Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40531.t1 | XP_003610625.1 | 94.7 | 490 | 23 | 1 | 1 | 490 | 1 | 487 | 8.80E-264 | 919.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40531.t1 | Q9LH39 | 73.4 | 466 | 118 | 4 | 10 | 474 | 19 | 479 | 1.3e-194 | 680.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40531.t1 | G7K0X5 | 94.7 | 490 | 23 | 1 | 1 | 490 | 1 | 487 | 6.3e-264 | 919.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene40531 | MS.gene019112 | PPI |
| MS.gene028082 | MS.gene40531 | PPI |
| MS.gene40531 | MS.gene72828 | PPI |
| MS.gene40531 | MS.gene070082 | PPI |
| MS.gene40531 | MS.gene039946 | PPI |
| MS.gene22262 | MS.gene40531 | PPI |
| MS.gene40531 | MS.gene84987 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40531.t1 | MTR_5g005160 | 94.694 | 490 | 23 | 1 | 1 | 490 | 1 | 487 | 0.0 | 890 |
| MS.gene40531.t1 | MTR_5g026780 | 58.409 | 440 | 180 | 3 | 12 | 449 | 45 | 483 | 0.0 | 522 |
| MS.gene40531.t1 | MTR_5g026780 | 58.409 | 440 | 180 | 3 | 12 | 449 | 29 | 467 | 0.0 | 522 |
| MS.gene40531.t1 | MTR_1g112950 | 58.140 | 430 | 179 | 1 | 12 | 441 | 25 | 453 | 7.02e-179 | 509 |
| MS.gene40531.t1 | MTR_0031s0060 | 52.444 | 450 | 188 | 3 | 1 | 449 | 128 | 552 | 2.37e-164 | 480 |
| MS.gene40531.t1 | MTR_8g085630 | 49.548 | 442 | 219 | 3 | 2 | 440 | 29 | 469 | 3.81e-142 | 417 |
| MS.gene40531.t1 | MTR_5g064750 | 47.045 | 440 | 229 | 3 | 12 | 448 | 24 | 462 | 1.04e-132 | 392 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40531.t1 | AT3G19553 | 73.391 | 466 | 118 | 4 | 10 | 474 | 19 | 479 | 0.0 | 663 |
| MS.gene40531.t1 | AT1G31830 | 55.982 | 443 | 187 | 2 | 4 | 439 | 33 | 474 | 0.0 | 523 |
| MS.gene40531.t1 | AT1G31830 | 55.982 | 443 | 187 | 2 | 4 | 439 | 17 | 458 | 0.0 | 521 |
| MS.gene40531.t1 | AT5G05630 | 55.909 | 440 | 191 | 2 | 5 | 442 | 45 | 483 | 0.0 | 520 |
| MS.gene40531.t1 | AT1G31820 | 52.340 | 470 | 208 | 3 | 2 | 469 | 25 | 480 | 1.28e-167 | 482 |
| MS.gene40531.t1 | AT3G13620 | 46.756 | 447 | 230 | 5 | 10 | 451 | 27 | 470 | 4.53e-130 | 386 |
Find 113 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCGGCTTAGTCTGATTT+TGG | 0.073103 | 5.2:+391058 | None:intergenic |
| CTTTGGATATCCTCTGCTTT+TGG | 0.256985 | 5.2:-391347 | MS.gene40531:CDS |
| GCCCGTATTCCTGCTCTCTT+AGG | 0.274297 | 5.2:-391200 | MS.gene40531:CDS |
| AGAGGTAATAAGGTTAGTTT+TGG | 0.281281 | 5.2:+391554 | None:intergenic |
| TCAATTTCTTATATGCTATA+GGG | 0.288982 | 5.2:-390198 | MS.gene40531:CDS |
| ACAACGGTGGCTATGTTCTT+TGG | 0.294038 | 5.2:-391364 | MS.gene40531:CDS |
| GTTACTTCAATAACATGTTT+TGG | 0.298728 | 5.2:-391001 | MS.gene40531:CDS |
| ATTTATCTTGTACCCTATCT+TGG | 0.304077 | 5.2:-389984 | MS.gene40531:CDS |
| TAGAGCAATCAGAGGTAATA+AGG | 0.309669 | 5.2:+391544 | None:intergenic |
| CTGAAAGGTCTATAAAGATT+TGG | 0.310531 | 5.2:+390130 | None:intergenic |
| CTCAATTTCTTATATGCTAT+AGG | 0.313068 | 5.2:-390199 | MS.gene40531:CDS |
| GAAGTCTCCGGCGGTCCATT+TGG | 0.336911 | 5.2:-391512 | MS.gene40531:CDS |
| TCAGCGGTGATGAGAGCTTC+AGG | 0.337698 | 5.2:+391407 | None:intergenic |
| ACTTATTCTTGTTATGTGTC+TGG | 0.338301 | 5.2:-390053 | MS.gene40531:CDS |
| TTCTTGGCTTGAACCAAGAT+AGG | 0.345537 | 5.2:+389971 | None:intergenic |
| GAAATGGTTTAGTGGTGTTA+TGG | 0.353410 | 5.2:-391294 | MS.gene40531:CDS |
| GAATTTGAATTATTGGGATA+AGG | 0.366638 | 5.2:-390979 | MS.gene40531:CDS |
| AGAGTTCCGTTCCAAACATT+TGG | 0.378355 | 5.2:-390109 | MS.gene40531:CDS |
| GCATGGCCGCACCAAATGTT+TGG | 0.379459 | 5.2:+390098 | None:intergenic |
| CTCTGTAATTCAAATAAGTA+AGG | 0.394814 | 5.2:+391165 | None:intergenic |
| GATAAGGCTAGTACTCTTGC+AGG | 0.406915 | 5.2:-390963 | MS.gene40531:CDS |
| TGAGTTCCCCTCCAACTGAA+TGG | 0.407650 | 5.2:-390836 | MS.gene40531:CDS |
| TTGAGAACGTTCTTTGTAAG+TGG | 0.408514 | 5.2:-390025 | MS.gene40531:CDS |
| GAGTTCCCCTCCAACTGAAT+GGG | 0.414167 | 5.2:-390835 | MS.gene40531:CDS |
| TACAGAGGTCTTCACATTGT+TGG | 0.426683 | 5.2:-391149 | MS.gene40531:CDS |
| GCATTCAATTAATTCAGAAC+TGG | 0.429146 | 5.2:-389894 | MS.gene40531:CDS |
| ATTCCGTTGCTAGCAGGAAC+AGG | 0.431465 | 5.2:-390864 | MS.gene40531:CDS |
| GCTGAAGTCGGGATGTTGAT+TGG | 0.436679 | 5.2:-390798 | MS.gene40531:CDS |
| GATGAGCTTTCAGCAAATAC+TGG | 0.438639 | 5.2:-390227 | MS.gene40531:CDS |
| ACCTTCTTGAAAACCCCAAA+AGG | 0.445470 | 5.2:+391322 | None:intergenic |
| ACAGAATCCTCAACTCCAAA+TGG | 0.446257 | 5.2:+391497 | None:intergenic |
| CAAGACAAGACCCTCTACTT+TGG | 0.447099 | 5.2:+389779 | None:intergenic |
| TATGAGCTCACCATTGCCTA+TGG | 0.458600 | 5.2:-389840 | MS.gene40531:CDS |
| TCCCTAAGAGAGCAGGAATA+CGG | 0.463074 | 5.2:+391198 | None:intergenic |
| CGGCGGTCCATTTGGAGTTG+AGG | 0.468150 | 5.2:-391504 | MS.gene40531:CDS |
| GTTGAGGATTCTGTTAGAAC+CGG | 0.475041 | 5.2:-391488 | MS.gene40531:CDS |
| AAGAACAAAGATAACAAGAA+AGG | 0.478885 | 5.2:+391088 | None:intergenic |
| CTTCTTGGAATGAGCAAGAT+GGG | 0.487711 | 5.2:-390684 | MS.gene40531:CDS |
| ATTAATTGAATGCCAACCAT+TGG | 0.487904 | 5.2:+389904 | None:intergenic |
| CCCGTATTCCTGCTCTCTTA+GGG | 0.496526 | 5.2:-391199 | MS.gene40531:CDS |
| TATTTGATTCCGTTGCTAGC+AGG | 0.499339 | 5.2:-390870 | MS.gene40531:CDS |
| AAGTAATCAAGAAACAAAAC+AGG | 0.501951 | 5.2:+391257 | None:intergenic |
| GGTCCTCTTCTATCCTTACT+CGG | 0.505486 | 5.2:-391461 | MS.gene40531:CDS |
| GCCGCTGCCATGTCTAACCT+TGG | 0.505741 | 5.2:-390744 | MS.gene40531:CDS |
| GACCTTGATGAGAATACAGC+TGG | 0.509598 | 5.2:+390654 | None:intergenic |
| TTCCAGCTGTATTCTCATCA+AGG | 0.510551 | 5.2:-390656 | MS.gene40531:intron |
| CTGGAGTTATCTTCTTGTCA+TGG | 0.515465 | 5.2:-390249 | MS.gene40531:CDS |
| GGCTAGTACTCTTGCAGGGG+AGG | 0.516455 | 5.2:-390958 | MS.gene40531:CDS |
| CCCTAAGAGAGCAGGAATAC+GGG | 0.517547 | 5.2:+391199 | None:intergenic |
| AGAACAAAGATAACAAGAAA+GGG | 0.517753 | 5.2:+391089 | None:intergenic |
| TTTCTGCTTCAAACAATCCA+AGG | 0.520360 | 5.2:+390727 | None:intergenic |
| ACTTCTTGGAATGAGCAAGA+TGG | 0.526526 | 5.2:-390685 | MS.gene40531:CDS |
| CCTCCAACTGAATGGGCTGA+TGG | 0.532272 | 5.2:-390828 | MS.gene40531:CDS |
| AGCAGGAGGCAAACAAAGCA+TGG | 0.533056 | 5.2:+390081 | None:intergenic |
| CTATAGCATATAAGAAATTG+AGG | 0.538180 | 5.2:+390200 | None:intergenic |
| AACGTGATCCCTAAGAGAGC+AGG | 0.540767 | 5.2:+391191 | None:intergenic |
| CAGGAATACGGGCTAGCATA+CGG | 0.541359 | 5.2:+391210 | None:intergenic |
| CTAATCTTCTACGAAGTCTC+CGG | 0.544287 | 5.2:-391524 | MS.gene40531:CDS |
| CCATCAGCCCATTCAGTTGG+AGG | 0.547465 | 5.2:+390828 | None:intergenic |
| GAGAATAAAATGCTAATAGT+CGG | 0.552107 | 5.2:+390277 | None:intergenic |
| TCAATTAATTCAGAACTGGT+TGG | 0.554226 | 5.2:-389890 | MS.gene40531:CDS |
| TCTTGGCTTGAACCAAGATA+GGG | 0.561433 | 5.2:+389972 | None:intergenic |
| CTCAACTCCAAATGGACCGC+CGG | 0.561696 | 5.2:+391505 | None:intergenic |
| TAACCATCAGCCCATTCAGT+TGG | 0.562028 | 5.2:+390825 | None:intergenic |
| CATCAGCCCATTCAGTTGGA+GGG | 0.563433 | 5.2:+390829 | None:intergenic |
| GAACATAGCCACCGTTGTGA+GGG | 0.565973 | 5.2:+391369 | None:intergenic |
| GACAATTCTTCTTCCACCAT+AGG | 0.566948 | 5.2:+389824 | None:intergenic |
| ATTGAATGCCAACCATTGGA+AGG | 0.568058 | 5.2:+389908 | None:intergenic |
| GTTTGGAACGGAACTCTGAA+AGG | 0.570334 | 5.2:+390115 | None:intergenic |
| TGTCATCACCTTCCAATGGT+TGG | 0.570626 | 5.2:-389916 | MS.gene40531:CDS |
| GTGGTTCTAATCCAAAGTAG+AGG | 0.573793 | 5.2:-389790 | None:intergenic |
| AGTGGAGCAGTAGTAATCGT+TGG | 0.575855 | 5.2:-390007 | MS.gene40531:CDS |
| CCTTCTTGAAAACCCCAAAA+GGG | 0.576626 | 5.2:+391323 | None:intergenic |
| ACTAAGCCGATGGTTTGTTG+TGG | 0.579545 | 5.2:-391048 | MS.gene40531:CDS |
| ATCAGCCCATTCAGTTGGAG+GGG | 0.581194 | 5.2:+390830 | None:intergenic |
| TCTTCTTCCACCATAGGCAA+TGG | 0.581759 | 5.2:+389830 | None:intergenic |
| ATAAGGCTAGTACTCTTGCA+GGG | 0.582318 | 5.2:-390962 | MS.gene40531:CDS |
| CAGCGGTGATGAGAGCTTCA+GGG | 0.582358 | 5.2:+391408 | None:intergenic |
| ACAAGAATAAGTAACAAAGC+AGG | 0.582392 | 5.2:+390064 | None:intergenic |
| TAAAATCCACAACAAACCAT+CGG | 0.594981 | 5.2:+391042 | None:intergenic |
| AAGGTTAGACATGGCAGCGG+CGG | 0.595108 | 5.2:+390746 | None:intergenic |
| AGAACATAGCCACCGTTGTG+AGG | 0.595254 | 5.2:+391368 | None:intergenic |
| ACTGGTTGGCCATGAAAACA+AGG | 0.596054 | 5.2:-389876 | MS.gene40531:CDS |
| GAAGTCGGGATGTTGATTGG+TGG | 0.598630 | 5.2:-390795 | MS.gene40531:CDS |
| TCCGTTCCAAACATTTGGTG+CGG | 0.599230 | 5.2:-390104 | MS.gene40531:CDS |
| TTTAATAACGTCAATTGGCG+TGG | 0.601030 | 5.2:-391023 | MS.gene40531:CDS |
| AAATTGGTTACTGTTTGAAG+CGG | 0.601450 | 5.2:-389945 | MS.gene40531:CDS |
| GAATTGTCTTTAATGCAAAG+TGG | 0.601773 | 5.2:-389809 | MS.gene40531:CDS |
| TCTGTAATTCAAATAAGTAA+GGG | 0.601990 | 5.2:+391166 | None:intergenic |
| CTTACTTATTTGAATTACAG+AGG | 0.605159 | 5.2:-391164 | MS.gene40531:CDS |
| GCCGCACCAAATGTTTGGAA+CGG | 0.607396 | 5.2:+390103 | None:intergenic |
| GAGCTCACCATTGCCTATGG+TGG | 0.608182 | 5.2:-389837 | MS.gene40531:CDS |
| CCAAAATCAGACTAAGCCGA+TGG | 0.608735 | 5.2:-391058 | MS.gene40531:CDS |
| GATTCTGTTAGAACCGGCGG+TGG | 0.609699 | 5.2:-391482 | MS.gene40531:CDS |
| GCACCTGTTCCTGCTAGCAA+CGG | 0.624624 | 5.2:+390861 | None:intergenic |
| TCAGGGACACTCCAAATGAG+AGG | 0.625273 | 5.2:+391425 | None:intergenic |
| AAGCCGAGTAAGGATAGAAG+AGG | 0.626094 | 5.2:+391458 | None:intergenic |
| TCCAAGGTTAGACATGGCAG+CGG | 0.631162 | 5.2:+390743 | None:intergenic |
| CAGGGACACTCCAAATGAGA+GGG | 0.634528 | 5.2:+391426 | None:intergenic |
| AAACTTTCTAGGTCTAAGCA+TGG | 0.636221 | 5.2:-390304 | MS.gene40531:intron |
| CAACTGTCATCACCTTCCAA+TGG | 0.639749 | 5.2:-389920 | MS.gene40531:CDS |
| GGATAGAAGAGGACCACCGC+CGG | 0.641963 | 5.2:+391469 | None:intergenic |
| GAGGATTCTGTTAGAACCGG+CGG | 0.644182 | 5.2:-391485 | MS.gene40531:CDS |
| TAGAAGATTAGAGCAATCAG+AGG | 0.645302 | 5.2:+391536 | None:intergenic |
| ATCTTCTACGAAGTCTCCGG+CGG | 0.650130 | 5.2:-391521 | MS.gene40531:CDS |
| AGAATAAGTAACAAAGCAGG+AGG | 0.650240 | 5.2:+390067 | None:intergenic |
| GAAAGTAGTGGCGAGTTCAG+CGG | 0.650242 | 5.2:+391391 | None:intergenic |
| AAACAATCCAAGGTTAGACA+TGG | 0.651742 | 5.2:+390737 | None:intergenic |
| CCAAAAGGGACCAAAAGCAG+AGG | 0.661685 | 5.2:+391337 | None:intergenic |
| GCCACTACTTTCCCTCACAA+CGG | 0.683972 | 5.2:-391380 | MS.gene40531:CDS |
| ACCGTTGTGAGGGAAAGTAG+TGG | 0.687593 | 5.2:+391379 | None:intergenic |
| TAAGGCTAGTACTCTTGCAG+GGG | 0.692679 | 5.2:-390961 | MS.gene40531:CDS |
| ACTACTTTCCCTCACAACGG+TGG | 0.702831 | 5.2:-391377 | MS.gene40531:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATTGTATATAAGCAATA+TGG | - | chr5.2:390874-390893 | MS.gene40531:CDS | 20.0% |
| !! | TATTAATTGCTTGAACAAAA+AGG | - | chr5.2:391019-391038 | MS.gene40531:CDS | 20.0% |
| !! | TCAATTTCTTATATGCTATA+GGG | - | chr5.2:391179-391198 | MS.gene40531:CDS | 20.0% |
| !! | TCTGTAATTCAAATAAGTAA+GGG | + | chr5.2:390214-390233 | None:intergenic | 20.0% |
| !!! | GTTTTGGAATTTGAATTATT+GGG | - | chr5.2:390392-390411 | MS.gene40531:intron | 20.0% |
| !!! | TATCTGTTTTGAAAAATAGA+TGG | - | chr5.2:390898-390917 | MS.gene40531:CDS | 20.0% |
| !!! | TGTTTTGGAATTTGAATTAT+TGG | - | chr5.2:390391-390410 | MS.gene40531:intron | 20.0% |
| ! | AAAGGGTAAAAGTGAAAAAA+TGG | + | chr5.2:390274-390293 | None:intergenic | 25.0% |
| ! | AAGAACAAAGATAACAAGAA+AGG | + | chr5.2:390292-390311 | None:intergenic | 25.0% |
| ! | AAGTAATCAAGAAACAAAAC+AGG | + | chr5.2:390123-390142 | None:intergenic | 25.0% |
| ! | AGAACAAAGATAACAAGAAA+GGG | + | chr5.2:390291-390310 | None:intergenic | 25.0% |
| ! | ATTTGAACTTCATCCTTAAA+AGG | - | chr5.2:390924-390943 | MS.gene40531:CDS | 25.0% |
| ! | CTATAGCATATAAGAAATTG+AGG | + | chr5.2:391180-391199 | None:intergenic | 25.0% |
| ! | CTCAATTTCTTATATGCTAT+AGG | - | chr5.2:391178-391197 | MS.gene40531:CDS | 25.0% |
| ! | CTCTGTAATTCAAATAAGTA+AGG | + | chr5.2:390215-390234 | None:intergenic | 25.0% |
| ! | CTTACTTATTTGAATTACAG+AGG | - | chr5.2:390213-390232 | MS.gene40531:CDS | 25.0% |
| ! | GAATTTGAATTATTGGGATA+AGG | - | chr5.2:390398-390417 | MS.gene40531:intron | 25.0% |
| ! | GAGAATAAAATGCTAATAGT+CGG | + | chr5.2:391103-391122 | None:intergenic | 25.0% |
| ! | TAAAAGAAAGATACCATACA+AGG | + | chr5.2:390852-390871 | None:intergenic | 25.0% |
| ! | TTCAAGCCAAGAATAAAAAT+TGG | - | chr5.2:391416-391435 | MS.gene40531:CDS | 25.0% |
| ! | TTTGAACTTCATCCTTAAAA+GGG | - | chr5.2:390925-390944 | MS.gene40531:CDS | 25.0% |
| !! | CAGTAACCAATTTTTATTCT+TGG | + | chr5.2:391425-391444 | None:intergenic | 25.0% |
| !! | GTTACTTCAATAACATGTTT+TGG | - | chr5.2:390376-390395 | MS.gene40531:intron | 25.0% |
| !!! | ATTTAGTTTCATTTTCTACC+TGG | + | chr5.2:390800-390819 | None:intergenic | 25.0% |
| !!! | TGGATTTTAATAACGTCAAT+TGG | - | chr5.2:390349-390368 | MS.gene40531:intron | 25.0% |
| !!! | TTTAGTTTCATTTTCTACCT+GGG | + | chr5.2:390799-390818 | None:intergenic | 25.0% |
| AAATTGGTTACTGTTTGAAG+CGG | - | chr5.2:391432-391451 | MS.gene40531:CDS | 30.0% | |
| ACAAGAATAAGTAACAAAGC+AGG | + | chr5.2:391316-391335 | None:intergenic | 30.0% | |
| ATTAATTGAATGCCAACCAT+TGG | + | chr5.2:391476-391495 | None:intergenic | 30.0% | |
| ATTTATCTTGTACCCTATCT+TGG | - | chr5.2:391393-391412 | MS.gene40531:CDS | 30.0% | |
| CATACGGTTAAAAATAGGAA+AGG | + | chr5.2:390154-390173 | None:intergenic | 30.0% | |
| CTGAAAGGTCTATAAAGATT+TGG | + | chr5.2:391250-391269 | None:intergenic | 30.0% | |
| GAATTGTCTTTAATGCAAAG+TGG | - | chr5.2:391568-391587 | MS.gene40531:CDS | 30.0% | |
| GCATTCAATTAATTCAGAAC+TGG | - | chr5.2:391483-391502 | MS.gene40531:CDS | 30.0% | |
| TAAAATCCACAACAAACCAT+CGG | + | chr5.2:390338-390357 | None:intergenic | 30.0% | |
| TCAATTAATTCAGAACTGGT+TGG | - | chr5.2:391487-391506 | MS.gene40531:CDS | 30.0% | |
| TGTGGTACTATAAACTTTCT+AGG | - | chr5.2:391062-391081 | MS.gene40531:CDS | 30.0% | |
| TTGAACTTCATCCTTAAAAG+GGG | - | chr5.2:390926-390945 | MS.gene40531:CDS | 30.0% | |
| ! | ACTTATTCTTGTTATGTGTC+TGG | - | chr5.2:391324-391343 | MS.gene40531:CDS | 30.0% |
| !! | TTCAAGAAGGTTTTTGGAAA+TGG | - | chr5.2:390067-390086 | MS.gene40531:CDS | 30.0% |
| !!! | AGAGGTAATAAGGTTAGTTT+TGG | + | chr5.2:389826-389845 | None:intergenic | 30.0% |
| AAACAATCCAAGGTTAGACA+TGG | + | chr5.2:390643-390662 | None:intergenic | 35.0% | |
| AAACTTTCTAGGTCTAAGCA+TGG | - | chr5.2:391073-391092 | MS.gene40531:CDS | 35.0% | |
| AAAGATACCATACAAGGAGA+GGG | + | chr5.2:390846-390865 | None:intergenic | 35.0% | |
| ACAGTGATCTAACATTGATG+TGG | - | chr5.2:391044-391063 | MS.gene40531:CDS | 35.0% | |
| ACCACTCACTTAAGACTAAA+TGG | + | chr5.2:390975-390994 | None:intergenic | 35.0% | |
| AGAATAAGTAACAAAGCAGG+AGG | + | chr5.2:391313-391332 | None:intergenic | 35.0% | |
| CTCACTTAAGACTAAATGGT+AGG | + | chr5.2:390971-390990 | None:intergenic | 35.0% | |
| GCTAGCATACGGTTAAAAAT+AGG | + | chr5.2:390159-390178 | None:intergenic | 35.0% | |
| TAGAAGATTAGAGCAATCAG+AGG | + | chr5.2:389844-389863 | None:intergenic | 35.0% | |
| TAGAGCAATCAGAGGTAATA+AGG | + | chr5.2:389836-389855 | None:intergenic | 35.0% | |
| TTGAGAACGTTCTTTGTAAG+TGG | - | chr5.2:391352-391371 | MS.gene40531:CDS | 35.0% | |
| TTTAATAACGTCAATTGGCG+TGG | - | chr5.2:390354-390373 | MS.gene40531:intron | 35.0% | |
| TTTCTGCTTCAAACAATCCA+AGG | + | chr5.2:390653-390672 | None:intergenic | 35.0% | |
| ! | AGCATTTTATTCTCTGCAAC+TGG | - | chr5.2:391109-391128 | MS.gene40531:CDS | 35.0% |
| ! | AGTGATGCTTTTCAACTTCT+TGG | - | chr5.2:390678-390697 | MS.gene40531:CDS | 35.0% |
| ! | GAAATGGTTTAGTGGTGTTA+TGG | - | chr5.2:390083-390102 | MS.gene40531:CDS | 35.0% |
| ! | TCTTCTTTTTCCCTCTCATT+TGG | - | chr5.2:389941-389960 | MS.gene40531:CDS | 35.0% |
| !! | ACCATTTAGTCTTAAGTGAG+TGG | - | chr5.2:390971-390990 | MS.gene40531:CDS | 35.0% |
| !! | ATGGTTATTTTGCTGAAGTC+GGG | - | chr5.2:390568-390587 | MS.gene40531:intron | 35.0% |
| !! | GATGGTTATTTTGCTGAAGT+CGG | - | chr5.2:390567-390586 | MS.gene40531:intron | 35.0% |
| !! | GGTTTTTGGAAATGGTTTAG+TGG | - | chr5.2:390075-390094 | MS.gene40531:CDS | 35.0% |
| !!! | GTTTCCCAAAGCACTTTTTT+GGG | - | chr5.2:390461-390480 | MS.gene40531:intron | 35.0% |
| !!! | TTTCCCAAAGCACTTTTTTG+GGG | - | chr5.2:390462-390481 | MS.gene40531:intron | 35.0% |
| ACAGAATCCTCAACTCCAAA+TGG | + | chr5.2:389883-389902 | None:intergenic | 40.0% | |
| ACCTTCTTGAAAACCCCAAA+AGG | + | chr5.2:390058-390077 | None:intergenic | 40.0% | |
| ACTTCTTGGAATGAGCAAGA+TGG | - | chr5.2:390692-390711 | MS.gene40531:CDS | 40.0% | |
| AGAGTTCCGTTCCAAACATT+TGG | - | chr5.2:391268-391287 | MS.gene40531:CDS | 40.0% | |
| ATAAGGCTAGTACTCTTGCA+GGG | - | chr5.2:390415-390434 | MS.gene40531:intron | 40.0% | |
| ATTGAATGCCAACCATTGGA+AGG | + | chr5.2:391472-391491 | None:intergenic | 40.0% | |
| CCTTAAAAGGGGATTTGTAG+TGG | - | chr5.2:390937-390956 | MS.gene40531:CDS | 40.0% | |
| CCTTCTTGAAAACCCCAAAA+GGG | + | chr5.2:390057-390076 | None:intergenic | 40.0% | |
| CTAATCTTCTACGAAGTCTC+CGG | - | chr5.2:389853-389872 | MS.gene40531:CDS | 40.0% | |
| CTGGAGTTATCTTCTTGTCA+TGG | - | chr5.2:391128-391147 | MS.gene40531:CDS | 40.0% | |
| CTTCTTGGAATGAGCAAGAT+GGG | - | chr5.2:390693-390712 | MS.gene40531:CDS | 40.0% | |
| GAAAAAGAAGAAGCCGAGTA+AGG | + | chr5.2:389932-389951 | None:intergenic | 40.0% | |
| GAAAGATACCATACAAGGAG+AGG | + | chr5.2:390847-390866 | None:intergenic | 40.0% | |
| GACAATTCTTCTTCCACCAT+AGG | + | chr5.2:391556-391575 | None:intergenic | 40.0% | |
| GATGAGCTTTCAGCAAATAC+TGG | - | chr5.2:391150-391169 | MS.gene40531:CDS | 40.0% | |
| GTTGAGGATTCTGTTAGAAC+CGG | - | chr5.2:389889-389908 | MS.gene40531:CDS | 40.0% | |
| TACAGAGGTCTTCACATTGT+TGG | - | chr5.2:390228-390247 | MS.gene40531:CDS | 40.0% | |
| TATTTGATTCCGTTGCTAGC+AGG | - | chr5.2:390507-390526 | MS.gene40531:intron | 40.0% | |
| TTCCAGCTGTATTCTCATCA+AGG | - | chr5.2:390721-390740 | MS.gene40531:CDS | 40.0% | |
| ! | CCACTACAAATCCCCTTTTA+AGG | + | chr5.2:390940-390959 | None:intergenic | 40.0% |
| ! | CTTTGGATATCCTCTGCTTT+TGG | - | chr5.2:390030-390049 | MS.gene40531:CDS | 40.0% |
| ! | TCTTGGCTTGAACCAAGATA+GGG | + | chr5.2:391408-391427 | None:intergenic | 40.0% |
| ! | TTCTTGGCTTGAACCAAGAT+AGG | + | chr5.2:391409-391428 | None:intergenic | 40.0% |
| !! | ATCCCCCAAAAAAGTGCTTT+GGG | + | chr5.2:390468-390487 | None:intergenic | 40.0% |
| !! | GGATGTTGATTGGTGGTTTT+TGG | - | chr5.2:390589-390608 | MS.gene40531:intron | 40.0% |
| !! | GGGGTTTTCAAGAAGGTTTT+TGG | - | chr5.2:390061-390080 | MS.gene40531:CDS | 40.0% |
| !!! | ACTTTTTTGGGGGATGCTTT+TGG | - | chr5.2:390473-390492 | MS.gene40531:intron | 40.0% |
| !!! | CATCGGCTTAGTCTGATTTT+GGG | + | chr5.2:390321-390340 | None:intergenic | 40.0% |
| !!! | CGTTTCCCAAAGCACTTTTT+TGG | - | chr5.2:390460-390479 | MS.gene40531:intron | 40.0% |
| !!! | GCTTTGGGAAACGTTTTACT+TGG | + | chr5.2:390453-390472 | None:intergenic | 40.0% |
| !!! | GTGGTTTTTGGCTTAAACTG+TGG | - | chr5.2:390601-390620 | MS.gene40531:intron | 40.0% |
| !!! | TTCCCAAAGCACTTTTTTGG+GGG | - | chr5.2:390463-390482 | MS.gene40531:intron | 40.0% |
| AAGCCGAGTAAGGATAGAAG+AGG | + | chr5.2:389922-389941 | None:intergenic | 45.0% | |
| ACAACGGTGGCTATGTTCTT+TGG | - | chr5.2:390013-390032 | MS.gene40531:CDS | 45.0% | |
| AGTGGAGCAGTAGTAATCGT+TGG | - | chr5.2:391370-391389 | MS.gene40531:CDS | 45.0% | |
| ATACCCTCTTTCTCTTTCCC+AGG | - | chr5.2:390779-390798 | MS.gene40531:CDS | 45.0% | |
| CAACTGTCATCACCTTCCAA+TGG | - | chr5.2:391457-391476 | MS.gene40531:CDS | 45.0% | |
| CCAAAATCAGACTAAGCCGA+TGG | - | chr5.2:390319-390338 | MS.gene40531:intron | 45.0% | |
| CTACCTGGGAAAGAGAAAGA+GGG | + | chr5.2:390785-390804 | None:intergenic | 45.0% | |
| GACCTTGATGAGAATACAGC+TGG | + | chr5.2:390726-390745 | None:intergenic | 45.0% | |
| GATAAGGCTAGTACTCTTGC+AGG | - | chr5.2:390414-390433 | MS.gene40531:intron | 45.0% | |
| GGTCCTCTTCTATCCTTACT+CGG | - | chr5.2:389916-389935 | MS.gene40531:CDS | 45.0% | |
| TAACCATCAGCCCATTCAGT+TGG | + | chr5.2:390555-390574 | None:intergenic | 45.0% | |
| TAAGGCTAGTACTCTTGCAG+GGG | - | chr5.2:390416-390435 | MS.gene40531:intron | 45.0% | |
| TATGAGCTCACCATTGCCTA+TGG | - | chr5.2:391537-391556 | MS.gene40531:CDS | 45.0% | |
| TCCCTAAGAGAGCAGGAATA+CGG | + | chr5.2:390182-390201 | None:intergenic | 45.0% | |
| TCTACCTGGGAAAGAGAAAG+AGG | + | chr5.2:390786-390805 | None:intergenic | 45.0% | |
| TCTTCTTCCACCATAGGCAA+TGG | + | chr5.2:391550-391569 | None:intergenic | 45.0% | |
| TGTCATCACCTTCCAATGGT+TGG | - | chr5.2:391461-391480 | MS.gene40531:CDS | 45.0% | |
| TGTGATACCCTCTCCTTGTA+TGG | - | chr5.2:390836-390855 | MS.gene40531:CDS | 45.0% | |
| ! | ACTGGTTGGCCATGAAAACA+AGG | - | chr5.2:391501-391520 | MS.gene40531:CDS | 45.0% |
| ! | GTTTGGAACGGAACTCTGAA+AGG | + | chr5.2:391265-391284 | None:intergenic | 45.0% |
| ! | TCCGTTCCAAACATTTGGTG+CGG | - | chr5.2:391273-391292 | MS.gene40531:CDS | 45.0% |
| !! | ACTAAGCCGATGGTTTGTTG+TGG | - | chr5.2:390329-390348 | MS.gene40531:intron | 45.0% |
| !! | CATCCCCCAAAAAAGTGCTT+TGG | + | chr5.2:390469-390488 | None:intergenic | 45.0% |
| !! | CTCTGCTTTTGGTCCCTTTT+GGG | - | chr5.2:390041-390060 | MS.gene40531:CDS | 45.0% |
| !! | TCTGCTTTTGGTCCCTTTTG+GGG | - | chr5.2:390042-390061 | MS.gene40531:CDS | 45.0% |
| !! | TTTTTGGGGGATGCTTTTGG+TGG | - | chr5.2:390476-390495 | MS.gene40531:intron | 45.0% |
| !!! | CCATCGGCTTAGTCTGATTT+TGG | + | chr5.2:390322-390341 | None:intergenic | 45.0% |
| !!! | CCCTTTTGGGGTTTTCAAGA+AGG | - | chr5.2:390054-390073 | MS.gene40531:CDS | 45.0% |
| !!! | GCTCTGTGTCCTTGTTTTCA+TGG | + | chr5.2:391513-391532 | None:intergenic | 45.0% |
| AACGTGATCCCTAAGAGAGC+AGG | + | chr5.2:390189-390208 | None:intergenic | 50.0% | |
| ACCGTTGTGAGGGAAAGTAG+TGG | + | chr5.2:390001-390020 | None:intergenic | 50.0% | |
| ACTACTTTCCCTCACAACGG+TGG | - | chr5.2:390000-390019 | MS.gene40531:CDS | 50.0% | |
| AGAACATAGCCACCGTTGTG+AGG | + | chr5.2:390012-390031 | None:intergenic | 50.0% | |
| AGCAGGAGGCAAACAAAGCA+TGG | + | chr5.2:391299-391318 | None:intergenic | 50.0% | |
| ATCAGCCCATTCAGTTGGAG+GGG | + | chr5.2:390550-390569 | None:intergenic | 50.0% | |
| ATCTTCTACGAAGTCTCCGG+CGG | - | chr5.2:389856-389875 | MS.gene40531:CDS | 50.0% | |
| ATTCCGTTGCTAGCAGGAAC+AGG | - | chr5.2:390513-390532 | MS.gene40531:intron | 50.0% | |
| CAGGGACACTCCAAATGAGA+GGG | + | chr5.2:389954-389973 | None:intergenic | 50.0% | |
| CATCAGCCCATTCAGTTGGA+GGG | + | chr5.2:390551-390570 | None:intergenic | 50.0% | |
| CCAAAAGGGACCAAAAGCAG+AGG | + | chr5.2:390043-390062 | None:intergenic | 50.0% | |
| CCCGTATTCCTGCTCTCTTA+GGG | - | chr5.2:390178-390197 | MS.gene40531:CDS | 50.0% | |
| CCCTAAGAGAGCAGGAATAC+GGG | + | chr5.2:390181-390200 | None:intergenic | 50.0% | |
| GAAAGTAGTGGCGAGTTCAG+CGG | + | chr5.2:389989-390008 | None:intergenic | 50.0% | |
| GAACATAGCCACCGTTGTGA+GGG | + | chr5.2:390011-390030 | None:intergenic | 50.0% | |
| GAGGATTCTGTTAGAACCGG+CGG | - | chr5.2:389892-389911 | MS.gene40531:CDS | 50.0% | |
| GAGTTCCCCTCCAACTGAAT+GGG | - | chr5.2:390542-390561 | MS.gene40531:intron | 50.0% | |
| GCCACTACTTTCCCTCACAA+CGG | - | chr5.2:389997-390016 | MS.gene40531:CDS | 50.0% | |
| GCCGCACCAAATGTTTGGAA+CGG | + | chr5.2:391277-391296 | None:intergenic | 50.0% | |
| GCTGAAGTCGGGATGTTGAT+TGG | - | chr5.2:390579-390598 | MS.gene40531:intron | 50.0% | |
| TCAGGGACACTCCAAATGAG+AGG | + | chr5.2:389955-389974 | None:intergenic | 50.0% | |
| TCCAAGGTTAGACATGGCAG+CGG | + | chr5.2:390637-390656 | None:intergenic | 50.0% | |
| TGAGTTCCCCTCCAACTGAA+TGG | - | chr5.2:390541-390560 | MS.gene40531:intron | 50.0% | |
| ! | GAAGTCGGGATGTTGATTGG+TGG | - | chr5.2:390582-390601 | MS.gene40531:intron | 50.0% |
| !! | CAGGAATACGGGCTAGCATA+CGG | + | chr5.2:390170-390189 | None:intergenic | 50.0% |
| !! | CCTCTGCTTTTGGTCCCTTT+TGG | - | chr5.2:390040-390059 | MS.gene40531:CDS | 50.0% |
| AAGGTTAGACATGGCAGCGG+CGG | + | chr5.2:390634-390653 | None:intergenic | 55.0% | |
| CAGCGGTGATGAGAGCTTCA+GGG | + | chr5.2:389972-389991 | None:intergenic | 55.0% | |
| CCATCAGCCCATTCAGTTGG+AGG | + | chr5.2:390552-390571 | None:intergenic | 55.0% | |
| CTCAACTCCAAATGGACCGC+CGG | + | chr5.2:389875-389894 | None:intergenic | 55.0% | |
| GAGCTCACCATTGCCTATGG+TGG | - | chr5.2:391540-391559 | MS.gene40531:CDS | 55.0% | |
| GATTCTGTTAGAACCGGCGG+TGG | - | chr5.2:389895-389914 | MS.gene40531:CDS | 55.0% | |
| GCACCTGTTCCTGCTAGCAA+CGG | + | chr5.2:390519-390538 | None:intergenic | 55.0% | |
| GCATGGCCGCACCAAATGTT+TGG | + | chr5.2:391282-391301 | None:intergenic | 55.0% | |
| GCCCGTATTCCTGCTCTCTT+AGG | - | chr5.2:390177-390196 | MS.gene40531:CDS | 55.0% | |
| TCAGCGGTGATGAGAGCTTC+AGG | + | chr5.2:389973-389992 | None:intergenic | 55.0% | |
| !! | CCTCCAACTGAATGGGCTGA+TGG | - | chr5.2:390549-390568 | MS.gene40531:intron | 55.0% |
| GAAGTCTCCGGCGGTCCATT+TGG | - | chr5.2:389865-389884 | MS.gene40531:CDS | 60.0% | |
| GCCGCTGCCATGTCTAACCT+TGG | - | chr5.2:390633-390652 | MS.gene40531:intron | 60.0% | |
| GGATAGAAGAGGACCACCGC+CGG | + | chr5.2:389911-389930 | None:intergenic | 60.0% | |
| GGCTAGTACTCTTGCAGGGG+AGG | - | chr5.2:390419-390438 | MS.gene40531:intron | 60.0% | |
| ! | CGGCGGTCCATTTGGAGTTG+AGG | - | chr5.2:389873-389892 | MS.gene40531:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 389793 | 391606 | 389793 | ID=MS.gene40531 |
| chr5.2 | mRNA | 389793 | 391606 | 389793 | ID=MS.gene40531.t1;Parent=MS.gene40531 |
| chr5.2 | exon | 390657 | 391606 | 390657 | ID=MS.gene40531.t1.exon1;Parent=MS.gene40531.t1 |
| chr5.2 | CDS | 390657 | 391606 | 390657 | ID=cds.MS.gene40531.t1;Parent=MS.gene40531.t1 |
| chr5.2 | exon | 389793 | 390315 | 389793 | ID=MS.gene40531.t1.exon2;Parent=MS.gene40531.t1 |
| chr5.2 | CDS | 389793 | 390315 | 389793 | ID=cds.MS.gene40531.t1;Parent=MS.gene40531.t1 |
| Gene Sequence |
| Protein sequence |
