AlfalfaGEDB | MS.gene41689

M. sativa cultivar XinJiangDaYe / MS.gene41689

KEGG: K21891
GO: GO:0003674 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0006873 GO:0006874 GO:0006875 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0019725 GO:0022803 GO:0022857 GO:0022890 GO:0030003 GO:0030176 GO:0031224 GO:0031227 GO:0031300 GO:0031301 GO:0032469 GO:0042592 GO:0046873 GO:0048878 GO:0050801 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0072503 GO:0072507 GO:0098771 GO:0110165
PFAM: PF01956.19

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41689.t1	XP_003624576.1	99.5	189	1	0	1	189	1	189	1.30E-98	369

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41689.t1	Q19714	47.9	163	84	1	12	174	4	165	4.6e-36	152.5

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41689.t1	B7FGM9	99.5	189	1	0	1	189	1	189	9.4e-99	369.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049807	MS.gene41689	0.814168	1.77E-51	-1.69E-46
MS.gene053144	MS.gene41689	0.811644	6.31E-51	-1.69E-46
MS.gene053536	MS.gene41689	0.826684	2.37E-54	-1.69E-46
MS.gene053538	MS.gene41689	0.83384	4.23E-56	-1.69E-46
MS.gene053540	MS.gene41689	0.820666	6.08E-53	-1.69E-46
MS.gene05894	MS.gene41689	0.818496	1.90E-52	-1.69E-46
MS.gene059424	MS.gene41689	0.830615	2.66E-55	-1.69E-46
MS.gene059900	MS.gene41689	-0.842837	2.03E-58	-1.69E-46
MS.gene060962	MS.gene41689	0.802336	5.89E-49	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene41689	MS.gene067770	PPI
MS.gene41689	MS.gene51910	PPI
MS.gene41689	MS.gene51947	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41689.t1	MTR_7g085050	99.471	189	1	0	1	189	1	189	1.55e-137	382

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41689.t1	AT5G06660	83.069	189	28	2	5	189	8	196	4.05e-102	292
MS.gene41689.t1	AT3G12030	83.069	189	28	2	5	189	8	196	7.39e-95	274

Find 54 sgRNAs with CRISPR-Local

Find 54 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTGGTTCTCTTTGTGGTATT+TGG	0.104469	7.2:+22595330	MS.gene41689:CDS
AAAAGGCTTGAATGGCAATT+TGG	0.263436	7.2:-22595388	None:intergenic
AAATTGCCATTCAAGCCTTT+TGG	0.268584	7.2:+22595390	MS.gene41689:CDS
TGGTTCTCTTTGTGGTATTT+GGG	0.271042	7.2:+22595331	MS.gene41689:CDS
AACAAATTTGCAGAAGTTCT+TGG	0.285687	7.2:+22595509	MS.gene41689:CDS
GAACTAGATCAACTGGTCTT+TGG	0.297367	7.2:-22595582	None:intergenic
CTTCATAGTCTCGAGTTTCT+TGG	0.298943	7.2:-22595181	None:intergenic
AACTAGATCAACTGGTCTTT+GGG	0.342623	7.2:-22595581	None:intergenic
CAAATTTGTTCTGATACTAA+TGG	0.343691	7.2:-22595496	None:intergenic
GGTTGCTCTGGTTCTCTTTG+TGG	0.348482	7.2:+22595323	MS.gene41689:CDS
CCGCCAAGGGGTGCAGGTGC+TGG	0.379709	7.2:+22595540	MS.gene41689:CDS
ACAAATTTGCAGAAGTTCTT+GGG	0.395345	7.2:+22595510	MS.gene41689:CDS
CTGGTCTTTGGGTCTGGCAT+TGG	0.395377	7.2:-22595570	None:intergenic
GCGAAGGTTCTTGTAAGAAT+TGG	0.409536	7.2:-22595139	None:intergenic
CATAACAGAACTAGATCAAC+TGG	0.415941	7.2:-22595589	None:intergenic
ATCCGGTGGTGTGGTTGCTC+TGG	0.434250	7.2:+22595311	MS.gene41689:CDS
TTTGCACCGCCAAGGGGTGC+AGG	0.441884	7.2:+22595534	MS.gene41689:CDS
TCTCTCTTCAAGTTTAAATC+CGG	0.442713	7.2:+22595294	MS.gene41689:CDS
CTTGGAAGCTTTGTCGATAG+AGG	0.450316	7.2:-22595163	None:intergenic
CTCGGATGGCCTCACTGTTG+TGG	0.453737	7.2:+22595056	MS.gene41689:CDS
CTGCTCAATTCGCTATTTGA+AGG	0.455366	7.2:+22595354	MS.gene41689:CDS
GATCAACTGGTCTTTGGGTC+TGG	0.458148	7.2:-22595576	None:intergenic
CCAGCACCTGCACCCCTTGG+CGG	0.467860	7.2:-22595540	None:intergenic
TCGGATGGCCTCACTGTTGT+GGG	0.468742	7.2:+22595057	MS.gene41689:CDS
CTTCTCAGATTTCAAGTACT+CGG	0.477023	7.2:+22595038	MS.gene41689:CDS
ACAAGCCCAAAAGGCTTGAA+TGG	0.484472	7.2:-22595396	None:intergenic
ATCTTCATAACAAGCCCAAA+AGG	0.485077	7.2:-22595405	None:intergenic
TTGTCTGTGAGGCCATCTCA+TGG	0.486509	7.2:+22595100	MS.gene41689:CDS
CTCTTCAAGTTTAAATCCGG+TGG	0.507122	7.2:+22595297	MS.gene41689:CDS
AGACCAGCACCTGCACCCCT+TGG	0.507589	7.2:-22595543	None:intergenic
CGAGTACTTGAAATCTGAGA+AGG	0.540066	7.2:-22595037	None:intergenic
AGTCACGACTAGATTCTTTG+AGG	0.544166	7.2:-22595269	None:intergenic
CAATTCGCTATTTGAAGGCA+AGG	0.549223	7.2:+22595359	MS.gene41689:CDS
TGTCTGTGAGGCCATCTCAT+GGG	0.550860	7.2:+22595101	MS.gene41689:CDS
CAAGTTTAAATCCGGTGGTG+TGG	0.561902	7.2:+22595302	MS.gene41689:CDS
AACCAGAGCAACCACACCAC+CGG	0.570086	7.2:-22595313	None:intergenic
TCAGATTTCAAGTACTCGGA+TGG	0.574798	7.2:+22595042	MS.gene41689:CDS
AAATGCCATGGAACAATCAG+TGG	0.579830	7.2:-22595457	None:intergenic
ATGAGCCATCGAGGGTTGCA+AGG	0.585212	7.2:+22595426	MS.gene41689:CDS
CTTTGTCGATAGAGGAGCGA+AGG	0.585269	7.2:-22595155	None:intergenic
CATTACCTTGCAACCCTCGA+TGG	0.592832	7.2:-22595431	None:intergenic
TGATCCCACTGATTGTTCCA+TGG	0.598157	7.2:+22595452	MS.gene41689:CDS
GTAAATAAGAACCCATGAGA+TGG	0.599701	7.2:-22595112	None:intergenic
TTCTGATACTAATGGAACAC+AGG	0.602611	7.2:-22595488	None:intergenic
CTGTACAGCTATTGTCTGTG+AGG	0.606267	7.2:+22595089	MS.gene41689:CDS
ATCTGAGAAGGGATATGCCA+TGG	0.607371	7.2:-22595025	None:intergenic
CAGGAAGTATAGAAATGCCA+TGG	0.612214	7.2:-22595469	None:intergenic
TTATGAAGATGAGCCATCGA+GGG	0.622078	7.2:+22595418	MS.gene41689:CDS
GAGTACTTGAAATCTGAGAA+GGG	0.629348	7.2:-22595036	None:intergenic
GGTTCTTGTAAGAATTGGTG+CGG	0.654185	7.2:-22595134	None:intergenic
CTTTGAGGCTAGTCTCAACA+CGG	0.657831	7.2:-22595254	None:intergenic
AATGCCATGGAACAATCAGT+GGG	0.668389	7.2:-22595456	None:intergenic
GTTATGAAGATGAGCCATCG+AGG	0.685544	7.2:+22595417	MS.gene41689:CDS
AAGAGATACCCACAACAGTG+AGG	0.718334	7.2:-22595065	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CAAATTTGTTCTGATACTAA+TGG	-	chr7.2:22595499-22595518	None:intergenic	25.0%
	AACAAATTTGCAGAAGTTCT+TGG	+	chr7.2:22595509-22595528	MS.gene41689:CDS	30.0%
	ACAAATTTGCAGAAGTTCTT+GGG	+	chr7.2:22595510-22595529	MS.gene41689:CDS	30.0%
!	TCTCTCTTCAAGTTTAAATC+CGG	+	chr7.2:22595294-22595313	MS.gene41689:CDS	30.0%
	AAAAGGCTTGAATGGCAATT+TGG	-	chr7.2:22595391-22595410	None:intergenic	35.0%
	ATCTTCATAACAAGCCCAAA+AGG	-	chr7.2:22595408-22595427	None:intergenic	35.0%
	GAGTACTTGAAATCTGAGAA+GGG	-	chr7.2:22595039-22595058	None:intergenic	35.0%
	GTAAATAAGAACCCATGAGA+TGG	-	chr7.2:22595115-22595134	None:intergenic	35.0%
	TGGTTCTCTTTGTGGTATTT+GGG	+	chr7.2:22595331-22595350	MS.gene41689:CDS	35.0%
	TTCTGATACTAATGGAACAC+AGG	-	chr7.2:22595491-22595510	None:intergenic	35.0%
!	AAATTGCCATTCAAGCCTTT+TGG	+	chr7.2:22595390-22595409	MS.gene41689:CDS	35.0%
!	AATTGCCATTCAAGCCTTTT+GGG	+	chr7.2:22595391-22595410	MS.gene41689:CDS	35.0%
!	CTTCTCAGATTTCAAGTACT+CGG	+	chr7.2:22595038-22595057	MS.gene41689:CDS	35.0%
!!!	CTCAACACGGTCAATTTTTT+TGG	-	chr7.2:22595244-22595263	None:intergenic	35.0%
	AAATGCCATGGAACAATCAG+TGG	-	chr7.2:22595460-22595479	None:intergenic	40.0%
	AATGCCATGGAACAATCAGT+GGG	-	chr7.2:22595459-22595478	None:intergenic	40.0%
	AGTCACGACTAGATTCTTTG+AGG	-	chr7.2:22595272-22595291	None:intergenic	40.0%
	CAATTCGCTATTTGAAGGCA+AGG	+	chr7.2:22595359-22595378	MS.gene41689:CDS	40.0%
	CGAGTACTTGAAATCTGAGA+AGG	-	chr7.2:22595040-22595059	None:intergenic	40.0%
	CTGCTCAATTCGCTATTTGA+AGG	+	chr7.2:22595354-22595373	MS.gene41689:CDS	40.0%
	CTTCATAGTCTCGAGTTTCT+TGG	-	chr7.2:22595184-22595203	None:intergenic	40.0%
	GCGAAGGTTCTTGTAAGAAT+TGG	-	chr7.2:22595142-22595161	None:intergenic	40.0%
	GGTTCTTGTAAGAATTGGTG+CGG	-	chr7.2:22595137-22595156	None:intergenic	40.0%
	TTATGAAGATGAGCCATCGA+GGG	+	chr7.2:22595418-22595437	MS.gene41689:CDS	40.0%
!	CAGGAAGTATAGAAATGCCA+TGG	-	chr7.2:22595472-22595491	None:intergenic	40.0%
!	CTCTTCAAGTTTAAATCCGG+TGG	+	chr7.2:22595297-22595316	MS.gene41689:CDS	40.0%
!	CTGGTTCTCTTTGTGGTATT+TGG	+	chr7.2:22595330-22595349	MS.gene41689:CDS	40.0%
!	TCAGATTTCAAGTACTCGGA+TGG	+	chr7.2:22595042-22595061	MS.gene41689:CDS	40.0%
	AAGAGATACCCACAACAGTG+AGG	-	chr7.2:22595068-22595087	None:intergenic	45.0%
	ACAAGCCCAAAAGGCTTGAA+TGG	-	chr7.2:22595399-22595418	None:intergenic	45.0%
	CAAGTTTAAATCCGGTGGTG+TGG	+	chr7.2:22595302-22595321	MS.gene41689:CDS	45.0%
	CTGTACAGCTATTGTCTGTG+AGG	+	chr7.2:22595089-22595108	MS.gene41689:CDS	45.0%
	GTTATGAAGATGAGCCATCG+AGG	+	chr7.2:22595417-22595436	MS.gene41689:CDS	45.0%
!	CTTGGAAGCTTTGTCGATAG+AGG	-	chr7.2:22595166-22595185	None:intergenic	45.0%
!	TGATCCCACTGATTGTTCCA+TGG	+	chr7.2:22595452-22595471	MS.gene41689:CDS	45.0%
!!	CTTTGAGGCTAGTCTCAACA+CGG	-	chr7.2:22595257-22595276	None:intergenic	45.0%
	CATTACCTTGCAACCCTCGA+TGG	-	chr7.2:22595434-22595453	None:intergenic	50.0%
	CTTTGTCGATAGAGGAGCGA+AGG	-	chr7.2:22595158-22595177	None:intergenic	50.0%
	TGTCTGTGAGGCCATCTCAT+GGG	+	chr7.2:22595101-22595120	MS.gene41689:CDS	50.0%
	TTGTCTGTGAGGCCATCTCA+TGG	+	chr7.2:22595100-22595119	MS.gene41689:CDS	50.0%
!!	GGTTGCTCTGGTTCTCTTTG+TGG	+	chr7.2:22595323-22595342	MS.gene41689:CDS	50.0%
	AACCAGAGCAACCACACCAC+CGG	-	chr7.2:22595316-22595335	None:intergenic	55.0%
	ATGAGCCATCGAGGGTTGCA+AGG	+	chr7.2:22595426-22595445	MS.gene41689:CDS	55.0%
	TCGGATGGCCTCACTGTTGT+GGG	+	chr7.2:22595057-22595076	MS.gene41689:CDS	55.0%
!	CTGGTCTTTGGGTCTGGCAT+TGG	-	chr7.2:22595573-22595592	None:intergenic	55.0%
!	CTTGGGTTTTGCACCGCCAA+GGG	+	chr7.2:22595527-22595546	MS.gene41689:CDS	55.0%
!	TCTTGGGTTTTGCACCGCCA+AGG	+	chr7.2:22595526-22595545	MS.gene41689:CDS	55.0%
!	TTGGGTTTTGCACCGCCAAG+GGG	+	chr7.2:22595528-22595547	MS.gene41689:CDS	55.0%
	ATCCGGTGGTGTGGTTGCTC+TGG	+	chr7.2:22595311-22595330	MS.gene41689:CDS	60.0%
	CTCGGATGGCCTCACTGTTG+TGG	+	chr7.2:22595056-22595075	MS.gene41689:CDS	60.0%
	AGACCAGCACCTGCACCCCT+TGG	-	chr7.2:22595546-22595565	None:intergenic	65.0%
!	TTTGCACCGCCAAGGGGTGC+AGG	+	chr7.2:22595534-22595553	MS.gene41689:CDS	65.0%
	CCAGCACCTGCACCCCTTGG+CGG	-	chr7.2:22595543-22595562	None:intergenic	70.0%
!	CCGCCAAGGGGTGCAGGTGC+TGG	+	chr7.2:22595540-22595559	MS.gene41689:CDS	75.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	22595027	22595596	22595027	ID=MS.gene41689
chr7.2	mRNA	22595027	22595596	22595027	ID=MS.gene41689.t1;Parent=MS.gene41689
chr7.2	exon	22595027	22595596	22595027	ID=MS.gene41689.t1.exon1;Parent=MS.gene41689.t1
chr7.2	CDS	22595027	22595596	22595027	ID=cds.MS.gene41689.t1;Parent=MS.gene41689.t1

Gene Sequence

>MS.gene41689

ATGGCATATCCCTTCTCAGATTTCAAGTACTCGGATGGCCTCACTGTTGTGGGTATCTCTTTCTGTACAGCTATTGTCTGTGAGGCCATCTCATGGGTTCTTATTTACCGCACCAATTCTTACAAGAACCTTCGCTCCTCTATCGACAAAGCTTCCAAGAAACTCGAGACTATGAAGACAGACAACAACAAAATCAACATTAAGAAGTCGAAGACCAAAAAAATTGACCGTGTTGAGACTAGCCTCAAAGAATCTAGTCGTGACTTGTCTCTCTTCAAGTTTAAATCCGGTGGTGTGGTTGCTCTGGTTCTCTTTGTGGTATTTGGGCTGCTCAATTCGCTATTTGAAGGCAAGGTAGTTGCCAAATTGCCATTCAAGCCTTTTGGGCTTGTTATGAAGATGAGCCATCGAGGGTTGCAAGGTAATGATCCCACTGATTGTTCCATGGCATTTCTATACTTCCTGTGTTCCATTAGTATCAGAACAAATTTGCAGAAGTTCTTGGGTTTTGCACCGCCAAGGGGTGCAGGTGCTGGTCTCTTTCCAATGCCAGACCCAAAGACCAGTTGA

Protein sequence

>MS.gene41689.t1

MAYPFSDFKYSDGLTVVGISFCTAIVCEAISWVLIYRTNSYKNLRSSIDKASKKLETMKTDNNKINIKKSKTKKIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGNDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAGAGLFPMPDPKTS