Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37743.t1 | XP_003620188.1 | 95.3 | 213 | 10 | 0 | 1 | 213 | 1 | 213 | 1.90E-117 | 431.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37743.t1 | P13087 | 44.6 | 213 | 101 | 5 | 5 | 209 | 11 | 214 | 8.9e-44 | 178.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37743.t1 | G7KKR0 | 95.3 | 213 | 10 | 0 | 1 | 213 | 1 | 213 | 1.3e-117 | 431.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049217 | MS.gene37743 | -0.802044 | 6.76E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene37743 | 0.830628 | 2.64E-55 | -1.69E-46 |
| MS.gene050800 | MS.gene37743 | 0.840448 | 8.64E-58 | -1.69E-46 |
| MS.gene050809 | MS.gene37743 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene051632 | MS.gene37743 | 0.83112 | 2.00E-55 | -1.69E-46 |
| MS.gene051694 | MS.gene37743 | -0.821014 | 5.06E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene37743 | -0.807354 | 5.27E-50 | -1.69E-46 |
| MS.gene05234 | MS.gene37743 | 0.883928 | 2.96E-71 | -1.69E-46 |
| MS.gene053421 | MS.gene37743 | 0.821344 | 4.24E-53 | -1.69E-46 |
| MS.gene054290 | MS.gene37743 | 0.826954 | 2.04E-54 | -1.69E-46 |
| MS.gene055202 | MS.gene37743 | 0.802478 | 5.50E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene37743 | -0.808933 | 2.43E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene37743 | -0.810207 | 1.29E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene37743 | -0.806632 | 7.49E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37743.t1 | MTR_6g078290 | 95.305 | 213 | 10 | 0 | 1 | 213 | 1 | 213 | 3.71e-152 | 421 |
| MS.gene37743.t1 | MTR_6g078120 | 58.291 | 199 | 81 | 2 | 15 | 212 | 16 | 213 | 2.30e-75 | 226 |
| MS.gene37743.t1 | MTR_6g078140 | 58.794 | 199 | 80 | 2 | 15 | 212 | 16 | 213 | 5.16e-75 | 225 |
| MS.gene37743.t1 | MTR_6g078280 | 53.266 | 199 | 83 | 6 | 17 | 210 | 17 | 210 | 2.63e-63 | 196 |
| MS.gene37743.t1 | MTR_6g078250 | 49.289 | 211 | 95 | 5 | 1 | 209 | 1 | 201 | 1.99e-59 | 186 |
| MS.gene37743.t1 | MTR_7g037410 | 47.644 | 191 | 87 | 4 | 22 | 210 | 21 | 200 | 2.22e-54 | 172 |
| MS.gene37743.t1 | MTR_6g078260 | 42.424 | 198 | 96 | 5 | 15 | 210 | 16 | 197 | 8.49e-48 | 155 |
| MS.gene37743.t1 | MTR_6g078100 | 43.836 | 219 | 98 | 10 | 1 | 210 | 1 | 203 | 1.88e-47 | 155 |
| MS.gene37743.t1 | MTR_6g078070 | 42.326 | 215 | 105 | 8 | 1 | 210 | 1 | 201 | 1.43e-45 | 150 |
| MS.gene37743.t1 | MTR_3g106585 | 32.727 | 220 | 113 | 10 | 3 | 213 | 5 | 198 | 2.31e-21 | 88.2 |
| MS.gene37743.t1 | MTR_6g065460 | 33.333 | 213 | 126 | 7 | 1 | 209 | 1 | 201 | 3.37e-21 | 87.4 |
| MS.gene37743.t1 | MTR_3g014870 | 33.178 | 214 | 111 | 9 | 6 | 210 | 11 | 201 | 8.95e-21 | 86.3 |
| MS.gene37743.t1 | MTR_2g073010 | 31.707 | 205 | 109 | 8 | 1 | 200 | 8 | 186 | 2.03e-20 | 85.1 |
| MS.gene37743.t1 | MTR_0100s0150 | 33.333 | 207 | 116 | 8 | 11 | 210 | 8 | 199 | 3.06e-20 | 84.7 |
| MS.gene37743.t1 | MTR_3g014820 | 32.536 | 209 | 117 | 8 | 11 | 210 | 8 | 201 | 3.32e-20 | 84.7 |
| MS.gene37743.t1 | MTR_3g106620 | 28.636 | 220 | 124 | 8 | 3 | 213 | 5 | 200 | 2.46e-19 | 82.8 |
| MS.gene37743.t1 | MTR_0211s0080 | 32.212 | 208 | 114 | 9 | 11 | 210 | 8 | 196 | 3.82e-19 | 82.0 |
| MS.gene37743.t1 | MTR_8g059790 | 34.574 | 188 | 102 | 9 | 30 | 210 | 29 | 202 | 3.90e-18 | 79.3 |
| MS.gene37743.t1 | MTR_0302s0030 | 31.401 | 207 | 121 | 7 | 11 | 210 | 8 | 200 | 3.91e-18 | 79.3 |
| MS.gene37743.t1 | MTR_8g461050 | 30.435 | 207 | 123 | 7 | 11 | 210 | 8 | 200 | 3.95e-18 | 79.3 |
| MS.gene37743.t1 | MTR_0084s0030 | 31.884 | 207 | 120 | 8 | 11 | 210 | 8 | 200 | 9.97e-18 | 78.2 |
| MS.gene37743.t1 | MTR_8g060550 | 30.622 | 209 | 118 | 9 | 11 | 210 | 8 | 198 | 9.96e-16 | 72.8 |
| MS.gene37743.t1 | MTR_8g461690 | 30.622 | 209 | 118 | 9 | 11 | 210 | 8 | 198 | 9.96e-16 | 72.8 |
| MS.gene37743.t1 | MTR_7g108815 | 33.333 | 180 | 97 | 10 | 28 | 200 | 25 | 188 | 1.01e-14 | 70.1 |
| MS.gene37743.t1 | MTR_6g078040 | 49.351 | 77 | 35 | 3 | 103 | 177 | 1 | 75 | 1.15e-14 | 67.4 |
| MS.gene37743.t1 | MTR_6g059650 | 30.808 | 198 | 111 | 8 | 25 | 213 | 23 | 203 | 3.23e-14 | 68.9 |
| MS.gene37743.t1 | MTR_6g059410 | 31.019 | 216 | 117 | 9 | 1 | 209 | 1 | 191 | 2.39e-12 | 63.9 |
| MS.gene37743.t1 | MTR_2g072980 | 30.882 | 204 | 119 | 8 | 1 | 202 | 5 | 188 | 4.79e-12 | 62.8 |
| MS.gene37743.t1 | MTR_6g017225 | 28.283 | 198 | 121 | 7 | 5 | 200 | 11 | 189 | 8.80e-12 | 63.5 |
| MS.gene37743.t1 | MTR_6g059760 | 32.212 | 208 | 113 | 12 | 10 | 209 | 12 | 199 | 3.85e-11 | 60.5 |
| MS.gene37743.t1 | MTR_6g009650 | 28.365 | 208 | 127 | 6 | 5 | 209 | 11 | 199 | 7.23e-11 | 59.7 |
| MS.gene37743.t1 | MTR_6g009563 | 27.619 | 210 | 134 | 6 | 3 | 209 | 6 | 200 | 8.63e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37743.t1 | AT1G17860 | 45.933 | 209 | 91 | 7 | 4 | 210 | 5 | 193 | 4.39e-50 | 161 |
| MS.gene37743.t1 | AT1G73260 | 35.407 | 209 | 116 | 9 | 8 | 212 | 12 | 205 | 4.69e-24 | 95.5 |
| MS.gene37743.t1 | AT1G73325 | 32.558 | 215 | 119 | 11 | 5 | 212 | 8 | 203 | 1.29e-17 | 78.6 |
Find 74 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCCTAATAACACCTTTCTT+AGG | 0.178129 | 6.3:-72170282 | None:intergenic |
| GCAGGAATGTTGGGGTCTTT+AGG | 0.226794 | 6.3:+72170535 | MS.gene37743:CDS |
| ACTCTTCACATGCTGTATTA+AGG | 0.241608 | 6.3:-72170332 | None:intergenic |
| CAGGAATGTTGGGGTCTTTA+GGG | 0.264531 | 6.3:+72170536 | MS.gene37743:CDS |
| ACCCTAAGAAAGGTGTTATT+AGG | 0.266748 | 6.3:+72170280 | MS.gene37743:CDS |
| ACACCTTTCTTAGGGTTAAC+AGG | 0.290681 | 6.3:-72170273 | None:intergenic |
| CCCTAAGAAAGGTGTTATTA+GGG | 0.319854 | 6.3:+72170281 | MS.gene37743:CDS |
| GTCACTACCGGTGGGGTTCT+TGG | 0.322883 | 6.3:+72170405 | MS.gene37743:CDS |
| GACCGTCACATGGGGTTGTT+GGG | 0.328174 | 6.3:-72170134 | None:intergenic |
| TAATATGTATACTGATTTCA+TGG | 0.347087 | 6.3:-72169986 | None:intergenic |
| ATTGTCAACGGTGTCCTTGC+CGG | 0.371760 | 6.3:-72170433 | None:intergenic |
| CTCAATGTTGTAGTGGTTGA+GGG | 0.376701 | 6.3:+72170222 | MS.gene37743:CDS |
| CTGATGTGCCATACAAAGTT+AGG | 0.386416 | 6.3:+72170589 | MS.gene37743:CDS |
| AGCTTCTCCGAGCAAGGGTT+GGG | 0.386871 | 6.3:-72170034 | None:intergenic |
| CTCTTCACATGCTGTATTAA+GGG | 0.397035 | 6.3:-72170331 | None:intergenic |
| CGACCGTCACATGGGGTTGT+TGG | 0.401200 | 6.3:-72170135 | None:intergenic |
| GGTTGACACAGAAGGCAAAA+AGG | 0.410166 | 6.3:+72170077 | MS.gene37743:CDS |
| AGGTCATGTGCAGGAATGTT+GGG | 0.410673 | 6.3:+72170526 | MS.gene37743:CDS |
| CCCTAATAACACCTTTCTTA+GGG | 0.414565 | 6.3:-72170281 | None:intergenic |
| ACTCAATGTTGTAGTGGTTG+AGG | 0.421669 | 6.3:+72170221 | MS.gene37743:CDS |
| GCAAGGACACCGTTGACAAT+TGG | 0.438091 | 6.3:+72170436 | MS.gene37743:CDS |
| TTGTCAACGGTGTCCTTGCC+GGG | 0.438512 | 6.3:-72170432 | None:intergenic |
| GGGTCTTTAGGGATAGTAAT+GGG | 0.443885 | 6.3:+72170547 | MS.gene37743:CDS |
| GGTTGGAACCTAACTTTGTA+TGG | 0.454358 | 6.3:-72170597 | None:intergenic |
| CAGCTTCTCCGAGCAAGGGT+TGG | 0.454758 | 6.3:-72170035 | None:intergenic |
| ACCCCTGTTAACCCTAAGAA+AGG | 0.480020 | 6.3:+72170270 | MS.gene37743:CDS |
| CACCTTTCTTAGGGTTAACA+GGG | 0.482056 | 6.3:-72170272 | None:intergenic |
| ACAACCCCATGTGACGGTCG+TGG | 0.487075 | 6.3:+72170138 | MS.gene37743:CDS |
| TCTGTGTCAACCACTTGCTC+AGG | 0.489109 | 6.3:-72170066 | None:intergenic |
| TTGTCCACCCAACCCTTGCT+CGG | 0.489235 | 6.3:+72170027 | MS.gene37743:CDS |
| TCACATGGGGTTGTTGGGAC+TGG | 0.490110 | 6.3:-72170129 | None:intergenic |
| GGGCCTTGTGTCGTTGGTAG+TGG | 0.492648 | 6.3:+72170159 | MS.gene37743:CDS |
| TTGAGTGGACATGTCTCGTT+TGG | 0.518641 | 6.3:-72170204 | None:intergenic |
| CATGTGAAGAGTCCACGATA+TGG | 0.519311 | 6.3:+72170343 | MS.gene37743:CDS |
| AAATACTTCAAGCAGATGGT+TGG | 0.522101 | 6.3:-72170614 | None:intergenic |
| AGCGTCAGCTTCTCCGAGCA+AGG | 0.525965 | 6.3:-72170040 | None:intergenic |
| TTGAAAATACTTCAAGCAGA+TGG | 0.530226 | 6.3:-72170618 | None:intergenic |
| GGTCGTGGGCCTTGTGTCGT+TGG | 0.531326 | 6.3:+72170153 | MS.gene37743:CDS |
| CAAGGCCCACGACCGTCACA+TGG | 0.537215 | 6.3:-72170144 | None:intergenic |
| GAGCAAGGGTTGGGTGGACA+AGG | 0.544353 | 6.3:-72170025 | None:intergenic |
| AAGGTCATGTGCAGGAATGT+TGG | 0.544552 | 6.3:+72170525 | MS.gene37743:CDS |
| ATGGGGTTGTTGGGACTGGT+CGG | 0.548036 | 6.3:-72170125 | None:intergenic |
| CAACCCCATGTGACGGTCGT+GGG | 0.550816 | 6.3:+72170139 | MS.gene37743:CDS |
| GGTGGGGTTCTTGGAAATCC+CGG | 0.552765 | 6.3:+72170414 | MS.gene37743:CDS |
| TTGATTCCTCATCTGGACAA+TGG | 0.554639 | 6.3:+72170379 | MS.gene37743:CDS |
| ATCATCAAGCGTCCATATCG+TGG | 0.559535 | 6.3:-72170355 | None:intergenic |
| CAATGGTTTGTCACTACCGG+TGG | 0.561342 | 6.3:+72170396 | MS.gene37743:CDS |
| AATGGTTTGTCACTACCGGT+GGG | 0.564160 | 6.3:+72170397 | MS.gene37743:CDS |
| GGACAATGGTTTGTCACTAC+CGG | 0.566652 | 6.3:+72170393 | MS.gene37743:CDS |
| AAGGCCCACGACCGTCACAT+GGG | 0.567219 | 6.3:-72170143 | None:intergenic |
| TGTCTTGATGTTAAGATCAG+TGG | 0.570079 | 6.3:-72170307 | None:intergenic |
| TGACGCTTCACCTGAGCAAG+TGG | 0.575987 | 6.3:+72170056 | MS.gene37743:CDS |
| AATCTTGAACCAATTGTCAA+CGG | 0.580218 | 6.3:-72170445 | None:intergenic |
| AAACCACTACCAACGACACA+AGG | 0.584030 | 6.3:-72170162 | None:intergenic |
| GGGGTCTTTAGGGATAGTAA+TGG | 0.589720 | 6.3:+72170546 | MS.gene37743:CDS |
| TTCTCCGAGCAAGGGTTGGG+TGG | 0.598373 | 6.3:-72170031 | None:intergenic |
| GTCCCAACAACCCCATGTGA+CGG | 0.605160 | 6.3:+72170132 | MS.gene37743:CDS |
| GACAAACCATTGTCCAGATG+AGG | 0.609229 | 6.3:-72170385 | None:intergenic |
| TGCAGAAATCACATACCGTA+GGG | 0.614159 | 6.3:-72170503 | None:intergenic |
| GCGTCAGCTTCTCCGAGCAA+GGG | 0.616662 | 6.3:-72170039 | None:intergenic |
| TCAACCACTACAACATTGAG+TGG | 0.618412 | 6.3:-72170219 | None:intergenic |
| GGTCATGTGCAGGAATGTTG+GGG | 0.620344 | 6.3:+72170527 | MS.gene37743:CDS |
| GAGCAAGTGGTTGACACAGA+AGG | 0.621958 | 6.3:+72170069 | MS.gene37743:CDS |
| ATTTCTGCAAGGTCATGTGC+AGG | 0.628252 | 6.3:+72170517 | MS.gene37743:CDS |
| TTGCAGAAATCACATACCGT+AGG | 0.628538 | 6.3:-72170504 | None:intergenic |
| TACGGTATGTGATTTCTGCA+AGG | 0.630885 | 6.3:+72170506 | MS.gene37743:CDS |
| GGGATTTCCAAGAACCCCAC+CGG | 0.635438 | 6.3:-72170412 | None:intergenic |
| AGGCCCACGACCGTCACATG+GGG | 0.644940 | 6.3:-72170142 | None:intergenic |
| ATGTCCACTCAATGTTGTAG+TGG | 0.670052 | 6.3:+72170215 | MS.gene37743:CDS |
| ATGGTTTGTCACTACCGGTG+GGG | 0.675340 | 6.3:+72170398 | MS.gene37743:CDS |
| ACCTTTCTTAGGGTTAACAG+GGG | 0.679673 | 6.3:-72170271 | None:intergenic |
| GGTTCTTGGAAATCCCGGCA+AGG | 0.687124 | 6.3:+72170419 | MS.gene37743:CDS |
| TCGGATGTAGTAGTCTACTC+CGG | 0.689014 | 6.3:-72170106 | None:intergenic |
| TAGTAATGGGAATCAGCGTG+TGG | 0.693799 | 6.3:+72170560 | MS.gene37743:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| AATCTTGAACCAATTGTCAA+CGG | - | chr6.3:72170448-72170467 | None:intergenic | 30.0% | |
| ACCCTAATAACACCTTTCTT+AGG | - | chr6.3:72170285-72170304 | None:intergenic | 35.0% | |
| ACTCTTCACATGCTGTATTA+AGG | - | chr6.3:72170335-72170354 | None:intergenic | 35.0% | |
| CCCTAATAACACCTTTCTTA+GGG | - | chr6.3:72170284-72170303 | None:intergenic | 35.0% | |
| CTCTTCACATGCTGTATTAA+GGG | - | chr6.3:72170334-72170353 | None:intergenic | 35.0% | |
| TGTCTTGATGTTAAGATCAG+TGG | - | chr6.3:72170310-72170329 | None:intergenic | 35.0% | |
| !! | ACCCTAAGAAAGGTGTTATT+AGG | + | chr6.3:72170280-72170299 | MS.gene37743:CDS | 35.0% |
| !! | CCCTAAGAAAGGTGTTATTA+GGG | + | chr6.3:72170281-72170300 | MS.gene37743:CDS | 35.0% |
| !!! | GATGATTTTGATTCCTCATC+TGG | + | chr6.3:72170372-72170391 | MS.gene37743:CDS | 35.0% |
| ACACAGAAGGCAAAAAGGTT+CGG | + | chr6.3:72170082-72170101 | MS.gene37743:CDS | 40.0% | |
| ACACCTTTCTTAGGGTTAAC+AGG | - | chr6.3:72170276-72170295 | None:intergenic | 40.0% | |
| ACCTTTCTTAGGGTTAACAG+GGG | - | chr6.3:72170274-72170293 | None:intergenic | 40.0% | |
| ACTCAATGTTGTAGTGGTTG+AGG | + | chr6.3:72170221-72170240 | MS.gene37743:CDS | 40.0% | |
| ATGTCCACTCAATGTTGTAG+TGG | + | chr6.3:72170215-72170234 | MS.gene37743:CDS | 40.0% | |
| CACCTTTCTTAGGGTTAACA+GGG | - | chr6.3:72170275-72170294 | None:intergenic | 40.0% | |
| CTCAATGTTGTAGTGGTTGA+GGG | + | chr6.3:72170222-72170241 | MS.gene37743:CDS | 40.0% | |
| CTGATGTGCCATACAAAGTT+AGG | + | chr6.3:72170589-72170608 | MS.gene37743:CDS | 40.0% | |
| GGTTGGAACCTAACTTTGTA+TGG | - | chr6.3:72170600-72170619 | None:intergenic | 40.0% | |
| TACGGTATGTGATTTCTGCA+AGG | + | chr6.3:72170506-72170525 | MS.gene37743:CDS | 40.0% | |
| TCAACCACTACAACATTGAG+TGG | - | chr6.3:72170222-72170241 | None:intergenic | 40.0% | |
| TGCAGAAATCACATACCGTA+GGG | - | chr6.3:72170506-72170525 | None:intergenic | 40.0% | |
| TTGATTCCTCATCTGGACAA+TGG | + | chr6.3:72170379-72170398 | MS.gene37743:CDS | 40.0% | |
| TTGCAGAAATCACATACCGT+AGG | - | chr6.3:72170507-72170526 | None:intergenic | 40.0% | |
| ! | GGGTCTTTAGGGATAGTAAT+GGG | + | chr6.3:72170547-72170566 | MS.gene37743:CDS | 40.0% |
| ! | TAAGCTTGTGTTTTGCCCTA+CGG | + | chr6.3:72170488-72170507 | MS.gene37743:CDS | 40.0% |
| AAACCACTACCAACGACACA+AGG | - | chr6.3:72170165-72170184 | None:intergenic | 45.0% | |
| AAGGTCATGTGCAGGAATGT+TGG | + | chr6.3:72170525-72170544 | MS.gene37743:CDS | 45.0% | |
| ACCCCTGTTAACCCTAAGAA+AGG | + | chr6.3:72170270-72170289 | MS.gene37743:CDS | 45.0% | |
| AGGTCATGTGCAGGAATGTT+GGG | + | chr6.3:72170526-72170545 | MS.gene37743:CDS | 45.0% | |
| ATCATCAAGCGTCCATATCG+TGG | - | chr6.3:72170358-72170377 | None:intergenic | 45.0% | |
| ATTTCTGCAAGGTCATGTGC+AGG | + | chr6.3:72170517-72170536 | MS.gene37743:CDS | 45.0% | |
| CACAGAAGGCAAAAAGGTTC+GGG | + | chr6.3:72170083-72170102 | MS.gene37743:CDS | 45.0% | |
| CAGGAATGTTGGGGTCTTTA+GGG | + | chr6.3:72170536-72170555 | MS.gene37743:CDS | 45.0% | |
| CATGTGAAGAGTCCACGATA+TGG | + | chr6.3:72170343-72170362 | MS.gene37743:CDS | 45.0% | |
| GACAAACCATTGTCCAGATG+AGG | - | chr6.3:72170388-72170407 | None:intergenic | 45.0% | |
| GGTTGACACAGAAGGCAAAA+AGG | + | chr6.3:72170077-72170096 | MS.gene37743:CDS | 45.0% | |
| TCGGATGTAGTAGTCTACTC+CGG | - | chr6.3:72170109-72170128 | None:intergenic | 45.0% | |
| TTGAGTGGACATGTCTCGTT+TGG | - | chr6.3:72170207-72170226 | None:intergenic | 45.0% | |
| ! | AATGGTTTGTCACTACCGGT+GGG | + | chr6.3:72170397-72170416 | MS.gene37743:CDS | 45.0% |
| ! | GGACAATGGTTTGTCACTAC+CGG | + | chr6.3:72170393-72170412 | MS.gene37743:CDS | 45.0% |
| ! | GGGGTCTTTAGGGATAGTAA+TGG | + | chr6.3:72170546-72170565 | MS.gene37743:CDS | 45.0% |
| ! | TAGTAATGGGAATCAGCGTG+TGG | + | chr6.3:72170560-72170579 | MS.gene37743:CDS | 45.0% |
| ATTGTCAACGGTGTCCTTGC+CGG | - | chr6.3:72170436-72170455 | None:intergenic | 50.0% | |
| GAGCAAGTGGTTGACACAGA+AGG | + | chr6.3:72170069-72170088 | MS.gene37743:CDS | 50.0% | |
| GCAAGGACACCGTTGACAAT+TGG | + | chr6.3:72170436-72170455 | MS.gene37743:CDS | 50.0% | |
| GCAGGAATGTTGGGGTCTTT+AGG | + | chr6.3:72170535-72170554 | MS.gene37743:CDS | 50.0% | |
| GGTCATGTGCAGGAATGTTG+GGG | + | chr6.3:72170527-72170546 | MS.gene37743:CDS | 50.0% | |
| TCTGTGTCAACCACTTGCTC+AGG | - | chr6.3:72170069-72170088 | None:intergenic | 50.0% | |
| ! | ATGGTTTGTCACTACCGGTG+GGG | + | chr6.3:72170398-72170417 | MS.gene37743:CDS | 50.0% |
| ! | CAATGGTTTGTCACTACCGG+TGG | + | chr6.3:72170396-72170415 | MS.gene37743:CDS | 50.0% |
| ! | GTAGTGGTTGAGGGTTTTCG+TGG | + | chr6.3:72170231-72170250 | MS.gene37743:CDS | 50.0% |
| ! | GTTGAGGGTTTTCGTGGTCA+AGG | + | chr6.3:72170237-72170256 | MS.gene37743:CDS | 50.0% |
| AGCTTCTCCGAGCAAGGGTT+GGG | - | chr6.3:72170037-72170056 | None:intergenic | 55.0% | |
| GAAGGCAAAAAGGTTCGGGC+CGG | + | chr6.3:72170087-72170106 | MS.gene37743:CDS | 55.0% | |
| GACCGTCACATGGGGTTGTT+GGG | - | chr6.3:72170137-72170156 | None:intergenic | 55.0% | |
| GGGATTTCCAAGAACCCCAC+CGG | - | chr6.3:72170415-72170434 | None:intergenic | 55.0% | |
| GGTGGGGTTCTTGGAAATCC+CGG | + | chr6.3:72170414-72170433 | MS.gene37743:CDS | 55.0% | |
| GGTTCTTGGAAATCCCGGCA+AGG | + | chr6.3:72170419-72170438 | MS.gene37743:CDS | 55.0% | |
| GTCCCAACAACCCCATGTGA+CGG | + | chr6.3:72170132-72170151 | MS.gene37743:CDS | 55.0% | |
| TCACATGGGGTTGTTGGGAC+TGG | - | chr6.3:72170132-72170151 | None:intergenic | 55.0% | |
| TGACGCTTCACCTGAGCAAG+TGG | + | chr6.3:72170056-72170075 | MS.gene37743:CDS | 55.0% | |
| TTGTCAACGGTGTCCTTGCC+GGG | - | chr6.3:72170435-72170454 | None:intergenic | 55.0% | |
| TTGTCCACCCAACCCTTGCT+CGG | + | chr6.3:72170027-72170046 | MS.gene37743:CDS | 55.0% | |
| ! | ATGGGGTTGTTGGGACTGGT+CGG | - | chr6.3:72170128-72170147 | None:intergenic | 55.0% |
| AAGGCCCACGACCGTCACAT+GGG | - | chr6.3:72170146-72170165 | None:intergenic | 60.0% | |
| ACAACCCCATGTGACGGTCG+TGG | + | chr6.3:72170138-72170157 | MS.gene37743:CDS | 60.0% | |
| AGCGTCAGCTTCTCCGAGCA+AGG | - | chr6.3:72170043-72170062 | None:intergenic | 60.0% | |
| CAACCCCATGTGACGGTCGT+GGG | + | chr6.3:72170139-72170158 | MS.gene37743:CDS | 60.0% | |
| CAGCTTCTCCGAGCAAGGGT+TGG | - | chr6.3:72170038-72170057 | None:intergenic | 60.0% | |
| CGACCGTCACATGGGGTTGT+TGG | - | chr6.3:72170138-72170157 | None:intergenic | 60.0% | |
| GAGCAAGGGTTGGGTGGACA+AGG | - | chr6.3:72170028-72170047 | None:intergenic | 60.0% | |
| GCGTCAGCTTCTCCGAGCAA+GGG | - | chr6.3:72170042-72170061 | None:intergenic | 60.0% | |
| GTCACTACCGGTGGGGTTCT+TGG | + | chr6.3:72170405-72170424 | MS.gene37743:CDS | 60.0% | |
| TTCTCCGAGCAAGGGTTGGG+TGG | - | chr6.3:72170034-72170053 | None:intergenic | 60.0% | |
| ! | GGGCCTTGTGTCGTTGGTAG+TGG | + | chr6.3:72170159-72170178 | MS.gene37743:CDS | 60.0% |
| AGGCCCACGACCGTCACATG+GGG | - | chr6.3:72170145-72170164 | None:intergenic | 65.0% | |
| CAAGGCCCACGACCGTCACA+TGG | - | chr6.3:72170147-72170166 | None:intergenic | 65.0% | |
| ! | GGTCGTGGGCCTTGTGTCGT+TGG | + | chr6.3:72170153-72170172 | MS.gene37743:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 72169988 | 72170629 | 72169988 | ID=MS.gene37743 |
| chr6.3 | mRNA | 72169988 | 72170629 | 72169988 | ID=MS.gene37743.t1;Parent=MS.gene37743 |
| chr6.3 | exon | 72169988 | 72170629 | 72169988 | ID=MS.gene37743.t1.exon1;Parent=MS.gene37743.t1 |
| chr6.3 | CDS | 72169988 | 72170629 | 72169988 | ID=cds.MS.gene37743.t1;Parent=MS.gene37743.t1 |
| Gene Sequence |
| Protein sequence |
