AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049217


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049217.t1 MTR_3g097290 97.538 528 13 0 1 528 1 528 0.0 1051
MS.gene049217.t1 MTR_8g095320 82.979 517 83 1 12 523 7 523 0.0 872
MS.gene049217.t1 MTR_3g097290 96.316 380 14 0 1 380 1 380 0.0 756
MS.gene049217.t1 MTR_3g104260 73.021 341 92 0 104 444 85 425 0.0 518
MS.gene049217.t1 MTR_4g019850 72.434 341 94 0 104 444 88 428 1.03e-180 516
MS.gene049217.t1 MTR_4g019850 64.232 397 136 2 48 444 49 439 1.84e-180 516
MS.gene049217.t1 MTR_3g104260 70.352 199 59 0 104 302 85 283 1.22e-92 286
MS.gene049217.t1 MTR_4g087690 88.235 68 8 0 407 474 5 72 7.36e-34 124
MS.gene049217.t1 MTR_7g056307 65.217 46 16 0 393 438 88 133 9.25e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049217.t1 AT2G30390 79.476 458 81 3 82 527 56 512 0.0 719
MS.gene049217.t1 AT2G30390 77.778 468 81 4 82 527 56 522 0.0 711
MS.gene049217.t1 AT5G26030 72.700 337 92 0 109 445 84 420 0.0 536
MS.gene049217.t1 AT5G26030 72.700 337 92 0 109 445 84 420 0.0 536

Find 118 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTAATGTATTTACCTAAT+TGG 0.166560 3.3:+80535670 None:intergenic
TAGAATCTGGTATAGAAAAT+TGG 0.193496 3.3:-80535486 MS.gene049217:CDS
CGTAGCCTTCTCTGCTCTTT+GGG 0.196098 3.3:+80537988 None:intergenic
CCCAGTTTGTATCTGTTCTA+AGG 0.205657 3.3:-80538013 MS.gene049217:CDS
TGAAGAAAACTAAATATTCT+TGG 0.238006 3.3:+80538047 None:intergenic
CAGCATATGACTCGCAAAAT+AGG 0.241519 3.3:-80535039 MS.gene049217:CDS
TCCCTTCACCCTTGCCTATC+AGG 0.242398 3.3:-80535938 MS.gene049217:intron
GCGTAGCCTTCTCTGCTCTT+TGG 0.271574 3.3:+80537987 None:intergenic
ACTATTGTCTCATCTGTATA+GGG 0.288809 3.3:+80535733 None:intergenic
TGTACGTTGGCATGCGTTAC+TGG 0.292975 3.3:-80536918 MS.gene049217:CDS
TACGGAGGACGCTTGAAATT+AGG 0.301928 3.3:+80540139 None:intergenic
GAATATTATCGCCCTCTCTT+AGG 0.311916 3.3:-80534874 MS.gene049217:CDS
ACCCTCCTTCATTTCTGATT+TGG 0.315714 3.3:-80535437 MS.gene049217:CDS
ACATATTGTGTAGATTAAAA+AGG 0.324340 3.3:-80536628 MS.gene049217:intron
AGAATCTGGTATAGAAAATT+GGG 0.325244 3.3:-80535485 MS.gene049217:CDS
CGGAAGTGTACAAGAGTTAT+TGG 0.329755 3.3:-80535062 MS.gene049217:CDS
AACTATTGTCTCATCTGTAT+AGG 0.332380 3.3:+80535732 None:intergenic
CCCTTAGAACAGATACAAAC+TGG 0.345905 3.3:+80538012 None:intergenic
GTATGTTGGCTGTTCCAATT+AGG 0.349234 3.3:-80535684 MS.gene049217:intron
TGATGTTGAATACAAAGAAT+TGG 0.365400 3.3:-80535512 MS.gene049217:CDS
AAAAGTACACTACCTCTTTA+GGG 0.385426 3.3:+80536303 None:intergenic
AGACTTGAAGAAATCTCTTT+CGG 0.388879 3.3:-80536962 MS.gene049217:CDS
AGAAGCGTTGTTGAGTGTAT+AGG 0.390375 3.3:+80540162 None:intergenic
TGGCTCAAGCTTACGTCTAC+TGG 0.395244 3.3:-80536547 MS.gene049217:CDS
CGCCGGTGATAGTGTGGGAA+TGG 0.399628 3.3:-80535006 MS.gene049217:CDS
AAAGAATTGGCTCTAGAATC+TGG 0.400419 3.3:-80535499 MS.gene049217:CDS
GCCGGTGATAGTGTGGGAAT+GGG 0.419183 3.3:-80535005 MS.gene049217:CDS
GTATTACCGGGTCTGCAAAA+AGG 0.425292 3.3:+80538396 None:intergenic
AGCATATGACTCGCAAAATA+GGG 0.434303 3.3:-80535038 MS.gene049217:CDS
TGCACATCTTCTAGAGTCTC+TGG 0.435104 3.3:+80538434 None:intergenic
TCCTCCATCTCTGCCTTGTA+AGG 0.440499 3.3:+80536009 None:intergenic
CTTACATCGGATGATAAGAT+TGG 0.450453 3.3:-80538482 MS.gene049217:CDS
TTTAGTAGCTCGAACAGATC+AGG 0.450862 3.3:-80538522 MS.gene049217:CDS
CACTGAGGAAGCTATTGAAC+AGG 0.452384 3.3:-80536887 MS.gene049217:intron
TAGGAGGCGGAAGAAGTAGA+AGG 0.462934 3.3:+80540181 None:intergenic
TGGGGTGCCTCTTGCTTATG+TGG 0.465776 3.3:-80536046 MS.gene049217:CDS
TTCTTCTTACAGAGTAGAGT+TGG 0.465830 3.3:-80535775 MS.gene049217:intron
AGCACACAGTATTACCTTCA+TGG 0.466392 3.3:-80536394 MS.gene049217:CDS
CCAGTTTGTATCTGTTCTAA+GGG 0.466703 3.3:-80538012 MS.gene049217:CDS
TGGGGCCGTGTTCCTGCTCT+AGG 0.479445 3.3:-80535466 MS.gene049217:CDS
AGAGAAGGCTACGCTTCAAT+TGG 0.484687 3.3:-80537978 MS.gene049217:CDS
TCAACGTGAAGGATACATAA+AGG 0.485704 3.3:-80536369 MS.gene049217:CDS
ATTGAAAATTGTGGATAAAG+TGG 0.485887 3.3:+80536579 None:intergenic
ATGCCAACGTACACTTCAGC+AGG 0.486817 3.3:+80536928 None:intergenic
TTGAAAATTGTGGATAAAGT+GGG 0.490648 3.3:+80536580 None:intergenic
AAAAGGAGTGAAAAGTATGT+TGG 0.492369 3.3:-80535698 MS.gene049217:CDS
TAGACGTAAGCTTGAGCCAC+TGG 0.492475 3.3:+80536551 None:intergenic
GCCTCTTGCTTATGTGGAAG+AGG 0.493969 3.3:-80536040 MS.gene049217:CDS
TCAATAGCTTCCTCAGTGAA+TGG 0.508166 3.3:+80536892 None:intergenic
CTTCTGCTCTGGAGCTCATG+TGG 0.509145 3.3:-80538669 MS.gene049217:CDS
TTCAAGCCTCGAAGCTCGAC+AGG 0.509317 3.3:-80535368 MS.gene049217:intron
GGTGATAACGTGGCATGAGT+TGG 0.511540 3.3:+80540202 None:intergenic
ATCTGCCAAATCAGAAATGA+AGG 0.511624 3.3:+80535432 None:intergenic
AGAATACCTGTCGAGCTTCG+AGG 0.516022 3.3:+80535362 None:intergenic
TACCTGATAGGCAAGGGTGA+AGG 0.519996 3.3:+80535936 None:intergenic
GCGATCTGAAGCAAAACCCT+TGG 0.524130 3.3:-80538588 MS.gene049217:CDS
GAAGGCTACGCTTCAATTGG+TGG 0.524264 3.3:-80537975 MS.gene049217:CDS
CCCCATTCCCACACTATCAC+CGG 0.525373 3.3:+80535004 None:intergenic
ACCTGATAGGCAAGGGTGAA+GGG 0.530104 3.3:+80535937 None:intergenic
CTCTGCCTTGTAAGGATCAC+CGG 0.531288 3.3:+80536017 None:intergenic
TGGCAGTCTTTGGTTCCGCT+CGG 0.531313 3.3:-80535082 MS.gene049217:intron
TTCTGATGCAACTCTTACAT+CGG 0.532971 3.3:-80538495 MS.gene049217:CDS
GTCTACTGGAGAGTATATTC+CGG 0.534732 3.3:-80536533 MS.gene049217:intron
GCATCAGTTATACGTCTAAG+AGG 0.534824 3.3:+80537945 None:intergenic
GGAGTGTTATTGCTAAACCT+TGG 0.534970 3.3:-80538461 MS.gene049217:CDS
GTGTTATTGCTAAACCTTGG+AGG 0.536763 3.3:-80538458 MS.gene049217:CDS
CTAGAGTCTCTGGACCTCCA+AGG 0.539949 3.3:+80538444 None:intergenic
CTTGCTTATGTGGAAGAGGC+CGG 0.540854 3.3:-80536036 MS.gene049217:CDS
GATGAGACAATAGTTGAACT+TGG 0.541880 3.3:-80535724 MS.gene049217:CDS
TGCCATCGCCGGTGATAGTG+TGG 0.545471 3.3:-80535012 MS.gene049217:CDS
CACATGAGCTCCAGAGCAGA+AGG 0.547619 3.3:+80538670 None:intergenic
TGATCCTTACAAGGCAGAGA+TGG 0.558244 3.3:-80536013 MS.gene049217:CDS
TCTCCCACATGCTGGTGCCA+TGG 0.559559 3.3:-80535395 MS.gene049217:CDS
GTAGCCTTCTCTGCTCTTTG+GGG 0.559986 3.3:+80537989 None:intergenic
CTGCTCTGGAGCTCATGTGG+AGG 0.561511 3.3:-80538666 MS.gene049217:CDS
AGGGCCCCAAAGAGCAGAGA+AGG 0.564829 3.3:-80537993 MS.gene049217:CDS
GAGGGTTCACATCCTAGAGC+AGG 0.569494 3.3:+80535454 None:intergenic
AAAAGTGCTGAAACTTGGAA+TGG 0.570829 3.3:-80534974 MS.gene049217:CDS
AGTGATTGGTTGGAAACCAA+GGG 0.571366 3.3:+80538572 None:intergenic
AAAGGATGGAGTTACAAAGC+TGG 0.574958 3.3:-80536610 MS.gene049217:CDS
GGAATGTGTGGATTTGATCA+TGG 0.578572 3.3:-80535989 MS.gene049217:CDS
GGCTACGCTTCAATTGGTGG+TGG 0.579463 3.3:-80537972 MS.gene049217:CDS
ACAGATACAAACTGGGCCAA+TGG 0.580157 3.3:+80538020 None:intergenic
GGCAGAGATGGAGGAATGTG+TGG 0.580461 3.3:-80536001 MS.gene049217:CDS
AAATAGGGAGTTGCCATCGC+CGG 0.581354 3.3:-80535023 MS.gene049217:CDS
CTGGTTGATATTGAAAATTG+TGG 0.582519 3.3:+80536570 None:intergenic
GAGTGATTGGTTGGAAACCA+AGG 0.584680 3.3:+80538571 None:intergenic
TAGACGTATAACTGATGCAC+AGG 0.586568 3.3:-80537940 MS.gene049217:intron
AGAGGCCGGTGATCCTTACA+AGG 0.588173 3.3:-80536022 MS.gene049217:CDS
ATTGAAAGTCTCCCACATGC+TGG 0.593448 3.3:-80535403 MS.gene049217:CDS
TTCGAGGCTTGAAACTGCCA+TGG 0.598287 3.3:+80535378 None:intergenic
CCGGTGATAGTGTGGGAATG+GGG 0.604868 3.3:-80535004 MS.gene049217:CDS
AGATTCATTCACCTAAGAGA+GGG 0.609385 3.3:+80534863 None:intergenic
TCCCACACTATCACCGGCGA+TGG 0.610674 3.3:+80535010 None:intergenic
GTTGTTGAGTGTATAGGAGG+CGG 0.610694 3.3:+80540168 None:intergenic
GTAGAGTTGGACCTGTGGAA+TGG 0.613496 3.3:-80535762 MS.gene049217:CDS
CCTTCACGTTGATACCATGA+AGG 0.613635 3.3:+80536380 None:intergenic
TCCTTACAAGGCAGAGATGG+AGG 0.613774 3.3:-80536010 MS.gene049217:CDS
GAGATTCATTCACCTAAGAG+AGG 0.614460 3.3:+80534862 None:intergenic
AGCGTTGTTGAGTGTATAGG+AGG 0.618477 3.3:+80540165 None:intergenic
GCCTCTTCCACATAAGCAAG+AGG 0.629638 3.3:+80536039 None:intergenic
CACATCCTAGAGCAGGAACA+CGG 0.630017 3.3:+80535461 None:intergenic
CCTTCATGGTATCAACGTGA+AGG 0.631668 3.3:-80536380 MS.gene049217:CDS
AGGGCGATAATATTCCCCAT+TGG 0.635517 3.3:+80534882 None:intergenic
ACTGCCATGGCACCAGCATG+TGG 0.635936 3.3:+80535391 None:intergenic
TGCCAAATCAGAAATGAAGG+AGG 0.636616 3.3:+80535435 None:intergenic
CCTTAGAACAGATACAAACT+GGG 0.637491 3.3:+80538013 None:intergenic
GCCAAATCAGAAATGAAGGA+GGG 0.639074 3.3:+80535436 None:intergenic
GCCATCGCCGGTGATAGTGT+GGG 0.643544 3.3:-80535011 MS.gene049217:CDS
CTGCCATGGCACCAGCATGT+GGG 0.658693 3.3:+80535392 None:intergenic
TGAGAGGTACAGATTGCCTG+TGG 0.666000 3.3:+80538701 None:intergenic
ACAGAGTAGAGTTGGACCTG+TGG 0.670362 3.3:-80535767 MS.gene049217:intron
GAATCTGGTATAGAAAATTG+GGG 0.677200 3.3:-80535484 MS.gene049217:CDS
GTCCCTGCTGAAGTGTACGT+TGG 0.678902 3.3:-80536931 MS.gene049217:CDS
TGCCAACGTACACTTCAGCA+GGG 0.687637 3.3:+80536929 None:intergenic
AACTCTTGTACACTTCCGAG+CGG 0.698633 3.3:+80535067 None:intergenic
AGAAGTAGAAGGTGATAACG+TGG 0.709400 3.3:+80540192 None:intergenic
TTACTGGCATCCATTCACTG+AGG 0.806235 3.3:-80536902 MS.gene049217:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAAGTCATAATCAAA+AGG + chr3.3:80537203-80537222 None:intergenic 15.0%
!! AAGGAAAATAAATAAATAAC+AGG + chr3.3:80537184-80537203 None:intergenic 15.0%
!! ATAGGAAAATAATTATAATC+AGG + chr3.3:80538436-80538455 None:intergenic 15.0%
!! GAATTGTTATAAAAATTAGT+TGG - chr3.3:80535381-80535400 MS.gene049217:CDS 15.0%
!! TTAATAATCAGAATAATATG+TGG - chr3.3:80537539-80537558 MS.gene049217:intron 15.0%
!! TTATGATTTGAATTATGAAT+TGG - chr3.3:80538637-80538656 MS.gene049217:CDS 15.0%
!!! AATTGAAAGTATATTATCTT+TGG - chr3.3:80539986-80540005 MS.gene049217:intron 15.0%
!!! ATGAATAAATAATCATTTTC+CGG - chr3.3:80535864-80535883 MS.gene049217:intron 15.0%
!!! ATTATTAACATGATTGATTT+TGG + chr3.3:80537527-80537546 None:intergenic 15.0%
!!! TATATTATATTTACTTTTGC+AGG - chr3.3:80536358-80536377 MS.gene049217:CDS 15.0%
!!! TTTTTCAATTAAATTTGACA+TGG + chr3.3:80538745-80538764 None:intergenic 15.0%
!! AAAAGTAACTTCATAATCAT+CGG + chr3.3:80535736-80535755 None:intergenic 20.0%
!! AACTAATGTATTTACCTAAT+TGG + chr3.3:80539421-80539440 None:intergenic 20.0%
!! AATAAATAAATAACAGGAAG+TGG + chr3.3:80537178-80537197 None:intergenic 20.0%
!! AATTGTAAGTTAATCAGATT+AGG - chr3.3:80535768-80535787 MS.gene049217:intron 20.0%
!! ACATATTGTGTAGATTAAAA+AGG - chr3.3:80538460-80538479 MS.gene049217:CDS 20.0%
!! AGATCAAAATGTTAAGTTTA+TGG + chr3.3:80535687-80535706 None:intergenic 20.0%
!! ATTCATGATGAACAAATATT+TGG - chr3.3:80537574-80537593 MS.gene049217:intron 20.0%
!! ATTTGAAGAATATTTAACGT+GGG + chr3.3:80538596-80538615 None:intergenic 20.0%
!! CAATTAAAAGTGATCTAAAA+AGG + chr3.3:80537790-80537809 None:intergenic 20.0%
!! GAAAAAAAAAATTACCTGAT+AGG + chr3.3:80539167-80539186 None:intergenic 20.0%
!! GAATTAATCTTTCTAATATG+GGG - chr3.3:80539917-80539936 MS.gene049217:intron 20.0%
!! GCAAAAAGGTTAAATAAAAA+AGG + chr3.3:80536681-80536700 None:intergenic 20.0%
!! GGAATTAATCTTTCTAATAT+GGG - chr3.3:80539916-80539935 MS.gene049217:intron 20.0%
!! TATCATATTCATATGTTTCA+TGG + chr3.3:80539843-80539862 None:intergenic 20.0%
!! TATTTGAAGAATATTTAACG+TGG + chr3.3:80538597-80538616 None:intergenic 20.0%
!! TGAAGAAAACTAAATATTCT+TGG + chr3.3:80537044-80537063 None:intergenic 20.0%
!! TGATAATTAGTGATAAAATG+TGG + chr3.3:80536313-80536332 None:intergenic 20.0%
!! TGGAATTAATCTTTCTAATA+TGG - chr3.3:80539915-80539934 MS.gene049217:intron 20.0%
!! TGTTAGGATTATTGAATAAA+TGG - chr3.3:80535333-80535352 MS.gene049217:intron 20.0%
!!! ATAACAAAAATAAGAGTGTA+TGG - chr3.3:80535069-80535088 MS.gene049217:CDS 20.0%
!!! ATGATTATGAAGTTACTTTT+TGG - chr3.3:80535736-80535755 MS.gene049217:CDS 20.0%
!!! CATTTTATCACTAATTATCA+AGG - chr3.3:80536313-80536332 MS.gene049217:intron 20.0%
!!! CTTTTTAGATCACTTTTAAT+TGG - chr3.3:80537788-80537807 MS.gene049217:intron 20.0%
!!! TAAAAAGGTTTGGTTAATAT+GGG + chr3.3:80537775-80537794 None:intergenic 20.0%
!!! TCTTTTCAATTAGATATAGT+CGG - chr3.3:80539746-80539765 MS.gene049217:intron 20.0%
!!! TGCTTTGTAATCTAAAATAA+AGG - chr3.3:80538348-80538367 MS.gene049217:intron 20.0%
!!! TTGTAGTATTTGATCTATTT+TGG - chr3.3:80539895-80539914 MS.gene049217:intron 20.0%
! AAAAGTGATCTAAAAAGGTT+TGG + chr3.3:80537785-80537804 None:intergenic 25.0%
! AACAAAACAAAATACTAGTC+AGG + chr3.3:80539493-80539512 None:intergenic 25.0%
! AACATGTATGTTTAAATCTC+TGG - chr3.3:80539940-80539959 MS.gene049217:intron 25.0%
! AATCATTTCAATCAAGCTTT+CGG - chr3.3:80537959-80537978 MS.gene049217:CDS 25.0%
! ACAAGACTAAAACTAAAACA+AGG + chr3.3:80539879-80539898 None:intergenic 25.0%
! AGAAGATAGAGAAGTAATTA+AGG + chr3.3:80537643-80537662 None:intergenic 25.0%
! AGAATCTGGTATAGAAAATT+GGG - chr3.3:80539603-80539622 MS.gene049217:intron 25.0%
! AGGTAATAATAGAATGAATG+AGG + chr3.3:80538072-80538091 None:intergenic 25.0%
! ATAATCAGAATAATATGTGG+AGG - chr3.3:80537542-80537561 MS.gene049217:intron 25.0%
! ATAGTTGAACTTGGAAAAAA+AGG - chr3.3:80539373-80539392 MS.gene049217:intron 25.0%
! ATATTCAAGCACTAATTTAC+CGG - chr3.3:80535997-80536016 MS.gene049217:CDS 25.0%
! ATTGAAAATTGTGGATAAAG+TGG + chr3.3:80538512-80538531 None:intergenic 25.0%
! ATTGTGTAGATTAAAAAGGA+TGG - chr3.3:80538464-80538483 MS.gene049217:CDS 25.0%
! CAATATAAAAATGCAAGAAG+CGG + chr3.3:80537917-80537936 None:intergenic 25.0%
! CGGTAAAATTAAATTGCTTT+CGG + chr3.3:80537897-80537916 None:intergenic 25.0%
! CTATATATAGAGAGAAGTTA+TGG + chr3.3:80537718-80537737 None:intergenic 25.0%
! GAAGATAGAGAAGTAATTAA+GGG + chr3.3:80537642-80537661 None:intergenic 25.0%
! TAGAATCTGGTATAGAAAAT+TGG - chr3.3:80539602-80539621 MS.gene049217:intron 25.0%
! TCTACACAATATGTTTCAAT+AGG + chr3.3:80538454-80538473 None:intergenic 25.0%
! TGATGTTGAATACAAAGAAT+TGG - chr3.3:80539576-80539595 MS.gene049217:intron 25.0%
! TTAAAATACAAGTCCAATGT+TGG - chr3.3:80537847-80537866 MS.gene049217:intron 25.0%
! TTGAAAATTGTGGATAAAGT+GGG + chr3.3:80538511-80538530 None:intergenic 25.0%
!! CTAAAAAGGTTTGGTTAATA+TGG + chr3.3:80537776-80537795 None:intergenic 25.0%
!! CTATTTAAAGACTTGCTTAT+AGG + chr3.3:80535464-80535483 None:intergenic 25.0%
!! GATTCATGTGATAACAATTT+TGG - chr3.3:80538890-80538909 MS.gene049217:intron 25.0%
!! TGTGTTGTTATAATGAGAAA+CGG + chr3.3:80535964-80535983 None:intergenic 25.0%
!!! ACTTAACATTTTGATCTATG+AGG - chr3.3:80535690-80535709 MS.gene049217:CDS 25.0%
!!! ATGATATTTTTTAGTGCACA+TGG - chr3.3:80539022-80539041 MS.gene049217:intron 25.0%
!!! ATGGATTTTTTTTCTTGAGA+TGG + chr3.3:80536030-80536049 None:intergenic 25.0%
!!! TGATATTTTTTAGTGCACAT+GGG - chr3.3:80539023-80539042 MS.gene049217:intron 25.0%
!!! TGTTTTTAGTCTCAAAAGAT+CGG - chr3.3:80539807-80539826 MS.gene049217:intron 25.0%
!!! TTCTTTGGAATTCAATTGTT+GGG - chr3.3:80535631-80535650 MS.gene049217:intron 25.0%
!!! TTTCTTTGGAATTCAATTGT+TGG - chr3.3:80535630-80535649 MS.gene049217:intron 25.0%
AAAAAATTACCTGATAGGCA+AGG + chr3.3:80539162-80539181 None:intergenic 30.0%
AAAAATTACCTGATAGGCAA+GGG + chr3.3:80539161-80539180 None:intergenic 30.0%
AAAAGATTAAGGACCAAGTT+TGG + chr3.3:80535159-80535178 None:intergenic 30.0%
AACTATTGTCTCATCTGTAT+AGG + chr3.3:80539359-80539378 None:intergenic 30.0%
ACAGCAAAAATGACAATCTT+AGG + chr3.3:80536971-80536990 None:intergenic 30.0%
ACTATTGTCTCATCTGTATA+GGG + chr3.3:80539358-80539377 None:intergenic 30.0%
AGACTTGAAGAAATCTCTTT+CGG - chr3.3:80538126-80538145 MS.gene049217:intron 30.0%
AGTCAATAGTAGAATCTCAT+TGG + chr3.3:80537999-80538018 None:intergenic 30.0%
ATAAGTATCTAATAGGGTGT+GGG + chr3.3:80537749-80537768 None:intergenic 30.0%
ATATTATCTTTGGCAGTCTT+TGG - chr3.3:80539996-80540015 MS.gene049217:intron 30.0%
CATGATGAACAAATATTTGG+TGG - chr3.3:80537577-80537596 MS.gene049217:intron 30.0%
CATTGTAAATGGAAGACTTA+CGG + chr3.3:80534970-80534989 None:intergenic 30.0%
CTAAATGTGTGAAAAGAAAC+CGG + chr3.3:80535886-80535905 None:intergenic 30.0%
CTTCGTATGTTTAGAGAAAA+GGG + chr3.3:80536106-80536125 None:intergenic 30.0%
GAAAGAATAGCACAATGATA+TGG - chr3.3:80537386-80537405 MS.gene049217:intron 30.0%
GAAAGCTTGATTGAAATGAT+TGG + chr3.3:80537960-80537979 None:intergenic 30.0%
GAATCTGGTATAGAAAATTG+GGG - chr3.3:80539604-80539623 MS.gene049217:intron 30.0%
GGGCTTATAAGTATCTAATA+GGG + chr3.3:80537755-80537774 None:intergenic 30.0%
GTTGGATTCCAAAAAGATTA+AGG + chr3.3:80535170-80535189 None:intergenic 30.0%
TAATTGGACTTCAACTTAAG+TGG - chr3.3:80537804-80537823 MS.gene049217:intron 30.0%
TATAAGTATCTAATAGGGTG+TGG + chr3.3:80537750-80537769 None:intergenic 30.0%
TCTCTATCTTCTTCTGATAT+AGG - chr3.3:80537651-80537670 MS.gene049217:intron 30.0%
TGAAATGATTGGAAAGAGTA+AGG + chr3.3:80537949-80537968 None:intergenic 30.0%
TGAACTAATCATGTTTGAGT+AGG - chr3.3:80537268-80537287 MS.gene049217:intron 30.0%
TGAGAAAACAGCTTATAACA+TGG + chr3.3:80535095-80535114 None:intergenic 30.0%
TGGGCTTATAAGTATCTAAT+AGG + chr3.3:80537756-80537775 None:intergenic 30.0%
TGGGTAATAAAAGTAATCAC+CGG + chr3.3:80538577-80538596 None:intergenic 30.0%
TGTTGAGGAGAAATATTTGT+TGG - chr3.3:80537499-80537518 MS.gene049217:intron 30.0%
TTAGGATACAATACTGAGTA+TGG - chr3.3:80535786-80535805 MS.gene049217:intron 30.0%
TTCGTATGTTTAGAGAAAAG+GGG + chr3.3:80536105-80536124 None:intergenic 30.0%
TTTACAGTGTTGTCAAATAG+TGG - chr3.3:80536751-80536770 MS.gene049217:intron 30.0%
! AAAAAGTACACTACCTCTTT+AGG + chr3.3:80538789-80538808 None:intergenic 30.0%
! AAAAGGAGTGAAAAGTATGT+TGG - chr3.3:80539390-80539409 MS.gene049217:intron 30.0%
! AAAAGTACACTACCTCTTTA+GGG + chr3.3:80538788-80538807 None:intergenic 30.0%
! AACAGTTCATGAAGTTTTCT+TGG - chr3.3:80539264-80539283 MS.gene049217:intron 30.0%
! AACTTGGTCCTTAATCTTTT+TGG - chr3.3:80535159-80535178 MS.gene049217:intron 30.0%
! ATCCAATGTATAGCTTCTTT+TGG - chr3.3:80535838-80535857 MS.gene049217:intron 30.0%
! ATTCCTGTTTCTCTTTGTTA+GGG - chr3.3:80538915-80538934 MS.gene049217:intron 30.0%
! CAATTTTCAATATCAACCAG+TGG - chr3.3:80538521-80538540 MS.gene049217:CDS 30.0%
! CTGGTTGATATTGAAAATTG+TGG + chr3.3:80538521-80538540 None:intergenic 30.0%
! TAAAGTGCTCTTTCTTTCTT+TGG - chr3.3:80535616-80535635 MS.gene049217:intron 30.0%
! TAATTCCAAGTAATTTGTGC+AGG - chr3.3:80538997-80539016 MS.gene049217:intron 30.0%
! TAGTTTTCTTCAAAAGCCAT+TGG - chr3.3:80537052-80537071 MS.gene049217:intron 30.0%
! TATTCCTGTTTCTCTTTGTT+AGG - chr3.3:80538914-80538933 MS.gene049217:intron 30.0%
! TATTTTATGTCCAATCTCAC+AGG - chr3.3:80537004-80537023 MS.gene049217:intron 30.0%
! TGAACAAATATTTGGTGGTT+TGG - chr3.3:80537582-80537601 MS.gene049217:intron 30.0%
! TGTAAAAGCTAGAGTATTAC+CGG + chr3.3:80536708-80536727 None:intergenic 30.0%
! TTGTATCGTAAGTTTTCCTT+CGG - chr3.3:80535265-80535284 MS.gene049217:intron 30.0%
!! AAAAAGCACATGTTTTCAGT+GGG - chr3.3:80536540-80536559 MS.gene049217:CDS 30.0%
!! ACAAAGAGTACTTGATTCTA+AGG + chr3.3:80535297-80535316 None:intergenic 30.0%
!! ATGTTTAAATCTCTGGAATC+TGG - chr3.3:80539947-80539966 MS.gene049217:intron 30.0%
!! TAGTTGGTTAGTTTGTTATG+TGG - chr3.3:80535397-80535416 MS.gene049217:CDS 30.0%
!! TGATAGTGTTTTTCACCAAT+GGG - chr3.3:80540191-80540210 MS.gene049217:CDS 30.0%
!!! GATATTTTTTAGTGCACATG+GGG - chr3.3:80539024-80539043 MS.gene049217:intron 30.0%
!!! TTTCTCACTAGTTTTTAGCT+TGG - chr3.3:80535108-80535127 MS.gene049217:intron 30.0%
!!! TTTTGTTTTGTTAACTCGTG+CGG - chr3.3:80539501-80539520 MS.gene049217:intron 30.0%
AATCCCTAACAAAGAGAAAC+AGG + chr3.3:80538921-80538940 None:intergenic 35.0%
ACAATGCTATAGCTGCTATT+TGG + chr3.3:80536855-80536874 None:intergenic 35.0%
ACTAGTCAGGTCTAAGAAAA+AGG + chr3.3:80539480-80539499 None:intergenic 35.0%
AGAATAGCACAATGATATGG+CGG - chr3.3:80537389-80537408 MS.gene049217:intron 35.0%
AGCATATGACTCGCAAAATA+GGG - chr3.3:80540050-80540069 MS.gene049217:intron 35.0%
AGGGAAGAAATAGAACATGT+TGG + chr3.3:80535188-80535207 None:intergenic 35.0%
ATCTGCCAAATCAGAAATGA+AGG + chr3.3:80539659-80539678 None:intergenic 35.0%
ATGTAGTTTCAACGACTTCA+TGG - chr3.3:80538814-80538833 MS.gene049217:intron 35.0%
CAACAGTTACTGCATAAAAG+TGG + chr3.3:80537484-80537503 None:intergenic 35.0%
CAACTAAGCTAATCCAAACT+TGG - chr3.3:80535143-80535162 MS.gene049217:intron 35.0%
CATGAGAGTCACATTGTAAA+TGG + chr3.3:80534981-80535000 None:intergenic 35.0%
CATGTTATGAATCCCTTCTA+GGG + chr3.3:80535207-80535226 None:intergenic 35.0%
CATTGGATCTTTATAGAGCA+CGG + chr3.3:80535826-80535845 None:intergenic 35.0%
CATTGGTGAAAAACACTATC+AGG + chr3.3:80540192-80540211 None:intergenic 35.0%
CCAGTTTGTATCTGTTCTAA+GGG - chr3.3:80537076-80537095 MS.gene049217:intron 35.0%
CCTTAGAACAGATACAAACT+GGG + chr3.3:80537078-80537097 None:intergenic 35.0%
CGTATAATATCCTGTGAGAT+TGG + chr3.3:80537017-80537036 None:intergenic 35.0%
CTAGTCAGGTCTAAGAAAAA+GGG + chr3.3:80539479-80539498 None:intergenic 35.0%
CTCCAAAAGAAGCTATACAT+TGG + chr3.3:80535843-80535862 None:intergenic 35.0%
CTTACATCGGATGATAAGAT+TGG - chr3.3:80536606-80536625 MS.gene049217:CDS 35.0%
GAAGTCGTTGAAACTACATA+AGG + chr3.3:80538813-80538832 None:intergenic 35.0%
GACTATAGAATAACAAAGCC+TGG + chr3.3:80537301-80537320 None:intergenic 35.0%
GATGAGACAATAGTTGAACT+TGG - chr3.3:80539364-80539383 MS.gene049217:intron 35.0%
GCTTCGTATGTTTAGAGAAA+AGG + chr3.3:80536107-80536126 None:intergenic 35.0%
GCTTTCGGAGTAAATATTGT+TGG + chr3.3:80537882-80537901 None:intergenic 35.0%
TAATCATCGGTAGTTGTTAC+TGG + chr3.3:80535723-80535742 None:intergenic 35.0%
TCAACGTGAAGGATACATAA+AGG - chr3.3:80538719-80538738 MS.gene049217:intron 35.0%
TCTATGTCAAGTCTACTGTT+AGG - chr3.3:80535317-80535336 MS.gene049217:intron 35.0%
TCTCTCTATATATAGAACCC+TGG - chr3.3:80537723-80537742 MS.gene049217:intron 35.0%
TGATAAAGATTATGCCACCA+GGG - chr3.3:80538274-80538293 MS.gene049217:intron 35.0%
TGTGGCATAAAAAATGCATG+AGG + chr3.3:80536295-80536314 None:intergenic 35.0%
TTATGGTCACAATACAACAC+AGG + chr3.3:80535670-80535689 None:intergenic 35.0%
TTCTGATGCAACTCTTACAT+CGG - chr3.3:80536593-80536612 MS.gene049217:CDS 35.0%
TTCTTCTTACAGAGTAGAGT+TGG - chr3.3:80539313-80539332 MS.gene049217:intron 35.0%
TTGATAAAGATTATGCCACC+AGG - chr3.3:80538273-80538292 MS.gene049217:intron 35.0%
TTGGATCATCAATCCAACAT+TGG + chr3.3:80537863-80537882 None:intergenic 35.0%
! ATTTAACCTTTTTGCAGACC+CGG - chr3.3:80536686-80536705 MS.gene049217:intron 35.0%
! CAATGTATAGCTTCTTTTGG+AGG - chr3.3:80535841-80535860 MS.gene049217:intron 35.0%
! CTTTTATGCAGTAACTGTTG+AGG - chr3.3:80537484-80537503 MS.gene049217:intron 35.0%
! GATAGTGTTTTTCACCAATG+GGG - chr3.3:80540192-80540211 MS.gene049217:CDS 35.0%
! GCTGCTATGTAATTTTTCAC+AGG + chr3.3:80536465-80536484 None:intergenic 35.0%
! GTAAAAGCTAGAGTATTACC+GGG + chr3.3:80536707-80536726 None:intergenic 35.0%
! GTTCTATTTCTTCCCTAGAA+GGG - chr3.3:80535192-80535211 MS.gene049217:intron 35.0%
! TGAGTTGCATTTTTCATTGC+TGG - chr3.3:80538962-80538981 MS.gene049217:intron 35.0%
! TGTTCTATTTCTTCCCTAGA+AGG - chr3.3:80535191-80535210 MS.gene049217:intron 35.0%
! TTCTTGAGATGGATTTGAAC+CGG + chr3.3:80536019-80536038 None:intergenic 35.0%
! TTTTATCCCGCTATTCCTTT+AGG - chr3.3:80536935-80536954 MS.gene049217:CDS 35.0%
!! AAAAGTGCTGAAACTTGGAA+TGG - chr3.3:80540114-80540133 MS.gene049217:intron 35.0%
!! AAAGAATTGGCTCTAGAATC+TGG - chr3.3:80539589-80539608 MS.gene049217:intron 35.0%
!! CAAAAAGCACATGTTTTCAG+TGG - chr3.3:80536539-80536558 MS.gene049217:CDS 35.0%
!! CTGATAGTGTTTTTCACCAA+TGG - chr3.3:80540190-80540209 MS.gene049217:CDS 35.0%
!! TGACAAAAAGTGCTGAAACT+TGG - chr3.3:80540109-80540128 MS.gene049217:intron 35.0%
!!! ACATGTGCTTTTTGAGTGAT+TGG + chr3.3:80536533-80536552 None:intergenic 35.0%
!!! TCACTAGTTTTTAGCTTGGT+TGG - chr3.3:80535112-80535131 MS.gene049217:intron 35.0%
AAAGGATGGAGTTACAAAGC+TGG - chr3.3:80538478-80538497 MS.gene049217:CDS 40.0%
AACAACAACTCTATTGCCGA+GGG - chr3.3:80535545-80535564 MS.gene049217:CDS 40.0%
ACCCTCCTTCATTTCTGATT+TGG - chr3.3:80539651-80539670 MS.gene049217:intron 40.0%
AGATCGCAGTGAAGAAAAAC+TGG + chr3.3:80536487-80536506 None:intergenic 40.0%
AGCACACAGTATTACCTTCA+TGG - chr3.3:80538694-80538713 MS.gene049217:CDS 40.0%
ATACAACACAGGTAGAGGTT+AGG + chr3.3:80535659-80535678 None:intergenic 40.0%
ATAGCGCCTTCATTTGATAG+AGG - chr3.3:80535480-80535499 MS.gene049217:CDS 40.0%
ATCACGACCTAAAGGAATAG+CGG + chr3.3:80536945-80536964 None:intergenic 40.0%
CAGCATATGACTCGCAAAAT+AGG - chr3.3:80540049-80540068 MS.gene049217:intron 40.0%
CAGGTTTCAACAATGTGATC+AGG + chr3.3:80538417-80538436 None:intergenic 40.0%
CATGACCTGCACAAATTACT+TGG + chr3.3:80539005-80539024 None:intergenic 40.0%
CCATGTTATGAATCCCTTCT+AGG + chr3.3:80535208-80535227 None:intergenic 40.0%
CCCAGTTTGTATCTGTTCTA+AGG - chr3.3:80537075-80537094 MS.gene049217:intron 40.0%
CCCTTAGAACAGATACAAAC+TGG + chr3.3:80537079-80537098 None:intergenic 40.0%
CCTAGAAGGGATTCATAACA+TGG - chr3.3:80535205-80535224 MS.gene049217:intron 40.0%
GAATATTATCGCCCTCTCTT+AGG - chr3.3:80540214-80540233 MS.gene049217:CDS 40.0%
GATTGGAAAGAGTAAGGATG+AGG + chr3.3:80537943-80537962 None:intergenic 40.0%
GCATCAGTTATACGTCTAAG+AGG + chr3.3:80537146-80537165 None:intergenic 40.0%
GCCAAATCAGAAATGAAGGA+GGG + chr3.3:80539655-80539674 None:intergenic 40.0%
GGAATGTGTGGATTTGATCA+TGG - chr3.3:80539099-80539118 MS.gene049217:intron 40.0%
GGAGATCATTAGAAGAGCAA+AGG + chr3.3:80538092-80538111 None:intergenic 40.0%
TAACAACAACTCTATTGCCG+AGG - chr3.3:80535544-80535563 MS.gene049217:CDS 40.0%
TACACAACTCAGCAATGGAT+AGG - chr3.3:80535932-80535951 MS.gene049217:intron 40.0%
TACTCCCCTCTATCAAATGA+AGG + chr3.3:80535489-80535508 None:intergenic 40.0%
TAGACGTATAACTGATGCAC+AGG - chr3.3:80537148-80537167 MS.gene049217:intron 40.0%
TAGATACTCATCCTCTCTGA+AGG + chr3.3:80538664-80538683 None:intergenic 40.0%
TAGCGCCTTCATTTGATAGA+GGG - chr3.3:80535481-80535500 MS.gene049217:CDS 40.0%
TATGAATTGGTCCTTCAGAG+AGG - chr3.3:80538650-80538669 MS.gene049217:CDS 40.0%
TCAATAGCTTCCTCAGTGAA+TGG + chr3.3:80538199-80538218 None:intergenic 40.0%
TCACAATACAACACAGGTAG+AGG + chr3.3:80535664-80535683 None:intergenic 40.0%
TCGGTAGTTGTTACTGGTAA+TGG + chr3.3:80535717-80535736 None:intergenic 40.0%
TCTGTTACACAACTCAGCAA+TGG - chr3.3:80535927-80535946 MS.gene049217:intron 40.0%
TGCCAAATCAGAAATGAAGG+AGG + chr3.3:80539656-80539675 None:intergenic 40.0%
TGTAAATGGAAGACTTACGG+AGG + chr3.3:80534967-80534986 None:intergenic 40.0%
TTAGGTTCATCACGACCTAA+AGG + chr3.3:80536953-80536972 None:intergenic 40.0%
TTTAGTAGCTCGAACAGATC+AGG - chr3.3:80536566-80536585 MS.gene049217:CDS 40.0%
! AGAAGTAGAAGGTGATAACG+TGG + chr3.3:80534899-80534918 None:intergenic 40.0%
! AGAATGTGTGTTGATCTGGA+AGG + chr3.3:80537608-80537627 None:intergenic 40.0%
! AGAGAGAATGTGTGTTGATC+TGG + chr3.3:80537612-80537631 None:intergenic 40.0%
! AGTGATTGGTTGGAAACCAA+GGG + chr3.3:80536519-80536538 None:intergenic 40.0%
! CGGAAGTGTACAAGAGTTAT+TGG - chr3.3:80540026-80540045 MS.gene049217:intron 40.0%
! GATTCTAAGGACATTTCCGA+AGG + chr3.3:80535284-80535303 None:intergenic 40.0%
! GGAGTGTTATTGCTAAACCT+TGG - chr3.3:80536627-80536646 MS.gene049217:intron 40.0%
! GTATGTTGGCTGTTCCAATT+AGG - chr3.3:80539404-80539423 MS.gene049217:intron 40.0%
! GTCTACTGGAGAGTATATTC+CGG - chr3.3:80538555-80538574 MS.gene049217:CDS 40.0%
! GTGTTATTGCTAAACCTTGG+AGG - chr3.3:80536630-80536649 MS.gene049217:intron 40.0%
!! AGAAGCGTTGTTGAGTGTAT+AGG + chr3.3:80534929-80534948 None:intergenic 40.0%
!! GTGGTTCTAACTACTATTGC+TGG + chr3.3:80537465-80537484 None:intergenic 40.0%
!! TAGGGTTTTAACCATTCCAC+AGG + chr3.3:80539340-80539359 None:intergenic 40.0%
!!! GTGCTTTTTGAGTGATTGGT+TGG + chr3.3:80536529-80536548 None:intergenic 40.0%
AACTCTTGTACACTTCCGAG+CGG + chr3.3:80540024-80540043 None:intergenic 45.0%
ACAACAACTCTATTGCCGAG+GGG - chr3.3:80535546-80535565 MS.gene049217:CDS 45.0%
ACAGATACAAACTGGGCCAA+TGG + chr3.3:80537071-80537090 None:intergenic 45.0%
ACGAGACAATCTCTCTTCCA+AGG + chr3.3:80535576-80535595 None:intergenic 45.0%
AGAGAAGGCTACGCTTCAAT+TGG - chr3.3:80537110-80537129 MS.gene049217:intron 45.0%
AGCGCCTTCATTTGATAGAG+GGG - chr3.3:80535482-80535501 MS.gene049217:CDS 45.0%
AGCGTTGTTGAGTGTATAGG+AGG + chr3.3:80534926-80534945 None:intergenic 45.0%
AGGGCGATAATATTCCCCAT+TGG + chr3.3:80540209-80540228 None:intergenic 45.0%
AGTCTAGCAGGATCTTGAGA+TGG + chr3.3:80536049-80536068 None:intergenic 45.0%
ATTGAAAGTCTCCCACATGC+TGG - chr3.3:80539685-80539704 MS.gene049217:intron 45.0%
ATTGTAGAGCGATAGCAGGT+AGG + chr3.3:80538305-80538324 None:intergenic 45.0%
CACTGAGGAAGCTATTGAAC+AGG - chr3.3:80538201-80538220 MS.gene049217:intron 45.0%
CAGAAAAAGTCCTTCTGCTC+TGG - chr3.3:80536408-80536427 MS.gene049217:CDS 45.0%
CCTTCACGTTGATACCATGA+AGG + chr3.3:80538711-80538730 None:intergenic 45.0%
CCTTCATGGTATCAACGTGA+AGG - chr3.3:80538708-80538727 MS.gene049217:CDS 45.0%
GTATTACCGGGTCTGCAAAA+AGG + chr3.3:80536695-80536714 None:intergenic 45.0%
GTTGTTGAGTGTATAGGAGG+CGG + chr3.3:80534923-80534942 None:intergenic 45.0%
GTTTGAGTAGGAGTTGTTCC+AGG - chr3.3:80537280-80537299 MS.gene049217:intron 45.0%
TACGGAGGACGCTTGAAATT+AGG + chr3.3:80534952-80534971 None:intergenic 45.0%
TCACGACCTAAAGGAATAGC+GGG + chr3.3:80536944-80536963 None:intergenic 45.0%
TCGTATTGTAGAGCGATAGC+AGG + chr3.3:80538309-80538328 None:intergenic 45.0%
TCTAATGATCTCCTCTGCAC+AGG - chr3.3:80538099-80538118 MS.gene049217:intron 45.0%
TGATCCTTACAAGGCAGAGA+TGG - chr3.3:80539075-80539094 MS.gene049217:intron 45.0%
TTACTGGCATCCATTCACTG+AGG - chr3.3:80538186-80538205 MS.gene049217:intron 45.0%
! AGACAGAAAGTTGATCGCCT+AGG + chr3.3:80536182-80536201 None:intergenic 45.0%
! GAGTGATTGGTTGGAAACCA+AGG + chr3.3:80536520-80536539 None:intergenic 45.0%
!! GCAGAAGGACTTTTTCTGAG+AGG + chr3.3:80536406-80536425 None:intergenic 45.0%
!! TGCACATCTTCTAGAGTCTC+TGG + chr3.3:80536657-80536676 None:intergenic 45.0%
!!! GAGTTTTGACTGCCCTAAAG+AGG - chr3.3:80538773-80538792 MS.gene049217:intron 45.0%
AAATAGGGAGTTGCCATCGC+CGG - chr3.3:80540065-80540084 MS.gene049217:intron 50.0%
ACAGAGTAGAGTTGGACCTG+TGG - chr3.3:80539321-80539340 MS.gene049217:intron 50.0%
ACCTGATAGGCAAGGGTGAA+GGG + chr3.3:80539154-80539173 None:intergenic 50.0%
AGAATACCTGTCGAGCTTCG+AGG + chr3.3:80539729-80539748 None:intergenic 50.0%
ATAGCAGGTAGGAGAATCCC+TGG + chr3.3:80538294-80538313 None:intergenic 50.0%
ATCTAATAGGGTGTGGGCCA+GGG + chr3.3:80537743-80537762 None:intergenic 50.0%
ATGCCAACGTACACTTCAGC+AGG + chr3.3:80538163-80538182 None:intergenic 50.0%
CACATCCTAGAGCAGGAACA+CGG + chr3.3:80539630-80539649 None:intergenic 50.0%
CGTAGCCTTCTCTGCTCTTT+GGG + chr3.3:80537103-80537122 None:intergenic 50.0%
CTCTGCCTTGTAAGGATCAC+CGG + chr3.3:80539074-80539093 None:intergenic 50.0%
CTCTTCCAAGGATTTCCCCT+CGG + chr3.3:80535564-80535583 None:intergenic 50.0%
CTTGCTTATGTGGAAGAGGC+CGG - chr3.3:80539052-80539071 MS.gene049217:intron 50.0%
GAAGGCTACGCTTCAATTGG+TGG - chr3.3:80537113-80537132 MS.gene049217:intron 50.0%
GCCTCTTCCACATAAGCAAG+AGG + chr3.3:80539052-80539071 None:intergenic 50.0%
GCCTCTTGCTTATGTGGAAG+AGG - chr3.3:80539048-80539067 MS.gene049217:intron 50.0%
GTAGAGTTGGACCTGTGGAA+TGG - chr3.3:80539326-80539345 MS.gene049217:intron 50.0%
GTAGCCTTCTCTGCTCTTTG+GGG + chr3.3:80537102-80537121 None:intergenic 50.0%
TACCTGATAGGCAAGGGTGA+AGG + chr3.3:80539155-80539174 None:intergenic 50.0%
TAGACGTAAGCTTGAGCCAC+TGG + chr3.3:80538540-80538559 None:intergenic 50.0%
TAGGAGGCGGAAGAAGTAGA+AGG + chr3.3:80534910-80534929 None:intergenic 50.0%
TATCTAATAGGGTGTGGGCC+AGG + chr3.3:80537744-80537763 None:intergenic 50.0%
TATTGCCGAGGGGAAATCCT+TGG - chr3.3:80535556-80535575 MS.gene049217:intron 50.0%
TCCTCCATCTCTGCCTTGTA+AGG + chr3.3:80539082-80539101 None:intergenic 50.0%
TCCTTACAAGGCAGAGATGG+AGG - chr3.3:80539078-80539097 MS.gene049217:intron 50.0%
TGCCAACGTACACTTCAGCA+GGG + chr3.3:80538162-80538181 None:intergenic 50.0%
TGGCTCAAGCTTACGTCTAC+TGG - chr3.3:80538541-80538560 MS.gene049217:CDS 50.0%
TGTACGTTGGCATGCGTTAC+TGG - chr3.3:80538170-80538189 MS.gene049217:intron 50.0%
TTCGAGGCTTGAAACTGCCA+TGG + chr3.3:80539713-80539732 None:intergenic 50.0%
TTGATCGCCTAGGATGACAG+CGG + chr3.3:80536172-80536191 None:intergenic 50.0%
! GCGATCTGAAGCAAAACCCT+TGG - chr3.3:80536500-80536519 MS.gene049217:intron 50.0%
! GGTGATAACGTGGCATGAGT+TGG + chr3.3:80534889-80534908 None:intergenic 50.0%
! TGAGAGGTACAGATTGCCTG+TGG + chr3.3:80536390-80536409 None:intergenic 50.0%
!! GTTTTGACGAGCAGTCTAGC+AGG + chr3.3:80536061-80536080 None:intergenic 50.0%
AGAGGCCGGTGATCCTTACA+AGG - chr3.3:80539066-80539085 MS.gene049217:intron 55.0%
CAAGTCTTCAGCCTGTGCAG+AGG + chr3.3:80538113-80538132 None:intergenic 55.0%
CACATGAGCTCCAGAGCAGA+AGG + chr3.3:80536421-80536440 None:intergenic 55.0%
CCCCATTCCCACACTATCAC+CGG + chr3.3:80540087-80540106 None:intergenic 55.0%
CTAGAGTCTCTGGACCTCCA+AGG + chr3.3:80536647-80536666 None:intergenic 55.0%
CTCCTTACCGCTGTCATCCT+AGG - chr3.3:80536162-80536181 MS.gene049217:intron 55.0%
GAGGGTTCACATCCTAGAGC+AGG + chr3.3:80539637-80539656 None:intergenic 55.0%
GCGTAGCCTTCTCTGCTCTT+TGG + chr3.3:80537104-80537123 None:intergenic 55.0%
GGCAGAGATGGAGGAATGTG+TGG - chr3.3:80539087-80539106 MS.gene049217:intron 55.0%
GGCTACGCTTCAATTGGTGG+TGG - chr3.3:80537116-80537135 MS.gene049217:intron 55.0%
GTCCCTGCTGAAGTGTACGT+TGG - chr3.3:80538157-80538176 MS.gene049217:intron 55.0%
TCCCTTCACCCTTGCCTATC+AGG - chr3.3:80539150-80539169 MS.gene049217:intron 55.0%
TTCAAGCCTCGAAGCTCGAC+AGG - chr3.3:80539720-80539739 MS.gene049217:intron 55.0%
! CCGGTGATAGTGTGGGAATG+GGG - chr3.3:80540084-80540103 MS.gene049217:intron 55.0%
! GCCGGTGATAGTGTGGGAAT+GGG - chr3.3:80540083-80540102 MS.gene049217:intron 55.0%
! TGGCAGTCTTTGGTTCCGCT+CGG - chr3.3:80540006-80540025 MS.gene049217:intron 55.0%
! TGGGGTGCCTCTTGCTTATG+TGG - chr3.3:80539042-80539061 MS.gene049217:intron 55.0%
!! CTTCTGCTCTGGAGCTCATG+TGG - chr3.3:80536419-80536438 MS.gene049217:CDS 55.0%
ACTGCCATGGCACCAGCATG+TGG + chr3.3:80539700-80539719 None:intergenic 60.0%
AGCTGCAAGCACGCGTGATC+TGG - chr3.3:80537689-80537708 MS.gene049217:intron 60.0%
AGGGCCCCAAAGAGCAGAGA+AGG - chr3.3:80537095-80537114 MS.gene049217:intron 60.0%
CGCCTAGGATGACAGCGGTA+AGG + chr3.3:80536167-80536186 None:intergenic 60.0%
CTGCCATGGCACCAGCATGT+GGG + chr3.3:80539699-80539718 None:intergenic 60.0%
GCAGGTAGGAGAATCCCTGG+TGG + chr3.3:80538291-80538310 None:intergenic 60.0%
TCCCACACTATCACCGGCGA+TGG + chr3.3:80540081-80540100 None:intergenic 60.0%
! CGCCGGTGATAGTGTGGGAA+TGG - chr3.3:80540082-80540101 MS.gene049217:intron 60.0%
! CTTTTGCAGGCTGTCGCCAC+AGG - chr3.3:80536371-80536390 MS.gene049217:CDS 60.0%
! GCCATCGCCGGTGATAGTGT+GGG - chr3.3:80540077-80540096 MS.gene049217:intron 60.0%
! TCTCCCACATGCTGGTGCCA+TGG - chr3.3:80539693-80539712 MS.gene049217:intron 60.0%
! TGCCATCGCCGGTGATAGTG+TGG - chr3.3:80540076-80540095 MS.gene049217:intron 60.0%
!! CTGCTCTGGAGCTCATGTGG+AGG - chr3.3:80536422-80536441 MS.gene049217:CDS 60.0%
TGGGGCCGTGTTCCTGCTCT+AGG - chr3.3:80539622-80539641 MS.gene049217:intron 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 80534871 80540239 80534871 ID=MS.gene049217
chr3.3 mRNA 80534871 80540239 80534871 ID=MS.gene049217.t1;Parent=MS.gene049217
chr3.3 exon 80540142 80540239 80540142 ID=MS.gene049217.t1.exon1;Parent=MS.gene049217.t1
chr3.3 CDS 80540142 80540239 80540142 ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3 exon 80538403 80538730 80538403 ID=MS.gene049217.t1.exon2;Parent=MS.gene049217.t1
chr3.3 CDS 80538403 80538730 80538403 ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3 exon 80537941 80538084 80537941 ID=MS.gene049217.t1.exon3;Parent=MS.gene049217.t1
chr3.3 CDS 80537941 80538084 80537941 ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3 exon 80536888 80536989 80536888 ID=MS.gene049217.t1.exon4;Parent=MS.gene049217.t1
chr3.3 CDS 80536888 80536989 80536888 ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3 exon 80536534 80536637 80536534 ID=MS.gene049217.t1.exon5;Parent=MS.gene049217.t1
chr3.3 CDS 80536534 80536637 80536534 ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3 exon 80536316 80536442 80536316 ID=MS.gene049217.t1.exon6;Parent=MS.gene049217.t1
chr3.3 CDS 80536316 80536442 80536316 ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3 exon 80535939 80536091 80535939 ID=MS.gene049217.t1.exon7;Parent=MS.gene049217.t1
chr3.3 CDS 80535939 80536091 80535939 ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3 exon 80535685 80535785 80535685 ID=MS.gene049217.t1.exon8;Parent=MS.gene049217.t1
chr3.3 CDS 80535685 80535785 80535685 ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3 exon 80535369 80535570 80535369 ID=MS.gene049217.t1.exon9;Parent=MS.gene049217.t1
chr3.3 CDS 80535369 80535570 80535369 ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3 exon 80534871 80535098 80534871 ID=MS.gene049217.t1.exon10;Parent=MS.gene049217.t1
chr3.3 CDS 80534871 80535098 80534871 ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
Gene Sequence

>MS.gene049217

ATGAAGCTTCAAACTCCAACTCATGCCACGTTATCACCTTCTACTTCTTCCGCCTCCTATACACTCAACAACGCTTCTCCTAATTTCAAGCGTCCTCCGTAAGTCTTCCATTTACAATGTGACTCTCATGTGTTTATAACATTAATTTTTTATCGTTATGTATATGTTATTTTTGTAACGAAGTTAAATTGTCTTCATATAACAAAAATAAGAGTGTATGGCCATGTTATAAGCTGTTTTCTCACTAGTTTTTAGCTTGGTTGGTAAGCTCTCAACTAAGCTAATCCAAACTTGGTCCTTAATCTTTTTGGAATCCAACATGTTCTATTTCTTCCCTAGAAGGGATTCATAACATGGCAATTAAAACAAGATTAATTTTACAATTCAACTTACATTGTATCGTAAGTTTTCCTTCGGAAATGTCCTTAGAATCAAGTACTCTTTGTTCTATGTCAAGTCTACTGTTAGGATTATTGAATAAATGGAAATTAGAGTAGTTAAACTAGTTAAGAATTGTTATAAAAATTAGTTGGTTAGTTTGTTATGTGGCTGTTCAGCTGTTTAGTTTGTTATGTGTCTGTTCTGTTAAGCCTATAAGCAAGTCTTTAAATAGCGCCTTCATTTGATAGAGGGGAGTATATCTTTTGAATGTTGTGAAATTTGTGAATAAGAGTAACAACAACTCTATTGCCGAGGGGAAATCCTTGGAAGAGAGATTGTCTCGTACTTAATCATATTTCTTAGATAAAGTGCTCTTTCTTTCTTTGGAATTCAATTGTTGGGCTCCTAACCTCTACCTGTGTTGTATTGTGACCATAAACTTAACATTTTGATCTATGAGGTCCATTACCAGTAACAACTACCGATGATTATGAAGTTACTTTTTGGTTAATGTAAAATTGTAAGTTAATCAGATTAGGATACAATACTGAGTATGGTTCTAATACTTTTTCCGTGCTCTATAAAGATCCAATGTATAGCTTCTTTTGGAGGATGAATAAATAATCATTTTCCGGTTTCTTTTCACACATTTAGAATTCTCTGATATTTCAGAGCTCTGTTACACAACTCAGCAATGGATAGGAATTCACCGTTTCTCATTATAACAACACATTGAAGTTCAAAAATATTCAAGCACTAATTTACCGGTTCAAATCCATCTCAAGAAAAAAAATCCATCTCAAGATCCTGCTAGACTGCTCGTCAAAACATACGATACGATATCTGCTAACCCCTTTTCTCTAAACATACGAAGCATCTTGACATTGATTGTATTTTGTTCGTGAAAAATCTCCTTACCGCTGTCATCCTAGGCGATCAACTTTCTGTCTTCTAAACTTCAATTTGATGCAATGATATAACACATTCATTTATTGCTCAAAACATTTTAAACTCTCGCTGAAAGTTATACTTCAACTTTTCCTCATGCATTTTTTATGCCACATTTTATCACTAATTATCAAGGATAGCAAAAAACTTTTGAAGCTTATATTATATTTACTTTTGCAGGCTGTCGCCACAGGCAATCTGTACCTCTCAGAAAAAGTCCTTCTGCTCTGGAGCTCATGTGGAGGCTTCTGTTAACAATAATCCTGTGAAAAATTACATAGCAGCCAGTTTTTCTTCACTGCGATCTGAAGCAAAACCCTTGGTTTCCAACCAATCACTCAAAAAGCACATGTTTTCAGTGGGAGCTTTAGTAGCTCGAACAGATCAGGATGTTTCTGATGCAACTCTTACATCGGATGATAAGATTGGAGTGTTATTGCTAAACCTTGGAGGTCCAGAGACTCTAGAAGATGTGCAACCTTTTTTATTTAACCTTTTTGCAGACCCGGTAATACTCTAGCTTTTACATACTCTACATTTGAACTGTATTTTTTACAGTGTTGTCAAATAGTGGCGCTATAGTGCTATAGTGTATTGAAATATTAAAAAATTGCTATTATTTATGCGTAAGATGATTTAGTACAAACTGTTACCAAATAGCAGCTATAGCATTGTAGCATAGCAGAATTTGAACAAGCTTCTATTTTACATAATATGCGATTGACAACACTGCTTTTTTATCCCGCTATTCCTTTAGGTCGTGATGAACCTAAGATTGTCATTTTTGCTGTTTGATATCAGTTGTATTTTATGTCCAATCTCACAGGATATTATACGATTGCCAAGAATATTTAGTTTTCTTCAAAAGCCATTGGCCCAGTTTGTATCTGTTCTAAGGGCCCCAAAGAGCAGAGAAGGCTACGCTTCAATTGGTGGTGGTTCTCCTCTTAGACGTATAACTGATGCACAGGCATGCCACTTCCTGTTATTTATTTATTTTCCTTTTGATTATGACTTATATTTCTCTCTCAGATGATTACAATACTTCAAGTTTCAATATTCAGAAAATGAACTAATCATGTTTGAGTAGGAGTTGTTCCAGGCTTTGTTATTCTATAGTCTCTATATGCACTTGATGCATGAAATTTGTCTTTGCGACTTTTGTCAGCTTCAGATTTTGCAAAGTGAAAGAATAGCACAATGATATGGCGGAAATTTATATAACTCTATCAAATAGTAGCATTATGTGTATTTTGATTCATCCAGCAATAGTAGTTAGAACCACTTTTATGCAGTAACTGTTGAGGAGAAATATTTGTTGGAACCAAAATCAATCATGTTAATAATCAGAATAATATGTGGAGGCGTACTTGAATTCATGATGAACAAATATTTGGTGGTTTGGCCTTCCAGATCAACACACATTCTCTCTGAAAGAACCCTTAATTACTTCTCTATCTTCTTCTGATATAGGTAGTCAGAAAATAACAGCTGCAAGCACGCGTGATCTGGAGACCATAACTTCTCTCTATATATAGAACCCTGGCCCACACCCTATTAGATACTTATAAGCCCATATTAACCAAACCTTTTTAGATCACTTTTAATTGGACTTCAACTTAAGTGGCAGTCTACAATACATGATTTTTAAAATACAAGTCCAATGTTGGATTGATGATCCAACAATATTTACTCCGAAAGCAATTTAATTTTACCGCTTCTTGCATTTTTATATTGTTACCTCATCCTTACTCTTTCCAATCATTTCAATCAAGCTTTCGGAATTTTTCGCTAATCCAATGAGATTCTACTATTGACTTATATTTTTTTATTTATGTTTTTAAGAGTTTTCTAGCACTATGATTCATACCTCATTCATTCTATTATTACCTTTGCTCTTCTAATGATCTCCTCTGCACAGGCTGAAGACTTGAAGAAATCTCTTTCGGAAAAGAATGTCCCTGCTGAAGTGTACGTTGGCATGCGTTACTGGCATCCATTCACTGAGGAAGCTATTGAACAGGTACTTGATGATCTCATTCTTAGTTCATAATGTAAAAACTCTGATAGAATTTGATAAAGATTATGCCACCAGGGATTCTCCTACCTGCTATCGCTCTACAATACGAGTTAAAAAATGTCACTGCATGCTTTGTAATCTAAAATAAAGGTAGCAAAATATTTATAAATAATCAAAGAAATCAAGAATACTGACCTGATCACATTGTTGAAACCTGATTATAATTATTTTCCTATTGAAACATATTGTGTAGATTAAAAAGGATGGAGTTACAAAGCTGGTCGTTCTCCCACTTTATCCACAATTTTCAATATCAACCAGTGGCTCAAGCTTACGTCTACTGGAGAGTATATTCCGGTGATTACTTTTATTACCCACGTTAAATATTCTTCAAATATATAAGTATCAAACTTCATGTTATGATTTGAATTATGAATTGGTCCTTCAGAGAGGATGAGTATCTAGTCAACATGCAGCACACAGTATTACCTTCATGGTATCAACGTGAAGGATACATAAAGGCCATGTCAAATTTAATTGAAAAAGAACTGAAGAGTTTTGACTGCCCTAAAGAGGTAGTGTACTTTTTACCTTATGTAGTTTCAACGACTTCATGGAAACTGTGAAATGCCAATTTATGCCCAAAAAAAAAATGTGTTGTTTTTGTTGAGATTCATGTGATAACAATTTTGGTTATTCCTGTTTCTCTTTGTTAGGGATTGCTAAGAAGTAGCTCTCAAATTGAGTTGCATTTTTCATTGCTGGCTGTGTGTGCTTTAATTCCAAGTAATTTGTGCAGGTCATGATATTTTTTAGTGCACATGGGGTGCCTCTTGCTTATGTGGAAGAGGCCGGTGATCCTTACAAGGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAGCTTGAGACAAGAAAGATAAGAAATCCCTTCACCCTTGCCTATCAGGTAATTTTTTTTTTCTGCTTTTGATTCTGCTGTTGTTTCGTTTTCTATAACTTTTTTATCTTTAGATGTTATTCATTATGCAATAATTTCTGAACAGTTCATGAAGTTTTCTTGGTTTCTAGTAATTGACTATAATAATAATTCTTCTTACAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGAGACAATAGTTGAACTTGGAAAAAAAGGAGTGAAAAGTATGTTGGCTGTTCCAATTAGGTAAATACATTAGTTTACTCGTGTCACAATTTCTTTTGTTATCTTTCTCGCCCTTTTTCTTAGACCTGACTAGTATTTTGTTTTGTTAACTCGTGCGGCTTTATTCACTTGCAGCTTTGTCAGTGAACATATTGAAACTCTAGAAGAAATTGATGTTGAATACAAAGAATTGGCTCTAGAATCTGGTATAGAAAATTGGGGCCGTGTTCCTGCTCTAGGATGTGAACCCTCCTTCATTTCTGATTTGGCAGATGCTGTTATTGAAAGTCTCCCACATGCTGGTGCCATGGCAGTTTCAAGCCTCGAAGCTCGACAGGTATTCTTTTCAATTAGATATAGTCGGTTTAATAACTTTTTAGTCTCTGTAATATGCATCTTCTTTGTTTTTAGTCTCAAAAGATCGGCGTTTTCAATCCATGAAACATATGAATATGATATAATACTTTTTGTCCTTGTTTTAGTTTTAGTCTTGTAGTATTTGATCTATTTTGGAATTAATCTTTCTAATATGGGGAACATGTATGTTTAAATCTCTGGAATCTGGCATCTTGTGATGATCTAATTGAAAGTATATTATCTTTGGCAGTCTTTGGTTCCGCTCGGAAGTGTACAAGAGTTATTGGCAGCATATGACTCGCAAAATAGGGAGTTGCCATCGCCGGTGATAGTGTGGGAATGGGGTTTGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGTTAGCTGTGCTGCTTCTTTTGTTTTTTGAAGTCACGACACCTGATAGTGTTTTTCACCAATGGGGAATATTATCGCCCTCTCTTAGGTGA

Protein sequence

>MS.gene049217.t1

MKLQTPTHATLSPSTSSASYTLNNASPNFKRPPLSPQAICTSQKKSFCSGAHVEASVNNNPVKNYIAASFSSLRSEAKPLVSNQSLKKHMFSVGALVARTDQDVSDATLTSDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRIFSFLQKPLAQFVSVLRAPKSREGYASIGGGSPLRRITDAQAEDLKKSLSEKNVPAEVYVGMRYWHPFTEEAIEQIKKDGVTKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVLPSWYQREGYIKAMSNLIEKELKSFDCPKEVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELETRKIRNPFTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSMLAVPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPSFISDLADAVIESLPHAGAMAVSSLEARQSLVPLGSVQELLAAYDSQNRELPSPVIVWEWGLTKSAETWNGRAAMLAVLLLLFFEVTTPDSVFHQWGILSPSLR