AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene36883


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36883.t1 MTR_0002s0020 95.848 289 9 2 1 287 1 288 0.0 573
MS.gene36883.t1 MTR_4g102770 61.628 258 97 1 23 280 19 274 5.03e-123 353
MS.gene36883.t1 MTR_1g101390 61.961 255 94 1 23 277 28 279 1.01e-120 347
MS.gene36883.t1 MTR_0113s0040 56.475 278 117 2 1 278 1 274 2.25e-119 343
MS.gene36883.t1 MTR_5g010800 55.245 286 116 4 1 285 1 275 1.87e-115 333
MS.gene36883.t1 MTR_7g103380 54.639 291 114 3 1 280 1 284 1.71e-109 319
MS.gene36883.t1 MTR_7g112560 26.217 267 162 5 26 275 4 252 8.26e-33 121
MS.gene36883.t1 MTR_4g023570 26.984 252 159 5 26 275 4 232 5.30e-29 110
MS.gene36883.t1 MTR_7g112550 25.448 279 173 6 26 277 10 280 7.12e-23 95.9
MS.gene36883.t1 MTR_1g079140 36.806 144 89 2 25 167 15 157 1.34e-22 95.5
MS.gene36883.t1 MTR_1g079260 29.384 211 127 4 25 232 6 197 4.05e-22 93.6
MS.gene36883.t1 MTR_1g083580 30.303 198 118 5 26 219 11 192 6.79e-22 92.8
MS.gene36883.t1 MTR_1g079180 31.515 165 108 3 25 186 6 168 2.46e-21 91.3
MS.gene36883.t1 MTR_1g079380 30.806 211 124 4 23 230 4 195 6.79e-21 90.5
MS.gene36883.t1 MTR_1g079460 32.298 161 104 3 25 182 6 164 1.69e-20 89.0
MS.gene36883.t1 MTR_1g079200 25.670 261 177 7 25 275 6 259 7.85e-20 87.0
MS.gene36883.t1 MTR_1g079230 33.553 152 91 3 22 170 3 147 9.69e-20 87.0
MS.gene36883.t1 MTR_1g100597 25.362 276 171 9 25 277 6 269 1.64e-19 86.3
MS.gene36883.t1 MTR_1g079370 25.556 270 177 8 22 277 3 262 2.28e-19 85.9
MS.gene36883.t1 MTR_1g100613 34.848 132 80 2 40 170 6 132 1.29e-18 83.2
MS.gene36883.t1 MTR_1g079850 31.056 161 107 3 25 182 6 165 2.91e-18 83.2
MS.gene36883.t1 MTR_3g452600 24.910 277 164 8 23 277 10 264 6.95e-17 79.0
MS.gene36883.t1 MTR_1g079410 30.137 146 100 2 26 170 11 155 2.02e-15 75.1
MS.gene36883.t1 MTR_1g079400 29.452 146 101 2 26 170 15 159 5.36e-14 70.9
MS.gene36883.t1 MTR_1g079250 32.000 150 93 3 25 170 6 150 1.19e-13 70.1
MS.gene36883.t1 MTR_3g450990 29.054 148 91 5 23 167 10 146 7.05e-13 67.8
MS.gene36883.t1 MTR_3g006850 26.816 179 112 6 19 182 13 187 6.09e-12 65.5
MS.gene36883.t1 MTR_7g096300 26.131 199 124 4 25 220 6 184 1.01e-11 65.5
MS.gene36883.t1 MTR_1g079350 26.106 226 129 9 25 234 6 209 1.33e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene36883.t1 AT3G61060 61.429 280 102 3 1 277 1 277 5.71e-126 360
MS.gene36883.t1 AT3G61060 61.210 281 102 4 1 277 1 278 4.54e-124 356
MS.gene36883.t1 AT1G12710 57.706 279 111 3 4 281 11 283 1.40e-113 329
MS.gene36883.t1 AT5G52120 55.598 259 112 1 23 278 21 279 2.93e-111 323
MS.gene36883.t1 AT3G53000 53.041 296 122 4 1 285 1 290 3.11e-105 308
MS.gene36883.t1 AT1G12710 50.156 321 111 4 4 281 11 325 1.16e-104 308
MS.gene36883.t1 AT1G63090 55.914 279 114 3 4 281 11 281 4.62e-104 305
MS.gene36883.t1 AT1G09155 25.342 292 161 6 26 277 3 277 2.28e-23 97.1
MS.gene36883.t1 AT2G02360 32.278 158 96 3 27 181 18 167 2.88e-23 96.7
MS.gene36883.t1 AT1G80110 27.757 263 172 7 23 277 1 253 5.97e-23 95.5
MS.gene36883.t1 AT2G02240 27.099 262 166 7 26 275 64 312 6.19e-23 96.7
MS.gene36883.t1 AT2G02230 34.104 173 101 5 22 189 31 195 4.21e-22 94.4
MS.gene36883.t1 AT2G02340 31.288 163 103 3 23 182 36 192 1.78e-21 92.4
MS.gene36883.t1 AT5G24560 26.667 165 106 3 25 182 5 161 9.71e-21 87.8
MS.gene36883.t1 AT2G02250 29.310 174 111 4 25 194 49 214 2.15e-19 86.7
MS.gene36883.t1 AT1G56250 28.641 206 128 3 26 229 4 192 1.10e-18 84.3
MS.gene36883.t1 AT2G02320 24.825 286 155 11 23 277 40 296 5.88e-18 82.4
MS.gene36883.t1 AT2G02310 33.125 160 96 5 25 181 47 198 1.07e-17 82.0
MS.gene36883.t1 AT2G02350 31.507 146 86 4 23 164 24 159 2.36e-17 80.9
MS.gene36883.t1 AT1G56240 24.068 295 161 8 26 277 4 278 1.23e-16 78.6
MS.gene36883.t1 AT2G02300 24.812 266 160 8 25 275 36 276 1.07e-13 70.1

Find 84 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGTTCTGGTGCTGAATT+AGG 0.146532 8.4:-63803258 MS.gene36883:CDS
TTGCTTATCTTCATCAAATT+TGG 0.161534 8.4:-63801275 MS.gene36883:CDS
TGTATGTCCCTACTGGAAAT+TGG 0.254973 8.4:+63801223 None:intergenic
GGCATTGGTGTTGATGTATT+TGG 0.267377 8.4:-63803415 MS.gene36883:CDS
TTACTTTGGTTTAGGAAATC+TGG 0.291239 8.4:-63802614 MS.gene36883:intron
AACTCGTCGGCCGAGCTTCT+TGG 0.292282 8.4:+63801167 None:intergenic
TTCCAAAGCGTTAAGGATTA+CGG 0.314495 8.4:-63802553 MS.gene36883:CDS
CTGGATTGTCCAAATGAGTA+TGG 0.340026 8.4:+63801061 None:intergenic
GTCGTCAGCTGAAACTTTGC+AGG 0.342371 8.4:+63801108 None:intergenic
GTTCTATGAGGCCAAGGCTT+GGG 0.361339 8.4:-63803458 MS.gene36883:CDS
TGCTGTATCCCATACTCATT+TGG 0.366142 8.4:-63801070 MS.gene36883:CDS
CCCCGTAATCCTTAACGCTT+TGG 0.366232 8.4:+63802551 None:intergenic
GGATAGATGATCGCAGATAT+TGG 0.367089 8.4:-63802530 MS.gene36883:CDS
TCCAAAGCGTTAAGGATTAC+GGG 0.374198 8.4:-63802552 MS.gene36883:CDS
GAGGATGATACTACTAGTTC+TGG 0.381998 8.4:-63803270 MS.gene36883:CDS
GTAAGTTAGCACGATTGAAT+AGG 0.388338 8.4:-63803377 MS.gene36883:CDS
GTTTATCATGGGGAAAGCTT+TGG 0.404604 8.4:-63803292 MS.gene36883:CDS
TAAGTTAGCACGATTGAATA+GGG 0.418486 8.4:-63803376 MS.gene36883:CDS
CATGTGTATGTGATGGGGAT+GGG 0.419594 8.4:-63803488 MS.gene36883:CDS
CTAGTTCTGGTGCTGAATTA+GGG 0.423762 8.4:-63803257 MS.gene36883:CDS
CTTATCTTCATCAAATTTGG+TGG 0.424285 8.4:-63801272 MS.gene36883:CDS
CAATTTCTTCCAAAGCGTTA+AGG 0.429144 8.4:-63802560 MS.gene36883:CDS
GTTGAATTATGAGTTTATCA+TGG 0.433360 8.4:-63803304 MS.gene36883:CDS
GAAGACCGGTGGGGTTTGTA+TGG 0.451191 8.4:-63802583 MS.gene36883:CDS
ATGTGTATGTGATGGGGATG+GGG 0.452601 8.4:-63803487 MS.gene36883:CDS
TTGAATTATGAGTTTATCAT+GGG 0.453294 8.4:-63803303 MS.gene36883:CDS
AGACCGAGCACATCCATGGC+TGG 0.472037 8.4:-63801140 MS.gene36883:CDS
CATACTCATTTGGACAATCC+AGG 0.476869 8.4:-63801060 MS.gene36883:CDS
ACTTCAGACTTCACCTTGGC+AGG 0.477175 8.4:-63801194 MS.gene36883:CDS
GTTCCATTGTCAAATAAGCT+AGG 0.477935 8.4:+63803204 None:intergenic
ACCAATGCCACACAACTCTC+TGG 0.478399 8.4:+63803429 None:intergenic
CGTGCTAACTTACATATATC+CGG 0.478611 8.4:+63803387 None:intergenic
TCATGTGTATGTGATGGGGA+TGG 0.483513 8.4:-63803489 MS.gene36883:CDS
ATTTGGTGGCTTGAAGTTGA+AGG 0.484413 8.4:-63801258 MS.gene36883:CDS
TATCATGGGGAAAGCTTTGG+AGG 0.486059 8.4:-63803289 MS.gene36883:CDS
GATGAAGATAAGCAACTGAA+TGG 0.490735 8.4:+63801283 None:intergenic
TACACACTGTATGTCCCTAC+TGG 0.496964 8.4:+63801216 None:intergenic
TTTCCTCATGTGTATGTGAT+GGG 0.501023 8.4:-63803494 MS.gene36883:CDS
TTCTATGAGGCCAAGGCTTG+GGG 0.518543 8.4:-63803457 MS.gene36883:CDS
AGTTCTATGAGGCCAAGGCT+TGG 0.525497 8.4:-63803459 MS.gene36883:CDS
TTGATTTCCAATTTCCAGTA+GGG 0.525554 8.4:-63801230 MS.gene36883:CDS
ACCAGAGAGTTGTGTGGCAT+TGG 0.531563 8.4:-63803430 MS.gene36883:CDS
TTTCAGCTGACGACTTCTGA+TGG 0.534756 8.4:-63801099 MS.gene36883:CDS
GGCAGGTCATCCAAGAAGCT+CGG 0.535630 8.4:-63801177 MS.gene36883:CDS
AATAGATTGCACTCATACCA+AGG 0.535661 8.4:-63800956 MS.gene36883:CDS
GGCTAGATAAGAAGACCGGT+GGG 0.546129 8.4:-63802593 MS.gene36883:CDS
TCTGGTATATCCCCAAGCCT+TGG 0.547315 8.4:+63803447 None:intergenic
ATTGATTTCCAATTTCCAGT+AGG 0.547843 8.4:-63801231 MS.gene36883:CDS
GTCGACACACAAACCACCCT+TGG 0.552331 8.4:+63800939 None:intergenic
ATTTGGACAATCCAGGGCAC+TGG 0.554734 8.4:-63801053 MS.gene36883:CDS
ATTGTAGTTCTATGAGGCCA+AGG 0.555797 8.4:-63803464 MS.gene36883:CDS
GACCGAGCACATCCATGGCT+GGG 0.560312 8.4:-63801139 MS.gene36883:CDS
CAAAGTTTCCTACATGGTAG+AGG 0.564462 8.4:+63801028 None:intergenic
ACATTTCGACTGAAGAATCA+AGG 0.566024 8.4:-63802503 MS.gene36883:intron
TGGTAGAGGATCCAGTGCCC+TGG 0.568450 8.4:+63801042 None:intergenic
TTCCTCATGTGTATGTGATG+GGG 0.572484 8.4:-63803493 MS.gene36883:CDS
CTGGTGCTGAATTAGGGAAG+AGG 0.572659 8.4:-63803251 MS.gene36883:CDS
ATCCCAGCCATGGATGTGCT+CGG 0.573548 8.4:+63801137 None:intergenic
TAGAGACAAAGTTTCCTACA+TGG 0.576728 8.4:+63801022 None:intergenic
TGTAAGACCGAGCACATCCA+TGG 0.577774 8.4:-63801144 MS.gene36883:CDS
AAGCCTAGCTTATTTGACAA+TGG 0.589381 8.4:-63803207 MS.gene36883:CDS
ATGATAAACTCATAATTCAA+CGG 0.590373 8.4:+63803306 None:intergenic
TGGATTGTCCAAATGAGTAT+GGG 0.593977 8.4:+63801062 None:intergenic
ATCTGGCTAGATAAGAAGAC+CGG 0.595975 8.4:-63802597 MS.gene36883:CDS
GTTGATGTATTTGGATCCAC+CGG 0.598664 8.4:-63803406 MS.gene36883:CDS
TGGTGCTGAATTAGGGAAGA+GGG 0.601797 8.4:-63803250 MS.gene36883:CDS
GCTTCTTGGATGACCTGCCA+AGG 0.607702 8.4:+63801181 None:intergenic
GATTGCACTCATACCAAGGG+TGG 0.619652 8.4:-63800952 MS.gene36883:CDS
CTTATTTGACAATGGAACCA+AGG 0.622181 8.4:-63803199 MS.gene36883:intron
TGGCTAGATAAGAAGACCGG+TGG 0.623197 8.4:-63802594 MS.gene36883:CDS
CACTGGATCCTCTACCATGT+AGG 0.625677 8.4:-63801036 MS.gene36883:CDS
ATGGGGATTGTAGTTCTATG+AGG 0.637876 8.4:-63803470 MS.gene36883:CDS
ATACTCATTTGGACAATCCA+GGG 0.642583 8.4:-63801059 MS.gene36883:CDS
CCAAAGCGTTAAGGATTACG+GGG 0.642663 8.4:-63802551 MS.gene36883:CDS
GCTACTATTGCATATAAGCA+CGG 0.643154 8.4:+63800915 None:intergenic
ATCCCCATCACATACACATG+AGG 0.663735 8.4:+63803491 None:intergenic
TGAATTATGAGTTTATCATG+GGG 0.664410 8.4:-63803302 MS.gene36883:CDS
GCTAACTTACATATATCCGG+TGG 0.665776 8.4:+63803390 None:intergenic
ATAGATTGCACTCATACCAA+GGG 0.671071 8.4:-63800955 MS.gene36883:CDS
AATTGCCATACAAACCCCAC+CGG 0.672776 8.4:+63802578 None:intergenic
GTGTACTTCAGACTTCACCT+TGG 0.710985 8.4:-63801198 MS.gene36883:CDS
GCTCGGTCTTACAAACTCGT+CGG 0.720767 8.4:+63801154 None:intergenic
GCTAGATAAGAAGACCGGTG+GGG 0.725990 8.4:-63802592 MS.gene36883:CDS
GGATATACCAGAGAGTTGTG+TGG 0.728873 8.4:-63803436 MS.gene36883:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGCAAAATTTATGA+TGG - chr8.4:63802138-63802157 MS.gene36883:intron 15.0%
!!! TTTCTATTTCTTTTGAAAAA+TGG + chr8.4:63801267-63801286 None:intergenic 15.0%
!! ATGATAAACTCATAATTCAA+CGG + chr8.4:63801098-63801117 None:intergenic 20.0%
!! CTTGAACACATAATATTAAT+GGG + chr8.4:63801650-63801669 None:intergenic 20.0%
!! TACATACTCTTTATAAAATG+TGG + chr8.4:63802506-63802525 None:intergenic 20.0%
!! TCTTGAACACATAATATTAA+TGG + chr8.4:63801651-63801670 None:intergenic 20.0%
!! TTGAATTATGAGTTTATCAT+GGG - chr8.4:63801098-63801117 MS.gene36883:CDS 20.0%
!!! ATGAAAGCATAGTAATTAAT+GGG - chr8.4:63801688-63801707 MS.gene36883:intron 20.0%
!!! TAACTTTAAAGCGAAAAATA+AGG + chr8.4:63803012-63803031 None:intergenic 20.0%
! AACCCTTATACAACAAAAAT+CGG + chr8.4:63801481-63801500 None:intergenic 25.0%
! AAGCGAAAAATAAGGATTAT+AGG + chr8.4:63803004-63803023 None:intergenic 25.0%
! AGAAAAAGCTACATGTTTAA+AGG + chr8.4:63802820-63802839 None:intergenic 25.0%
! ATTTGTCACAACATTTACTT+TGG - chr8.4:63801773-63801792 MS.gene36883:intron 25.0%
! GTTGAATTATGAGTTTATCA+TGG - chr8.4:63801097-63801116 MS.gene36883:CDS 25.0%
! TGAATTATGAGTTTATCATG+GGG - chr8.4:63801099-63801118 MS.gene36883:CDS 25.0%
! TTGCTTATCTTCATCAAATT+TGG - chr8.4:63803126-63803145 MS.gene36883:intron 25.0%
!! CATGAAAGCATAGTAATTAA+TGG - chr8.4:63801687-63801706 MS.gene36883:intron 25.0%
!!! AATGGGTTTTTATTTGAGTT+TGG + chr8.4:63801633-63801652 None:intergenic 25.0%
!!! ATGCTAATGCAATAGTTTTT+TGG + chr8.4:63802446-63802465 None:intergenic 25.0%
!!! ATTTGCTATCTTTTTAGTCA+TGG - chr8.4:63802644-63802663 MS.gene36883:intron 25.0%
!!! TTCTTTTGCTGATTTTGTTT+GGG - chr8.4:63801061-63801080 MS.gene36883:CDS 25.0%
ACCCTTATACAACAAAAATC+GGG + chr8.4:63801480-63801499 None:intergenic 30.0%
AGGATCCAAACTGATTATTT+GGG - chr8.4:63801338-63801357 MS.gene36883:intron 30.0%
ATCAAGTATAAACACACATG+TGG - chr8.4:63802958-63802977 MS.gene36883:intron 30.0%
ATTAATGGGAAGAAAAGTAG+AGG - chr8.4:63801702-63801721 MS.gene36883:intron 30.0%
CTTATCTTCATCAAATTTGG+TGG - chr8.4:63803129-63803148 MS.gene36883:intron 30.0%
GCATACAAAAGATTCAAGAT+TGG - chr8.4:63802462-63802481 MS.gene36883:intron 30.0%
GGTATTGTCATAAAAGCAAA+AGG + chr8.4:63802277-63802296 None:intergenic 30.0%
TAAGTTAGCACGATTGAATA+GGG - chr8.4:63801025-63801044 MS.gene36883:CDS 30.0%
TTGAAGTGAAAACACATATC+TGG - chr8.4:63802769-63802788 MS.gene36883:intron 30.0%
TTGACAACTCTATGAATAGA+GGG - chr8.4:63802213-63802232 MS.gene36883:intron 30.0%
TTGACGCATAAGTATTTACA+AGG + chr8.4:63802622-63802641 None:intergenic 30.0%
TTGATTTCCAATTTCCAGTA+GGG - chr8.4:63803171-63803190 MS.gene36883:intron 30.0%
TTTGACAACTCTATGAATAG+AGG - chr8.4:63802212-63802231 MS.gene36883:intron 30.0%
! ACCAAATCTTTTGTATGTCT+TGG - chr8.4:63802531-63802550 MS.gene36883:CDS 30.0%
! ATTGATTTCCAATTTCCAGT+AGG - chr8.4:63803170-63803189 MS.gene36883:intron 30.0%
! CACAACATTTACTTTGGTTT+AGG - chr8.4:63801779-63801798 MS.gene36883:intron 30.0%
! CCAAATCTTTTGTATGTCTT+GGG - chr8.4:63802532-63802551 MS.gene36883:CDS 30.0%
! TTACTTTGGTTTAGGAAATC+TGG - chr8.4:63801787-63801806 MS.gene36883:intron 30.0%
!! AACCCGATTTTTGTTGTATA+AGG - chr8.4:63801475-63801494 MS.gene36883:intron 30.0%
!! ACCCGATTTTTGTTGTATAA+GGG - chr8.4:63801476-63801495 MS.gene36883:intron 30.0%
!! CTCATTTTTCCCAATTTACT+TGG - chr8.4:63802684-63802703 MS.gene36883:intron 30.0%
!!! CTTCTTTTGCTGATTTTGTT+TGG - chr8.4:63801060-63801079 MS.gene36883:CDS 30.0%
!!! GCAATAGTTTTTTGGCTTTA+TGG + chr8.4:63802438-63802457 None:intergenic 30.0%
!!! GTATTTTTTCCCACTGTATT+GGG - chr8.4:63802079-63802098 MS.gene36883:intron 30.0%
!!! TGTATTTTTTCCCACTGTAT+TGG - chr8.4:63802078-63802097 MS.gene36883:intron 30.0%
AAAAAATGAGCCCAATACAG+TGG + chr8.4:63802092-63802111 None:intergenic 35.0%
AAAAATGAGCCCAATACAGT+GGG + chr8.4:63802091-63802110 None:intergenic 35.0%
AACACATATCTGGTTACTGT+TGG - chr8.4:63802779-63802798 MS.gene36883:intron 35.0%
AAGCCTAGCTTATTTGACAA+TGG - chr8.4:63801194-63801213 MS.gene36883:CDS 35.0%
AATAGATTGCACTCATACCA+AGG - chr8.4:63803445-63803464 MS.gene36883:CDS 35.0%
ACAATACCCCTATGTTCATA+GGG - chr8.4:63802289-63802308 MS.gene36883:intron 35.0%
ACATTTCGACTGAAGAATCA+AGG - chr8.4:63801898-63801917 MS.gene36883:intron 35.0%
ATACTCATTTGGACAATCCA+GGG - chr8.4:63803342-63803361 MS.gene36883:CDS 35.0%
ATAGATTGCACTCATACCAA+GGG - chr8.4:63803446-63803465 MS.gene36883:CDS 35.0%
ATATCCAACTTTAGCTGCAA+TGG - chr8.4:63801577-63801596 MS.gene36883:intron 35.0%
ATCTAAACTTGGTCTAGACT+TGG - chr8.4:63802559-63802578 MS.gene36883:CDS 35.0%
CAAGTCCCAAATAATCAGTT+TGG + chr8.4:63801346-63801365 None:intergenic 35.0%
CCCAAGACATACAAAAGATT+TGG + chr8.4:63802535-63802554 None:intergenic 35.0%
CGTGCTAACTTACATATATC+CGG + chr8.4:63801017-63801036 None:intergenic 35.0%
CTTATTTGACAATGGAACCA+AGG - chr8.4:63801202-63801221 MS.gene36883:CDS 35.0%
GAGGATCCAAACTGATTATT+TGG - chr8.4:63801337-63801356 MS.gene36883:intron 35.0%
GATGAAGATAAGCAACTGAA+TGG + chr8.4:63803121-63803140 None:intergenic 35.0%
GCTACTATTGCATATAAGCA+CGG + chr8.4:63803489-63803508 None:intergenic 35.0%
GTAAGTTAGCACGATTGAAT+AGG - chr8.4:63801024-63801043 MS.gene36883:CDS 35.0%
GTTCCATTGTCAAATAAGCT+AGG + chr8.4:63801200-63801219 None:intergenic 35.0%
TAGAGACAAAGTTTCCTACA+TGG + chr8.4:63803382-63803401 None:intergenic 35.0%
TCTTGGGTCAAATCTAAACT+TGG - chr8.4:63802548-63802567 MS.gene36883:CDS 35.0%
TGACAACTCTATGAATAGAG+GGG - chr8.4:63802214-63802233 MS.gene36883:intron 35.0%
TGGATTGTCCAAATGAGTAT+GGG + chr8.4:63803342-63803361 None:intergenic 35.0%
TTGACAACCCTATGAACATA+GGG + chr8.4:63802299-63802318 None:intergenic 35.0%
TTTCCTCATGTGTATGTGAT+GGG - chr8.4:63800907-63800926 MS.gene36883:CDS 35.0%
TTTGACAACCCTATGAACAT+AGG + chr8.4:63802300-63802319 None:intergenic 35.0%
! ACACACATGTGGACAATTTT+AGG - chr8.4:63802969-63802988 MS.gene36883:intron 35.0%
! ACTATGAAAGCGCATGAATA+TGG - chr8.4:63803049-63803068 MS.gene36883:intron 35.0%
! CAAACTGATTATTTGGGACT+TGG - chr8.4:63801344-63801363 MS.gene36883:intron 35.0%
! CAATTTCTTCCAAAGCGTTA+AGG - chr8.4:63801841-63801860 MS.gene36883:intron 35.0%
! TTCCAAAGCGTTAAGGATTA+CGG - chr8.4:63801848-63801867 MS.gene36883:intron 35.0%
! TTTTCCTCATGTGTATGTGA+TGG - chr8.4:63800906-63800925 MS.gene36883:CDS 35.0%
! TTTTCTCTCACTCGATCTAA+CGG - chr8.4:63801411-63801430 MS.gene36883:intron 35.0%
!!! ACTGTATTGGGCTCATTTTT+TGG - chr8.4:63802091-63802110 MS.gene36883:intron 35.0%
AAAGCCATTGCAGCTAAAGT+TGG + chr8.4:63801584-63801603 None:intergenic 40.0%
AATCAAGGTGAGATTACTGC+GGG - chr8.4:63801913-63801932 MS.gene36883:intron 40.0%
ATCTGGCTAGATAAGAAGAC+CGG - chr8.4:63801804-63801823 MS.gene36883:intron 40.0%
CAAAGTTTCCTACATGGTAG+AGG + chr8.4:63803376-63803395 None:intergenic 40.0%
CATACTCATTTGGACAATCC+AGG - chr8.4:63803341-63803360 MS.gene36883:CDS 40.0%
CATGTCGTGACTTATTAGAG+TGG + chr8.4:63801732-63801751 None:intergenic 40.0%
CTACACAGTGCAACAATTGT+GGG + chr8.4:63801439-63801458 None:intergenic 40.0%
CTGGATTGTCCAAATGAGTA+TGG + chr8.4:63803343-63803362 None:intergenic 40.0%
GAACACGCACCAAGTAAATT+GGG + chr8.4:63802696-63802715 None:intergenic 40.0%
GAATCAAGGTGAGATTACTG+CGG - chr8.4:63801912-63801931 MS.gene36883:intron 40.0%
GACAATACCCCTATGTTCAT+AGG - chr8.4:63802288-63802307 MS.gene36883:intron 40.0%
GAGGATGATACTACTAGTTC+TGG - chr8.4:63801131-63801150 MS.gene36883:CDS 40.0%
GCTAACTTACATATATCCGG+TGG + chr8.4:63801014-63801033 None:intergenic 40.0%
GGATAGATGATCGCAGATAT+TGG - chr8.4:63801871-63801890 MS.gene36883:intron 40.0%
GTTGATGTATTTGGATCCAC+CGG - chr8.4:63800995-63801014 MS.gene36883:CDS 40.0%
GTTTATCATGGGGAAAGCTT+TGG - chr8.4:63801109-63801128 MS.gene36883:CDS 40.0%
TCAGTTTGGATCCTCTATAG+TGG + chr8.4:63801332-63801351 None:intergenic 40.0%
TGACAACCCTATGAACATAG+GGG + chr8.4:63802298-63802317 None:intergenic 40.0%
TGCATTGTGCAACAGCTATA+GGG + chr8.4:63801308-63801327 None:intergenic 40.0%
TGCTGTATCCCATACTCATT+TGG - chr8.4:63803331-63803350 MS.gene36883:CDS 40.0%
TGTATGTCCCTACTGGAAAT+TGG + chr8.4:63803181-63803200 None:intergenic 40.0%
TTCCTCATGTGTATGTGATG+GGG - chr8.4:63800908-63800927 MS.gene36883:CDS 40.0%
TTGCATTGTGCAACAGCTAT+AGG + chr8.4:63801309-63801328 None:intergenic 40.0%
TTTGACAATGGAACCAAGGT+AGG - chr8.4:63801206-63801225 MS.gene36883:CDS 40.0%
! AACTTGGTCTAGACTTGGTT+TGG - chr8.4:63802564-63802583 MS.gene36883:CDS 40.0%
! ATGAAAGCGCATGAATATGG+TGG - chr8.4:63803052-63803071 MS.gene36883:intron 40.0%
! ATGGGGATTGTAGTTCTATG+AGG - chr8.4:63800931-63800950 MS.gene36883:CDS 40.0%
! ATTGTAGTTCTATGAGGCCA+AGG - chr8.4:63800937-63800956 MS.gene36883:CDS 40.0%
! ATTTGGTGGCTTGAAGTTGA+AGG - chr8.4:63803143-63803162 MS.gene36883:intron 40.0%
! TCCAAAGCGTTAAGGATTAC+GGG - chr8.4:63801849-63801868 MS.gene36883:intron 40.0%
!! ACTAGTTCTGGTGCTGAATT+AGG - chr8.4:63801143-63801162 MS.gene36883:CDS 40.0%
!! CAATTTACTTGGTGCGTGTT+CGG - chr8.4:63802695-63802714 MS.gene36883:intron 40.0%
!! CTAGTTCTGGTGCTGAATTA+GGG - chr8.4:63801144-63801163 MS.gene36883:CDS 40.0%
!! CTCTGCTTTTGTGTGTGAAT+AGG - chr8.4:63803093-63803112 MS.gene36883:intron 40.0%
!! GGCATTGGTGTTGATGTATT+TGG - chr8.4:63800986-63801005 MS.gene36883:CDS 40.0%
!! TCTTTTTAGTCATGGTCTCG+TGG - chr8.4:63802652-63802671 MS.gene36883:intron 40.0%
AATTGCCATACAAACCCCAC+CGG + chr8.4:63801826-63801845 None:intergenic 45.0%
ATCCCCATCACATACACATG+AGG + chr8.4:63800913-63800932 None:intergenic 45.0%
CACATTTGACCAAAGCCAGA+GGG - chr8.4:63802381-63802400 MS.gene36883:intron 45.0%
CGAACACGCACCAAGTAAAT+TGG + chr8.4:63802697-63802716 None:intergenic 45.0%
CGAACCAAGATAACCTACCT+TGG + chr8.4:63801222-63801241 None:intergenic 45.0%
CGACTTTGTATTAGACCCTC+TGG + chr8.4:63802399-63802418 None:intergenic 45.0%
GCACAATGCAACCACTATAG+AGG - chr8.4:63801318-63801337 MS.gene36883:intron 45.0%
GCATTGTGCAACAGCTATAG+GGG + chr8.4:63801307-63801326 None:intergenic 45.0%
GCTACACAGTGCAACAATTG+TGG + chr8.4:63801440-63801459 None:intergenic 45.0%
GGAACCAAGGTAGGTTATCT+TGG - chr8.4:63801215-63801234 MS.gene36883:CDS 45.0%
GGATATACCAGAGAGTTGTG+TGG - chr8.4:63800965-63800984 MS.gene36883:CDS 45.0%
GTGTACTTCAGACTTCACCT+TGG - chr8.4:63803203-63803222 MS.gene36883:CDS 45.0%
TACACACTGTATGTCCCTAC+TGG + chr8.4:63803188-63803207 None:intergenic 45.0%
TCATGCGCTTTCATAGTGCA+TGG + chr8.4:63803046-63803065 None:intergenic 45.0%
TGGATCACCTGCAGCTTATT+GGG - chr8.4:63801364-63801383 MS.gene36883:intron 45.0%
TTGGATCACCTGCAGCTTAT+TGG - chr8.4:63801363-63801382 MS.gene36883:intron 45.0%
TTTCAGCTGACGACTTCTGA+TGG - chr8.4:63803302-63803321 MS.gene36883:CDS 45.0%
! ATGTGTATGTGATGGGGATG+GGG - chr8.4:63800914-63800933 MS.gene36883:CDS 45.0%
! CATGTGTATGTGATGGGGAT+GGG - chr8.4:63800913-63800932 MS.gene36883:CDS 45.0%
! CCAAAGCGTTAAGGATTACG+GGG - chr8.4:63801850-63801869 MS.gene36883:intron 45.0%
! TATCATGGGGAAAGCTTTGG+AGG - chr8.4:63801112-63801131 MS.gene36883:CDS 45.0%
! TCATGTGTATGTGATGGGGA+TGG - chr8.4:63800912-63800931 MS.gene36883:CDS 45.0%
! TGGTGCTGAATTAGGGAAGA+GGG - chr8.4:63801151-63801170 MS.gene36883:CDS 45.0%
! TGTATTAGACCCTCTGGCTT+TGG + chr8.4:63802393-63802412 None:intergenic 45.0%
! TTGGTGCGTGTTCGGTTTTA+CGG - chr8.4:63802703-63802722 MS.gene36883:intron 45.0%
!! CAGGTTTTATATCCCAGCCA+TGG + chr8.4:63803277-63803296 None:intergenic 45.0%
!!! GGGTTTTGAATCCTCTACAG+CGG - chr8.4:63801496-63801515 MS.gene36883:intron 45.0%
AACCATCCCCAATAAGCTGC+AGG + chr8.4:63801374-63801393 None:intergenic 50.0%
ACCAATGCCACACAACTCTC+TGG + chr8.4:63800975-63800994 None:intergenic 50.0%
ACCAGAGAGTTGTGTGGCAT+TGG - chr8.4:63800971-63800990 MS.gene36883:CDS 50.0%
ACTTCAGACTTCACCTTGGC+AGG - chr8.4:63803207-63803226 MS.gene36883:CDS 50.0%
AGTTCTATGAGGCCAAGGCT+TGG - chr8.4:63800942-63800961 MS.gene36883:CDS 50.0%
ATTTGGACAATCCAGGGCAC+TGG - chr8.4:63803348-63803367 MS.gene36883:CDS 50.0%
CACTGGATCCTCTACCATGT+AGG - chr8.4:63803365-63803384 MS.gene36883:CDS 50.0%
CCACATTTGACCAAAGCCAG+AGG - chr8.4:63802380-63802399 MS.gene36883:intron 50.0%
CCCCGTAATCCTTAACGCTT+TGG + chr8.4:63801853-63801872 None:intergenic 50.0%
GATTGCACTCATACCAAGGG+TGG - chr8.4:63803449-63803468 MS.gene36883:CDS 50.0%
GCTAGATAAGAAGACCGGTG+GGG - chr8.4:63801809-63801828 MS.gene36883:intron 50.0%
GCTCGGTCTTACAAACTCGT+CGG + chr8.4:63803250-63803269 None:intergenic 50.0%
GGATCACCTGCAGCTTATTG+GGG - chr8.4:63801365-63801384 MS.gene36883:intron 50.0%
GGCTAGATAAGAAGACCGGT+GGG - chr8.4:63801808-63801827 MS.gene36883:intron 50.0%
GTCGTCAGCTGAAACTTTGC+AGG + chr8.4:63803296-63803315 None:intergenic 50.0%
GTTCTATGAGGCCAAGGCTT+GGG - chr8.4:63800943-63800962 MS.gene36883:CDS 50.0%
TCTGGTATATCCCCAAGCCT+TGG + chr8.4:63800957-63800976 None:intergenic 50.0%
TGGCTAGATAAGAAGACCGG+TGG - chr8.4:63801807-63801826 MS.gene36883:intron 50.0%
TGTAAGACCGAGCACATCCA+TGG - chr8.4:63803257-63803276 MS.gene36883:CDS 50.0%
TTCTATGAGGCCAAGGCTTG+GGG - chr8.4:63800944-63800963 MS.gene36883:CDS 50.0%
! CTGGTGCTGAATTAGGGAAG+AGG - chr8.4:63801150-63801169 MS.gene36883:CDS 50.0%
! GCGCATGAATATGGTGGAAC+TGG - chr8.4:63803058-63803077 MS.gene36883:intron 50.0%
! TAGCTGCAATGGCTTTGCAG+AGG - chr8.4:63801588-63801607 MS.gene36883:intron 50.0%
!! CCTCTGGCTTTGGTCAAATG+TGG + chr8.4:63802383-63802402 None:intergenic 50.0%
ATCCCAGCCATGGATGTGCT+CGG + chr8.4:63803267-63803286 None:intergenic 55.0%
ATTGCCTGTAGCCGCTGTAG+AGG + chr8.4:63801510-63801529 None:intergenic 55.0%
CACCTGCAGCTTATTGGGGA+TGG - chr8.4:63801369-63801388 MS.gene36883:intron 55.0%
GAAGACCGGTGGGGTTTGTA+TGG - chr8.4:63801818-63801837 MS.gene36883:intron 55.0%
GAATCCTCTACAGCGGCTAC+AGG - chr8.4:63801503-63801522 MS.gene36883:intron 55.0%
GCTTCTTGGATGACCTGCCA+AGG + chr8.4:63803223-63803242 None:intergenic 55.0%
GGCAGGTCATCCAAGAAGCT+CGG - chr8.4:63803224-63803243 MS.gene36883:CDS 55.0%
GTCGACACACAAACCACCCT+TGG + chr8.4:63803465-63803484 None:intergenic 55.0%
AACTCGTCGGCCGAGCTTCT+TGG + chr8.4:63803237-63803256 None:intergenic 60.0%
AGACCGAGCACATCCATGGC+TGG - chr8.4:63803261-63803280 MS.gene36883:CDS 60.0%
GACCGAGCACATCCATGGCT+GGG - chr8.4:63803262-63803281 MS.gene36883:CDS 60.0%
TGGTAGAGGATCCAGTGCCC+TGG + chr8.4:63803362-63803381 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 63800894 63803529 63800894 ID=MS.gene36883
chr8.4 mRNA 63800894 63803529 63800894 ID=MS.gene36883.t1;Parent=MS.gene36883
chr8.4 exon 63803200 63803529 63803200 ID=MS.gene36883.t1.exon1;Parent=MS.gene36883.t1
chr8.4 CDS 63803200 63803529 63803200 ID=cds.MS.gene36883.t1;Parent=MS.gene36883.t1
chr8.4 exon 63802504 63802622 63802504 ID=MS.gene36883.t1.exon2;Parent=MS.gene36883.t1
chr8.4 CDS 63802504 63802622 63802504 ID=cds.MS.gene36883.t1;Parent=MS.gene36883.t1
chr8.4 exon 63800894 63801308 63800894 ID=MS.gene36883.t1.exon3;Parent=MS.gene36883.t1
chr8.4 CDS 63800894 63801308 63800894 ID=cds.MS.gene36883.t1;Parent=MS.gene36883.t1
Gene Sequence

>MS.gene36883

ATGGGTGCTAATTTTTCCTCATGTGTATGTGATGGGGATGGGGATTGTAGTTCTATGAGGCCAAGGCTTGGGGATATACCAGAGAGTTGTGTGGCATTGGTGTTGATGTATTTGGATCCACCGGATATATGTAAGTTAGCACGATTGAATAGGGCGTTTCGTGATGCTTCTTTTGCTGATTTTGTTTGGGAATCGAAGTTGCCGTTGAATTATGAGTTTATCATGGGGAAAGCTTTGGAGGATGATACTACTAGTTCTGGTGCTGAATTAGGGAAGAGGGATATTTATGCTAGACTTTGTAAGCCTAGCTTATTTGACAATGGAACCAAGGTAGGTTATCTTGGTTCGATAACTCAAGTAGAGAATATCTCCATTTTTCAAAAGAAATAGAAAGTTTTATTACTATGAATCCCCTATAGCTGTTGCACAATGCAACCACTATAGAGGATCCAAACTGATTATTTGGGACTTGGATCACCTGCAGCTTATTGGGGATGGTTAGATCTTGAGAGAGAACTTTTCTCTCACTCGATCTAACGGTTCCCACAATTGTTGCACTGTGTAGCTGTTGTAATGATTCAAACCCGATTTTTGTTGTATAAGGGTTTTGAATCCTCTACAGCGGCTACAGGCAATGCATATGCTGCAGAATTGTTGTATCTGAGAAAGAGATTTTTAAATTTATATCCAACTTTAGCTGCAATGGCTTTGCAGAGGCTTCGTCAATGTGAAAGATCCAAACTCAAATAAAAACCCATTAATATTATGTGTTCAAGAAAACGTGTTTTATATACATGAAAGCATAGTAATTAATGGGAAGAAAAGTAGAGGATCTCCACTCTAATAAGTCACGACATGATTTTCAAGTGCTTGATGTTTATTTGTCACAACATTTACTTTGGTTTAGGAAATCTGGCTAGATAAGAAGACCGGTGGGGTTTGTATGGCAATTTCTTCCAAAGCGTTAAGGATTACGGGGATAGATGATCGCAGATATTGGAATCACATTTCGACTGAAGAATCAAGGTGAGATTACTGCGGGAAACTATGTTACTCGCTTACTTGTTCTAATATAGTAGAAGTAAAACTTGCTTTGTCTTGACTTTTGCTATACTTTGTTTTCATCTTTTTGCGCAAAAATACAAAACTTTTTAGTTGAGCTTTTCTAATTTGATGTGTGTTAATGTATTTTTTCCCACTGTATTGGGCTCATTTTTTGGCTCTATATTTTATTTTTATTTTATAAAAAAAGCAAAATTTATGATGGAATAATATAATATGAGAAATGATATATGAACATCTATTTTGCAACAACTATTTTGACAACTCTATGAATAGAGGGGTATTTTTGTAAAAACATCATGTTTTGAAGCTTTTTTTCCTTTTGCTTTTATGACAATACCCCTATGTTCATAGGGTTGTCAAAATAGTTGTTGTGAATTAGATGTTCATATATCATTTCTCATATAATATAGCACAAGATGTGCCACATTTGACCAAAGCCAGAGGGTCTAATACAAAGTCGAACACAAATCAATACTCCATAAAGCCAAAAAACTATTGCATTAGCATACAAAAGATTCAAGATTGGAATGTTCATGTTTAGAAACCACATTTTATAAAGAGTATGTAATCATACCAAATCTTTTGTATGTCTTGGGTCAAATCTAAACTTGGTCTAGACTTGGTTTGGTTAGTGAACTTTTTGAACTCAAATTCATCATTCCTTGTAAATACTTATGCGTCAAGAATTTGCTATCTTTTTAGTCATGGTCTCGTGGATACTCTTGCTCATTTTTCCCAATTTACTTGGTGCGTGTTCGGTTTTACGGTGCAGAGAGTATCATAATTGATTATATCTTGAATCAAATTTGATTGAAGTGAAAACACATATCTGGTTACTGTTGGTCAAAATCAATTTTACCTTTAAACATGTAGCTTTTTCTCTAGATTGAAAACTTTACACTGAGTTTTACATCAAATGCTTTTAGAGTAAAATATCAACAAAAATAAATCACTTCAATTTACACTCGTTTGTATTTTATAAAATCAATTGTATACAAAATCAAGTATAAACACACATGTGGACAATTTTAGGTTTCGATGACCTATAATCCTTATTTTTCGCTTTAAAGTTATATTATATTTACCATGCACTATGAAAGCGCATGAATATGGTGGAACTGGATATATTATGCTCTCTGCTTTTGTGTGTGAATAGGTTCCATTCAGTTGCTTATCTTCATCAAATTTGGTGGCTTGAAGTTGAAGGAGATATTGATTTCCAATTTCCAGTAGGGACATACAGTGTGTACTTCAGACTTCACCTTGGCAGGTCATCCAAGAAGCTCGGCCGACGAGTTTGTAAGACCGAGCACATCCATGGCTGGGATATAAAACCTGCAAAGTTTCAGCTGACGACTTCTGATGGTCAAATTGCTGTATCCCATACTCATTTGGACAATCCAGGGCACTGGATCCTCTACCATGTAGGAAACTTTGTCTCTAAGAATTCTAATGATTTGATGAAGATCAAGTTTTCATTGTCTCAAATAGATTGCACTCATACCAAGGGTGGTTTGTGTGTCGACTCCGTGCTTATATGCAATAGTAGCGATGTAAAAAAAGAAGTGTAA

Protein sequence

>MS.gene36883.t1

MGANFSSCVCDGDGDCSSMRPRLGDIPESCVALVLMYLDPPDICKLARLNRAFRDASFADFVWESKLPLNYEFIMGKALEDDTTSSGAELGKRDIYARLCKPSLFDNGTKEIWLDKKTGGVCMAISSKALRITGIDDRRYWNHISTEESRFHSVAYLHQIWWLEVEGDIDFQFPVGTYSVYFRLHLGRSSKKLGRRVCKTEHIHGWDIKPAKFQLTTSDGQIAVSHTHLDNPGHWILYHVGNFVSKNSNDLMKIKFSLSQIDCTHTKGGLCVDSVLICNSSDVKKEV