AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40928

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40928.t1 MTR_3g096840 97.723 483 10 1 1 482 1 483 0.0 964
MS.gene40928.t1 MTR_8g094290 68.736 451 141 0 31 481 24 474 0.0 668
MS.gene40928.t1 MTR_3g096830 70.130 462 136 1 19 480 7 466 0.0 658
MS.gene40928.t1 MTR_3g096800 66.180 479 157 2 1 479 1 474 0.0 658
MS.gene40928.t1 MTR_3g088455 60.707 481 180 4 1 478 1 475 0.0 611
MS.gene40928.t1 MTR_4g073520 61.339 463 170 2 28 481 49 511 0.0 606
MS.gene40928.t1 MTR_4g073520 61.339 463 170 2 28 481 49 511 0.0 606
MS.gene40928.t1 MTR_1g029750 61.088 478 180 3 5 478 4 479 0.0 594
MS.gene40928.t1 MTR_3g088475 59.834 483 184 5 1 479 1 477 0.0 594
MS.gene40928.t1 MTR_3g110660 54.430 474 210 4 11 478 5 478 0.0 521
MS.gene40928.t1 MTR_1g007380 53.829 457 206 3 27 478 12 468 1.04e-180 514
MS.gene40928.t1 MTR_1g105980 53.105 467 213 4 20 481 5 470 4.83e-178 508
MS.gene40928.t1 MTR_1g105995 51.282 468 222 4 17 479 1 467 1.90e-174 498
MS.gene40928.t1 MTR_1g105990 53.846 455 202 4 27 473 10 464 7.91e-173 494
MS.gene40928.t1 MTR_1g106000 52.193 456 204 4 37 478 14 469 7.86e-169 484
MS.gene40928.t1 MTR_3g088465 60.513 390 144 5 1 386 1 384 4.20e-166 475
MS.gene40928.t1 MTR_3g461440 51.247 441 210 2 31 468 16 454 8.26e-165 474
MS.gene40928.t1 MTR_3g461470 51.474 441 209 2 31 468 16 454 2.24e-163 470
MS.gene40928.t1 MTR_5g096840 50.459 436 210 3 37 468 28 461 3.70e-159 459
MS.gene40928.t1 MTR_3g061390 50.113 441 215 2 31 468 16 454 1.33e-158 458
MS.gene40928.t1 MTR_3g461430 51.259 437 208 3 35 468 27 461 2.70e-158 459
MS.gene40928.t1 MTR_3g461480 49.115 452 220 4 20 467 9 454 1.71e-150 437
MS.gene40928.t1 MTR_3g110420 47.046 457 237 3 26 478 12 467 2.66e-149 434
MS.gene40928.t1 MTR_1g007270 46.930 456 232 4 26 478 21 469 1.86e-148 432
MS.gene40928.t1 MTR_1g007180 46.018 452 237 4 32 479 6 454 2.92e-147 429
MS.gene40928.t1 MTR_1g007240 46.018 452 237 4 32 479 6 454 7.63e-146 425
MS.gene40928.t1 MTR_2g031750 46.358 453 236 4 31 479 5 454 5.34e-145 423
MS.gene40928.t1 MTR_3g110430 46.154 455 240 3 27 478 50 502 3.18e-134 397
MS.gene40928.t1 MTR_5g096850 43.349 436 241 3 37 468 24 457 9.48e-134 394
MS.gene40928.t1 MTR_3g110660 57.576 330 137 3 19 345 13 342 1.10e-129 381
MS.gene40928.t1 MTR_3g461440 51.572 318 149 2 154 468 2 317 3.50e-117 347
MS.gene40928.t1 MTR_2g031750 43.229 384 211 4 100 479 7 387 1.04e-108 328
MS.gene40928.t1 MTR_5g017200 59.567 277 97 5 6 281 2 264 7.39e-102 306
MS.gene40928.t1 MTR_3g110420 48.571 315 161 1 32 345 18 332 1.21e-100 305
MS.gene40928.t1 MTR_1g007180 42.857 301 165 4 183 479 73 370 2.58e-83 262
MS.gene40928.t1 MTR_6g022790 28.889 450 276 11 38 479 42 455 1.48e-43 160
MS.gene40928.t1 MTR_2g101920 30.120 415 243 12 39 443 48 425 1.05e-42 157
MS.gene40928.t1 MTR_1g007190 42.081 221 91 5 48 268 20 203 3.29e-42 149
MS.gene40928.t1 MTR_8g080120 27.902 448 281 12 39 479 24 436 4.00e-42 155
MS.gene40928.t1 MTR_4g103890 28.989 445 274 10 39 476 11 420 1.46e-40 151
MS.gene40928.t1 MTR_5g054730 30.679 427 250 13 27 445 17 405 6.11e-39 147
MS.gene40928.t1 MTR_1g070470 26.872 454 293 12 32 478 16 437 1.86e-38 145
MS.gene40928.t1 MTR_6g023075 29.821 446 276 10 39 479 15 428 2.75e-35 136
MS.gene40928.t1 MTR_6g022780 29.821 446 276 10 39 479 15 428 6.29e-35 135
MS.gene40928.t1 MTR_7g038910 31.003 329 201 8 39 361 31 339 1.31e-33 130
MS.gene40928.t1 MTR_2g096830 29.372 446 280 8 38 479 14 428 1.43e-33 132
MS.gene40928.t1 MTR_7g038910 30.655 336 193 9 39 361 31 339 1.83e-33 130
MS.gene40928.t1 MTR_6g023065 28.571 469 291 12 20 479 30 463 3.50e-33 131
MS.gene40928.t1 MTR_7g038910 28.194 454 272 11 39 479 31 443 4.62e-33 130
MS.gene40928.t1 MTR_3g005740 28.381 451 279 12 39 479 53 469 7.01e-33 130
MS.gene40928.t1 MTR_1g093020 28.472 432 265 13 27 450 13 408 3.65e-32 127
MS.gene40928.t1 MTR_1g492640 26.608 451 285 17 44 481 64 481 7.32e-32 127
MS.gene40928.t1 MTR_1g093020 28.571 427 261 13 27 445 13 403 9.44e-32 127
MS.gene40928.t1 MTR_4g055610 26.941 438 270 16 20 440 17 421 2.05e-31 126
MS.gene40928.t1 MTR_2g096830 30.278 360 216 8 38 393 14 342 4.67e-31 123
MS.gene40928.t1 MTR_1g093030 27.111 450 284 11 34 475 20 433 3.66e-30 122
MS.gene40928.t1 MTR_3g085820 27.806 392 234 11 26 401 10 368 5.57e-30 120
MS.gene40928.t1 MTR_0531s0020 30.435 322 202 7 38 355 49 352 6.40e-29 117
MS.gene40928.t1 MTR_8g099320 23.899 477 312 16 20 479 6 448 5.10e-26 110
MS.gene40928.t1 MTR_4g075750 24.729 461 295 14 39 477 71 501 4.39e-22 99.4
MS.gene40928.t1 MTR_1g492640 27.187 320 200 13 44 351 46 344 3.29e-21 95.5
MS.gene40928.t1 MTR_1g492640 27.187 320 200 13 44 351 64 362 4.74e-21 95.1
MS.gene40928.t1 MTR_1g492640 26.374 364 225 14 127 479 16 347 6.95e-21 94.4
MS.gene40928.t1 MTR_5g081630 26.128 421 258 16 69 479 4 381 1.74e-19 90.5
MS.gene40928.t1 MTR_3g115090 22.560 461 309 13 26 468 68 498 1.88e-19 91.7
MS.gene40928.t1 MTR_5g023260 23.570 437 286 12 39 459 108 512 1.10e-16 83.2
MS.gene40928.t1 MTR_3g069960 25.061 407 250 15 84 479 72 434 7.13e-15 77.0
MS.gene40928.t1 MTR_3g069960 25.061 407 250 15 84 479 19 381 1.36e-14 75.9
MS.gene40928.t1 MTR_5g023240 23.488 430 280 12 39 452 87 483 2.85e-14 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40928.t1 AT5G09220 65.639 454 152 2 29 478 36 489 0.0 644
MS.gene40928.t1 AT5G63850 63.676 457 162 2 29 481 9 465 0.0 628
MS.gene40928.t1 AT1G77380 65.419 454 154 1 28 478 19 472 0.0 618
MS.gene40928.t1 AT1G44100 61.638 464 167 4 26 479 15 477 0.0 611
MS.gene40928.t1 AT1G10010 52.863 454 210 2 29 478 18 471 0.0 516
MS.gene40928.t1 AT1G10010 52.863 454 210 2 29 478 19 472 0.0 516
MS.gene40928.t1 AT1G58360 53.027 479 214 4 4 478 9 480 4.47e-180 513
MS.gene40928.t1 AT5G49630 54.585 458 202 4 28 479 22 479 1.93e-177 506
MS.gene40928.t1 AT5G23810 46.753 462 236 5 15 468 2 461 4.09e-136 401
MS.gene40928.t1 AT5G23810 47.493 339 173 3 15 350 2 338 4.94e-100 305
MS.gene40928.t1 AT5G23810 44.747 257 137 3 15 268 2 256 2.33e-67 217
MS.gene40928.t1 AT5G23810 43.541 209 115 2 15 220 2 210 7.73e-51 173
MS.gene40928.t1 AT5G23810 43.541 209 115 2 15 220 2 210 7.73e-51 173
MS.gene40928.t1 AT5G40780 28.378 444 284 9 39 479 34 446 3.21e-43 159
MS.gene40928.t1 AT1G48640 28.788 462 291 10 24 479 24 453 2.11e-42 156
MS.gene40928.t1 AT5G40780 28.205 429 274 9 54 479 1 398 1.48e-39 147
MS.gene40928.t1 AT5G40780 28.205 429 274 9 54 479 1 398 1.48e-39 147
MS.gene40928.t1 AT1G24400 29.139 453 269 12 39 479 29 441 4.90e-39 147
MS.gene40928.t1 AT1G67640 29.464 448 274 10 39 479 29 441 1.37e-37 143
MS.gene40928.t1 AT3G01760 26.724 464 303 11 19 474 8 442 1.95e-36 140
MS.gene40928.t1 AT1G71680 29.130 460 289 10 26 479 20 448 7.41e-35 135
MS.gene40928.t1 AT1G61270 28.670 436 267 11 39 465 34 434 8.72e-35 135
MS.gene40928.t1 AT1G71680 31.672 341 210 9 26 360 20 343 3.76e-32 126
MS.gene40928.t1 AT1G25530 28.054 442 269 13 38 467 27 431 2.67e-30 122
MS.gene40928.t1 AT1G08230 25.885 452 298 12 37 479 26 449 2.70e-27 114
MS.gene40928.t1 AT5G41800 24.672 458 295 16 37 479 25 447 2.47e-23 102
MS.gene40928.t1 AT3G55740 25.167 449 279 18 44 479 33 437 6.47e-21 95.5
MS.gene40928.t1 AT3G55740 25.416 421 261 16 69 479 4 381 7.14e-21 94.7
MS.gene40928.t1 AT3G55740 25.416 421 261 16 69 479 4 381 7.14e-21 94.7
MS.gene40928.t1 AT1G08230 28.526 312 199 7 174 479 37 330 2.12e-20 92.4
MS.gene40928.t1 AT1G08230 28.526 312 199 7 174 479 37 330 2.12e-20 92.4
MS.gene40928.t1 AT1G08230 28.526 312 199 7 174 479 37 330 2.12e-20 92.4
MS.gene40928.t1 AT1G08230 28.846 312 198 8 174 479 56 349 2.98e-20 92.4
MS.gene40928.t1 AT2G36590 25.126 398 245 16 44 430 30 385 3.48e-19 90.1
MS.gene40928.t1 AT2G39890 23.142 471 313 17 17 479 11 440 4.29e-19 90.1
MS.gene40928.t1 AT2G39890 23.142 471 313 17 17 479 11 440 4.29e-19 90.1
MS.gene40928.t1 AT2G39890 23.501 417 274 14 69 479 4 381 6.29e-18 85.9
MS.gene40928.t1 AT4G35180 23.077 442 293 10 21 444 30 442 7.53e-12 67.8

Find 106 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGAATTCTCTGTCAATTT+TGG 0.067119 3.2:+80781442 None:intergenic
TGATTGGGGCATTGGGATTT+TGG 0.112131 3.2:-80781295 MS.gene40928:CDS
ATCCACTTCCTACTCCATTT+TGG 0.128680 3.2:+80781221 None:intergenic
CGTTGTGGTGACACCGAATT+TGG 0.176572 3.2:-80784220 MS.gene40928:CDS
GCCATCATCGTCATAGTATT+TGG 0.231930 3.2:+80784512 None:intergenic
CTTTCTCGACGAAGGCAAAT+AGG 0.260797 3.2:+80781483 None:intergenic
GCTCAGATGGGTTGGATTGC+TGG 0.293758 3.2:-80784310 MS.gene40928:CDS
ACAGGAAAGTAAACAGTTAA+AGG 0.298387 3.2:+80781272 None:intergenic
AAAACATATTTACGTTAGTT+TGG 0.301907 3.2:-80781388 MS.gene40928:CDS
GGGAACCTGCTCGCCGGATT+TGG 0.301956 3.2:-80781593 MS.gene40928:CDS
TGCATGGGATATGCTGCTTT+TGG 0.316047 3.2:-80781629 MS.gene40928:CDS
GTATCTATTGTGGCTGGTCT+TGG 0.319531 3.2:-80781164 MS.gene40928:CDS
TGGTGTCTCAAAAGCATATT+GGG 0.324806 3.2:-80781573 MS.gene40928:CDS
CTTGGAATTTCCAAAGTTGC+AGG 0.329872 3.2:-80782719 MS.gene40928:intron
AATAGAAAACGGTACTGTTA+TGG 0.340529 3.2:-80782424 MS.gene40928:intron
GAGTAGGAAGTGGATTATTC+TGG 0.341119 3.2:-80781213 MS.gene40928:CDS
TTTCTCGACGAAGGCAAATA+GGG 0.341560 3.2:+80781484 None:intergenic
ATAGTTTCTCTTTCCAAATT+CGG 0.343023 3.2:+80784207 None:intergenic
TTTGGGAGTGATTGGGGCAT+TGG 0.355425 3.2:-80781303 MS.gene40928:CDS
AACCCATACATGATAGCTTT+TGG 0.357510 3.2:-80782848 MS.gene40928:CDS
GATGCAGTTAGTAACATTCT+TGG 0.359420 3.2:-80784175 MS.gene40928:intron
ACGATGATGGCCGTGTTAAA+CGG 0.361196 3.2:-80784500 MS.gene40928:CDS
AAAGAGAAACTATACTTTCA+TGG 0.361574 3.2:-80784197 MS.gene40928:CDS
TGTGGCTGGTCTTGGCTCAT+TGG 0.362801 3.2:-80781156 MS.gene40928:CDS
TCCACAATTGCTCTTGCTCT+TGG 0.363333 3.2:-80782737 MS.gene40928:CDS
TACAAATGAAGATCCCAAAA+TGG 0.364992 3.2:-80781235 MS.gene40928:CDS
TTGGCTCATTGGTCGGTGTC+TGG 0.365007 3.2:-80781145 MS.gene40928:CDS
ACACTTGGTATGCTCCAAAA+AGG 0.366510 3.2:+80781516 None:intergenic
TTGGGAGTGATTGGGGCATT+GGG 0.373067 3.2:-80781302 MS.gene40928:CDS
AAAGACGCATGTCATATTTC+AGG 0.375996 3.2:-80782872 MS.gene40928:CDS
ATAACAGCTGTGATAGGATC+TGG 0.377729 3.2:-80784358 MS.gene40928:CDS
CACCACATGTTATGAAAATC+TGG 0.392967 3.2:+80782797 None:intergenic
AGGTATATAACCTGCAACTT+TGG 0.398196 3.2:+80782709 None:intergenic
ACGCCAAAAGCTATCATGTA+TGG 0.400343 3.2:+80782845 None:intergenic
TTGGTGTCTCAAAAGCATAT+TGG 0.403668 3.2:-80781574 MS.gene40928:CDS
ATAGAAAACGGTACTGTTAT+GGG 0.405404 3.2:-80782423 MS.gene40928:intron
AAAGGTGTACCTGAATTTCC+AGG 0.430716 3.2:+80782292 None:intergenic
ATGGGTTGGATTGCTGGTCC+TGG 0.431751 3.2:-80784304 MS.gene40928:CDS
GGTCTATAGCTCAGATGGGT+TGG 0.444852 3.2:-80784318 MS.gene40928:CDS
CTGGGGTGCTCTCCTTAGCC+TGG 0.452285 3.2:-80784339 MS.gene40928:CDS
GGGCCCAGTGTTAAGATTTG+TGG 0.452949 3.2:-80783914 MS.gene40928:CDS
GAAAATCTGGAATTTGAGAA+AGG 0.460822 3.2:+80782810 None:intergenic
AGCCTGGTCTATAGCTCAGA+TGG 0.469391 3.2:-80784323 MS.gene40928:CDS
CTGCCTCATTGTATCTATTG+TGG 0.469595 3.2:-80781174 MS.gene40928:CDS
CTCATTGTATCTATTGTGGC+TGG 0.472707 3.2:-80781170 MS.gene40928:CDS
TTATCTGCTCTGTGGCTGCA+TGG 0.476635 3.2:-80781645 MS.gene40928:CDS
GAATTCAAAGTTAAAATCCC+TGG 0.478084 3.2:-80781428 MS.gene40928:CDS
TTATGTGTCCATACCTCTGA+TGG 0.478499 3.2:-80782896 MS.gene40928:CDS
ACTGTTATGGGTAGCCTCAC+AGG 0.482753 3.2:-80782411 MS.gene40928:CDS
GACGAAGGCAAATAGGGGTT+GGG 0.484362 3.2:+80781490 None:intergenic
AAGATGGTAGAACACTCTTC+CGG 0.487867 3.2:-80784597 MS.gene40928:CDS
CACATTATAACAGCTGTGAT+AGG 0.489553 3.2:-80784364 MS.gene40928:CDS
GGCCCAGTGTTAAGATTTGT+GGG 0.490344 3.2:-80783913 MS.gene40928:CDS
TCCAAGAGCAAGAGCAATTG+TGG 0.490585 3.2:+80782736 None:intergenic
GTTTAATTCGATAAGCTGAA+TGG 0.491434 3.2:+80781101 None:intergenic
ATTTGCCTTCGTCGAGAAAG+AGG 0.492276 3.2:-80781480 MS.gene40928:CDS
AATCCGGCGAGCAGGTTCCC+TGG 0.492450 3.2:+80781596 None:intergenic
TGAATGGTTTGTATTTCTGC+AGG 0.492604 3.2:+80781117 None:intergenic
ACATATTTACGTTAGTTTGG+AGG 0.492783 3.2:-80781385 MS.gene40928:CDS
CAATATCTCCACGGTAGCTA+AGG 0.493540 3.2:+80784568 None:intergenic
TGCTGCCTCTTTCTCGACGA+AGG 0.495845 3.2:+80781475 None:intergenic
CGACGAAGGCAAATAGGGGT+TGG 0.498834 3.2:+80781489 None:intergenic
TTTAACTGTTTACTTTCCTG+TGG 0.499525 3.2:-80781270 MS.gene40928:CDS
TATCTGCTCTGTGGCTGCAT+GGG 0.499617 3.2:-80781644 MS.gene40928:CDS
AGCTACCGTGGAGATATTGT+TGG 0.499909 3.2:-80784564 MS.gene40928:CDS
TCCCAAAATGGAGTAGGAAG+TGG 0.501131 3.2:-80781223 MS.gene40928:CDS
ACGGTAGCTAAGGTTGGTTC+CGG 0.506142 3.2:+80784578 None:intergenic
AGGCGATGTTTCCAAGACCT+TGG 0.513092 3.2:+80782340 None:intergenic
AGACACCAAATCCGGCGAGC+AGG 0.523063 3.2:+80781588 None:intergenic
TAACAGCTGTGATAGGATCT+GGG 0.524232 3.2:-80784357 MS.gene40928:CDS
TCCAAATACTATGACGATGA+TGG 0.532295 3.2:-80784513 MS.gene40928:CDS
TGACTGTAGACTGGCAAACC+AGG 0.534144 3.2:+80781410 None:intergenic
GCTGGTCTTGGCTCATTGGT+CGG 0.537162 3.2:-80781152 MS.gene40928:CDS
CTCGCTGATTGTTATCGTTG+TGG 0.546122 3.2:-80784235 MS.gene40928:CDS
CGCCAAAAGCTATCATGTAT+GGG 0.549420 3.2:+80782846 None:intergenic
GTGGGAGCATGTAGTCCAAA+CGG 0.556209 3.2:+80784384 None:intergenic
TGGAGATATTGTTGGCATTG+AGG 0.559066 3.2:-80784556 MS.gene40928:CDS
ATAGGGGTTGGGCATACACT+TGG 0.560213 3.2:+80781501 None:intergenic
AATCTGAGTCAGGAACCGTT+TGG 0.563153 3.2:-80784399 MS.gene40928:intron
GCGCCAGGGAACCTGCTCGC+CGG 0.570329 3.2:-80781599 MS.gene40928:CDS
TATCCCACAAATCTTAACAC+TGG 0.570920 3.2:+80783910 None:intergenic
GATGGCCGTGTTAAACGGAC+AGG 0.572114 3.2:-80784495 MS.gene40928:intron
CTATCACAGCTGTTATAATG+TGG 0.579458 3.2:+80784365 None:intergenic
TGAAGATCCCAAAATGGAGT+AGG 0.579767 3.2:-80781229 MS.gene40928:CDS
ATCAAATCTCCACCATCAGA+AGG 0.581249 3.2:-80781719 MS.gene40928:CDS
GCCTGGTCTATAGCTCAGAT+GGG 0.582657 3.2:-80784322 MS.gene40928:CDS
ATCTCCACGGTAGCTAAGGT+TGG 0.584583 3.2:+80784572 None:intergenic
GATATTGTTGGCATTGAGGA+TGG 0.590897 3.2:-80784552 MS.gene40928:CDS
CTTAACTCACATCATGCTCA+TGG 0.591519 3.2:+80783835 None:intergenic
ATCCCACAAATCTTAACACT+GGG 0.591549 3.2:+80783911 None:intergenic
TATCACAGCTGTTATAATGT+GGG 0.593327 3.2:+80784366 None:intergenic
TTCTCGACGAAGGCAAATAG+GGG 0.607159 3.2:+80781485 None:intergenic
GACTGTAGACTGGCAAACCA+GGG 0.610020 3.2:+80781411 None:intergenic
TTATACCTGTCCGTTTAACA+CGG 0.610345 3.2:+80784490 None:intergenic
AATCAACATTGCGATGAGAG+TGG 0.611911 3.2:+80781343 None:intergenic
CTGAGCTATAGACCAGGCTA+AGG 0.616886 3.2:+80784327 None:intergenic
TGTACGATATACATCTCCAC+AGG 0.631987 3.2:+80781254 None:intergenic
AAGCGTCGGAACAGTGACCC+CGG 0.633976 3.2:-80782385 MS.gene40928:CDS
AAAAGAATATGAATAAGCAA+AGG 0.634204 3.2:+80782320 None:intergenic
ACCCATCTGAGCTATAGACC+AGG 0.634300 3.2:+80784321 None:intergenic
AGCCTCACAGGAGTAAGCGT+CGG 0.646014 3.2:-80782399 MS.gene40928:CDS
AACAGCTGTGATAGGATCTG+GGG 0.646224 3.2:-80784356 MS.gene40928:CDS
CAATGCCAACAATATCTCCA+CGG 0.659764 3.2:+80784559 None:intergenic
GGAACCAACCTTAGCTACCG+TGG 0.665944 3.2:-80784576 MS.gene40928:CDS
TTCCGACGCTTACTCCTGTG+AGG 0.685835 3.2:+80782397 None:intergenic
CAGCCACAATAGATACAATG+AGG 0.686773 3.2:+80781171 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAATTTAACATGATT+TGG + chr3.2:80783471-80783490 None:intergenic 10.0%
!!! AAAAAAAAATCATCTTATTT+CGG + chr3.2:80781978-80781997 None:intergenic 10.0%
!!! ATTTTTTACAAATAGATTAA+AGG + chr3.2:80783426-80783445 None:intergenic 10.0%
!! AAAAAAACACCTTAAAAATA+AGG + chr3.2:80783629-80783648 None:intergenic 15.0%
!! AAAACACAAAATTAAAGAAA+GGG + chr3.2:80782369-80782388 None:intergenic 15.0%
!!! ACAAATTTTCACTTAATTTT+TGG - chr3.2:80783028-80783047 MS.gene40928:intron 15.0%
!!! GTTATTTTTAACTTCTAAAA+TGG + chr3.2:80783683-80783702 None:intergenic 15.0%
!!! TGAAGTTATATTTTCTTTAA+GGG - chr3.2:80782163-80782182 MS.gene40928:intron 15.0%
!!! TTGAAGTTATATTTTCTTTA+AGG - chr3.2:80782162-80782181 MS.gene40928:intron 15.0%
!!! TTTATCTAATTTTGTTCAAT+TGG - chr3.2:80783244-80783263 MS.gene40928:intron 15.0%
!! AAAACATATTTACGTTAGTT+TGG - chr3.2:80784309-80784328 MS.gene40928:CDS 20.0%
!! AAAAGAATATGAATAAGCAA+AGG + chr3.2:80783380-80783399 None:intergenic 20.0%
!! AATTGGAATATATTGAAGTA+TGG + chr3.2:80782549-80782568 None:intergenic 20.0%
!! CAAAACACAAAATTAAAGAA+AGG + chr3.2:80782370-80782389 None:intergenic 20.0%
!! TGATATATGGTTATATAGTT+TGG - chr3.2:80782703-80782722 MS.gene40928:intron 20.0%
!! TTACAAAACAATTTATCACA+TGG + chr3.2:80781578-80781597 None:intergenic 20.0%
!!! AGATTAGACATTAATTTGTT+TGG + chr3.2:80783942-80783961 None:intergenic 20.0%
!!! GATGATTTTTTTTTTGCTAT+TGG - chr3.2:80781984-80782003 MS.gene40928:intron 20.0%
!!! TAATTTTGTTCAATTGGTTA+TGG - chr3.2:80783250-80783269 MS.gene40928:intron 20.0%
!!! TAGAAAAAGTTTCTTCTTTT+AGG + chr3.2:80782227-80782246 None:intergenic 20.0%
!!! TATTATCTAGCTTGATTAAT+TGG + chr3.2:80782566-80782585 None:intergenic 20.0%
!!! TCTTTAATTTTGTGTTTTGT+GGG - chr3.2:80782371-80782390 MS.gene40928:CDS 20.0%
!!! TTATAACCTCCTTATTTTTA+AGG - chr3.2:80783617-80783636 MS.gene40928:intron 20.0%
!!! TTCTTTAATTTTGTGTTTTG+TGG - chr3.2:80782370-80782389 MS.gene40928:CDS 20.0%
! AAAACACCTTAAAAATAAGG+AGG + chr3.2:80783626-80783645 None:intergenic 25.0%
! AAAGAGAAACTATACTTTCA+TGG - chr3.2:80781500-80781519 MS.gene40928:CDS 25.0%
! AATGTCTAATCTAATTACAC+AGG - chr3.2:80783950-80783969 MS.gene40928:intron 25.0%
! AATTCTTCTTATCAGTACTT+AGG + chr3.2:80783743-80783762 None:intergenic 25.0%
! AGATTACTTACTAATGCTAT+AGG - chr3.2:80783550-80783569 MS.gene40928:intron 25.0%
! AGCATTAGTAAGTAATCTAT+AGG + chr3.2:80783548-80783567 None:intergenic 25.0%
! ATAGTTTCTCTTTCCAAATT+CGG + chr3.2:80781493-80781512 None:intergenic 25.0%
! ATTGGTTATGGAATAGAAAA+CGG - chr3.2:80783262-80783281 MS.gene40928:intron 25.0%
! CATTAGTAAGTAATCTATAG+GGG + chr3.2:80783546-80783565 None:intergenic 25.0%
! CATTTCTTTCTACTGATATA+TGG - chr3.2:80782690-80782709 MS.gene40928:intron 25.0%
! GATAATATTAATTCTGTTGC+TGG - chr3.2:80782579-80782598 MS.gene40928:intron 25.0%
! GCATTAGTAAGTAATCTATA+GGG + chr3.2:80783547-80783566 None:intergenic 25.0%
! TAACTATTAAGGCTATATCT+TGG + chr3.2:80783768-80783787 None:intergenic 25.0%
!! AGATATAGCCTTAATAGTTA+AGG - chr3.2:80783768-80783787 MS.gene40928:intron 25.0%
!! GATATAGCCTTAATAGTTAA+GGG - chr3.2:80783769-80783788 MS.gene40928:intron 25.0%
!! GTTCAGTATTTGAATCTTTT+CGG - chr3.2:80781810-80781829 MS.gene40928:intron 25.0%
!! TTGAATTCTCTGTCAATTTT+GGG + chr3.2:80784257-80784276 None:intergenic 25.0%
!! TTTGAATTCTCTGTCAATTT+TGG + chr3.2:80784258-80784277 None:intergenic 25.0%
!!! GTTTTAAATTGCACTGTAAA+TGG + chr3.2:80782527-80782546 None:intergenic 25.0%
AAAAAACCTTTAGCATGTGA+GGG + chr3.2:80783586-80783605 None:intergenic 30.0%
AACTACAGACATAGAAACTT+GGG + chr3.2:80781651-80781670 None:intergenic 30.0%
AATAGAAAACGGTACTGTTA+TGG - chr3.2:80783273-80783292 MS.gene40928:intron 30.0%
AATATCATATCACCGAATCA+AGG + chr3.2:80781269-80781288 None:intergenic 30.0%
ACACGTTATAATGCATGTTA+TGG + chr3.2:80781754-80781773 None:intergenic 30.0%
ACAGGAAAGTAAACAGTTAA+AGG + chr3.2:80784428-80784447 None:intergenic 30.0%
ATAGAAAACGGTACTGTTAT+GGG - chr3.2:80783274-80783293 MS.gene40928:intron 30.0%
ATATGCACCCTTAACTATTA+AGG + chr3.2:80783779-80783798 None:intergenic 30.0%
CTATAGTTCAAGACTTCAAA+GGG + chr3.2:80783075-80783094 None:intergenic 30.0%
CTTCTTACGGTTTAAAAATG+TGG - chr3.2:80783110-80783129 MS.gene40928:intron 30.0%
CTTGAACTTATAAACTGTGT+AGG + chr3.2:80783177-80783196 None:intergenic 30.0%
GAATTCAAAGTTAAAATCCC+TGG - chr3.2:80784269-80784288 MS.gene40928:CDS 30.0%
GATGATGCTGAAAAATATCA+TGG + chr3.2:80781421-80781440 None:intergenic 30.0%
GTGTTTGTTTGCGTTTAATT+GGG + chr3.2:80782028-80782047 None:intergenic 30.0%
TAAAAAACCTTTAGCATGTG+AGG + chr3.2:80783587-80783606 None:intergenic 30.0%
TACAAATGAAGATCCCAAAA+TGG - chr3.2:80784462-80784481 MS.gene40928:intron 30.0%
TATCACAGCTGTTATAATGT+GGG + chr3.2:80781334-80781353 None:intergenic 30.0%
TGTATCGAACAAATTGAAGT+AGG + chr3.2:80783011-80783030 None:intergenic 30.0%
TGTGTTTGTTTGCGTTTAAT+TGG + chr3.2:80782029-80782048 None:intergenic 30.0%
TTACTGCAGAAAACTTCTTA+CGG - chr3.2:80783097-80783116 MS.gene40928:intron 30.0%
TTTAACTGTTTACTTTCCTG+TGG - chr3.2:80784427-80784446 MS.gene40928:intron 30.0%
! AATAGTTAAGGGTGCATATT+AGG - chr3.2:80783780-80783799 MS.gene40928:intron 30.0%
! ACATATTTACGTTAGTTTGG+AGG - chr3.2:80784312-80784331 MS.gene40928:CDS 30.0%
! GAAAATCTGGAATTTGAGAA+AGG + chr3.2:80782890-80782909 None:intergenic 30.0%
! TTCATATTCTTTTGTTCTCC+TGG - chr3.2:80783387-80783406 MS.gene40928:intron 30.0%
! TTCCAGATTTTCATAACATG+TGG - chr3.2:80782898-80782917 MS.gene40928:CDS 30.0%
!! CAACATGTAAGTGATTTGTT+TGG + chr3.2:80783883-80783902 None:intergenic 30.0%
!! TTGTTTGAATCAGCTGATTT+TGG - chr3.2:80782755-80782774 MS.gene40928:CDS 30.0%
!!! AATATGTTTTGACTGTAGAC+TGG + chr3.2:80784299-80784318 None:intergenic 30.0%
AAAAACCTTTAGCATGTGAG+GGG + chr3.2:80783585-80783604 None:intergenic 35.0%
AAAGACGCATGTCATATTTC+AGG - chr3.2:80782825-80782844 MS.gene40928:CDS 35.0%
AGAAAGAGGCAGCAAAAAAA+TGG - chr3.2:80784231-80784250 MS.gene40928:CDS 35.0%
AGGTATATAACCTGCAACTT+TGG + chr3.2:80782991-80783010 None:intergenic 35.0%
ATCCCACAAATCTTAACACT+GGG + chr3.2:80781789-80781808 None:intergenic 35.0%
CAACTACAGACATAGAAACT+TGG + chr3.2:80781652-80781671 None:intergenic 35.0%
CACATTATAACAGCTGTGAT+AGG - chr3.2:80781333-80781352 MS.gene40928:CDS 35.0%
CACCACATGTTATGAAAATC+TGG + chr3.2:80782903-80782922 None:intergenic 35.0%
CCTATAGTTCAAGACTTCAA+AGG + chr3.2:80783076-80783095 None:intergenic 35.0%
CTATCACAGCTGTTATAATG+TGG + chr3.2:80781335-80781354 None:intergenic 35.0%
CTGAAAAATATCATGGATCC+AGG + chr3.2:80781414-80781433 None:intergenic 35.0%
GATGACAGTTGAACTTGTAT+GGG - chr3.2:80782728-80782747 MS.gene40928:CDS 35.0%
GATGCAGTTAGTAACATTCT+TGG - chr3.2:80781522-80781541 MS.gene40928:CDS 35.0%
TATCCCACAAATCTTAACAC+TGG + chr3.2:80781790-80781809 None:intergenic 35.0%
TCCAAATACTATGACGATGA+TGG - chr3.2:80781184-80781203 MS.gene40928:CDS 35.0%
TGATGACAGTTGAACTTGTA+TGG - chr3.2:80782727-80782746 MS.gene40928:CDS 35.0%
TGTTACAAGTTACAACCTAG+TGG + chr3.2:80782126-80782145 None:intergenic 35.0%
TTATACCTGTCCGTTTAACA+CGG + chr3.2:80781210-80781229 None:intergenic 35.0%
TTTCTTAACATGTGCCCTTA+GGG + chr3.2:80782204-80782223 None:intergenic 35.0%
! AACCCATACATGATAGCTTT+TGG - chr3.2:80782849-80782868 MS.gene40928:CDS 35.0%
! ACAACATTTTATCTGCTCTG+TGG - chr3.2:80784044-80784063 MS.gene40928:intron 35.0%
! ATTATAACGTGTTTTGCAGG+CGG - chr3.2:80781762-80781781 MS.gene40928:intron 35.0%
! CAGATTTTCATAACATGTGG+TGG - chr3.2:80782901-80782920 MS.gene40928:CDS 35.0%
! CTGGCAGTTGCATTTTATTA+TGG - chr3.2:80782598-80782617 MS.gene40928:intron 35.0%
! GCTATCGTTATTCACCTTTT+TGG - chr3.2:80784167-80784186 MS.gene40928:intron 35.0%
! TGAATGGTTTGTATTTCTGC+AGG + chr3.2:80784583-80784602 None:intergenic 35.0%
! TGCATTATAACGTGTTTTGC+AGG - chr3.2:80781759-80781778 MS.gene40928:intron 35.0%
! TGGTGTCTCAAAAGCATATT+GGG - chr3.2:80784124-80784143 MS.gene40928:intron 35.0%
! TGTGTTTTGTGGGATTCAAA+TGG - chr3.2:80782381-80782400 MS.gene40928:CDS 35.0%
! TTGGTGTCTCAAAAGCATAT+TGG - chr3.2:80784123-80784142 MS.gene40928:intron 35.0%
! TTTTCTGCATGTGATCTGAT+AGG + chr3.2:80783153-80783172 None:intergenic 35.0%
! TTTTGTTCTCCTGGAAATTC+AGG - chr3.2:80783396-80783415 MS.gene40928:intron 35.0%
!! AATCATTAACTTGTGCCTTG+AGG - chr3.2:80782327-80782346 MS.gene40928:CDS 35.0%
!! AATCTTTTCGGAAGTGCAAT+AGG - chr3.2:80781822-80781841 MS.gene40928:intron 35.0%
!! ATCATTAACTTGTGCCTTGA+GGG - chr3.2:80782328-80782347 MS.gene40928:CDS 35.0%
!! CCATTTTTCAACGACGTTTT+GGG - chr3.2:80784377-80784396 MS.gene40928:CDS 35.0%
!! CCTTTGAAGTCTTGAACTAT+AGG - chr3.2:80783073-80783092 MS.gene40928:intron 35.0%
!! TCCATTTTTCAACGACGTTT+TGG - chr3.2:80784376-80784395 MS.gene40928:CDS 35.0%
!! TTCATTGCTTTTCCTTCTGA+TGG + chr3.2:80783993-80784012 None:intergenic 35.0%
!!! TTTTTTTGCTATTGGCCAAG+TGG - chr3.2:80781992-80782011 MS.gene40928:intron 35.0%
AAAACCTTTAGCATGTGAGG+GGG + chr3.2:80783584-80783603 None:intergenic 40.0%
AATCAACATTGCGATGAGAG+TGG + chr3.2:80784357-80784376 None:intergenic 40.0%
ACACTTGGTATGCTCCAAAA+AGG + chr3.2:80784184-80784203 None:intergenic 40.0%
ACGCCAAAAGCTATCATGTA+TGG + chr3.2:80782855-80782874 None:intergenic 40.0%
ATAACAGCTGTGATAGGATC+TGG - chr3.2:80781339-80781358 MS.gene40928:CDS 40.0%
ATCAAATCTCCACCATCAGA+AGG - chr3.2:80783978-80783997 MS.gene40928:intron 40.0%
CAAGTTACAACCTAGTGGTT+TGG + chr3.2:80782121-80782140 None:intergenic 40.0%
CAATGCCAACAATATCTCCA+CGG + chr3.2:80781141-80781160 None:intergenic 40.0%
CAGACATAGAAACTTGGGAT+AGG + chr3.2:80781646-80781665 None:intergenic 40.0%
CAGCCACAATAGATACAATG+AGG + chr3.2:80784529-80784548 None:intergenic 40.0%
CATGAGCATGATGTGAGTTA+AGG - chr3.2:80781863-80781882 MS.gene40928:intron 40.0%
CATTTCCTGTGTCCTTGATT+CGG - chr3.2:80781254-80781273 MS.gene40928:CDS 40.0%
CCCAAAACGTCGTTGAAAAA+TGG + chr3.2:80784380-80784399 None:intergenic 40.0%
CGCCAAAAGCTATCATGTAT+GGG + chr3.2:80782854-80782873 None:intergenic 40.0%
CTCATTGTATCTATTGTGGC+TGG - chr3.2:80784527-80784546 MS.gene40928:CDS 40.0%
CTGCCTCATTGTATCTATTG+TGG - chr3.2:80784523-80784542 MS.gene40928:CDS 40.0%
CTGTAAATGGATGCTCACAT+TGG + chr3.2:80782514-80782533 None:intergenic 40.0%
CTTAACTCACATCATGCTCA+TGG + chr3.2:80781865-80781884 None:intergenic 40.0%
CTTGGAATTTCCAAAGTTGC+AGG - chr3.2:80782978-80782997 MS.gene40928:intron 40.0%
GCCATCATCGTCATAGTATT+TGG + chr3.2:80781188-80781207 None:intergenic 40.0%
GTTTCTTAACATGTGCCCTT+AGG + chr3.2:80782205-80782224 None:intergenic 40.0%
TAACAGCTGTGATAGGATCT+GGG - chr3.2:80781340-80781359 MS.gene40928:CDS 40.0%
TGAAGATCCCAAAATGGAGT+AGG - chr3.2:80784468-80784487 MS.gene40928:intron 40.0%
TGGAGATATTGTTGGCATTG+AGG - chr3.2:80781141-80781160 MS.gene40928:CDS 40.0%
TGTACGATATACATCTCCAC+AGG + chr3.2:80784446-80784465 None:intergenic 40.0%
TTATGTGTCCATACCTCTGA+TGG - chr3.2:80782801-80782820 MS.gene40928:CDS 40.0%
TTGTTGCCTTAATCTGAGTC+AGG - chr3.2:80781288-80781307 MS.gene40928:CDS 40.0%
TTTCTCGACGAAGGCAAATA+GGG + chr3.2:80784216-80784235 None:intergenic 40.0%
! AAAGGTGTACCTGAATTTCC+AGG + chr3.2:80783408-80783427 None:intergenic 40.0%
! ATACATGATAGCTTTTGGCG+TGG - chr3.2:80782854-80782873 MS.gene40928:CDS 40.0%
! ATCCACTTCCTACTCCATTT+TGG + chr3.2:80784479-80784498 None:intergenic 40.0%
! GATATTGTTGGCATTGAGGA+TGG - chr3.2:80781145-80781164 MS.gene40928:CDS 40.0%
! GGTTGTAACTTGTAACAACG+AGG - chr3.2:80782129-80782148 MS.gene40928:intron 40.0%
! TCCACTTCCTACTCCATTTT+GGG + chr3.2:80784478-80784497 None:intergenic 40.0%
! TTATAACGTGTTTTGCAGGC+GGG - chr3.2:80781763-80781782 MS.gene40928:intron 40.0%
!! AATGTTAACTTGTGCCCTCA+AGG + chr3.2:80782345-80782364 None:intergenic 40.0%
!! AGTGTTAACTTGTGCCCTAA+GGG - chr3.2:80782187-80782206 MS.gene40928:intron 40.0%
!! ATTGCTTTTCCTTCTGATGG+TGG + chr3.2:80783990-80784009 None:intergenic 40.0%
!! GAAAACCCCCCATACTTTTT+GGG + chr3.2:80783338-80783357 None:intergenic 40.0%
!! GAGTAGGAAGTGGATTATTC+TGG - chr3.2:80784484-80784503 MS.gene40928:intron 40.0%
!! GTCATTTTATGTGGAGTCCA+CGG + chr3.2:80782091-80782110 None:intergenic 40.0%
!! TAGTGTTAACTTGTGCCCTA+AGG - chr3.2:80782186-80782205 MS.gene40928:intron 40.0%
!!! ATCAGCTGATTTTGGTTGAC+AGG - chr3.2:80782763-80782782 MS.gene40928:CDS 40.0%
!!! TCAGCTGATTTTGGTTGACA+GGG - chr3.2:80782764-80782783 MS.gene40928:CDS 40.0%
!!! TGCTTTTGAGACACCAAATC+CGG + chr3.2:80784120-80784139 None:intergenic 40.0%
AACAGCTGTGATAGGATCTG+GGG - chr3.2:80781341-80781360 MS.gene40928:CDS 45.0%
AATCTGAGTCAGGAACCGTT+TGG - chr3.2:80781298-80781317 MS.gene40928:CDS 45.0%
ACGGTTCCTGACTCAGATTA+AGG + chr3.2:80781297-80781316 None:intergenic 45.0%
AGCTACCGTGGAGATATTGT+TGG - chr3.2:80781133-80781152 MS.gene40928:CDS 45.0%
ATTTGCCTTCGTCGAGAAAG+AGG - chr3.2:80784217-80784236 MS.gene40928:CDS 45.0%
CAATATCTCCACGGTAGCTA+AGG + chr3.2:80781132-80781151 None:intergenic 45.0%
CTTTCTCGACGAAGGCAAAT+AGG + chr3.2:80784217-80784236 None:intergenic 45.0%
GCGTTTAATTGGGCATGTGT+TGG + chr3.2:80782018-80782037 None:intergenic 45.0%
GGCCCAGTGTTAAGATTTGT+GGG - chr3.2:80781784-80781803 MS.gene40928:intron 45.0%
TACCACACAACTGACAAACG+TGG - chr3.2:80782635-80782654 MS.gene40928:intron 45.0%
TATCACCGAATCAAGGACAC+AGG + chr3.2:80781262-80781281 None:intergenic 45.0%
TCCAAGAGCAAGAGCAATTG+TGG + chr3.2:80782964-80782983 None:intergenic 45.0%
TCCACAATTGCTCTTGCTCT+TGG - chr3.2:80782960-80782979 MS.gene40928:intron 45.0%
TCCCAAAATGGAGTAGGAAG+TGG - chr3.2:80784474-80784493 MS.gene40928:intron 45.0%
TTCTCGACGAAGGCAAATAG+GGG + chr3.2:80784215-80784234 None:intergenic 45.0%
! AAAGTATGGGGGGTTTTCCA+AGG - chr3.2:80783340-80783359 MS.gene40928:intron 45.0%
! ACATGCGTCTTTTCCATCAG+AGG + chr3.2:80782817-80782836 None:intergenic 45.0%
! ACGATGATGGCCGTGTTAAA+CGG - chr3.2:80781197-80781216 MS.gene40928:CDS 45.0%
! CGTCTTTTCCATCAGAGGTA+TGG + chr3.2:80782812-80782831 None:intergenic 45.0%
! CTCGCTGATTGTTATCGTTG+TGG - chr3.2:80781462-80781481 MS.gene40928:CDS 45.0%
! GGAAAACCCCCCATACTTTT+TGG + chr3.2:80783339-80783358 None:intergenic 45.0%
!! GGCTGTGAGGTCATTTTATG+TGG + chr3.2:80782100-80782119 None:intergenic 45.0%
!! GTATCTATTGTGGCTGGTCT+TGG - chr3.2:80784533-80784552 MS.gene40928:CDS 45.0%
!!! AACGACGTTTTGGGAGTGAT+TGG - chr3.2:80784386-80784405 MS.gene40928:CDS 45.0%
!!! ACGACGTTTTGGGAGTGATT+GGG - chr3.2:80784387-80784406 MS.gene40928:CDS 45.0%
!!! TGATTGGGGCATTGGGATTT+TGG - chr3.2:80784402-80784421 MS.gene40928:intron 45.0%
!!! TGCATGGGATATGCTGCTTT+TGG - chr3.2:80784068-80784087 MS.gene40928:intron 45.0%
!! AAATATAGAAAAAAAATTAT+TGG + chr3.2:80782306-80782325 None:intergenic 5.0%
ACCCATCTGAGCTATAGACC+AGG + chr3.2:80781379-80781398 None:intergenic 50.0%
ACTGTTATGGGTAGCCTCAC+AGG - chr3.2:80783286-80783305 MS.gene40928:intron 50.0%
AGCCTGGTCTATAGCTCAGA+TGG - chr3.2:80781374-80781393 MS.gene40928:CDS 50.0%
AGGCGATGTTTCCAAGACCT+TGG + chr3.2:80783360-80783379 None:intergenic 50.0%
ATAGGGGTTGGGCATACACT+TGG + chr3.2:80784199-80784218 None:intergenic 50.0%
ATCTCCACGGTAGCTAAGGT+TGG + chr3.2:80781128-80781147 None:intergenic 50.0%
CAAACAAACACACGCACACG+AGG - chr3.2:80782037-80782056 MS.gene40928:intron 50.0%
CATACCCCCTCACATGCTAA+AGG - chr3.2:80783577-80783596 MS.gene40928:intron 50.0%
CGTTGTGGTGACACCGAATT+TGG - chr3.2:80781477-80781496 MS.gene40928:CDS 50.0%
CTGAGCTATAGACCAGGCTA+AGG + chr3.2:80781373-80781392 None:intergenic 50.0%
GACGAAGGCAAATAGGGGTT+GGG + chr3.2:80784210-80784229 None:intergenic 50.0%
GACTGTAGACTGGCAAACCA+GGG + chr3.2:80784289-80784308 None:intergenic 50.0%
GCCTGGTCTATAGCTCAGAT+GGG - chr3.2:80781375-80781394 MS.gene40928:CDS 50.0%
GGGCCCAGTGTTAAGATTTG+TGG - chr3.2:80781783-80781802 MS.gene40928:intron 50.0%
GGTCTATAGCTCAGATGGGT+TGG - chr3.2:80781379-80781398 MS.gene40928:CDS 50.0%
TATCTGCTCTGTGGCTGCAT+GGG - chr3.2:80784053-80784072 MS.gene40928:intron 50.0%
TGACTGTAGACTGGCAAACC+AGG + chr3.2:80784290-80784309 None:intergenic 50.0%
TTATCTGCTCTGTGGCTGCA+TGG - chr3.2:80784052-80784071 MS.gene40928:intron 50.0%
TTTGGGAGTGATTGGGGCAT+TGG - chr3.2:80784394-80784413 MS.gene40928:intron 50.0%
! AACCTAGTGGTTTGGCTGTG+AGG + chr3.2:80782113-80782132 None:intergenic 50.0%
! ACGGTAGCTAAGGTTGGTTC+CGG + chr3.2:80781122-80781141 None:intergenic 50.0%
! GTGGGAGCATGTAGTCCAAA+CGG + chr3.2:80781316-80781335 None:intergenic 50.0%
! TTGGGAGTGATTGGGGCATT+GGG - chr3.2:80784395-80784414 MS.gene40928:intron 50.0%
!! CTTTTGGAGACAATGCGCCA+GGG - chr3.2:80784084-80784103 MS.gene40928:intron 50.0%
!!! CGACGTTTTGGGAGTGATTG+GGG - chr3.2:80784388-80784407 MS.gene40928:CDS 50.0%
AAACACACGCACACGAGGAG+GGG - chr3.2:80782042-80782061 MS.gene40928:intron 55.0%
ACAAACACACGCACACGAGG+AGG - chr3.2:80782040-80782059 MS.gene40928:intron 55.0%
AGCCTCACAGGAGTAAGCGT+CGG - chr3.2:80783298-80783317 MS.gene40928:intron 55.0%
CAAACACACGCACACGAGGA+GGG - chr3.2:80782041-80782060 MS.gene40928:intron 55.0%
CGACGAAGGCAAATAGGGGT+TGG + chr3.2:80784211-80784230 None:intergenic 55.0%
CGCCACGTTTGTCAGTTGTG+TGG + chr3.2:80782640-80782659 None:intergenic 55.0%
GACCTCACAGCCAAACCACT+AGG - chr3.2:80782108-80782127 MS.gene40928:intron 55.0%
GATGGCCGTGTTAAACGGAC+AGG - chr3.2:80781202-80781221 MS.gene40928:CDS 55.0%
GGAACCAACCTTAGCTACCG+TGG - chr3.2:80781121-80781140 MS.gene40928:CDS 55.0%
TGACCCCGGCCCAAAAAGTA+TGG - chr3.2:80783326-80783345 MS.gene40928:intron 55.0%
TGCTGCCTCTTTCTCGACGA+AGG + chr3.2:80784225-80784244 None:intergenic 55.0%
TTCCGACGCTTACTCCTGTG+AGG + chr3.2:80783303-80783322 None:intergenic 55.0%
! ACCCCGGCCCAAAAAGTATG+GGG - chr3.2:80783328-80783347 MS.gene40928:intron 55.0%
! GACCCCGGCCCAAAAAGTAT+GGG - chr3.2:80783327-80783346 MS.gene40928:intron 55.0%
! TGGGGGGTTTTCCAAGGTCT+TGG - chr3.2:80783346-80783365 MS.gene40928:intron 55.0%
! TTGGCTCATTGGTCGGTGTC+TGG - chr3.2:80784552-80784571 MS.gene40928:CDS 55.0%
! TTGGGCATGTGTTGGCCACT+TGG + chr3.2:80782010-80782029 None:intergenic 55.0%
!! ACCCCCCATACTTTTTGGGC+CGG + chr3.2:80783334-80783353 None:intergenic 55.0%
!! ATGGGTTGGATTGCTGGTCC+TGG - chr3.2:80781393-80781412 MS.gene40928:CDS 55.0%
!! GCTCAGATGGGTTGGATTGC+TGG - chr3.2:80781387-80781406 MS.gene40928:CDS 55.0%
!! GCTGGTCTTGGCTCATTGGT+CGG - chr3.2:80784545-80784564 MS.gene40928:CDS 55.0%
!! GCTTTTGGAGACAATGCGCC+AGG - chr3.2:80784083-80784102 MS.gene40928:intron 55.0%
!! TGTGGCTGGTCTTGGCTCAT+TGG - chr3.2:80784541-80784560 MS.gene40928:CDS 55.0%
AACACACGCACACGAGGAGG+GGG - chr3.2:80782043-80782062 MS.gene40928:intron 60.0%
AGACACCAAATCCGGCGAGC+AGG + chr3.2:80784112-80784131 None:intergenic 60.0%
GGAGTCCACGGTTTGAACCC+AGG + chr3.2:80782079-80782098 None:intergenic 60.0%
! CCCCGGCCCAAAAAGTATGG+GGG - chr3.2:80783329-80783348 MS.gene40928:intron 60.0%
! CCCGGCCCAAAAAGTATGGG+GGG - chr3.2:80783330-80783349 MS.gene40928:intron 60.0%
!! AAGCGTCGGAACAGTGACCC+CGG - chr3.2:80783312-80783331 MS.gene40928:intron 60.0%
!! CCCCCATACTTTTTGGGCCG+GGG + chr3.2:80783332-80783351 None:intergenic 60.0%
!! CCCCCCATACTTTTTGGGCC+GGG + chr3.2:80783333-80783352 None:intergenic 60.0%
AATCCGGCGAGCAGGTTCCC+TGG + chr3.2:80784104-80784123 None:intergenic 65.0%
CACGAGGAGGGGGAATGTGG+TGG - chr3.2:80782053-80782072 MS.gene40928:intron 65.0%
GAGGGGGAATGTGGTGGCCT+GGG - chr3.2:80782059-80782078 MS.gene40928:intron 65.0%
GCACACGAGGAGGGGGAATG+TGG - chr3.2:80782050-80782069 MS.gene40928:intron 65.0%
GGGAACCTGCTCGCCGGATT+TGG - chr3.2:80784104-80784123 MS.gene40928:intron 65.0%
GGTGGCCTGGGTTCAAACCG+TGG - chr3.2:80782071-80782090 MS.gene40928:intron 65.0%
! CTGGGGTGCTCTCCTTAGCC+TGG - chr3.2:80781358-80781377 MS.gene40928:CDS 65.0%
GGAGGGGGAATGTGGTGGCC+TGG - chr3.2:80782058-80782077 MS.gene40928:intron 70.0%
GCGCCAGGGAACCTGCTCGC+CGG - chr3.2:80784098-80784117 MS.gene40928:intron 75.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 80781103 80784616 80781103 ID=MS.gene40928
chr3.2 mRNA 80781103 80784616 80781103 ID=MS.gene40928.t1;Parent=MS.gene40928
chr3.2 exon 80784496 80784616 80784496 ID=MS.gene40928.t1.exon1;Parent=MS.gene40928.t1
chr3.2 CDS 80784496 80784616 80784496 ID=cds.MS.gene40928.t1;Parent=MS.gene40928.t1
chr3.2 exon 80784176 80784409 80784176 ID=MS.gene40928.t1.exon2;Parent=MS.gene40928.t1
chr3.2 CDS 80784176 80784409 80784176 ID=cds.MS.gene40928.t1;Parent=MS.gene40928.t1
chr3.2 exon 80783845 80783938 80783845 ID=MS.gene40928.t1.exon3;Parent=MS.gene40928.t1
chr3.2 CDS 80783845 80783938 80783845 ID=cds.MS.gene40928.t1;Parent=MS.gene40928.t1
chr3.2 exon 80782720 80782934 80782720 ID=MS.gene40928.t1.exon4;Parent=MS.gene40928.t1
chr3.2 CDS 80782720 80782934 80782720 ID=cds.MS.gene40928.t1;Parent=MS.gene40928.t1
chr3.2 exon 80782302 80782441 80782302 ID=MS.gene40928.t1.exon5;Parent=MS.gene40928.t1
chr3.2 CDS 80782302 80782441 80782302 ID=cds.MS.gene40928.t1;Parent=MS.gene40928.t1
chr3.2 exon 80781103 80781747 80781103 ID=MS.gene40928.t1.exon6;Parent=MS.gene40928.t1
chr3.2 CDS 80781103 80781747 80781103 ID=cds.MS.gene40928.t1;Parent=MS.gene40928.t1
Gene Sequence

>MS.gene40928

ATGGTAGAACACTCTTCCGGAACCAACCTTAGCTACCGTGGAGATATTGTTGGCATTGAGGATGGCACATCTTTACATGATTCCAAATACTATGACGATGATGGCCGTGTTAAACGGACAGGTATAATGAATGTATATTATATGCTTTGTACATTTCCTGTGTCCTTGATTCGGTGATATGATATTTGTTGCCTTAATCTGAGTCAGGAACCGTTTGGACTACATGCTCCCACATTATAACAGCTGTGATAGGATCTGGGGTGCTCTCCTTAGCCTGGTCTATAGCTCAGATGGGTTGGATTGCTGGTCCTGGATCCATGATATTTTTCAGCATCATCACTCTGTATACTTCATCATTTCTCGCTGATTGTTATCGTTGTGGTGACACCGAATTTGGAAAGAGAAACTATACTTTCATGGATGCAGTTAGTAACATTCTTGGTAATACATGTATATTAATACATGAATAGCACCATGTGATAAATTGTTTTGTAAATCGAGTATGACGTGATCTTCTTTTAAAAAAAAAAACATAAAATTCCTATCCCAAGTTTCTATGTCTGTAGTTGATTTTTTTTTTTTAAATGTCATGTAAATTAACATGTTTGTGTATATATTAACGATCACTTTTTTTAGATGAAATGCACACCATAACATGCATTATAACGTGTTTTGCAGGCGGGCCCAGTGTTAAGATTTGTGGGATAGTTCAGTATTTGAATCTTTTCGGAAGTGCAATAGGATACAATATTGCAGCTGCCATGAGCATGATGTGAGTTAAGGCATACTATGTCTTTGAAATCACGAAGTTTAGAAATTGTTTTGATTTGTCAACAGTACACACACACACACACACACACAGAGTAATAAAACCGAAATAAGATGATTTTTTTTTTGCTATTGGCCAAGTGGCCAACACATGCCCAATTAAACGCAAACAAACACACGCACACGAGGAGGGGGAATGTGGTGGCCTGGGTTCAAACCGTGGACTCCACATAAAATGACCTCACAGCCAAACCACTAGGTTGTAACTTGTAACAACGAGGACAAATAGATTTGAAGTTATATTTTCTTTAAGGGTAGTGTTAACTTGTGCCCTAAGGGCACATGTTAAGAAACCTAAAAGAAGAAACTTTTTCTAAAATTTTGTGCATTTAAATGATTAAAAAGTTAAATATTAAATGCAATGCACACATTCCAATAATTTTTTTTCTATATTTGAATCATTAACTTGTGCCTTGAGGGCACAAGTTAACATTTCCCTTTCTTTAATTTTGTGTTTTGTGGGATTCAAATGGACTTTAATTTTATTCATATTGATTTAGCTGTTTCAACAATTTTTAGTAAAGCTAGCAAAATAAACTTATCAACGTAAAAAGAATTTGAGCTTATCTTTAATGTATTTCCAATGTGAGCATCCATTTACAGTGCAATTTAAAACCATACTTCAATATATTCCAATTAATCAAGCTAGATAATATTAATTCTGTTGCTGGCAGTTGCATTTTATTATGGTGTGTATTAAATTGTACCACACAACTGACAAACGTGGCGTGATTGTTATAATTCACTGTCACTTCACAACATTTCTTTCTACTGATATATGGTTATATAGTTTGGTTGATGACAGTTGAACTTGTATGGGTTTGTTGTTTGAATCAGCTGATTTTGGTTGACAGGGAAATCAGAAAGTCTTTATGTGTCCATACCTCTGATGGAAAAGACGCATGTCATATTTCAGGCAACCCATACATGATAGCTTTTGGCGTGGCACAACTTTTCCTTTCTCAAATTCCAGATTTTCATAACATGTGGTGGCTCTCAATAGTTGCTGCAGTCATGTCTTTCTTCTATTCCACAATTGCTCTTGCTCTTGGAATTTCCAAAGTTGCAGGTTATATACCTACTTCAATTTGTTCGATACAAATTTTCACTTAATTTTTGGCTATTGTTTAATCAGCTGATACCCTTTGAAGTCTTGAACTATAGGTTTACTGCAGAAAACTTCTTACGGTTTAAAAATGTGGTGACATGATTTACTGAACCTATCAGATCACATGCAGAAAAGCCTACACAGTTTATAAGTTCAAGATGATATATTTTTGTAGTTGAGCTATAATTAAAGTTCATTCTTACATTTTATCTAATTTTGTTCAATTGGTTATGGAATAGAAAACGGTACTGTTATGGGTAGCCTCACAGGAGTAAGCGTCGGAACAGTGACCCCGGCCCAAAAAGTATGGGGGGTTTTCCAAGGTCTTGGAAACATCGCCTTTGCTTATTCATATTCTTTTGTTCTCCTGGAAATTCAGGTACACCTTTAATCTATTTGTAAAAAATTAAGAAAAGACAACATCATGTGCCAAATCATGTTAAATTTTAATATCTATTTAGAGAGAGATACAAAATTTAACATGACAATGCTGTGATATTTCAACCCCTATAGATTACTTACTAATGCTATAGGCACACATACCCCCTCACATGCTAAAGGTTTTTTATTTTATTTTTTTATAACCTCCTTATTTTTAAGGTGTTTTTTTATGAGAATTTTTTTTGTTCTTTACTCATTTGCCATTTTAGAAGTTAAAAATAACATTGATTACTATTTTATCAATTAAATTTTTATTTTCACCTAAGTACTGATAAGAAGAATTTACCAAGATATAGCCTTAATAGTTAAGGGTGCATATTAGGAAATTTAACAATAGTTTTAGTCTTGCATCACTTACATGTTGAGAGATGTGAGTATACAAATGTGTAACACGCTTTATCCAAACAAATCACTTACATGTTGAGAGATGTGAGTATACAAATGTGTAACACGCTTTATCCAAACAAATTAATGTCTAATCTAATTACACAGGACACAATCAAATCTCCACCATCAGAAGGAAAAGCAATGAAGAAAGCTGCGAAGCTAAGTATTGCAGTAACTACAACATTTTATCTGCTCTGTGGCTGCATGGGATATGCTGCTTTTGGAGACAATGCGCCAGGGAACCTGCTCGCCGGATTTGGTGTCTCAAAAGCATATTGGGTTGTAGATGCTGCTAATGCTGCTATCGTTATTCACCTTTTTGGAGCATACCAAGTGTATGCCCAACCCCTATTTGCCTTCGTCGAGAAAGAGGCAGCAAAAAAATGGCCCAAAATTGACAGAGAATTCAAAGTTAAAATCCCTGGTTTGCCAGTCTACAGTCAAAACATATTTACGTTAGTTTGGAGGACAGTGTTTGTTATCATCTCCACTCTCATCGCAATGTTGATTCCATTTTTCAACGACGTTTTGGGAGTGATTGGGGCATTGGGATTTTGGCCTTTAACTGTTTACTTTCCTGTGGAGATGTATATCGTACAAATGAAGATCCCAAAATGGAGTAGGAAGTGGATTATTCTGGAAATAATGAGTACTTTCTGCCTCATTGTATCTATTGTGGCTGGTCTTGGCTCATTGGTCGGTGTCTGGATCGACCTGCAGAAATACAAACCATTCAGCTTATCGAATTAA
Protein sequence

>MS.gene40928.t1

MVEHSSGTNLSYRGDIVGIEDGTSLHDSKYYDDDGRVKRTGTVWTTCSHIITAVIGSGVLSLAWSIAQMGWIAGPGSMIFFSIITLYTSSFLADCYRCGDTEFGKRNYTFMDAVSNILGGPSVKICGIVQYLNLFGSAIGYNIAAAMSMMEIRKSLCVHTSDGKDACHISGNPYMIAFGVAQLFLSQIPDFHNMWWLSIVAAVMSFFYSTIALALGISKVAENGTVMGSLTGVSVGTVTPAQKVWGVFQGLGNIAFAYSYSFVLLEIQDTIKSPPSEGKAMKKAAKLSIAVTTTFYLLCGCMGYAAFGDNAPGNLLAGFGVSKAYWVVDAANAAIVIHLFGAYQVYAQPLFAFVEKEAAKKWPKIDREFKVKIPGLPVYSQNIFTLVWRTVFVIISTLIAMLIPFFNDVLGVIGALGFWPLTVYFPVEMYIVQMKIPKWSRKWIILEIMSTFCLIVSIVAGLGSLVGVWIDLQKYKPFSLSN