Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39007.t1 | XP_003624978.2 | 94.8 | 329 | 16 | 1 | 1 | 328 | 66 | 394 | 1.10E-190 | 675.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39007.t1 | Q6NLB1 | 58.8 | 313 | 124 | 2 | 21 | 328 | 59 | 371 | 1.0e-115 | 417.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39007.t1 | Q2HSY4 | 94.8 | 329 | 16 | 1 | 1 | 328 | 66 | 394 | 8.2e-191 | 675.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene39007 | 0.802894 | 4.52E-49 | -1.69E-46 |
| MS.gene054833 | MS.gene39007 | 0.844397 | 7.76E-59 | -1.69E-46 |
| MS.gene055356 | MS.gene39007 | 0.805373 | 1.38E-49 | -1.69E-46 |
| MS.gene055357 | MS.gene39007 | 0.801001 | 1.11E-48 | -1.69E-46 |
| MS.gene055358 | MS.gene39007 | 0.811979 | 5.34E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene39007 | 0.819483 | 1.13E-52 | -1.69E-46 |
| MS.gene059128 | MS.gene39007 | 0.821812 | 3.31E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39007.t1 | MTR_7g089640 | 94.833 | 329 | 16 | 1 | 1 | 328 | 66 | 394 | 0.0 | 624 |
| MS.gene39007.t1 | MTR_5g089110 | 56.140 | 342 | 135 | 4 | 1 | 328 | 59 | 399 | 3.47e-141 | 405 |
| MS.gene39007.t1 | MTR_3g436860 | 57.738 | 336 | 133 | 4 | 1 | 328 | 1 | 335 | 1.26e-139 | 399 |
| MS.gene39007.t1 | MTR_5g089110 | 54.930 | 284 | 113 | 4 | 1 | 270 | 59 | 341 | 4.03e-109 | 322 |
| MS.gene39007.t1 | MTR_3g436860 | 56.475 | 278 | 112 | 4 | 1 | 270 | 66 | 342 | 8.50e-106 | 314 |
| MS.gene39007.t1 | MTR_7g089730 | 47.078 | 308 | 145 | 7 | 23 | 321 | 11 | 309 | 1.10e-86 | 263 |
| MS.gene39007.t1 | MTR_7g089670 | 43.831 | 308 | 160 | 5 | 17 | 321 | 9 | 306 | 1.12e-85 | 261 |
| MS.gene39007.t1 | MTR_7g089700 | 38.973 | 331 | 182 | 10 | 1 | 326 | 2 | 317 | 4.67e-63 | 203 |
| MS.gene39007.t1 | MTR_7g089720 | 37.764 | 331 | 186 | 10 | 1 | 326 | 1 | 316 | 8.93e-62 | 199 |
| MS.gene39007.t1 | MTR_6g039460 | 38.658 | 313 | 172 | 7 | 21 | 326 | 18 | 317 | 5.06e-58 | 190 |
| MS.gene39007.t1 | MTR_7g089560 | 83.117 | 77 | 12 | 1 | 1 | 76 | 54 | 130 | 1.48e-26 | 102 |
| MS.gene39007.t1 | MTR_1030s0010 | 38.095 | 126 | 66 | 3 | 35 | 154 | 2 | 121 | 8.03e-19 | 81.3 |
| MS.gene39007.t1 | MTR_6g039470 | 42.529 | 87 | 49 | 1 | 21 | 106 | 90 | 176 | 2.50e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39007.t1 | AT2G26850 | 58.786 | 313 | 124 | 2 | 21 | 328 | 59 | 371 | 1.80e-141 | 405 |
| MS.gene39007.t1 | AT2G32560 | 57.460 | 315 | 127 | 3 | 20 | 328 | 58 | 371 | 8.11e-136 | 390 |
| MS.gene39007.t1 | AT2G41170 | 52.469 | 324 | 140 | 4 | 16 | 328 | 51 | 371 | 6.26e-114 | 335 |
| MS.gene39007.t1 | AT2G41170 | 47.619 | 357 | 140 | 5 | 16 | 328 | 51 | 404 | 4.66e-107 | 318 |
| MS.gene39007.t1 | AT2G32560 | 56.574 | 251 | 103 | 2 | 20 | 264 | 58 | 308 | 5.32e-105 | 310 |
| MS.gene39007.t1 | AT2G26850 | 57.709 | 227 | 89 | 3 | 21 | 241 | 59 | 284 | 1.72e-91 | 275 |
| MS.gene39007.t1 | AT2G41170 | 53.361 | 238 | 98 | 3 | 16 | 242 | 51 | 286 | 3.23e-76 | 236 |
Find 57 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTGAGGAAAACATAAAA+TGG | 0.213796 | 7.4:-19119813 | MS.gene39007:CDS |
| ACAATACTTGCTTTCCTTCA+TGG | 0.246700 | 7.4:-19120602 | MS.gene39007:CDS |
| TGAATTCTTCTCTATGCTTT+TGG | 0.274166 | 7.4:+19120646 | None:intergenic |
| GATGTAGAAGTGATTATTTA+TGG | 0.288645 | 7.4:-19120745 | MS.gene39007:CDS |
| GGTGACAGATCCAGTGATTT+TGG | 0.292587 | 7.4:-19119206 | MS.gene39007:intron |
| CACAAGTGTGCAAATCTCTT+AGG | 0.319042 | 7.4:-19120772 | MS.gene39007:CDS |
| GCAATTACAAAACAAGAGTT+TGG | 0.359351 | 7.4:-19120912 | MS.gene39007:CDS |
| GTATAGTGTCATTGGTCATT+TGG | 0.367045 | 7.4:-19119374 | MS.gene39007:CDS |
| CTTTATCTTTCTCTTGAGAA+TGG | 0.369439 | 7.4:-19120503 | MS.gene39007:CDS |
| CATTGCCAATGTCACAATAA+AGG | 0.376211 | 7.4:-19119328 | MS.gene39007:intron |
| GAACAAGGAAATGAAATAGA+AGG | 0.401759 | 7.4:-19119118 | MS.gene39007:CDS |
| ATGTAGAAGTGATTATTTAT+GGG | 0.401802 | 7.4:-19120744 | MS.gene39007:CDS |
| TTACCTCACGGTTATAAACT+TGG | 0.402760 | 7.4:+19120462 | None:intergenic |
| AGAAACAATGAGTTCCCTTA+TGG | 0.417625 | 7.4:-19119685 | MS.gene39007:intron |
| GGAAGAGAAAGCTTCTCTCT+TGG | 0.428109 | 7.4:-19120861 | MS.gene39007:CDS |
| AGAAACATATGAAGATGAAA+TGG | 0.438111 | 7.4:-19120721 | MS.gene39007:CDS |
| TGCTTAGATGACTTAAAGCC+TGG | 0.448701 | 7.4:-19119733 | MS.gene39007:CDS |
| TTACAAAGTGGAAGAAACTT+TGG | 0.456123 | 7.4:-19119054 | MS.gene39007:CDS |
| GAAACATATGAAGATGAAAT+GGG | 0.469405 | 7.4:-19120720 | MS.gene39007:CDS |
| TTTGATTTAATCCAAAAGAA+AGG | 0.469457 | 7.4:+19120572 | None:intergenic |
| GGTTGGTGGTATAGTGTCAT+TGG | 0.469917 | 7.4:-19119382 | MS.gene39007:CDS |
| AGAGCAGCAATTGAGTCATC+TGG | 0.473004 | 7.4:+19120524 | None:intergenic |
| TCTTACCTTTATTGTGACAT+TGG | 0.477470 | 7.4:+19119323 | None:intergenic |
| AACTGAGGAAAACATAAAAT+GGG | 0.478038 | 7.4:-19119812 | MS.gene39007:CDS |
| TGAATTTCAACATGATCTCC+AGG | 0.484749 | 7.4:+19119715 | None:intergenic |
| ACAAGTGTGCAAATCTCTTA+GGG | 0.485793 | 7.4:-19120771 | MS.gene39007:CDS |
| ACATGTGAAGAAGAGTCAAT+AGG | 0.486449 | 7.4:+19119772 | None:intergenic |
| TTGCACATACCTTGCTTGAA+AGG | 0.487955 | 7.4:+19120231 | None:intergenic |
| TCACGGTTATAAACTTGGGC+AGG | 0.488493 | 7.4:+19120467 | None:intergenic |
| CTTTATTGTGACATTGGCAA+TGG | 0.507841 | 7.4:+19119329 | None:intergenic |
| GGATTTGCATGATTTACCAT+TGG | 0.508970 | 7.4:-19120840 | MS.gene39007:CDS |
| TTGGAAACATGTCAAAGTGA+TGG | 0.513312 | 7.4:-19119355 | MS.gene39007:CDS |
| TGTGTGAACTCCAAAATCAC+TGG | 0.525464 | 7.4:+19119196 | None:intergenic |
| GGTACTCTCCTCATGGAAGA+TGG | 0.530560 | 7.4:-19119837 | MS.gene39007:CDS |
| TGGAAACATGTCAAAGTGAT+GGG | 0.532140 | 7.4:-19119354 | MS.gene39007:CDS |
| TACCTCACGGTTATAAACTT+GGG | 0.540506 | 7.4:+19120463 | None:intergenic |
| GTGATTCTGCTTATAGACAA+TGG | 0.546392 | 7.4:-19120685 | MS.gene39007:CDS |
| GAGTTCACACAATACACAGC+TGG | 0.557018 | 7.4:-19119184 | MS.gene39007:CDS |
| TATGATGAGACATACCATAA+GGG | 0.562365 | 7.4:+19119671 | None:intergenic |
| TCTGACAGGTACTCTCCTCA+TGG | 0.562956 | 7.4:-19119844 | MS.gene39007:intron |
| AATACACAGCTGGCTCAAGA+TGG | 0.566869 | 7.4:-19119174 | MS.gene39007:CDS |
| GAGATCATGTTGAAATTCAG+TGG | 0.569671 | 7.4:-19119711 | MS.gene39007:CDS |
| TTGGCATCAAAATTTGAGCA+TGG | 0.572122 | 7.4:-19120893 | MS.gene39007:CDS |
| AGGAAAACATAAAATGGGAA+AGG | 0.579315 | 7.4:-19119807 | MS.gene39007:CDS |
| AGAAAGGAAGAAAACCATGA+AGG | 0.585722 | 7.4:+19120588 | None:intergenic |
| CACGGTTATAAACTTGGGCA+GGG | 0.616974 | 7.4:+19120468 | None:intergenic |
| GAACAGATACCTTTCAAGCA+AGG | 0.623387 | 7.4:-19120240 | MS.gene39007:intron |
| GCCACATTGCATAATTCACT+AGG | 0.626475 | 7.4:+19120794 | None:intergenic |
| AATCAGAAAGTTGCATAGCA+AGG | 0.645692 | 7.4:-19119083 | MS.gene39007:CDS |
| ACCTAGTGAATTATGCAATG+TGG | 0.656414 | 7.4:-19120795 | MS.gene39007:CDS |
| AAACATATGAAGATGAAATG+GGG | 0.657925 | 7.4:-19120719 | MS.gene39007:CDS |
| CAGAAAGTTGCATAGCAAGG+AGG | 0.668496 | 7.4:-19119080 | MS.gene39007:CDS |
| TCAGTTGTCCATCTTCCATG+AGG | 0.673134 | 7.4:+19119829 | None:intergenic |
| GCAAGGAGGAGATTACAAAG+TGG | 0.681205 | 7.4:-19119066 | MS.gene39007:CDS |
| TCATGGAAGATGGACAACTG+AGG | 0.685364 | 7.4:-19119827 | MS.gene39007:CDS |
| TGTGAAGAAGAGTCAATAGG+TGG | 0.697492 | 7.4:+19119775 | None:intergenic |
| TGCCCAAGTTTATAACCGTG+AGG | 0.709466 | 7.4:-19120465 | MS.gene39007:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATACTAATTTTTAAATCA+GGG | + | chr7.4:19119558-19119577 | None:intergenic | 10.0% |
| !!! | TTAATACTAATTTTTAAATC+AGG | + | chr7.4:19119559-19119578 | None:intergenic | 10.0% |
| !!! | TTTTAAAAATGTTTTGTTAT+AGG | - | chr7.4:19120544-19120563 | MS.gene39007:CDS | 10.0% |
| !!! | AATATTTTGTCTTGTAATTA+AGG | - | chr7.4:19119581-19119600 | MS.gene39007:intron | 15.0% |
| !!! | ATATTTTGTCTTGTAATTAA+GGG | - | chr7.4:19119582-19119601 | MS.gene39007:intron | 15.0% |
| !!! | TTGATAATAGTTAATATTCT+AGG | + | chr7.4:19120406-19120425 | None:intergenic | 15.0% |
| !!! | TTTTCAATTTTTTTTAAAGC+TGG | - | chr7.4:19120041-19120060 | MS.gene39007:intron | 15.0% |
| !! | AAAGTGACAACATAATTTAA+GGG | + | chr7.4:19120689-19120708 | None:intergenic | 20.0% |
| !! | AATAACCTATGAAATACTAA+AGG | - | chr7.4:19119831-19119850 | MS.gene39007:CDS | 20.0% |
| !! | ATAATTAAAATGTATGCTAG+TGG | + | chr7.4:19120654-19120673 | None:intergenic | 20.0% |
| !! | ATGTAGAAGTGATTATTTAT+GGG | - | chr7.4:19119203-19119222 | MS.gene39007:intron | 20.0% |
| !! | GATGATTAAATCAATAATGT+TGG | - | chr7.4:19120720-19120739 | MS.gene39007:CDS | 20.0% |
| !! | TAAAGTGACAACATAATTTA+AGG | + | chr7.4:19120690-19120709 | None:intergenic | 20.0% |
| !!! | AAAAATGTTTTGTTATAGGT+TGG | - | chr7.4:19120548-19120567 | MS.gene39007:CDS | 20.0% |
| !!! | AATGAAATAGAAGGTTTTTA+TGG | - | chr7.4:19120838-19120857 | MS.gene39007:CDS | 20.0% |
| !!! | ATTTTTTTTAAAGCTGGATA+AGG | - | chr7.4:19120047-19120066 | MS.gene39007:intron | 20.0% |
| !!! | TTTGATTTAATCCAAAAGAA+AGG | + | chr7.4:19119378-19119397 | None:intergenic | 20.0% |
| !!! | TTTTAAGTACATTTTCAGAA+TGG | - | chr7.4:19119631-19119650 | MS.gene39007:intron | 20.0% |
| ! | AAACATATGAAGATGAAATG+GGG | - | chr7.4:19119228-19119247 | MS.gene39007:intron | 25.0% |
| ! | AACTGAGGAAAACATAAAAT+GGG | - | chr7.4:19120135-19120154 | MS.gene39007:intron | 25.0% |
| ! | AAGTGACAACATAATTTAAG+GGG | + | chr7.4:19120688-19120707 | None:intergenic | 25.0% |
| ! | AGAAAAAATCATAGAGAACA+AGG | - | chr7.4:19120814-19120833 | MS.gene39007:CDS | 25.0% |
| ! | AGAAACATATGAAGATGAAA+TGG | - | chr7.4:19119226-19119245 | MS.gene39007:intron | 25.0% |
| ! | CATTCAATATTGTTGAGTTT+AGG | - | chr7.4:19119748-19119767 | MS.gene39007:CDS | 25.0% |
| ! | CTTATGTAGTCGATAAATAA+AGG | - | chr7.4:19120366-19120385 | MS.gene39007:intron | 25.0% |
| ! | GAAACATATGAAGATGAAAT+GGG | - | chr7.4:19119227-19119246 | MS.gene39007:intron | 25.0% |
| ! | GATGTAGAAGTGATTATTTA+TGG | - | chr7.4:19119202-19119221 | MS.gene39007:intron | 25.0% |
| ! | TACAATGTTAAACTGTTCAA+AGG | + | chr7.4:19120009-19120028 | None:intergenic | 25.0% |
| ! | TATCAATGTTTGTGATAGAT+TGG | - | chr7.4:19120420-19120439 | MS.gene39007:intron | 25.0% |
| ! | TGAACAGTTTAACATTGTAT+AGG | - | chr7.4:19120010-19120029 | MS.gene39007:intron | 25.0% |
| !!! | TTTTCAAGAATACAATCCAA+TGG | + | chr7.4:19119126-19119145 | None:intergenic | 25.0% |
| AACTGCAGTATTAAACCAAA+AGG | + | chr7.4:19119809-19119828 | None:intergenic | 30.0% | |
| AGGAAAACATAAAATGGGAA+AGG | - | chr7.4:19120140-19120159 | MS.gene39007:intron | 30.0% | |
| CAACTGAGGAAAACATAAAA+TGG | - | chr7.4:19120134-19120153 | MS.gene39007:intron | 30.0% | |
| CAGAAAAACACATAAAGTCA+AGG | - | chr7.4:19119400-19119419 | MS.gene39007:intron | 30.0% | |
| CTTTATCTTTCTCTTGAGAA+TGG | - | chr7.4:19119444-19119463 | MS.gene39007:intron | 30.0% | |
| GAACAAGGAAATGAAATAGA+AGG | - | chr7.4:19120829-19120848 | MS.gene39007:CDS | 30.0% | |
| GCAATTACAAAACAAGAGTT+TGG | - | chr7.4:19119035-19119054 | MS.gene39007:CDS | 30.0% | |
| GGTATCCTTTAGTATTTCAT+AGG | + | chr7.4:19119839-19119858 | None:intergenic | 30.0% | |
| TATGATGAGACATACCATAA+GGG | + | chr7.4:19120279-19120298 | None:intergenic | 30.0% | |
| TCTTACCTTTATTGTGACAT+TGG | + | chr7.4:19120627-19120646 | None:intergenic | 30.0% | |
| TGTAGTCGATAAATAAAGGT+CGG | - | chr7.4:19120370-19120389 | MS.gene39007:intron | 30.0% | |
| TTACAAAGTGGAAGAAACTT+TGG | - | chr7.4:19120893-19120912 | MS.gene39007:CDS | 30.0% | |
| TTGAATGTAACTACATGTGT+TGG | - | chr7.4:19119918-19119937 | MS.gene39007:intron | 30.0% | |
| ! | ATGGTTTTCTTCCTTTCTTT+TGG | - | chr7.4:19119364-19119383 | MS.gene39007:CDS | 30.0% |
| ! | CTCTTGAGAATGGAAATTTT+TGG | - | chr7.4:19119454-19119473 | MS.gene39007:intron | 30.0% |
| ! | GAAATAGAAGGTTTTTATGG+TGG | - | chr7.4:19120841-19120860 | MS.gene39007:CDS | 30.0% |
| ! | TGAATTCTTCTCTATGCTTT+TGG | + | chr7.4:19119304-19119323 | None:intergenic | 30.0% |
| !! | AATGTTTTGTTATAGGTTGG+TGG | - | chr7.4:19120551-19120570 | MS.gene39007:CDS | 30.0% |
| AACCAAAAGGACAATAGTAC+AGG | + | chr7.4:19119796-19119815 | None:intergenic | 35.0% | |
| AATCAGAAAGTTGCATAGCA+AGG | - | chr7.4:19120864-19120883 | MS.gene39007:CDS | 35.0% | |
| ACAAGTGTGCAAATCTCTTA+GGG | - | chr7.4:19119176-19119195 | MS.gene39007:CDS | 35.0% | |
| ACAATACTTGCTTTCCTTCA+TGG | - | chr7.4:19119345-19119364 | MS.gene39007:CDS | 35.0% | |
| ACATGTGAAGAAGAGTCAAT+AGG | + | chr7.4:19120178-19120197 | None:intergenic | 35.0% | |
| ACCTAGTGAATTATGCAATG+TGG | - | chr7.4:19119152-19119171 | MS.gene39007:CDS | 35.0% | |
| AGAAACAATGAGTTCCCTTA+TGG | - | chr7.4:19120262-19120281 | MS.gene39007:CDS | 35.0% | |
| AGAAAGGAAGAAAACCATGA+AGG | + | chr7.4:19119362-19119381 | None:intergenic | 35.0% | |
| ATTTGAGCATGGAGAAAAAG+AGG | - | chr7.4:19119065-19119084 | MS.gene39007:CDS | 35.0% | |
| CATTGCCAATGTCACAATAA+AGG | - | chr7.4:19120619-19120638 | MS.gene39007:CDS | 35.0% | |
| CTATGATGAGACATACCATA+AGG | + | chr7.4:19120280-19120299 | None:intergenic | 35.0% | |
| CTTTATTGTGACATTGGCAA+TGG | + | chr7.4:19120621-19120640 | None:intergenic | 35.0% | |
| GAGATCATGTTGAAATTCAG+TGG | - | chr7.4:19120236-19120255 | MS.gene39007:intron | 35.0% | |
| GGATTTGCATGATTTACCAT+TGG | - | chr7.4:19119107-19119126 | MS.gene39007:CDS | 35.0% | |
| GTACAGGTAAAAAGACAAGT+TGG | + | chr7.4:19119780-19119799 | None:intergenic | 35.0% | |
| GTGATTCTGCTTATAGACAA+TGG | - | chr7.4:19119262-19119281 | MS.gene39007:intron | 35.0% | |
| TACCTCACGGTTATAAACTT+GGG | + | chr7.4:19119487-19119506 | None:intergenic | 35.0% | |
| TATAACCGTGAGGTAAATAC+TGG | - | chr7.4:19119492-19119511 | MS.gene39007:intron | 35.0% | |
| TGAATTTCAACATGATCTCC+AGG | + | chr7.4:19120235-19120254 | None:intergenic | 35.0% | |
| TGGAAACATGTCAAAGTGAT+GGG | - | chr7.4:19120593-19120612 | MS.gene39007:CDS | 35.0% | |
| TTACCTCACGGTTATAAACT+TGG | + | chr7.4:19119488-19119507 | None:intergenic | 35.0% | |
| TTGGAAACATGTCAAAGTGA+TGG | - | chr7.4:19120592-19120611 | MS.gene39007:CDS | 35.0% | |
| TTGGCATCAAAATTTGAGCA+TGG | - | chr7.4:19119054-19119073 | MS.gene39007:CDS | 35.0% | |
| TTTACGCGACTATTTAGAAG+AGG | + | chr7.4:19120344-19120363 | None:intergenic | 35.0% | |
| ! | AAGTTCATGTTTTCTCTGAC+AGG | - | chr7.4:19120089-19120108 | MS.gene39007:intron | 35.0% |
| ! | ATGAAATGGGGCAAAGTTTT+AGG | - | chr7.4:19119240-19119259 | MS.gene39007:intron | 35.0% |
| ! | GTATAGTGTCATTGGTCATT+TGG | - | chr7.4:19120573-19120592 | MS.gene39007:CDS | 35.0% |
| ! | TACCTGTACTATTGTCCTTT+TGG | - | chr7.4:19119791-19119810 | MS.gene39007:CDS | 35.0% |
| !! | ACTTCAAATCGAAAGCATTC+CGG | + | chr7.4:19119966-19119985 | None:intergenic | 35.0% |
| !! | AGGTAAAAAGACAAGTTGGT+TGG | + | chr7.4:19119776-19119795 | None:intergenic | 35.0% |
| !!! | GTTAGTTTTAGTGTTGTGCA+CGG | + | chr7.4:19119860-19119879 | None:intergenic | 35.0% |
| CACAAGTGTGCAAATCTCTT+AGG | - | chr7.4:19119175-19119194 | MS.gene39007:CDS | 40.0% | |
| GAACAGATACCTTTCAAGCA+AGG | - | chr7.4:19119707-19119726 | MS.gene39007:CDS | 40.0% | |
| GCCACATTGCATAATTCACT+AGG | + | chr7.4:19119156-19119175 | None:intergenic | 40.0% | |
| TGCAACCAGTATTTACCTCA+CGG | + | chr7.4:19119500-19119519 | None:intergenic | 40.0% | |
| TGCTTAGATGACTTAAAGCC+TGG | - | chr7.4:19120214-19120233 | MS.gene39007:intron | 40.0% | |
| TGTGAAGAAGAGTCAATAGG+TGG | + | chr7.4:19120175-19120194 | None:intergenic | 40.0% | |
| TGTGTGAACTCCAAAATCAC+TGG | + | chr7.4:19120754-19120773 | None:intergenic | 40.0% | |
| TTGCACATACCTTGCTTGAA+AGG | + | chr7.4:19119719-19119738 | None:intergenic | 40.0% | |
| ! | CATTTTCAGAATGGTCATGC+TGG | - | chr7.4:19119640-19119659 | MS.gene39007:intron | 40.0% |
| !! | CATGTGTTGGTAACATGTGT+TGG | - | chr7.4:19119931-19119950 | MS.gene39007:intron | 40.0% |
| !! | TACTGGTTGCATGCAGATTT+TGG | - | chr7.4:19119509-19119528 | MS.gene39007:intron | 40.0% |
| !! | TTTGAAGTGTCGTGCTACAT+AGG | - | chr7.4:19119978-19119997 | MS.gene39007:intron | 40.0% |
| AGAGCAGCAATTGAGTCATC+TGG | + | chr7.4:19119426-19119445 | None:intergenic | 45.0% | |
| CACGGTTATAAACTTGGGCA+GGG | + | chr7.4:19119482-19119501 | None:intergenic | 45.0% | |
| CAGAAAGTTGCATAGCAAGG+AGG | - | chr7.4:19120867-19120886 | MS.gene39007:CDS | 45.0% | |
| GAGTTCACACAATACACAGC+TGG | - | chr7.4:19120763-19120782 | MS.gene39007:CDS | 45.0% | |
| GCAAGGAGGAGATTACAAAG+TGG | - | chr7.4:19120881-19120900 | MS.gene39007:CDS | 45.0% | |
| GGAAGAGAAAGCTTCTCTCT+TGG | - | chr7.4:19119086-19119105 | MS.gene39007:CDS | 45.0% | |
| TCACGGTTATAAACTTGGGC+AGG | + | chr7.4:19119483-19119502 | None:intergenic | 45.0% | |
| TCAGTTGTCCATCTTCCATG+AGG | + | chr7.4:19120121-19120140 | None:intergenic | 45.0% | |
| TCATGGAAGATGGACAACTG+AGG | - | chr7.4:19120120-19120139 | MS.gene39007:intron | 45.0% | |
| TGCCCAAGTTTATAACCGTG+AGG | - | chr7.4:19119482-19119501 | MS.gene39007:intron | 45.0% | |
| ! | AATACACAGCTGGCTCAAGA+TGG | - | chr7.4:19120773-19120792 | MS.gene39007:CDS | 45.0% |
| ! | GGTGACAGATCCAGTGATTT+TGG | - | chr7.4:19120741-19120760 | MS.gene39007:CDS | 45.0% |
| !! | GGTTGGTGGTATAGTGTCAT+TGG | - | chr7.4:19120565-19120584 | MS.gene39007:CDS | 45.0% |
| GGTACTCTCCTCATGGAAGA+TGG | - | chr7.4:19120110-19120129 | MS.gene39007:intron | 50.0% | |
| TCTGACAGGTACTCTCCTCA+TGG | - | chr7.4:19120103-19120122 | MS.gene39007:intron | 50.0% | |
| ! | CATGTGTTGGTGTCTGACAC+CGG | - | chr7.4:19119944-19119963 | MS.gene39007:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 19119033 | 19120936 | 19119033 | ID=MS.gene39007 |
| chr7.4 | mRNA | 19119033 | 19120936 | 19119033 | ID=MS.gene39007.t1;Parent=MS.gene39007 |
| chr7.4 | exon | 19120466 | 19120936 | 19120466 | ID=MS.gene39007.t1.exon1;Parent=MS.gene39007.t1 |
| chr7.4 | CDS | 19120466 | 19120936 | 19120466 | ID=cds.MS.gene39007.t1;Parent=MS.gene39007.t1 |
| chr7.4 | exon | 19120241 | 19120320 | 19120241 | ID=MS.gene39007.t1.exon2;Parent=MS.gene39007.t1 |
| chr7.4 | CDS | 19120241 | 19120320 | 19120241 | ID=cds.MS.gene39007.t1;Parent=MS.gene39007.t1 |
| chr7.4 | exon | 19119686 | 19119858 | 19119686 | ID=MS.gene39007.t1.exon3;Parent=MS.gene39007.t1 |
| chr7.4 | CDS | 19119686 | 19119858 | 19119686 | ID=cds.MS.gene39007.t1;Parent=MS.gene39007.t1 |
| chr7.4 | exon | 19119329 | 19119403 | 19119329 | ID=MS.gene39007.t1.exon4;Parent=MS.gene39007.t1 |
| chr7.4 | CDS | 19119329 | 19119403 | 19119329 | ID=cds.MS.gene39007.t1;Parent=MS.gene39007.t1 |
| chr7.4 | exon | 19119033 | 19119220 | 19119033 | ID=MS.gene39007.t1.exon5;Parent=MS.gene39007.t1 |
| chr7.4 | CDS | 19119033 | 19119220 | 19119033 | ID=cds.MS.gene39007.t1;Parent=MS.gene39007.t1 |
| Gene Sequence |
| Protein sequence |
