Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40243.t1 | CAB65283.1 | 99.1 | 117 | 1 | 0 | 1 | 117 | 1 | 117 | 1.00E-53 | 219.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40243.t1 | Q02921 | 58.8 | 80 | 33 | 0 | 27 | 106 | 17 | 96 | 1.2e-18 | 94.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40243.t1 | Q9SBR6 | 99.1 | 117 | 1 | 0 | 1 | 117 | 1 | 117 | 7.5e-54 | 219.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053420 | MS.gene40243 | 0.81515 | 1.07E-51 | -1.69E-46 |
| MS.gene053421 | MS.gene40243 | 0.831682 | 1.45E-55 | -1.69E-46 |
| MS.gene054707 | MS.gene40243 | 0.800381 | 1.48E-48 | -1.69E-46 |
| MS.gene055202 | MS.gene40243 | 0.826115 | 3.24E-54 | -1.69E-46 |
| MS.gene05589 | MS.gene40243 | -0.800511 | 1.39E-48 | -1.69E-46 |
| MS.gene056856 | MS.gene40243 | 0.80622 | 9.14E-50 | -1.69E-46 |
| MS.gene057768 | MS.gene40243 | 0.806434 | 8.24E-50 | -1.69E-46 |
| MS.gene058171 | MS.gene40243 | 0.823307 | 1.49E-53 | -1.69E-46 |
| MS.gene058173 | MS.gene40243 | 0.824345 | 8.49E-54 | -1.69E-46 |
| MS.gene058175 | MS.gene40243 | 0.822761 | 1.99E-53 | -1.69E-46 |
| MS.gene05960 | MS.gene40243 | 0.811362 | 7.27E-51 | -1.69E-46 |
| MS.gene060595 | MS.gene40243 | 0.800978 | 1.12E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40243.t1 | MTR_3g110390 | 95.726 | 117 | 5 | 0 | 1 | 117 | 1 | 117 | 4.74e-78 | 226 |
| MS.gene40243.t1 | MTR_3g110390 | 94.872 | 117 | 5 | 1 | 1 | 117 | 1 | 116 | 2.12e-75 | 219 |
| MS.gene40243.t1 | MTR_1g007360 | 70.085 | 117 | 33 | 2 | 1 | 117 | 1 | 115 | 9.84e-58 | 174 |
| MS.gene40243.t1 | MTR_4g113820 | 56.790 | 81 | 35 | 0 | 27 | 107 | 21 | 101 | 2.98e-24 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40243.t1 | AT5G25940 | 57.955 | 88 | 37 | 0 | 19 | 106 | 16 | 103 | 2.38e-21 | 82.4 |
Find 26 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCTGCTGACAAAACAATCT+TGG | 0.341283 | 3.3:-91315490 | MS.gene40243:CDS |
| TCAGAGACTCTTCTAGCAGC+AGG | 0.453559 | 3.3:+91315448 | None:intergenic |
| TTGCAGTTCGGATGATTCCA+TGG | 0.467990 | 3.3:-91315997 | MS.gene40243:CDS |
| GAACCTCAATTATACTGCTC+AGG | 0.475697 | 3.3:-91315966 | MS.gene40243:CDS |
| AACATCTTCTGCTCTTCTGC+GGG | 0.476450 | 3.3:+91318346 | None:intergenic |
| AGGTGTGCGTGCTGGATTCA+AGG | 0.476456 | 3.3:-91318048 | MS.gene40243:CDS |
| GGATTCAAGGCAGCCGGCAT+CGG | 0.492095 | 3.3:-91318035 | MS.gene40243:CDS |
| ATTCACAGTTGGTTGCAGTT+CGG | 0.494528 | 3.3:-91316009 | MS.gene40243:intron |
| CGTGCTGGATTCAAGGCAGC+CGG | 0.500054 | 3.3:-91318041 | MS.gene40243:CDS |
| CACATGTCCCTCAGTTCTGA+TGG | 0.505127 | 3.3:+91318406 | None:intergenic |
| CAACATCTTCTGCTCTTCTG+CGG | 0.519948 | 3.3:+91318345 | None:intergenic |
| TTGAGGTTCGCCTTTGCCCA+TGG | 0.523296 | 3.3:+91315980 | None:intergenic |
| AGGTCTAGTCAATGTACAGC+TGG | 0.529239 | 3.3:-91318322 | MS.gene40243:intron |
| CAGGCGCTTATCATATCTGC+CGG | 0.532856 | 3.3:-91315947 | MS.gene40243:intron |
| TATGCAGAAGGTGTGCGTGC+TGG | 0.539033 | 3.3:-91318056 | MS.gene40243:intron |
| GGCAGCCGGCATCGGATGTG+TGG | 0.545487 | 3.3:-91318027 | MS.gene40243:CDS |
| CAGAGACTCTTCTAGCAGCA+GGG | 0.568654 | 3.3:+91315449 | None:intergenic |
| ACTCGCCACACATCCGATGC+CGG | 0.574386 | 3.3:+91318022 | None:intergenic |
| TGCAGTTCGGATGATTCCAT+GGG | 0.575792 | 3.3:-91315996 | MS.gene40243:CDS |
| CATCAGAACTGAGGGACATG+TGG | 0.592369 | 3.3:-91318405 | MS.gene40243:CDS |
| GGGAATTCCATCAGAACTGA+GGG | 0.594629 | 3.3:-91318413 | MS.gene40243:CDS |
| CAGAAGAGCAGAAGATGTTG+AGG | 0.594698 | 3.3:-91318342 | MS.gene40243:CDS |
| GCGCCTGAGCAGTATAATTG+AGG | 0.595288 | 3.3:+91315963 | None:intergenic |
| TCGGATGATTCCATGGGCAA+AGG | 0.603271 | 3.3:-91315990 | MS.gene40243:CDS |
| AAGCTTACGTACAGTAGGCA+CGG | 0.644261 | 3.3:+91317998 | None:intergenic |
| TGGGAATTCCATCAGAACTG+AGG | 0.659138 | 3.3:-91318414 | MS.gene40243:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAATAATATTTTTTTT+CGG | + | chr3.3:91317211-91317230 | None:intergenic | 0.0% |
| !!! | ATTATTTTTATTTTTTTAAT+AGG | - | chr3.3:91316269-91316288 | MS.gene40243:intron | 0.0% |
| !!! | TATTTTTTATTTTTTTAATA+AGG | + | chr3.3:91317594-91317613 | None:intergenic | 0.0% |
| !!! | TATTTTTTTTATTAAAAATA+AGG | - | chr3.3:91317555-91317574 | MS.gene40243:intron | 0.0% |
| !!! | TTATTTTTATTTTTTTAATA+GGG | - | chr3.3:91316270-91316289 | MS.gene40243:intron | 0.0% |
| !! | AAAAAAATGAAAAAAAATTC+TGG | + | chr3.3:91317425-91317444 | None:intergenic | 10.0% |
| !! | TAAAAATAAAAAGTAAAATC+TGG | + | chr3.3:91317323-91317342 | None:intergenic | 10.0% |
| !! | TTAAAAAAATGAAAACATTA+TGG | + | chr3.3:91317295-91317314 | None:intergenic | 10.0% |
| !! | TTAAAAAAATGATAACATTA+TGG | - | chr3.3:91316528-91316547 | MS.gene40243:intron | 10.0% |
| !!! | AAAAAAATCATATCTTTTTT+CGG | - | chr3.3:91316613-91316632 | MS.gene40243:intron | 10.0% |
| !!! | ACTAAAAATACATATTTTTT+TGG | - | chr3.3:91315914-91315933 | MS.gene40243:intron | 10.0% |
| !!! | CGAAATTTTTTTAAAAAAAT+TGG | - | chr3.3:91316438-91316457 | MS.gene40243:intron | 10.0% |
| !!! | CGAAATTTTTTTAAAAAAAT+TGG | + | chr3.3:91316457-91316438 | None:intergenic | 10.0% |
| !!! | TTATTTTTTTTTCATTTTTC+CGG | - | chr3.3:91317221-91317240 | MS.gene40243:intron | 10.0% |
| !! | AAAAAAACAGAAATTCTTTA+AGG | + | chr3.3:91316020-91316039 | None:intergenic | 15.0% |
| !! | AAAAAAACGAAAAAAAATTC+TGG | - | chr3.3:91316397-91316416 | MS.gene40243:intron | 15.0% |
| !! | AAAGCTTAACATTAAAAAAA+GGG | + | chr3.3:91317815-91317834 | None:intergenic | 15.0% |
| !! | ATGAATAAGAAAATTAAAAC+TGG | + | chr3.3:91315585-91315604 | None:intergenic | 15.0% |
| !! | TAAAAATGAAAACAAAAATC+TGG | - | chr3.3:91316470-91316489 | MS.gene40243:intron | 15.0% |
| !! | TAAAAATGAAAACAAAATTC+TGG | + | chr3.3:91317353-91317372 | None:intergenic | 15.0% |
| !! | TAAAGCTTAACATTAAAAAA+AGG | + | chr3.3:91317816-91317835 | None:intergenic | 15.0% |
| !! | TTTACTCCTATAATTAAATT+TGG | + | chr3.3:91318022-91318041 | None:intergenic | 15.0% |
| !!! | AACAAACTTTAAGAAAATTA+TGG | - | chr3.3:91315941-91315960 | MS.gene40243:intron | 15.0% |
| !!! | TGATTAATGAATTTTATCTA+AGG | + | chr3.3:91318191-91318210 | None:intergenic | 15.0% |
| !!! | TGATTTTTTTTTCATTTTTC+CGG | + | chr3.3:91316603-91316622 | None:intergenic | 15.0% |
| !!! | TTCTAATTTTGATAATATAG+TGG | - | chr3.3:91318292-91318311 | MS.gene40243:intron | 15.0% |
| !!! | TTTTTCAAAAATTTCAAGAT+TGG | - | chr3.3:91317062-91317081 | MS.gene40243:intron | 15.0% |
| !!! | TTTTTCAAAAATTTCAAGAT+TGG | + | chr3.3:91317081-91317062 | None:intergenic | 15.0% |
| !! | CATATTAAGAAAATGACAAA+CGG | + | chr3.3:91315777-91315796 | None:intergenic | 20.0% |
| !! | GGTATATAAATCATGTTATA+CGG | - | chr3.3:91317167-91317186 | MS.gene40243:intron | 20.0% |
| !! | GGTATATAAATCATGTTATA+CGG | + | chr3.3:91317186-91317167 | None:intergenic | 20.0% |
| !! | GTATAACATGATTTATATAC+CGG | - | chr3.3:91316656-91316675 | MS.gene40243:intron | 20.0% |
| !! | GTATAACATGATTTATATAC+CGG | + | chr3.3:91316675-91316656 | None:intergenic | 20.0% |
| !!! | TTTGATAATATAGTGGTTTT+TGG | - | chr3.3:91318299-91318318 | MS.gene40243:intron | 20.0% |
| ! | ACTCCTATAATTAAATTTGG+TGG | + | chr3.3:91318019-91318038 | None:intergenic | 25.0% |
| ! | ATACATTGTATCCTGTTATT+CGG | - | chr3.3:91316690-91316709 | MS.gene40243:intron | 25.0% |
| ! | ATACATTGTATCCTGTTATT+CGG | + | chr3.3:91316709-91316690 | None:intergenic | 25.0% |
| ! | ATCACTTGAATCTTATTACT+TGG | - | chr3.3:91318207-91318226 | MS.gene40243:intron | 25.0% |
| ! | ATGCCACCAAATTTAATTAT+AGG | - | chr3.3:91318013-91318032 | MS.gene40243:CDS | 25.0% |
| ! | TATCTCAAATGTAACAGATA+AGG | + | chr3.3:91316063-91316082 | None:intergenic | 25.0% |
| !! | ATTTTCATCAATCAAGTCAT+AGG | - | chr3.3:91315662-91315681 | MS.gene40243:intron | 25.0% |
| !! | TCATTTTCTTAATATGCAGA+AGG | - | chr3.3:91315781-91315800 | MS.gene40243:intron | 25.0% |
| !!! | ATCGAAAGAATCTTTTTTAC+AGG | - | chr3.3:91317741-91317760 | MS.gene40243:intron | 25.0% |
| !!! | ATCGAAAGAATCTTTTTTAC+AGG | + | chr3.3:91317760-91317741 | None:intergenic | 25.0% |
| !!! | ATTTTTTTAATAAGGACACG+TGG | + | chr3.3:91317586-91317605 | None:intergenic | 25.0% |
| !!! | TAGGAGTAAAAGTATCATTT+CGG | - | chr3.3:91318032-91318051 | MS.gene40243:CDS | 25.0% |
| !!! | TCGAAAGAATCTTTTTTACA+GGG | - | chr3.3:91317742-91317761 | MS.gene40243:intron | 25.0% |
| !!! | TCGAAAGAATCTTTTTTACA+GGG | + | chr3.3:91317761-91317742 | None:intergenic | 25.0% |
| !!! | TTTCCAGATTTTTTCAATAC+CGG | - | chr3.3:91316581-91316600 | MS.gene40243:intron | 25.0% |
| !!! | TTTCCAGATTTTTTCAATAC+CGG | + | chr3.3:91316600-91316581 | None:intergenic | 25.0% |
| ATTAAAAGCTTACGTACAGT+AGG | + | chr3.3:91315859-91315878 | None:intergenic | 30.0% | |
| GACTTGATTGATGAAAATCT+TGG | + | chr3.3:91315660-91315679 | None:intergenic | 30.0% | |
| TTATGGATTTGAGAAAACCA+TGG | - | chr3.3:91315958-91315977 | MS.gene40243:CDS | 30.0% | |
| ! | ATTTTTACCCCCTGTAATAT+AGG | + | chr3.3:91317785-91317804 | None:intergenic | 30.0% |
| ! | CAATGTATATTGATTGACAC+CGG | - | chr3.3:91317146-91317165 | MS.gene40243:intron | 30.0% |
| ! | CAATGTATATTGATTGACAC+CGG | + | chr3.3:91317165-91317146 | None:intergenic | 30.0% |
| ! | TACTGTACGTAAGCTTTTAA+TGG | - | chr3.3:91315858-91315877 | MS.gene40243:intron | 30.0% |
| ! | TTAGTGTCTACTAGTTTCAA+TGG | + | chr3.3:91316915-91316934 | None:intergenic | 30.0% |
| ! | TTTCCGGTATTGAAAAAATC+TGG | - | chr3.3:91317237-91317256 | MS.gene40243:intron | 30.0% |
| ! | TTTCCGGTATTGAAAAAATC+TGG | + | chr3.3:91317256-91317237 | None:intergenic | 30.0% |
| !! | AGCTTTAGAAAATTCACAGT+TGG | - | chr3.3:91317829-91317848 | MS.gene40243:intron | 30.0% |
| !! | CAGCAAACTTGTGTTTTTAT+TGG | + | chr3.3:91315474-91315493 | None:intergenic | 30.0% |
| !! | GCTTTTAATGGACAAAACTT+AGG | - | chr3.3:91315870-91315889 | MS.gene40243:intron | 30.0% |
| !!! | ATTTTTTTAATAGGGACACG+TGG | - | chr3.3:91316278-91316297 | MS.gene40243:intron | 30.0% |
| !!! | CGAAAGAATCTTTTTTACAG+GGG | - | chr3.3:91317743-91317762 | MS.gene40243:intron | 30.0% |
| !!! | CGAAAGAATCTTTTTTACAG+GGG | + | chr3.3:91317762-91317743 | None:intergenic | 30.0% |
| !!! | GAAAGAATCTTTTTTACAGG+GGG | - | chr3.3:91317744-91317763 | MS.gene40243:intron | 30.0% |
| !!! | GAAAGAATCTTTTTTACAGG+GGG | + | chr3.3:91317763-91317744 | None:intergenic | 30.0% |
| AAAAACCATGTCCGAATAAC+AGG | - | chr3.3:91317120-91317139 | MS.gene40243:intron | 35.0% | |
| AAAAACCATGTCCGAATAAC+AGG | + | chr3.3:91317139-91317120 | None:intergenic | 35.0% | |
| CTTCTTAACTAAGCTATCCA+TGG | + | chr3.3:91315978-91315997 | None:intergenic | 35.0% | |
| GAATCTTCATATTTCAGGGT+TGG | - | chr3.3:91317717-91317736 | MS.gene40243:intron | 35.0% | |
| GAATCTTCATATTTCAGGGT+TGG | + | chr3.3:91317736-91317717 | None:intergenic | 35.0% | |
| GACGGAATCTTCATATTTCA+GGG | - | chr3.3:91317713-91317732 | MS.gene40243:intron | 35.0% | |
| GACGGAATCTTCATATTTCA+GGG | + | chr3.3:91317732-91317713 | None:intergenic | 35.0% | |
| TAGCTAACGATTTGATTCCA+CGG | - | chr3.3:91318083-91318102 | MS.gene40243:intron | 35.0% | |
| TCAATCAAGTCATAGGTGAT+AGG | - | chr3.3:91315669-91315688 | MS.gene40243:intron | 35.0% | |
| TGACGGAATCTTCATATTTC+AGG | + | chr3.3:91316160-91316179 | None:intergenic | 35.0% | |
| ! | TTTTTACCCCCCTGTAATAT+AGG | - | chr3.3:91316088-91316107 | MS.gene40243:intron | 35.0% |
| !! | AATTTAAGTTGAGATCGCAC+CGG | + | chr3.3:91317924-91317943 | None:intergenic | 35.0% |
| !!! | TTTTTTACAGGGGGAAAAAC+CGG | - | chr3.3:91317753-91317772 | MS.gene40243:intron | 35.0% |
| ATTCACAGTTGGTTGCAGTT+CGG | - | chr3.3:91317840-91317859 | MS.gene40243:intron | 40.0% | |
| CAACTAATCGAGAGTTTGGT+TGG | - | chr3.3:91318118-91318137 | MS.gene40243:intron | 40.0% | |
| CATAGGTGATAGGTATAGTG+TGG | - | chr3.3:91315679-91315698 | MS.gene40243:intron | 40.0% | |
| CGACGGAATCTTCATATTTC+AGG | - | chr3.3:91317712-91317731 | MS.gene40243:intron | 40.0% | |
| CGTCATCAAAAAAGATGACG+TGG | - | chr3.3:91317640-91317659 | MS.gene40243:intron | 40.0% | |
| GAACCTCAATTATACTGCTC+AGG | - | chr3.3:91317883-91317902 | MS.gene40243:intron | 40.0% | |
| GACTCAACTAATCGAGAGTT+TGG | - | chr3.3:91318114-91318133 | MS.gene40243:intron | 40.0% | |
| TGTATCCTGTTATTCGGACA+TGG | - | chr3.3:91316696-91316715 | MS.gene40243:intron | 40.0% | |
| TGTATCCTGTTATTCGGACA+TGG | + | chr3.3:91316715-91316696 | None:intergenic | 40.0% | |
| !!! | CGTCATCTTTTTTGATGACG+TGG | + | chr3.3:91317640-91317659 | None:intergenic | 40.0% |
| !!! | CTTTTTTACAGGGGGAAAAC+CGG | + | chr3.3:91316120-91316139 | None:intergenic | 40.0% |
| AAAACACCCCTGGTCAAATC+TGG | - | chr3.3:91316179-91316198 | MS.gene40243:intron | 45.0% | |
| AAAACACCCCTGGTCAAATC+TGG | + | chr3.3:91316198-91316179 | None:intergenic | 45.0% | |
| AACATCTTCTGCTCTTCTGC+GGG | + | chr3.3:91315506-91315525 | None:intergenic | 45.0% | |
| AACTCGCCTATATTACAGGG+GGG | + | chr3.3:91317795-91317776 | None:intergenic | 45.0% | |
| AAGCTTACGTACAGTAGGCA+CGG | + | chr3.3:91315854-91315873 | None:intergenic | 45.0% | |
| AGGTCTAGTCAATGTACAGC+TGG | - | chr3.3:91315527-91315546 | MS.gene40243:intron | 45.0% | |
| CAACATCTTCTGCTCTTCTG+CGG | + | chr3.3:91315507-91315526 | None:intergenic | 45.0% | |
| CAGAAGAGCAGAAGATGTTG+AGG | - | chr3.3:91315507-91315526 | MS.gene40243:CDS | 45.0% | |
| CCTGTAATATAGGCGAGTTC+CGG | - | chr3.3:91316098-91316117 | MS.gene40243:intron | 45.0% | |
| CCTGTAATATAGGCGAGTTC+CGG | + | chr3.3:91316117-91316098 | None:intergenic | 45.0% | |
| CGCTGCTGACAAAACAATCT+TGG | - | chr3.3:91318359-91318378 | MS.gene40243:CDS | 45.0% | |
| CGGAACTCGCCTATATTACA+GGG | - | chr3.3:91317773-91317792 | MS.gene40243:intron | 45.0% | |
| CGGAACTCGCCTATATTACA+GGG | + | chr3.3:91317792-91317773 | None:intergenic | 45.0% | |
| CGTCATCAAAAAAGGTGACG+TGG | + | chr3.3:91316231-91316250 | None:intergenic | 45.0% | |
| GAACTCGCCTATATTACAGG+GGG | - | chr3.3:91317775-91317794 | MS.gene40243:intron | 45.0% | |
| GAACTCGCCTATATTACAGG+GGG | + | chr3.3:91317794-91317775 | None:intergenic | 45.0% | |
| GGAACTCGCCTATATTACAG+GGG | - | chr3.3:91317774-91317793 | MS.gene40243:intron | 45.0% | |
| GGAACTCGCCTATATTACAG+GGG | + | chr3.3:91317793-91317774 | None:intergenic | 45.0% | |
| GGGAATTCCATCAGAACTGA+GGG | - | chr3.3:91315436-91315455 | MS.gene40243:CDS | 45.0% | |
| TGCAGTTCGGATGATTCCAT+GGG | - | chr3.3:91317853-91317872 | MS.gene40243:intron | 45.0% | |
| TGGGAATTCCATCAGAACTG+AGG | - | chr3.3:91315435-91315454 | MS.gene40243:CDS | 45.0% | |
| TTGCAGTTCGGATGATTCCA+TGG | - | chr3.3:91317852-91317871 | MS.gene40243:intron | 45.0% | |
| !!! | CGTCACCTTTTTTGATGACG+TGG | - | chr3.3:91316231-91316250 | MS.gene40243:intron | 45.0% |
| !!! | TTTGACCAGGGGTGTTTTGA+CGG | + | chr3.3:91316177-91316196 | None:intergenic | 45.0% |
| !! | AAAAAAGATAAAAAAAAATA+TGG | + | chr3.3:91317005-91317024 | None:intergenic | 5.0% |
| !! | TAAAAATTAAAATTAAAATC+TGG | - | chr3.3:91316500-91316519 | MS.gene40243:intron | 5.0% |
| !!! | CAATTTTTTTAAAAAAATTT+CGG | - | chr3.3:91317383-91317402 | MS.gene40243:intron | 5.0% |
| !!! | CAATTTTTTTAAAAAAATTT+CGG | + | chr3.3:91317402-91317383 | None:intergenic | 5.0% |
| AGATTCCGTCAAAACACCCC+TGG | - | chr3.3:91316169-91316188 | MS.gene40243:intron | 50.0% | |
| AGTTGAGTCTGTATCGTCCG+TGG | + | chr3.3:91318103-91318122 | None:intergenic | 50.0% | |
| CAGAGACTCTTCTAGCAGCA+GGG | + | chr3.3:91318403-91318422 | None:intergenic | 50.0% | |
| CAGGCGCTTATCATATCTGC+CGG | - | chr3.3:91317902-91317921 | MS.gene40243:intron | 50.0% | |
| CATCAGAACTGAGGGACATG+TGG | - | chr3.3:91315444-91315463 | MS.gene40243:CDS | 50.0% | |
| CCGGAACTCGCCTATATTAC+AGG | - | chr3.3:91317772-91317791 | MS.gene40243:intron | 50.0% | |
| CCGGAACTCGCCTATATTAC+AGG | + | chr3.3:91317791-91317772 | None:intergenic | 50.0% | |
| GCGCCTGAGCAGTATAATTG+AGG | + | chr3.3:91317889-91317908 | None:intergenic | 50.0% | |
| GCGTGCCACGTCATCAAAAA+AGG | + | chr3.3:91317651-91317632 | None:intergenic | 50.0% | |
| TCAGAGACTCTTCTAGCAGC+AGG | + | chr3.3:91318404-91318423 | None:intergenic | 50.0% | |
| TCGGATGATTCCATGGGCAA+AGG | - | chr3.3:91317859-91317878 | MS.gene40243:intron | 50.0% | |
| ! | CACATGTCCCTCAGTTCTGA+TGG | + | chr3.3:91315446-91315465 | None:intergenic | 50.0% |
| !!! | TTGACCAGGGGTGTTTTCGA+CGG | - | chr3.3:91317695-91317714 | MS.gene40243:intron | 50.0% |
| AGGTGTGCGTGCTGGATTCA+AGG | - | chr3.3:91315801-91315820 | MS.gene40243:intron | 55.0% | |
| CGTGTGCCAGATTTGACCAG+GGG | - | chr3.3:91317683-91317702 | MS.gene40243:intron | 55.0% | |
| CGTGTGCCAGATTTGACCAG+GGG | + | chr3.3:91317702-91317683 | None:intergenic | 55.0% | |
| GATTCCGTCGAAAACACCCC+TGG | + | chr3.3:91317702-91317721 | None:intergenic | 55.0% | |
| GCGTGTGCCAGATTTGACCA+GGG | - | chr3.3:91317682-91317701 | MS.gene40243:intron | 55.0% | |
| GCGTGTGCCAGATTTGACCA+GGG | + | chr3.3:91317701-91317682 | None:intergenic | 55.0% | |
| TTGAGGTTCGCCTTTGCCCA+TGG | + | chr3.3:91317872-91317891 | None:intergenic | 55.0% | |
| ! | TATGCAGAAGGTGTGCGTGC+TGG | - | chr3.3:91315793-91315812 | MS.gene40243:intron | 55.0% |
| ACTCGCCACACATCCGATGC+CGG | + | chr3.3:91315830-91315849 | None:intergenic | 60.0% | |
| CGTGCTGGATTCAAGGCAGC+CGG | - | chr3.3:91315808-91315827 | MS.gene40243:intron | 60.0% | |
| GGATTCAAGGCAGCCGGCAT+CGG | - | chr3.3:91315814-91315833 | MS.gene40243:intron | 60.0% | |
| GGCGTGTGCCAGATTTGACC+AGG | - | chr3.3:91317681-91317700 | MS.gene40243:intron | 60.0% | |
| GGCGTGTGCCAGATTTGACC+AGG | + | chr3.3:91317700-91317681 | None:intergenic | 60.0% | |
| GGTCAAATCTGGCACACGCC+AGG | - | chr3.3:91316190-91316209 | MS.gene40243:intron | 60.0% | |
| GGTCAAATCTGGCACACGCC+AGG | + | chr3.3:91316209-91316190 | None:intergenic | 60.0% | |
| !! | GCACACGCCAGGTGCTGATG+TGG | - | chr3.3:91316201-91316220 | MS.gene40243:intron | 65.0% |
| !! | GCACACGCCAGGTGCTGATG+TGG | + | chr3.3:91316220-91316201 | None:intergenic | 65.0% |
| TGGCGCGCCACATCAGCACC+TGG | - | chr3.3:91317660-91317679 | MS.gene40243:intron | 70.0% | |
| TGGCGCGCCACATCAGCACC+TGG | + | chr3.3:91317679-91317660 | None:intergenic | 70.0% | |
| ! | GGCAGCCGGCATCGGATGTG+TGG | - | chr3.3:91315822-91315841 | MS.gene40243:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 91315434 | 91318437 | 91315434 | ID=MS.gene40243 |
| chr3.3 | mRNA | 91315434 | 91318437 | 91315434 | ID=MS.gene40243.t1;Parent=MS.gene40243 |
| chr3.3 | exon | 91318323 | 91318437 | 91318323 | ID=MS.gene40243.t1.exon1;Parent=MS.gene40243.t1 |
| chr3.3 | CDS | 91318323 | 91318437 | 91318323 | ID=cds.MS.gene40243.t1;Parent=MS.gene40243.t1 |
| chr3.3 | exon | 91318010 | 91318071 | 91318010 | ID=MS.gene40243.t1.exon2;Parent=MS.gene40243.t1 |
| chr3.3 | CDS | 91318010 | 91318071 | 91318010 | ID=cds.MS.gene40243.t1;Parent=MS.gene40243.t1 |
| chr3.3 | exon | 91315948 | 91316023 | 91315948 | ID=MS.gene40243.t1.exon3;Parent=MS.gene40243.t1 |
| chr3.3 | CDS | 91315948 | 91316023 | 91315948 | ID=cds.MS.gene40243.t1;Parent=MS.gene40243.t1 |
| chr3.3 | exon | 91315434 | 91315534 | 91315434 | ID=MS.gene40243.t1.exon4;Parent=MS.gene40243.t1 |
| chr3.3 | CDS | 91315434 | 91315534 | 91315434 | ID=cds.MS.gene40243.t1;Parent=MS.gene40243.t1 |
| Gene Sequence |
| Protein sequence |
