GATGAAGATAAGCAACTGAA+TGG | 0.490735 | 8.4:+63801283 | None:intergenic |
TACACACTGTATGTCCCTAC+TGG | 0.496964 | 8.4:+63801216 | None:intergenic |
TTTCCTCATGTGTATGTGAT+GGG | 0.501023 | 8.4:-63803494 | MS.gene36883:CDS |
TTCTATGAGGCCAAGGCTTG+GGG | 0.518543 | 8.4:-63803457 | MS.gene36883:CDS |
AGTTCTATGAGGCCAAGGCT+TGG | 0.525497 | 8.4:-63803459 | MS.gene36883:CDS |
TTGATTTCCAATTTCCAGTA+GGG | 0.525554 | 8.4:-63801230 | MS.gene36883:CDS |
ACCAGAGAGTTGTGTGGCAT+TGG | 0.531563 | 8.4:-63803430 | MS.gene36883:CDS |
TTTCAGCTGACGACTTCTGA+TGG | 0.534756 | 8.4:-63801099 | MS.gene36883:CDS |
GGCAGGTCATCCAAGAAGCT+CGG | 0.535630 | 8.4:-63801177 | MS.gene36883:CDS |
AATAGATTGCACTCATACCA+AGG | 0.535661 | 8.4:-63800956 | MS.gene36883:CDS |
GGCTAGATAAGAAGACCGGT+GGG | 0.546129 | 8.4:-63802593 | MS.gene36883:CDS |
TCTGGTATATCCCCAAGCCT+TGG | 0.547315 | 8.4:+63803447 | None:intergenic |
ATTGATTTCCAATTTCCAGT+AGG | 0.547843 | 8.4:-63801231 | MS.gene36883:CDS |
GTCGACACACAAACCACCCT+TGG | 0.552331 | 8.4:+63800939 | None:intergenic |
ATTTGGACAATCCAGGGCAC+TGG | 0.554734 | 8.4:-63801053 | MS.gene36883:CDS |
ATTGTAGTTCTATGAGGCCA+AGG | 0.555797 | 8.4:-63803464 | MS.gene36883:CDS |
GACCGAGCACATCCATGGCT+GGG | 0.560312 | 8.4:-63801139 | MS.gene36883:CDS |
CAAAGTTTCCTACATGGTAG+AGG | 0.564462 | 8.4:+63801028 | None:intergenic |
ACATTTCGACTGAAGAATCA+AGG | 0.566024 | 8.4:-63802503 | MS.gene36883:intron |
TGGTAGAGGATCCAGTGCCC+TGG | 0.568450 | 8.4:+63801042 | None:intergenic |
TTCCTCATGTGTATGTGATG+GGG | 0.572484 | 8.4:-63803493 | MS.gene36883:CDS |
CTGGTGCTGAATTAGGGAAG+AGG | 0.572659 | 8.4:-63803251 | MS.gene36883:CDS |
ATCCCAGCCATGGATGTGCT+CGG | 0.573548 | 8.4:+63801137 | None:intergenic |
TAGAGACAAAGTTTCCTACA+TGG | 0.576728 | 8.4:+63801022 | None:intergenic |
TGTAAGACCGAGCACATCCA+TGG | 0.577774 | 8.4:-63801144 | MS.gene36883:CDS |
AAGCCTAGCTTATTTGACAA+TGG | 0.589381 | 8.4:-63803207 | MS.gene36883:CDS |
ATGATAAACTCATAATTCAA+CGG | 0.590373 | 8.4:+63803306 | None:intergenic |
TGGATTGTCCAAATGAGTAT+GGG | 0.593977 | 8.4:+63801062 | None:intergenic |
ATCTGGCTAGATAAGAAGAC+CGG | 0.595975 | 8.4:-63802597 | MS.gene36883:CDS |
GTTGATGTATTTGGATCCAC+CGG | 0.598664 | 8.4:-63803406 | MS.gene36883:CDS |
TGGTGCTGAATTAGGGAAGA+GGG | 0.601797 | 8.4:-63803250 | MS.gene36883:CDS |
GCTTCTTGGATGACCTGCCA+AGG | 0.607702 | 8.4:+63801181 | None:intergenic |
GATTGCACTCATACCAAGGG+TGG | 0.619652 | 8.4:-63800952 | MS.gene36883:CDS |
CTTATTTGACAATGGAACCA+AGG | 0.622181 | 8.4:-63803199 | MS.gene36883:intron |
TGGCTAGATAAGAAGACCGG+TGG | 0.623197 | 8.4:-63802594 | MS.gene36883:CDS |
CACTGGATCCTCTACCATGT+AGG | 0.625677 | 8.4:-63801036 | MS.gene36883:CDS |
ATGGGGATTGTAGTTCTATG+AGG | 0.637876 | 8.4:-63803470 | MS.gene36883:CDS |
ATACTCATTTGGACAATCCA+GGG | 0.642583 | 8.4:-63801059 | MS.gene36883:CDS |
CCAAAGCGTTAAGGATTACG+GGG | 0.642663 | 8.4:-63802551 | MS.gene36883:CDS |
GCTACTATTGCATATAAGCA+CGG | 0.643154 | 8.4:+63800915 | None:intergenic |
ATCCCCATCACATACACATG+AGG | 0.663735 | 8.4:+63803491 | None:intergenic |
TGAATTATGAGTTTATCATG+GGG | 0.664410 | 8.4:-63803302 | MS.gene36883:CDS |
GCTAACTTACATATATCCGG+TGG | 0.665776 | 8.4:+63803390 | None:intergenic |
ATAGATTGCACTCATACCAA+GGG | 0.671071 | 8.4:-63800955 | MS.gene36883:CDS |
AATTGCCATACAAACCCCAC+CGG | 0.672776 | 8.4:+63802578 | None:intergenic |
GTGTACTTCAGACTTCACCT+TGG | 0.710985 | 8.4:-63801198 | MS.gene36883:CDS |
GCTCGGTCTTACAAACTCGT+CGG | 0.720767 | 8.4:+63801154 | None:intergenic |
GCTAGATAAGAAGACCGGTG+GGG | 0.725990 | 8.4:-63802592 | MS.gene36883:CDS |
GGATATACCAGAGAGTTGTG+TGG | 0.728873 | 8.4:-63803436 | MS.gene36883:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAGCAAAATTTATGA+TGG | - | chr8.4:63802138-63802157 | MS.gene36883:intron | 15.0% |
!!! | TTTCTATTTCTTTTGAAAAA+TGG | + | chr8.4:63801267-63801286 | None:intergenic | 15.0% |
!! | ATGATAAACTCATAATTCAA+CGG | + | chr8.4:63801098-63801117 | None:intergenic | 20.0% |
!! | CTTGAACACATAATATTAAT+GGG | + | chr8.4:63801650-63801669 | None:intergenic | 20.0% |
!! | TACATACTCTTTATAAAATG+TGG | + | chr8.4:63802506-63802525 | None:intergenic | 20.0% |
!! | TCTTGAACACATAATATTAA+TGG | + | chr8.4:63801651-63801670 | None:intergenic | 20.0% |
!! | TTGAATTATGAGTTTATCAT+GGG | - | chr8.4:63801098-63801117 | MS.gene36883:CDS | 20.0% |
!!! | ATGAAAGCATAGTAATTAAT+GGG | - | chr8.4:63801688-63801707 | MS.gene36883:intron | 20.0% |
!!! | TAACTTTAAAGCGAAAAATA+AGG | + | chr8.4:63803012-63803031 | None:intergenic | 20.0% |
! | AACCCTTATACAACAAAAAT+CGG | + | chr8.4:63801481-63801500 | None:intergenic | 25.0% |
! | AAGCGAAAAATAAGGATTAT+AGG | + | chr8.4:63803004-63803023 | None:intergenic | 25.0% |
! | AGAAAAAGCTACATGTTTAA+AGG | + | chr8.4:63802820-63802839 | None:intergenic | 25.0% |
! | ATTTGTCACAACATTTACTT+TGG | - | chr8.4:63801773-63801792 | MS.gene36883:intron | 25.0% |
! | GTTGAATTATGAGTTTATCA+TGG | - | chr8.4:63801097-63801116 | MS.gene36883:CDS | 25.0% |
! | TGAATTATGAGTTTATCATG+GGG | - | chr8.4:63801099-63801118 | MS.gene36883:CDS | 25.0% |
! | TTGCTTATCTTCATCAAATT+TGG | - | chr8.4:63803126-63803145 | MS.gene36883:intron | 25.0% |
!! | CATGAAAGCATAGTAATTAA+TGG | - | chr8.4:63801687-63801706 | MS.gene36883:intron | 25.0% |
!!! | AATGGGTTTTTATTTGAGTT+TGG | + | chr8.4:63801633-63801652 | None:intergenic | 25.0% |
!!! | ATGCTAATGCAATAGTTTTT+TGG | + | chr8.4:63802446-63802465 | None:intergenic | 25.0% |
!!! | ATTTGCTATCTTTTTAGTCA+TGG | - | chr8.4:63802644-63802663 | MS.gene36883:intron | 25.0% |
!!! | TTCTTTTGCTGATTTTGTTT+GGG | - | chr8.4:63801061-63801080 | MS.gene36883:CDS | 25.0% |
ACCCTTATACAACAAAAATC+GGG | + | chr8.4:63801480-63801499 | None:intergenic | 30.0% | |
AGGATCCAAACTGATTATTT+GGG | - | chr8.4:63801338-63801357 | MS.gene36883:intron | 30.0% | |
ATCAAGTATAAACACACATG+TGG | - | chr8.4:63802958-63802977 | MS.gene36883:intron | 30.0% | |
ATTAATGGGAAGAAAAGTAG+AGG | - | chr8.4:63801702-63801721 | MS.gene36883:intron | 30.0% | |
CTTATCTTCATCAAATTTGG+TGG | - | chr8.4:63803129-63803148 | MS.gene36883:intron | 30.0% | |
GCATACAAAAGATTCAAGAT+TGG | - | chr8.4:63802462-63802481 | MS.gene36883:intron | 30.0% | |
GGTATTGTCATAAAAGCAAA+AGG | + | chr8.4:63802277-63802296 | None:intergenic | 30.0% | |
TAAGTTAGCACGATTGAATA+GGG | - | chr8.4:63801025-63801044 | MS.gene36883:CDS | 30.0% | |
TTGAAGTGAAAACACATATC+TGG | - | chr8.4:63802769-63802788 | MS.gene36883:intron | 30.0% | |
TTGACAACTCTATGAATAGA+GGG | - | chr8.4:63802213-63802232 | MS.gene36883:intron | 30.0% | |
TTGACGCATAAGTATTTACA+AGG | + | chr8.4:63802622-63802641 | None:intergenic | 30.0% | |
TTGATTTCCAATTTCCAGTA+GGG | - | chr8.4:63803171-63803190 | MS.gene36883:intron | 30.0% | |
TTTGACAACTCTATGAATAG+AGG | - | chr8.4:63802212-63802231 | MS.gene36883:intron | 30.0% | |
! | ACCAAATCTTTTGTATGTCT+TGG | - | chr8.4:63802531-63802550 | MS.gene36883:CDS | 30.0% |
! | ATTGATTTCCAATTTCCAGT+AGG | - | chr8.4:63803170-63803189 | MS.gene36883:intron | 30.0% |
! | CACAACATTTACTTTGGTTT+AGG | - | chr8.4:63801779-63801798 | MS.gene36883:intron | 30.0% |
! | CCAAATCTTTTGTATGTCTT+GGG | - | chr8.4:63802532-63802551 | MS.gene36883:CDS | 30.0% |
! | TTACTTTGGTTTAGGAAATC+TGG | - | chr8.4:63801787-63801806 | MS.gene36883:intron | 30.0% |
!! | AACCCGATTTTTGTTGTATA+AGG | - | chr8.4:63801475-63801494 | MS.gene36883:intron | 30.0% |
!! | ACCCGATTTTTGTTGTATAA+GGG | - | chr8.4:63801476-63801495 | MS.gene36883:intron | 30.0% |
!! | CTCATTTTTCCCAATTTACT+TGG | - | chr8.4:63802684-63802703 | MS.gene36883:intron | 30.0% |
!!! | CTTCTTTTGCTGATTTTGTT+TGG | - | chr8.4:63801060-63801079 | MS.gene36883:CDS | 30.0% |
!!! | GCAATAGTTTTTTGGCTTTA+TGG | + | chr8.4:63802438-63802457 | None:intergenic | 30.0% |
!!! | GTATTTTTTCCCACTGTATT+GGG | - | chr8.4:63802079-63802098 | MS.gene36883:intron | 30.0% |
!!! | TGTATTTTTTCCCACTGTAT+TGG | - | chr8.4:63802078-63802097 | MS.gene36883:intron | 30.0% |
AAAAAATGAGCCCAATACAG+TGG | + | chr8.4:63802092-63802111 | None:intergenic | 35.0% | |
AAAAATGAGCCCAATACAGT+GGG | + | chr8.4:63802091-63802110 | None:intergenic | 35.0% | |
AACACATATCTGGTTACTGT+TGG | - | chr8.4:63802779-63802798 | MS.gene36883:intron | 35.0% | |
AAGCCTAGCTTATTTGACAA+TGG | - | chr8.4:63801194-63801213 | MS.gene36883:CDS | 35.0% | |
AATAGATTGCACTCATACCA+AGG | - | chr8.4:63803445-63803464 | MS.gene36883:CDS | 35.0% | |
ACAATACCCCTATGTTCATA+GGG | - | chr8.4:63802289-63802308 | MS.gene36883:intron | 35.0% | |
ACATTTCGACTGAAGAATCA+AGG | - | chr8.4:63801898-63801917 | MS.gene36883:intron | 35.0% | |
ATACTCATTTGGACAATCCA+GGG | - | chr8.4:63803342-63803361 | MS.gene36883:CDS | 35.0% | |
ATAGATTGCACTCATACCAA+GGG | - | chr8.4:63803446-63803465 | MS.gene36883:CDS | 35.0% | |
ATATCCAACTTTAGCTGCAA+TGG | - | chr8.4:63801577-63801596 | MS.gene36883:intron | 35.0% | |
ATCTAAACTTGGTCTAGACT+TGG | - | chr8.4:63802559-63802578 | MS.gene36883:CDS | 35.0% | |
CAAGTCCCAAATAATCAGTT+TGG | + | chr8.4:63801346-63801365 | None:intergenic | 35.0% | |
CCCAAGACATACAAAAGATT+TGG | + | chr8.4:63802535-63802554 | None:intergenic | 35.0% | |
CGTGCTAACTTACATATATC+CGG | + | chr8.4:63801017-63801036 | None:intergenic | 35.0% | |
CTTATTTGACAATGGAACCA+AGG | - | chr8.4:63801202-63801221 | MS.gene36883:CDS | 35.0% | |
GAGGATCCAAACTGATTATT+TGG | - | chr8.4:63801337-63801356 | MS.gene36883:intron | 35.0% | |
GATGAAGATAAGCAACTGAA+TGG | + | chr8.4:63803121-63803140 | None:intergenic | 35.0% | |
GCTACTATTGCATATAAGCA+CGG | + | chr8.4:63803489-63803508 | None:intergenic | 35.0% | |
GTAAGTTAGCACGATTGAAT+AGG | - | chr8.4:63801024-63801043 | MS.gene36883:CDS | 35.0% | |
GTTCCATTGTCAAATAAGCT+AGG | + | chr8.4:63801200-63801219 | None:intergenic | 35.0% | |
TAGAGACAAAGTTTCCTACA+TGG | + | chr8.4:63803382-63803401 | None:intergenic | 35.0% | |
TCTTGGGTCAAATCTAAACT+TGG | - | chr8.4:63802548-63802567 | MS.gene36883:CDS | 35.0% | |
TGACAACTCTATGAATAGAG+GGG | - | chr8.4:63802214-63802233 | MS.gene36883:intron | 35.0% | |
TGGATTGTCCAAATGAGTAT+GGG | + | chr8.4:63803342-63803361 | None:intergenic | 35.0% | |
TTGACAACCCTATGAACATA+GGG | + | chr8.4:63802299-63802318 | None:intergenic | 35.0% | |
TTTCCTCATGTGTATGTGAT+GGG | - | chr8.4:63800907-63800926 | MS.gene36883:CDS | 35.0% | |
TTTGACAACCCTATGAACAT+AGG | + | chr8.4:63802300-63802319 | None:intergenic | 35.0% | |
! | ACACACATGTGGACAATTTT+AGG | - | chr8.4:63802969-63802988 | MS.gene36883:intron | 35.0% |
! | ACTATGAAAGCGCATGAATA+TGG | - | chr8.4:63803049-63803068 | MS.gene36883:intron | 35.0% |
! | CAAACTGATTATTTGGGACT+TGG | - | chr8.4:63801344-63801363 | MS.gene36883:intron | 35.0% |
! | CAATTTCTTCCAAAGCGTTA+AGG | - | chr8.4:63801841-63801860 | MS.gene36883:intron | 35.0% |
! | TTCCAAAGCGTTAAGGATTA+CGG | - | chr8.4:63801848-63801867 | MS.gene36883:intron | 35.0% |
! | TTTTCCTCATGTGTATGTGA+TGG | - | chr8.4:63800906-63800925 | MS.gene36883:CDS | 35.0% |
! | TTTTCTCTCACTCGATCTAA+CGG | - | chr8.4:63801411-63801430 | MS.gene36883:intron | 35.0% |
!!! | ACTGTATTGGGCTCATTTTT+TGG | - | chr8.4:63802091-63802110 | MS.gene36883:intron | 35.0% |
AAAGCCATTGCAGCTAAAGT+TGG | + | chr8.4:63801584-63801603 | None:intergenic | 40.0% | |
AATCAAGGTGAGATTACTGC+GGG | - | chr8.4:63801913-63801932 | MS.gene36883:intron | 40.0% | |
ATCTGGCTAGATAAGAAGAC+CGG | - | chr8.4:63801804-63801823 | MS.gene36883:intron | 40.0% | |
CAAAGTTTCCTACATGGTAG+AGG | + | chr8.4:63803376-63803395 | None:intergenic | 40.0% | |
CATACTCATTTGGACAATCC+AGG | - | chr8.4:63803341-63803360 | MS.gene36883:CDS | 40.0% | |
CATGTCGTGACTTATTAGAG+TGG | + | chr8.4:63801732-63801751 | None:intergenic | 40.0% | |
CTACACAGTGCAACAATTGT+GGG | + | chr8.4:63801439-63801458 | None:intergenic | 40.0% | |
CTGGATTGTCCAAATGAGTA+TGG | + | chr8.4:63803343-63803362 | None:intergenic | 40.0% | |
GAACACGCACCAAGTAAATT+GGG | + | chr8.4:63802696-63802715 | None:intergenic | 40.0% | |
GAATCAAGGTGAGATTACTG+CGG | - | chr8.4:63801912-63801931 | MS.gene36883:intron | 40.0% | |
GACAATACCCCTATGTTCAT+AGG | - | chr8.4:63802288-63802307 | MS.gene36883:intron | 40.0% | |
GAGGATGATACTACTAGTTC+TGG | - | chr8.4:63801131-63801150 | MS.gene36883:CDS | 40.0% | |
GCTAACTTACATATATCCGG+TGG | + | chr8.4:63801014-63801033 | None:intergenic | 40.0% | |
GGATAGATGATCGCAGATAT+TGG | - | chr8.4:63801871-63801890 | MS.gene36883:intron | 40.0% | |
GTTGATGTATTTGGATCCAC+CGG | - | chr8.4:63800995-63801014 | MS.gene36883:CDS | 40.0% | |
GTTTATCATGGGGAAAGCTT+TGG | - | chr8.4:63801109-63801128 | MS.gene36883:CDS | 40.0% | |
TCAGTTTGGATCCTCTATAG+TGG | + | chr8.4:63801332-63801351 | None:intergenic | 40.0% | |
TGACAACCCTATGAACATAG+GGG | + | chr8.4:63802298-63802317 | None:intergenic | 40.0% | |
TGCATTGTGCAACAGCTATA+GGG | + | chr8.4:63801308-63801327 | None:intergenic | 40.0% | |
TGCTGTATCCCATACTCATT+TGG | - | chr8.4:63803331-63803350 | MS.gene36883:CDS | 40.0% | |
TGTATGTCCCTACTGGAAAT+TGG | + | chr8.4:63803181-63803200 | None:intergenic | 40.0% | |
TTCCTCATGTGTATGTGATG+GGG | - | chr8.4:63800908-63800927 | MS.gene36883:CDS | 40.0% | |
TTGCATTGTGCAACAGCTAT+AGG | + | chr8.4:63801309-63801328 | None:intergenic | 40.0% | |
TTTGACAATGGAACCAAGGT+AGG | - | chr8.4:63801206-63801225 | MS.gene36883:CDS | 40.0% | |
! | AACTTGGTCTAGACTTGGTT+TGG | - | chr8.4:63802564-63802583 | MS.gene36883:CDS | 40.0% |
! | ATGAAAGCGCATGAATATGG+TGG | - | chr8.4:63803052-63803071 | MS.gene36883:intron | 40.0% |
! | ATGGGGATTGTAGTTCTATG+AGG | - | chr8.4:63800931-63800950 | MS.gene36883:CDS | 40.0% |
! | ATTGTAGTTCTATGAGGCCA+AGG | - | chr8.4:63800937-63800956 | MS.gene36883:CDS | 40.0% |
! | ATTTGGTGGCTTGAAGTTGA+AGG | - | chr8.4:63803143-63803162 | MS.gene36883:intron | 40.0% |
! | TCCAAAGCGTTAAGGATTAC+GGG | - | chr8.4:63801849-63801868 | MS.gene36883:intron | 40.0% |
!! | ACTAGTTCTGGTGCTGAATT+AGG | - | chr8.4:63801143-63801162 | MS.gene36883:CDS | 40.0% |
!! | CAATTTACTTGGTGCGTGTT+CGG | - | chr8.4:63802695-63802714 | MS.gene36883:intron | 40.0% |
!! | CTAGTTCTGGTGCTGAATTA+GGG | - | chr8.4:63801144-63801163 | MS.gene36883:CDS | 40.0% |
!! | CTCTGCTTTTGTGTGTGAAT+AGG | - | chr8.4:63803093-63803112 | MS.gene36883:intron | 40.0% |
!! | GGCATTGGTGTTGATGTATT+TGG | - | chr8.4:63800986-63801005 | MS.gene36883:CDS | 40.0% |
!! | TCTTTTTAGTCATGGTCTCG+TGG | - | chr8.4:63802652-63802671 | MS.gene36883:intron | 40.0% |
AATTGCCATACAAACCCCAC+CGG | + | chr8.4:63801826-63801845 | None:intergenic | 45.0% | |
ATCCCCATCACATACACATG+AGG | + | chr8.4:63800913-63800932 | None:intergenic | 45.0% | |
CACATTTGACCAAAGCCAGA+GGG | - | chr8.4:63802381-63802400 | MS.gene36883:intron | 45.0% | |
CGAACACGCACCAAGTAAAT+TGG | + | chr8.4:63802697-63802716 | None:intergenic | 45.0% | |
CGAACCAAGATAACCTACCT+TGG | + | chr8.4:63801222-63801241 | None:intergenic | 45.0% | |
CGACTTTGTATTAGACCCTC+TGG | + | chr8.4:63802399-63802418 | None:intergenic | 45.0% | |
GCACAATGCAACCACTATAG+AGG | - | chr8.4:63801318-63801337 | MS.gene36883:intron | 45.0% | |
GCATTGTGCAACAGCTATAG+GGG | + | chr8.4:63801307-63801326 | None:intergenic | 45.0% | |
GCTACACAGTGCAACAATTG+TGG | + | chr8.4:63801440-63801459 | None:intergenic | 45.0% | |
GGAACCAAGGTAGGTTATCT+TGG | - | chr8.4:63801215-63801234 | MS.gene36883:CDS | 45.0% | |
GGATATACCAGAGAGTTGTG+TGG | - | chr8.4:63800965-63800984 | MS.gene36883:CDS | 45.0% | |
GTGTACTTCAGACTTCACCT+TGG | - | chr8.4:63803203-63803222 | MS.gene36883:CDS | 45.0% | |
TACACACTGTATGTCCCTAC+TGG | + | chr8.4:63803188-63803207 | None:intergenic | 45.0% | |
TCATGCGCTTTCATAGTGCA+TGG | + | chr8.4:63803046-63803065 | None:intergenic | 45.0% | |
TGGATCACCTGCAGCTTATT+GGG | - | chr8.4:63801364-63801383 | MS.gene36883:intron | 45.0% | |
TTGGATCACCTGCAGCTTAT+TGG | - | chr8.4:63801363-63801382 | MS.gene36883:intron | 45.0% | |
TTTCAGCTGACGACTTCTGA+TGG | - | chr8.4:63803302-63803321 | MS.gene36883:CDS | 45.0% | |
! | ATGTGTATGTGATGGGGATG+GGG | - | chr8.4:63800914-63800933 | MS.gene36883:CDS | 45.0% |
! | CATGTGTATGTGATGGGGAT+GGG | - | chr8.4:63800913-63800932 | MS.gene36883:CDS | 45.0% |
! | CCAAAGCGTTAAGGATTACG+GGG | - | chr8.4:63801850-63801869 | MS.gene36883:intron | 45.0% |
! | TATCATGGGGAAAGCTTTGG+AGG | - | chr8.4:63801112-63801131 | MS.gene36883:CDS | 45.0% |
! | TCATGTGTATGTGATGGGGA+TGG | - | chr8.4:63800912-63800931 | MS.gene36883:CDS | 45.0% |
! | TGGTGCTGAATTAGGGAAGA+GGG | - | chr8.4:63801151-63801170 | MS.gene36883:CDS | 45.0% |
! | TGTATTAGACCCTCTGGCTT+TGG | + | chr8.4:63802393-63802412 | None:intergenic | 45.0% |
! | TTGGTGCGTGTTCGGTTTTA+CGG | - | chr8.4:63802703-63802722 | MS.gene36883:intron | 45.0% |
!! | CAGGTTTTATATCCCAGCCA+TGG | + | chr8.4:63803277-63803296 | None:intergenic | 45.0% |
!!! | GGGTTTTGAATCCTCTACAG+CGG | - | chr8.4:63801496-63801515 | MS.gene36883:intron | 45.0% |
AACCATCCCCAATAAGCTGC+AGG | + | chr8.4:63801374-63801393 | None:intergenic | 50.0% | |
ACCAATGCCACACAACTCTC+TGG | + | chr8.4:63800975-63800994 | None:intergenic | 50.0% | |
ACCAGAGAGTTGTGTGGCAT+TGG | - | chr8.4:63800971-63800990 | MS.gene36883:CDS | 50.0% | |
ACTTCAGACTTCACCTTGGC+AGG | - | chr8.4:63803207-63803226 | MS.gene36883:CDS | 50.0% | |
AGTTCTATGAGGCCAAGGCT+TGG | - | chr8.4:63800942-63800961 | MS.gene36883:CDS | 50.0% | |
ATTTGGACAATCCAGGGCAC+TGG | - | chr8.4:63803348-63803367 | MS.gene36883:CDS | 50.0% | |
CACTGGATCCTCTACCATGT+AGG | - | chr8.4:63803365-63803384 | MS.gene36883:CDS | 50.0% | |
CCACATTTGACCAAAGCCAG+AGG | - | chr8.4:63802380-63802399 | MS.gene36883:intron | 50.0% | |
CCCCGTAATCCTTAACGCTT+TGG | + | chr8.4:63801853-63801872 | None:intergenic | 50.0% | |
GATTGCACTCATACCAAGGG+TGG | - | chr8.4:63803449-63803468 | MS.gene36883:CDS | 50.0% | |
GCTAGATAAGAAGACCGGTG+GGG | - | chr8.4:63801809-63801828 | MS.gene36883:intron | 50.0% | |
GCTCGGTCTTACAAACTCGT+CGG | + | chr8.4:63803250-63803269 | None:intergenic | 50.0% | |
GGATCACCTGCAGCTTATTG+GGG | - | chr8.4:63801365-63801384 | MS.gene36883:intron | 50.0% | |
GGCTAGATAAGAAGACCGGT+GGG | - | chr8.4:63801808-63801827 | MS.gene36883:intron | 50.0% | |
GTCGTCAGCTGAAACTTTGC+AGG | + | chr8.4:63803296-63803315 | None:intergenic | 50.0% | |
GTTCTATGAGGCCAAGGCTT+GGG | - | chr8.4:63800943-63800962 | MS.gene36883:CDS | 50.0% | |
TCTGGTATATCCCCAAGCCT+TGG | + | chr8.4:63800957-63800976 | None:intergenic | 50.0% | |
TGGCTAGATAAGAAGACCGG+TGG | - | chr8.4:63801807-63801826 | MS.gene36883:intron | 50.0% | |
TGTAAGACCGAGCACATCCA+TGG | - | chr8.4:63803257-63803276 | MS.gene36883:CDS | 50.0% | |
TTCTATGAGGCCAAGGCTTG+GGG | - | chr8.4:63800944-63800963 | MS.gene36883:CDS | 50.0% | |
! | CTGGTGCTGAATTAGGGAAG+AGG | - | chr8.4:63801150-63801169 | MS.gene36883:CDS | 50.0% |
! | GCGCATGAATATGGTGGAAC+TGG | - | chr8.4:63803058-63803077 | MS.gene36883:intron | 50.0% |
! | TAGCTGCAATGGCTTTGCAG+AGG | - | chr8.4:63801588-63801607 | MS.gene36883:intron | 50.0% |
!! | CCTCTGGCTTTGGTCAAATG+TGG | + | chr8.4:63802383-63802402 | None:intergenic | 50.0% |
ATCCCAGCCATGGATGTGCT+CGG | + | chr8.4:63803267-63803286 | None:intergenic | 55.0% | |
ATTGCCTGTAGCCGCTGTAG+AGG | + | chr8.4:63801510-63801529 | None:intergenic | 55.0% | |
CACCTGCAGCTTATTGGGGA+TGG | - | chr8.4:63801369-63801388 | MS.gene36883:intron | 55.0% | |
GAAGACCGGTGGGGTTTGTA+TGG | - | chr8.4:63801818-63801837 | MS.gene36883:intron | 55.0% | |
GAATCCTCTACAGCGGCTAC+AGG | - | chr8.4:63801503-63801522 | MS.gene36883:intron | 55.0% | |
GCTTCTTGGATGACCTGCCA+AGG | + | chr8.4:63803223-63803242 | None:intergenic | 55.0% | |
GGCAGGTCATCCAAGAAGCT+CGG | - | chr8.4:63803224-63803243 | MS.gene36883:CDS | 55.0% | |
GTCGACACACAAACCACCCT+TGG | + | chr8.4:63803465-63803484 | None:intergenic | 55.0% | |
AACTCGTCGGCCGAGCTTCT+TGG | + | chr8.4:63803237-63803256 | None:intergenic | 60.0% | |
AGACCGAGCACATCCATGGC+TGG | - | chr8.4:63803261-63803280 | MS.gene36883:CDS | 60.0% | |
GACCGAGCACATCCATGGCT+GGG | - | chr8.4:63803262-63803281 | MS.gene36883:CDS | 60.0% | |
TGGTAGAGGATCCAGTGCCC+TGG | + | chr8.4:63803362-63803381 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 63800894 | 63803529 | 63800894 | ID=MS.gene36883 |
chr8.4 | mRNA | 63800894 | 63803529 | 63800894 | ID=MS.gene36883.t1;Parent=MS.gene36883 |
chr8.4 | exon | 63803200 | 63803529 | 63803200 | ID=MS.gene36883.t1.exon1;Parent=MS.gene36883.t1 |
chr8.4 | CDS | 63803200 | 63803529 | 63803200 | ID=cds.MS.gene36883.t1;Parent=MS.gene36883.t1 |
chr8.4 | exon | 63802504 | 63802622 | 63802504 | ID=MS.gene36883.t1.exon2;Parent=MS.gene36883.t1 |
chr8.4 | CDS | 63802504 | 63802622 | 63802504 | ID=cds.MS.gene36883.t1;Parent=MS.gene36883.t1 |
chr8.4 | exon | 63800894 | 63801308 | 63800894 | ID=MS.gene36883.t1.exon3;Parent=MS.gene36883.t1 |
chr8.4 | CDS | 63800894 | 63801308 | 63800894 | ID=cds.MS.gene36883.t1;Parent=MS.gene36883.t1 |
Gene Sequence |
Protein sequence |