AlfalfaGEDB | MS.gene049217

M. sativa cultivar XinJiangDaYe / MS.gene049217

KEGG: K01772
GO: GO:0003674 GO:0003824 GO:0004325 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009987 GO:0016829 GO:0018130 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0044237 GO:0044249 GO:0044271 GO:0046148 GO:0046483 GO:0051186 GO:0051188 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
PFAM: PF00762.22

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049217.t1	XP_013461618.1	97.5	528	13	0	1	528	1	528	9.70E-293	1015.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049217.t1	Q0DIV0	81.2	441	81	1	85	523	82	522	9.1e-207	721.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049217.t1	A0A072V2Q7	97.5	528	13	0	1	528	1	528	7.0e-293	1015.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene049217	0.871288	7.66E-67	-1.69E-46
MS.gene049171	MS.gene049217	0.896904	2.36E-76	-1.69E-46
MS.gene049173	MS.gene049217	0.862994	3.42E-64	-1.69E-46
MS.gene049217	MS.gene049222	0.914088	2.89E-84	-1.69E-46
MS.gene049217	MS.gene049232	0.865324	6.41E-65	-1.69E-46
MS.gene049217	MS.gene049285	0.919701	3.24E-87	-1.69E-46
MS.gene049217	MS.gene049320	0.908098	2.48E-81	-1.69E-46
MS.gene049217	MS.gene04939	0.848259	6.87E-60	-1.69E-46
MS.gene049217	MS.gene049425	-0.828012	1.14E-54	-1.69E-46
MS.gene049217	MS.gene049427	0.846337	2.31E-59	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene049217.t1	MTR_3g097290	97.538	528	13	0	1	528	1	528	0.0	1051
MS.gene049217.t1	MTR_8g095320	82.979	517	83	1	12	523	7	523	0.0	872
MS.gene049217.t1	MTR_3g097290	96.316	380	14	0	1	380	1	380	0.0	756
MS.gene049217.t1	MTR_3g104260	73.021	341	92	0	104	444	85	425	0.0	518
MS.gene049217.t1	MTR_4g019850	72.434	341	94	0	104	444	88	428	1.03e-180	516
MS.gene049217.t1	MTR_4g019850	64.232	397	136	2	48	444	49	439	1.84e-180	516
MS.gene049217.t1	MTR_3g104260	70.352	199	59	0	104	302	85	283	1.22e-92	286
MS.gene049217.t1	MTR_4g087690	88.235	68	8	0	407	474	5	72	7.36e-34	124
MS.gene049217.t1	MTR_7g056307	65.217	46	16	0	393	438	88	133	9.25e-12	63.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene049217.t1	AT2G30390	79.476	458	81	3	82	527	56	512	719
MS.gene049217.t1	AT2G30390	77.778	468	81	4	82	527	56	522	711
MS.gene049217.t1	AT5G26030	72.700	337	92	0	109	445	84	420	536
MS.gene049217.t1	AT5G26030	72.700	337	92	0	109	445	84	420	536

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Find 118 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGTGAAAAGTATGT+TGG	0.492369	3.3:-80535698	MS.gene049217:CDS
AAAAGTACACTACCTCTTTA+GGG	0.385426	3.3:+80536303	None:intergenic
AAAAGTGCTGAAACTTGGAA+TGG	0.570829	3.3:-80534974	MS.gene049217:CDS
AAAGAATTGGCTCTAGAATC+TGG	0.400419	3.3:-80535499	MS.gene049217:CDS
AAAGGATGGAGTTACAAAGC+TGG	0.574958	3.3:-80536610	MS.gene049217:CDS
AAATAGGGAGTTGCCATCGC+CGG	0.581354	3.3:-80535023	MS.gene049217:CDS
AACTAATGTATTTACCTAAT+TGG	0.166560	3.3:+80535670	None:intergenic
AACTATTGTCTCATCTGTAT+AGG	0.332380	3.3:+80535732	None:intergenic
AACTCTTGTACACTTCCGAG+CGG	0.698633	3.3:+80535067	None:intergenic
ACAGAGTAGAGTTGGACCTG+TGG	0.670362	3.3:-80535767	MS.gene049217:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATTACCTGATAGGCA+AGG	+	chr3.3:80539162-80539181	None:intergenic	30.0%
AAAAATTACCTGATAGGCAA+GGG	+	chr3.3:80539161-80539180	None:intergenic	30.0%
AAAAGATTAAGGACCAAGTT+TGG	+	chr3.3:80535159-80535178	None:intergenic	30.0%
AACTATTGTCTCATCTGTAT+AGG	+	chr3.3:80539359-80539378	None:intergenic	30.0%
ACAGCAAAAATGACAATCTT+AGG	+	chr3.3:80536971-80536990	None:intergenic	30.0%
ACTATTGTCTCATCTGTATA+GGG	+	chr3.3:80539358-80539377	None:intergenic	30.0%
AGACTTGAAGAAATCTCTTT+CGG	-	chr3.3:80538126-80538145	MS.gene049217:intron	30.0%
AGTCAATAGTAGAATCTCAT+TGG	+	chr3.3:80537999-80538018	None:intergenic	30.0%
ATAAGTATCTAATAGGGTGT+GGG	+	chr3.3:80537749-80537768	None:intergenic	30.0%
ATATTATCTTTGGCAGTCTT+TGG	-	chr3.3:80539996-80540015	MS.gene049217:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	80534871	80540239	80534871	ID=MS.gene049217
chr3.3	mRNA	80534871	80540239	80534871	ID=MS.gene049217.t1;Parent=MS.gene049217
chr3.3	exon	80540142	80540239	80540142	ID=MS.gene049217.t1.exon1;Parent=MS.gene049217.t1
chr3.3	CDS	80540142	80540239	80540142	ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3	exon	80538403	80538730	80538403	ID=MS.gene049217.t1.exon2;Parent=MS.gene049217.t1
chr3.3	CDS	80538403	80538730	80538403	ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3	exon	80537941	80538084	80537941	ID=MS.gene049217.t1.exon3;Parent=MS.gene049217.t1
chr3.3	CDS	80537941	80538084	80537941	ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3	exon	80536888	80536989	80536888	ID=MS.gene049217.t1.exon4;Parent=MS.gene049217.t1
chr3.3	CDS	80536888	80536989	80536888	ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3	exon	80536534	80536637	80536534	ID=MS.gene049217.t1.exon5;Parent=MS.gene049217.t1
chr3.3	CDS	80536534	80536637	80536534	ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3	exon	80536316	80536442	80536316	ID=MS.gene049217.t1.exon6;Parent=MS.gene049217.t1
chr3.3	CDS	80536316	80536442	80536316	ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3	exon	80535939	80536091	80535939	ID=MS.gene049217.t1.exon7;Parent=MS.gene049217.t1
chr3.3	CDS	80535939	80536091	80535939	ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3	exon	80535685	80535785	80535685	ID=MS.gene049217.t1.exon8;Parent=MS.gene049217.t1
chr3.3	CDS	80535685	80535785	80535685	ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3	exon	80535369	80535570	80535369	ID=MS.gene049217.t1.exon9;Parent=MS.gene049217.t1
chr3.3	CDS	80535369	80535570	80535369	ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1
chr3.3	exon	80534871	80535098	80534871	ID=MS.gene049217.t1.exon10;Parent=MS.gene049217.t1
chr3.3	CDS	80534871	80535098	80534871	ID=cds.MS.gene049217.t1;Parent=MS.gene049217.t1

Gene Sequence

>MS.gene049217

ATGAAGCTTCAAACTCCAACTCATGCCACGTTATCACCTTCTACTTCTTCCGCCTCCTATACACTCAACAACGCTTCTCCTAATTTCAAGCGTCCTCCGTAAGTCTTCCATTTACAATGTGACTCTCATGTGTTTATAACATTAATTTTTTATCGTTATGTATATGTTATTTTTGTAACGAAGTTAAATTGTCTTCATATAACAAAAATAAGAGTGTATGGCCATGTTATAAGCTGTTTTCTCACTAGTTTTTAGCTTGGTTGGTAAGCTCTCAACTAAGCTAATCCAAACTTGGTCCTTAATCTTTTTGGAATCCAACATGTTCTATTTCTTCCCTAGAAGGGATTCATAACATGGCAATTAAAACAAGATTAATTTTACAATTCAACTTACATTGTATCGTAAGTTTTCCTTCGGAAATGTCCTTAGAATCAAGTACTCTTTGTTCTATGTCAAGTCTACTGTTAGGATTATTGAATAAATGGAAATTAGAGTAGTTAAACTAGTTAAGAATTGTTATAAAAATTAGTTGGTTAGTTTGTTATGTGGCTGTTCAGCTGTTTAGTTTGTTATGTGTCTGTTCTGTTAAGCCTATAAGCAAGTCTTTAAATAGCGCCTTCATTTGATAGAGGGGAGTATATCTTTTGAATGTTGTGAAATTTGTGAATAAGAGTAACAACAACTCTATTGCCGAGGGGAAATCCTTGGAAGAGAGATTGTCTCGTACTTAATCATATTTCTTAGATAAAGTGCTCTTTCTTTCTTTGGAATTCAATTGTTGGGCTCCTAACCTCTACCTGTGTTGTATTGTGACCATAAACTTAACATTTTGATCTATGAGGTCCATTACCAGTAACAACTACCGATGATTATGAAGTTACTTTTTGGTTAATGTAAAATTGTAAGTTAATCAGATTAGGATACAATACTGAGTATGGTTCTAATACTTTTTCCGTGCTCTATAAAGATCCAATGTATAGCTTCTTTTGGAGGATGAATAAATAATCATTTTCCGGTTTCTTTTCACACATTTAGAATTCTCTGATATTTCAGAGCTCTGTTACACAACTCAGCAATGGATAGGAATTCACCGTTTCTCATTATAACAACACATTGAAGTTCAAAAATATTCAAGCACTAATTTACCGGTTCAAATCCATCTCAAGAAAAAAAATCCATCTCAAGATCCTGCTAGACTGCTCGTCAAAACATACGATACGATATCTGCTAACCCCTTTTCTCTAAACATACGAAGCATCTTGACATTGATTGTATTTTGTTCGTGAAAAATCTCCTTACCGCTGTCATCCTAGGCGATCAACTTTCTGTCTTCTAAACTTCAATTTGATGCAATGATATAACACATTCATTTATTGCTCAAAACATTTTAAACTCTCGCTGAAAGTTATACTTCAACTTTTCCTCATGCATTTTTTATGCCACATTTTATCACTAATTATCAAGGATAGCAAAAAACTTTTGAAGCTTATATTATATTTACTTTTGCAGGCTGTCGCCACAGGCAATCTGTACCTCTCAGAAAAAGTCCTTCTGCTCTGGAGCTCATGTGGAGGCTTCTGTTAACAATAATCCTGTGAAAAATTACATAGCAGCCAGTTTTTCTTCACTGCGATCTGAAGCAAAACCCTTGGTTTCCAACCAATCACTCAAAAAGCACATGTTTTCAGTGGGAGCTTTAGTAGCTCGAACAGATCAGGATGTTTCTGATGCAACTCTTACATCGGATGATAAGATTGGAGTGTTATTGCTAAACCTTGGAGGTCCAGAGACTCTAGAAGATGTGCAACCTTTTTTATTTAACCTTTTTGCAGACCCGGTAATACTCTAGCTTTTACATACTCTACATTTGAACTGTATTTTTTACAGTGTTGTCAAATAGTGGCGCTATAGTGCTATAGTGTATTGAAATATTAAAAAATTGCTATTATTTATGCGTAAGATGATTTAGTACAAACTGTTACCAAATAGCAGCTATAGCATTGTAGCATAGCAGAATTTGAACAAGCTTCTATTTTACATAATATGCGATTGACAACACTGCTTTTTTATCCCGCTATTCCTTTAGGTCGTGATGAACCTAAGATTGTCATTTTTGCTGTTTGATATCAGTTGTATTTTATGTCCAATCTCACAGGATATTATACGATTGCCAAGAATATTTAGTTTTCTTCAAAAGCCATTGGCCCAGTTTGTATCTGTTCTAAGGGCCCCAAAGAGCAGAGAAGGCTACGCTTCAATTGGTGGTGGTTCTCCTCTTAGACGTATAACTGATGCACAGGCATGCCACTTCCTGTTATTTATTTATTTTCCTTTTGATTATGACTTATATTTCTCTCTCAGATGATTACAATACTTCAAGTTTCAATATTCAGAAAATGAACTAATCATGTTTGAGTAGGAGTTGTTCCAGGCTTTGTTATTCTATAGTCTCTATATGCACTTGATGCATGAAATTTGTCTTTGCGACTTTTGTCAGCTTCAGATTTTGCAAAGTGAAAGAATAGCACAATGATATGGCGGAAATTTATATAACTCTATCAAATAGTAGCATTATGTGTATTTTGATTCATCCAGCAATAGTAGTTAGAACCACTTTTATGCAGTAACTGTTGAGGAGAAATATTTGTTGGAACCAAAATCAATCATGTTAATAATCAGAATAATATGTGGAGGCGTACTTGAATTCATGATGAACAAATATTTGGTGGTTTGGCCTTCCAGATCAACACACATTCTCTCTGAAAGAACCCTTAATTACTTCTCTATCTTCTTCTGATATAGGTAGTCAGAAAATAACAGCTGCAAGCACGCGTGATCTGGAGACCATAACTTCTCTCTATATATAGAACCCTGGCCCACACCCTATTAGATACTTATAAGCCCATATTAACCAAACCTTTTTAGATCACTTTTAATTGGACTTCAACTTAAGTGGCAGTCTACAATACATGATTTTTAAAATACAAGTCCAATGTTGGATTGATGATCCAACAATATTTACTCCGAAAGCAATTTAATTTTACCGCTTCTTGCATTTTTATATTGTTACCTCATCCTTACTCTTTCCAATCATTTCAATCAAGCTTTCGGAATTTTTCGCTAATCCAATGAGATTCTACTATTGACTTATATTTTTTTATTTATGTTTTTAAGAGTTTTCTAGCACTATGATTCATACCTCATTCATTCTATTATTACCTTTGCTCTTCTAATGATCTCCTCTGCACAGGCTGAAGACTTGAAGAAATCTCTTTCGGAAAAGAATGTCCCTGCTGAAGTGTACGTTGGCATGCGTTACTGGCATCCATTCACTGAGGAAGCTATTGAACAGGTACTTGATGATCTCATTCTTAGTTCATAATGTAAAAACTCTGATAGAATTTGATAAAGATTATGCCACCAGGGATTCTCCTACCTGCTATCGCTCTACAATACGAGTTAAAAAATGTCACTGCATGCTTTGTAATCTAAAATAAAGGTAGCAAAATATTTATAAATAATCAAAGAAATCAAGAATACTGACCTGATCACATTGTTGAAACCTGATTATAATTATTTTCCTATTGAAACATATTGTGTAGATTAAAAAGGATGGAGTTACAAAGCTGGTCGTTCTCCCACTTTATCCACAATTTTCAATATCAACCAGTGGCTCAAGCTTACGTCTACTGGAGAGTATATTCCGGTGATTACTTTTATTACCCACGTTAAATATTCTTCAAATATATAAGTATCAAACTTCATGTTATGATTTGAATTATGAATTGGTCCTTCAGAGAGGATGAGTATCTAGTCAACATGCAGCACACAGTATTACCTTCATGGTATCAACGTGAAGGATACATAAAGGCCATGTCAAATTTAATTGAAAAAGAACTGAAGAGTTTTGACTGCCCTAAAGAGGTAGTGTACTTTTTACCTTATGTAGTTTCAACGACTTCATGGAAACTGTGAAATGCCAATTTATGCCCAAAAAAAAAATGTGTTGTTTTTGTTGAGATTCATGTGATAACAATTTTGGTTATTCCTGTTTCTCTTTGTTAGGGATTGCTAAGAAGTAGCTCTCAAATTGAGTTGCATTTTTCATTGCTGGCTGTGTGTGCTTTAATTCCAAGTAATTTGTGCAGGTCATGATATTTTTTAGTGCACATGGGGTGCCTCTTGCTTATGTGGAAGAGGCCGGTGATCCTTACAAGGCAGAGATGGAGGAATGTGTGGATTTGATCATGGAAGAGCTTGAGACAAGAAAGATAAGAAATCCCTTCACCCTTGCCTATCAGGTAATTTTTTTTTTCTGCTTTTGATTCTGCTGTTGTTTCGTTTTCTATAACTTTTTTATCTTTAGATGTTATTCATTATGCAATAATTTCTGAACAGTTCATGAAGTTTTCTTGGTTTCTAGTAATTGACTATAATAATAATTCTTCTTACAGAGTAGAGTTGGACCTGTGGAATGGTTAAAACCCTATACAGATGAGACAATAGTTGAACTTGGAAAAAAAGGAGTGAAAAGTATGTTGGCTGTTCCAATTAGGTAAATACATTAGTTTACTCGTGTCACAATTTCTTTTGTTATCTTTCTCGCCCTTTTTCTTAGACCTGACTAGTATTTTGTTTTGTTAACTCGTGCGGCTTTATTCACTTGCAGCTTTGTCAGTGAACATATTGAAACTCTAGAAGAAATTGATGTTGAATACAAAGAATTGGCTCTAGAATCTGGTATAGAAAATTGGGGCCGTGTTCCTGCTCTAGGATGTGAACCCTCCTTCATTTCTGATTTGGCAGATGCTGTTATTGAAAGTCTCCCACATGCTGGTGCCATGGCAGTTTCAAGCCTCGAAGCTCGACAGGTATTCTTTTCAATTAGATATAGTCGGTTTAATAACTTTTTAGTCTCTGTAATATGCATCTTCTTTGTTTTTAGTCTCAAAAGATCGGCGTTTTCAATCCATGAAACATATGAATATGATATAATACTTTTTGTCCTTGTTTTAGTTTTAGTCTTGTAGTATTTGATCTATTTTGGAATTAATCTTTCTAATATGGGGAACATGTATGTTTAAATCTCTGGAATCTGGCATCTTGTGATGATCTAATTGAAAGTATATTATCTTTGGCAGTCTTTGGTTCCGCTCGGAAGTGTACAAGAGTTATTGGCAGCATATGACTCGCAAAATAGGGAGTTGCCATCGCCGGTGATAGTGTGGGAATGGGGTTTGACAAAAAGTGCTGAAACTTGGAATGGAAGAGCAGCTATGTTAGCTGTGCTGCTTCTTTTGTTTTTTGAAGTCACGACACCTGATAGTGTTTTTCACCAATGGGGAATATTATCGCCCTCTCTTAGGTGA

Protein sequence

>MS.gene049217.t1

MKLQTPTHATLSPSTSSASYTLNNASPNFKRPPLSPQAICTSQKKSFCSGAHVEASVNNNPVKNYIAASFSSLRSEAKPLVSNQSLKKHMFSVGALVARTDQDVSDATLTSDDKIGVLLLNLGGPETLEDVQPFLFNLFADPDIIRLPRIFSFLQKPLAQFVSVLRAPKSREGYASIGGGSPLRRITDAQAEDLKKSLSEKNVPAEVYVGMRYWHPFTEEAIEQIKKDGVTKLVVLPLYPQFSISTSGSSLRLLESIFREDEYLVNMQHTVLPSWYQREGYIKAMSNLIEKELKSFDCPKEVMIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELETRKIRNPFTLAYQSRVGPVEWLKPYTDETIVELGKKGVKSMLAVPISFVSEHIETLEEIDVEYKELALESGIENWGRVPALGCEPSFISDLADAVIESLPHAGAMAVSSLEARQSLVPLGSVQELLAAYDSQNRELPSPVIVWEWGLTKSAETWNGRAAMLAVLLLLFFEVTTPDSVFHQWGILSPSLR