Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41927.t1 | XP_013452170.1 | 84.3 | 325 | 25 | 3 | 1 | 313 | 1 | 311 | 2.60E-135 | 491.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41927.t1 | Q9T072 | 42.7 | 213 | 98 | 6 | 105 | 312 | 111 | 304 | 9.2e-28 | 125.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41927.t1 | A0A072UAR9 | 84.3 | 325 | 25 | 3 | 1 | 313 | 1 | 311 | 1.9e-135 | 491.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41927.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049907 | MS.gene41927 | 0.843441 | 1.40E-58 | -1.69E-46 |
| MS.gene050520 | MS.gene41927 | 0.827456 | 1.55E-54 | -1.69E-46 |
| MS.gene051255 | MS.gene41927 | 0.838999 | 2.06E-57 | -1.69E-46 |
| MS.gene053018 | MS.gene41927 | 0.805965 | 1.03E-49 | -1.69E-46 |
| MS.gene053813 | MS.gene41927 | 0.833631 | 4.77E-56 | -1.69E-46 |
| MS.gene054196 | MS.gene41927 | 0.919946 | 2.38E-87 | -1.69E-46 |
| MS.gene056611 | MS.gene41927 | 0.817085 | 3.96E-52 | -1.69E-46 |
| MS.gene056942 | MS.gene41927 | 0.811264 | 7.64E-51 | -1.69E-46 |
| MS.gene059680 | MS.gene41927 | 0.811174 | 7.99E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene41927 | 0.824482 | 7.88E-54 | -1.69E-46 |
| MS.gene060356 | MS.gene41927 | 0.818831 | 1.60E-52 | -1.69E-46 |
| MS.gene060482 | MS.gene41927 | 0.812721 | 3.68E-51 | -1.69E-46 |
| MS.gene060837 | MS.gene41927 | 0.812756 | 3.61E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41927.t1 | MTR_6g047570 | 84.308 | 325 | 25 | 3 | 1 | 313 | 1 | 311 | 0.0 | 540 |
| MS.gene41927.t1 | MTR_6g047550 | 85.141 | 249 | 20 | 4 | 1 | 234 | 1 | 247 | 1.58e-140 | 400 |
| MS.gene41927.t1 | MTR_0011s0260 | 64.809 | 341 | 88 | 5 | 1 | 314 | 1 | 336 | 2.16e-137 | 396 |
| MS.gene41927.t1 | MTR_0011s0210 | 63.930 | 341 | 91 | 5 | 1 | 314 | 1 | 336 | 2.78e-134 | 388 |
| MS.gene41927.t1 | MTR_4g067010 | 59.697 | 330 | 84 | 9 | 1 | 314 | 1 | 297 | 6.40e-118 | 345 |
| MS.gene41927.t1 | MTR_4g066380 | 61.818 | 330 | 82 | 7 | 1 | 314 | 1 | 302 | 1.03e-117 | 345 |
| MS.gene41927.t1 | MTR_4g066460 | 58.140 | 344 | 75 | 7 | 1 | 314 | 1 | 305 | 1.65e-116 | 342 |
| MS.gene41927.t1 | MTR_0250s0040 | 61.017 | 295 | 56 | 5 | 23 | 313 | 1 | 240 | 1.27e-111 | 327 |
| MS.gene41927.t1 | MTR_0246s0020 | 54.821 | 363 | 105 | 7 | 1 | 313 | 1 | 354 | 2.74e-106 | 317 |
| MS.gene41927.t1 | MTR_0246s0020 | 54.396 | 364 | 107 | 7 | 1 | 314 | 1 | 355 | 5.17e-106 | 317 |
| MS.gene41927.t1 | MTR_4g098035 | 51.672 | 329 | 133 | 9 | 1 | 314 | 1 | 318 | 5.96e-95 | 287 |
| MS.gene41927.t1 | MTR_0246s0050 | 51.325 | 302 | 121 | 9 | 28 | 314 | 7 | 297 | 2.52e-85 | 261 |
| MS.gene41927.t1 | MTR_5g014560 | 42.475 | 299 | 113 | 10 | 25 | 314 | 36 | 284 | 2.25e-54 | 181 |
| MS.gene41927.t1 | MTR_5g014520 | 41.751 | 297 | 146 | 7 | 25 | 315 | 36 | 311 | 1.02e-53 | 181 |
| MS.gene41927.t1 | MTR_5g014600 | 35.398 | 339 | 160 | 11 | 8 | 313 | 2 | 314 | 1.15e-44 | 157 |
| MS.gene41927.t1 | MTR_4g009540 | 40.553 | 217 | 115 | 4 | 111 | 313 | 94 | 310 | 9.61e-43 | 151 |
| MS.gene41927.t1 | MTR_4g009540 | 39.908 | 218 | 117 | 4 | 111 | 314 | 94 | 311 | 5.62e-42 | 150 |
| MS.gene41927.t1 | MTR_4g092700 | 44.503 | 191 | 103 | 3 | 126 | 315 | 124 | 312 | 6.11e-39 | 142 |
| MS.gene41927.t1 | MTR_4g097920 | 46.154 | 156 | 80 | 2 | 159 | 313 | 138 | 290 | 5.07e-38 | 139 |
| MS.gene41927.t1 | MTR_4g097920 | 46.154 | 156 | 80 | 2 | 159 | 313 | 153 | 305 | 9.38e-38 | 138 |
| MS.gene41927.t1 | MTR_4g097940 | 46.795 | 156 | 79 | 3 | 159 | 313 | 153 | 305 | 4.94e-37 | 136 |
| MS.gene41927.t1 | MTR_2g010450 | 42.458 | 179 | 88 | 4 | 145 | 315 | 161 | 332 | 9.43e-37 | 136 |
| MS.gene41927.t1 | MTR_4g009110 | 37.333 | 225 | 117 | 6 | 111 | 314 | 109 | 330 | 1.58e-36 | 135 |
| MS.gene41927.t1 | MTR_2g104490 | 39.594 | 197 | 110 | 4 | 133 | 323 | 104 | 297 | 6.15e-36 | 133 |
| MS.gene41927.t1 | MTR_5g014640 | 44.937 | 158 | 84 | 2 | 156 | 313 | 149 | 303 | 3.41e-35 | 132 |
| MS.gene41927.t1 | MTR_2g104490 | 40.426 | 188 | 103 | 4 | 133 | 314 | 104 | 288 | 6.43e-35 | 130 |
| MS.gene41927.t1 | MTR_4g097950 | 45.977 | 174 | 79 | 4 | 151 | 313 | 60 | 229 | 1.47e-34 | 128 |
| MS.gene41927.t1 | MTR_2g104550 | 39.894 | 188 | 103 | 4 | 135 | 314 | 107 | 292 | 3.97e-34 | 128 |
| MS.gene41927.t1 | MTR_8g069740 | 38.764 | 178 | 104 | 4 | 141 | 314 | 91 | 267 | 4.28e-31 | 119 |
| MS.gene41927.t1 | MTR_8g009020 | 34.000 | 250 | 128 | 7 | 116 | 342 | 84 | 319 | 4.79e-31 | 120 |
| MS.gene41927.t1 | MTR_7g080780 | 35.922 | 206 | 110 | 4 | 138 | 343 | 130 | 313 | 8.17e-31 | 120 |
| MS.gene41927.t1 | MTR_7g080780 | 35.922 | 206 | 110 | 4 | 138 | 343 | 143 | 326 | 8.17e-31 | 120 |
| MS.gene41927.t1 | MTR_2g104560 | 37.209 | 172 | 95 | 5 | 149 | 314 | 41 | 205 | 1.40e-27 | 108 |
| MS.gene41927.t1 | MTR_5g014550 | 48.485 | 132 | 54 | 4 | 191 | 315 | 54 | 178 | 1.39e-25 | 102 |
| MS.gene41927.t1 | MTR_8g009010 | 33.953 | 215 | 88 | 5 | 117 | 313 | 73 | 251 | 2.95e-25 | 104 |
| MS.gene41927.t1 | MTR_2g104650 | 39.286 | 196 | 110 | 6 | 124 | 314 | 58 | 249 | 1.40e-24 | 102 |
| MS.gene41927.t1 | MTR_2g104500 | 34.722 | 216 | 121 | 6 | 110 | 314 | 46 | 252 | 3.74e-23 | 97.8 |
| MS.gene41927.t1 | MTR_2g104530 | 37.255 | 153 | 92 | 1 | 162 | 314 | 106 | 254 | 1.28e-22 | 96.7 |
| MS.gene41927.t1 | MTR_2g104590 | 35.443 | 158 | 76 | 4 | 161 | 314 | 69 | 204 | 1.07e-20 | 90.1 |
| MS.gene41927.t1 | MTR_1g072320 | 33.103 | 145 | 83 | 3 | 161 | 294 | 470 | 611 | 3.78e-17 | 83.6 |
| MS.gene41927.t1 | MTR_8g067280 | 33.673 | 196 | 101 | 7 | 140 | 315 | 436 | 622 | 6.42e-17 | 82.8 |
| MS.gene41927.t1 | MTR_5g030430 | 28.497 | 193 | 117 | 4 | 139 | 315 | 466 | 653 | 8.75e-15 | 76.3 |
| MS.gene41927.t1 | MTR_8g024790 | 29.677 | 155 | 90 | 5 | 147 | 290 | 277 | 423 | 2.17e-14 | 74.7 |
| MS.gene41927.t1 | MTR_4g009510 | 32.450 | 151 | 76 | 6 | 172 | 314 | 53 | 185 | 3.84e-14 | 71.2 |
| MS.gene41927.t1 | MTR_4g009420 | 32.576 | 132 | 71 | 3 | 184 | 315 | 65 | 178 | 7.66e-14 | 70.1 |
| MS.gene41927.t1 | MTR_7g451650 | 32.374 | 139 | 70 | 4 | 184 | 315 | 57 | 178 | 8.16e-14 | 69.7 |
| MS.gene41927.t1 | MTR_8g064700 | 26.471 | 204 | 133 | 7 | 117 | 310 | 202 | 398 | 1.40e-13 | 72.0 |
| MS.gene41927.t1 | MTR_4g009420 | 32.308 | 130 | 70 | 3 | 184 | 313 | 65 | 176 | 1.52e-13 | 69.3 |
| MS.gene41927.t1 | MTR_7g451650 | 32.117 | 137 | 69 | 4 | 184 | 313 | 57 | 176 | 3.70e-13 | 68.2 |
| MS.gene41927.t1 | MTR_8g098275 | 41.250 | 80 | 47 | 0 | 145 | 224 | 385 | 464 | 7.16e-13 | 70.1 |
| MS.gene41927.t1 | MTR_8g027495 | 50.000 | 64 | 32 | 0 | 161 | 224 | 458 | 521 | 7.52e-13 | 70.1 |
| MS.gene41927.t1 | MTR_8g098275 | 41.250 | 80 | 47 | 0 | 145 | 224 | 292 | 371 | 8.22e-13 | 70.1 |
| MS.gene41927.t1 | MTR_8g098275 | 41.250 | 80 | 47 | 0 | 145 | 224 | 228 | 307 | 8.94e-13 | 69.7 |
| MS.gene41927.t1 | MTR_8g024770 | 31.544 | 149 | 80 | 5 | 137 | 270 | 251 | 392 | 1.97e-12 | 68.6 |
| MS.gene41927.t1 | MTR_7g117670 | 51.724 | 58 | 28 | 0 | 161 | 218 | 402 | 459 | 2.74e-12 | 68.6 |
| MS.gene41927.t1 | MTR_3g498695 | 30.818 | 159 | 94 | 3 | 162 | 307 | 299 | 454 | 4.64e-12 | 67.4 |
| MS.gene41927.t1 | MTR_3g498695 | 30.818 | 159 | 94 | 3 | 162 | 307 | 299 | 454 | 4.90e-12 | 67.4 |
| MS.gene41927.t1 | MTR_3g030700 | 29.677 | 155 | 104 | 2 | 163 | 312 | 198 | 352 | 6.43e-12 | 66.6 |
| MS.gene41927.t1 | MTR_1g112680 | 31.214 | 173 | 88 | 7 | 140 | 282 | 295 | 466 | 8.52e-12 | 66.6 |
| MS.gene41927.t1 | MTR_7g050350 | 30.534 | 131 | 67 | 4 | 190 | 313 | 1 | 114 | 2.62e-11 | 61.2 |
| MS.gene41927.t1 | MTR_7g451650 | 30.534 | 131 | 67 | 4 | 190 | 313 | 1 | 114 | 2.62e-11 | 61.2 |
| MS.gene41927.t1 | MTR_7g096350 | 50.000 | 54 | 27 | 0 | 161 | 214 | 355 | 408 | 7.92e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41927.t1 | AT4G37850 | 42.723 | 213 | 98 | 6 | 105 | 312 | 111 | 304 | 7.04e-40 | 144 |
| MS.gene41927.t1 | AT4G37850 | 42.723 | 213 | 98 | 6 | 105 | 312 | 111 | 304 | 7.04e-40 | 144 |
| MS.gene41927.t1 | AT2G22760 | 40.909 | 176 | 92 | 4 | 151 | 315 | 102 | 276 | 3.98e-33 | 125 |
| MS.gene41927.t1 | AT2G22750 | 45.665 | 173 | 86 | 3 | 146 | 312 | 111 | 281 | 6.23e-33 | 125 |
| MS.gene41927.t1 | AT2G22750 | 45.665 | 173 | 86 | 3 | 146 | 312 | 139 | 309 | 6.96e-33 | 125 |
| MS.gene41927.t1 | AT2G22750 | 45.665 | 173 | 86 | 3 | 146 | 312 | 111 | 281 | 7.20e-33 | 125 |
| MS.gene41927.t1 | AT2G22750 | 45.665 | 173 | 86 | 3 | 146 | 312 | 139 | 309 | 7.70e-33 | 125 |
| MS.gene41927.t1 | AT2G22750 | 45.665 | 173 | 86 | 3 | 146 | 312 | 135 | 305 | 8.74e-33 | 125 |
| MS.gene41927.t1 | AT2G22760 | 40.805 | 174 | 91 | 4 | 151 | 313 | 102 | 274 | 1.92e-32 | 124 |
| MS.gene41927.t1 | AT2G22770 | 34.842 | 221 | 119 | 5 | 110 | 313 | 87 | 299 | 5.58e-29 | 115 |
| MS.gene41927.t1 | AT4G17880 | 33.125 | 160 | 92 | 3 | 161 | 315 | 416 | 565 | 4.53e-17 | 83.2 |
| MS.gene41927.t1 | AT5G46760 | 33.333 | 147 | 85 | 4 | 161 | 295 | 415 | 560 | 1.29e-15 | 78.6 |
| MS.gene41927.t1 | AT1G32640 | 31.646 | 158 | 98 | 3 | 161 | 315 | 452 | 602 | 2.66e-15 | 77.8 |
| MS.gene41927.t1 | AT1G63650 | 32.857 | 140 | 76 | 4 | 161 | 282 | 405 | 544 | 3.89e-14 | 74.3 |
| MS.gene41927.t1 | AT1G63650 | 32.857 | 140 | 76 | 4 | 161 | 282 | 405 | 544 | 3.89e-14 | 74.3 |
| MS.gene41927.t1 | AT1G63650 | 32.857 | 140 | 76 | 4 | 161 | 282 | 405 | 544 | 3.89e-14 | 74.3 |
| MS.gene41927.t1 | AT5G41315 | 30.345 | 145 | 78 | 4 | 161 | 282 | 441 | 585 | 6.67e-13 | 70.5 |
| MS.gene41927.t1 | AT5G41315 | 30.345 | 145 | 78 | 4 | 161 | 282 | 449 | 593 | 6.72e-13 | 70.5 |
| MS.gene41927.t1 | AT5G41315 | 30.345 | 145 | 78 | 4 | 161 | 282 | 446 | 590 | 7.33e-13 | 70.5 |
| MS.gene41927.t1 | AT4G09820 | 32.231 | 121 | 62 | 1 | 162 | 282 | 364 | 464 | 1.54e-12 | 69.3 |
| MS.gene41927.t1 | AT1G01260 | 36.842 | 95 | 57 | 1 | 161 | 255 | 433 | 524 | 2.77e-12 | 68.6 |
| MS.gene41927.t1 | AT1G01260 | 36.842 | 95 | 57 | 1 | 161 | 255 | 433 | 524 | 2.77e-12 | 68.6 |
| MS.gene41927.t1 | AT1G01260 | 36.842 | 95 | 57 | 1 | 161 | 255 | 433 | 524 | 2.77e-12 | 68.6 |
| MS.gene41927.t1 | AT2G46510 | 48.333 | 60 | 31 | 0 | 161 | 220 | 395 | 454 | 3.53e-12 | 68.2 |
| MS.gene41927.t1 | AT2G16910 | 30.968 | 155 | 85 | 5 | 162 | 294 | 315 | 469 | 1.47e-11 | 66.2 |
| MS.gene41927.t1 | AT4G16430 | 44.262 | 61 | 34 | 0 | 161 | 221 | 320 | 380 | 8.69e-11 | 63.5 |
Find 0 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATTGACAATTATTTT+TGG | - | 43356:162552-162571 | MS.gene41927:CDS | 10.0% |
| !!! | GAAAAATTATTTCTTTAAAA+AGG | - | 43356:161358-161377 | MS.gene41927:intron | 10.0% |
| !! | TTTATAATGAAAAACATTTG+TGG | + | 43356:161278-161297 | None:intergenic | 15.0% |
| !!! | AACTTTAAATAGTAAGTTTT+TGG | + | 43356:161384-161403 | None:intergenic | 15.0% |
| !!! | TCTCACAATTTTTATATTTT+TGG | - | 43356:162513-162532 | MS.gene41927:CDS | 15.0% |
| !!! | TTCTTTTTATGAAATAATCT+TGG | - | 43356:162019-162038 | MS.gene41927:CDS | 15.0% |
| !!! | TTTTCTTTTTTTTTTTCTTC+AGG | - | 43356:161469-161488 | MS.gene41927:intron | 15.0% |
| !! | ATCAAGTTATGAAACAAATT+TGG | - | 43356:161652-161671 | MS.gene41927:intron | 20.0% |
| !! | CAATATAATAGTAATAGTGA+TGG | + | 43356:162541-162560 | None:intergenic | 20.0% |
| !!! | AATCATTAATGAGTACTTTT+AGG | + | 43356:161332-161351 | None:intergenic | 20.0% |
| !!! | ATTTTTTTAAGCTCCATATT+TGG | + | 43356:161704-161723 | None:intergenic | 20.0% |
| !!! | TAAAAAGCGTTTGAAATTTT+TGG | - | 43356:162144-162163 | MS.gene41927:CDS | 20.0% |
| !!! | TAGGAAAATATATGTTGATT+CGG | - | 43356:162308-162327 | MS.gene41927:intron | 20.0% |
| !!! | TTACTTATTGTACCTTTTTA+AGG | + | 43356:161988-162007 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTCTTCAGGAAA+TGG | - | 43356:161475-161494 | MS.gene41927:intron | 20.0% |
| ! | AAATGTTAGTGGCAATTTAA+AGG | + | 43356:162488-162507 | None:intergenic | 25.0% |
| ! | AACTGAAAAGATGATTTAGA+TGG | + | 43356:161779-161798 | None:intergenic | 25.0% |
| ! | ATTAAGTGATTAAACTTTGC+AGG | + | 43356:162657-162676 | None:intergenic | 25.0% |
| ! | TCTAGTTAAAATTATGGTTG+AGG | - | 43356:162357-162376 | MS.gene41927:CDS | 25.0% |
| ! | TTAAGTGATTAAACTTTGCA+GGG | + | 43356:162656-162675 | None:intergenic | 25.0% |
| !! | AGGACTTCTAGTTAAAATTA+TGG | - | 43356:162351-162370 | MS.gene41927:CDS | 25.0% |
| !!! | ATTGTTGTTTGTTTTGTTCT+TGG | + | 43356:161592-161611 | None:intergenic | 25.0% |
| !!! | TGATTTTGATAAGCCAAATA+TGG | - | 43356:161688-161707 | MS.gene41927:intron | 25.0% |
| AAACAACAATGTTTCACTTC+GGG | - | 43356:161602-161621 | MS.gene41927:intron | 30.0% | |
| AAATTATGGTTGAGGTTCAA+AGG | - | 43356:162365-162384 | MS.gene41927:CDS | 30.0% | |
| AATAATAGTGTCTTACCCTT+TGG | - | 43356:162406-162425 | MS.gene41927:CDS | 30.0% | |
| ACGTCATCAAATTAGCAAAA+TGG | - | 43356:162700-162719 | MS.gene41927:CDS | 30.0% | |
| AGAAAAGAAAATGATAGCAG+GGG | + | 43356:162789-162808 | None:intergenic | 30.0% | |
| AGAGAAAAGAAAATGATAGC+AGG | + | 43356:162791-162810 | None:intergenic | 30.0% | |
| AGGAAGAAAATTGAAGAACA+CGG | - | 43356:163078-163097 | MS.gene41927:intron | 30.0% | |
| ATCAAATTAGCAAAATGGCA+TGG | - | 43356:162705-162724 | MS.gene41927:CDS | 30.0% | |
| CAAACAACAATGTTTCACTT+CGG | - | 43356:161601-161620 | MS.gene41927:intron | 30.0% | |
| GAGAAAAGAAAATGATAGCA+GGG | + | 43356:162790-162809 | None:intergenic | 30.0% | |
| GTGAGAGAAAAAAATGTTAG+TGG | + | 43356:162499-162518 | None:intergenic | 30.0% | |
| TAAGTGATTAAACTTTGCAG+GGG | + | 43356:162655-162674 | None:intergenic | 30.0% | |
| TACTAATTCCTCACAAAACT+TGG | - | 43356:161838-161857 | MS.gene41927:intron | 30.0% | |
| TACTGTATTGTAGATTCAAG+AGG | + | 43356:162926-162945 | None:intergenic | 30.0% | |
| TCAAATTAGCAAAATGGCAT+GGG | - | 43356:162706-162725 | MS.gene41927:CDS | 30.0% | |
| TCAGTTTCAAATTCCATCTT+TGG | - | 43356:161793-161812 | MS.gene41927:intron | 30.0% | |
| TCTACGATAGAATTTCCAAA+GGG | + | 43356:162424-162443 | None:intergenic | 30.0% | |
| TTCTTTGCAAGATGAATTAG+TGG | - | 43356:162998-163017 | MS.gene41927:intron | 30.0% | |
| ! | AAGAGTTAATCAAGTTGCTT+GGG | + | 43356:161241-161260 | None:intergenic | 30.0% |
| ! | CGAACATAATTTATTTGCTG+AGG | - | 43356:161499-161518 | MS.gene41927:intron | 30.0% |
| ! | TTTTGTGAGGAATTAGTAGT+GGG | + | 43356:161836-161855 | None:intergenic | 30.0% |
| !! | AATTAGTAGTGGGTGAATTT+GGG | + | 43356:161826-161845 | None:intergenic | 30.0% |
| !! | TGAAGAAAGTTTTGGTGAAA+AGG | + | 43356:161753-161772 | None:intergenic | 30.0% |
| !! | TGTTGATTTACCATTTCAAG+TGG | - | 43356:162273-162292 | MS.gene41927:intron | 30.0% |
| !! | TTTTGTTTCCAAGTTTTGTG+AGG | + | 43356:161849-161868 | None:intergenic | 30.0% |
| !!! | ATTTTGCTAATTTGATGACG+TGG | + | 43356:162701-162720 | None:intergenic | 30.0% |
| !!! | TATTGTACCTTTTTAAGGTC+AGG | + | 43356:161983-162002 | None:intergenic | 30.0% |
| AACAACAATGTTTCACTTCG+GGG | - | 43356:161603-161622 | MS.gene41927:intron | 35.0% | |
| AAGAAGGAAGAAGAAGGTAA+TGG | + | 43356:162829-162848 | None:intergenic | 35.0% | |
| AGAAGAAAGAAGGAAGAAGA+AGG | + | 43356:162835-162854 | None:intergenic | 35.0% | |
| ATACTTTGCTTAGTCAACGA+GGG | + | 43356:162746-162765 | None:intergenic | 35.0% | |
| ATTCTTGCTTCCACTTGAAA+TGG | + | 43356:162286-162305 | None:intergenic | 35.0% | |
| CAAAAACCTCAAAGAGCAAA+AGG | - | 43356:161864-161883 | MS.gene41927:CDS | 35.0% | |
| CAAAGAATCAAATCCACACT+TGG | + | 43356:162985-163004 | None:intergenic | 35.0% | |
| CGATTGCGTAAAAATGTGTT+AGG | - | 43356:162072-162091 | MS.gene41927:CDS | 35.0% | |
| GAATTTCCTTGATACAGATG+TGG | - | 43356:161532-161551 | MS.gene41927:intron | 35.0% | |
| GATGAGTTACTAAGAGATGT+GGG | + | 43356:161635-161654 | None:intergenic | 35.0% | |
| GTCTACGATAGAATTTCCAA+AGG | + | 43356:162425-162444 | None:intergenic | 35.0% | |
| TCATGGTCAAGATCATATCA+TGG | - | 43356:161898-161917 | MS.gene41927:CDS | 35.0% | |
| TCTTGTTCCTGACCTTAAAA+AGG | - | 43356:161973-161992 | MS.gene41927:CDS | 35.0% | |
| TGATGAGTTACTAAGAGATG+TGG | + | 43356:161636-161655 | None:intergenic | 35.0% | |
| TGCAAGATGAATTAGTGGTT+GGG | - | 43356:163003-163022 | MS.gene41927:intron | 35.0% | |
| TTGCAAGATGAATTAGTGGT+TGG | - | 43356:163002-163021 | MS.gene41927:intron | 35.0% | |
| TTGCGTAAAAATGTGTTAGG+TGG | - | 43356:162075-162094 | MS.gene41927:CDS | 35.0% | |
| ! | AAAAAAGGATTAGCGATTGC+AGG | + | 43356:162628-162647 | None:intergenic | 35.0% |
| ! | AAAAAGGATTAGCGATTGCA+GGG | + | 43356:162627-162646 | None:intergenic | 35.0% |
| ! | ATTGTTGTTGCTATTGCTGT+TGG | + | 43356:162876-162895 | None:intergenic | 35.0% |
| ! | GAAGAGTTAATCAAGTTGCT+TGG | + | 43356:161242-161261 | None:intergenic | 35.0% |
| ! | GTTTTGTGAGGAATTAGTAG+TGG | + | 43356:161837-161856 | None:intergenic | 35.0% |
| !! | ATTAGTAGTGGGTGAATTTG+GGG | + | 43356:161825-161844 | None:intergenic | 35.0% |
| !! | GAATTAGTAGTGGGTGAATT+TGG | + | 43356:161827-161846 | None:intergenic | 35.0% |
| !! | TGGTTGGGTTTTGATGTTTT+GGG | - | 43356:163018-163037 | MS.gene41927:intron | 35.0% |
| AAAAGGTCTCGTACTCATCA+TGG | - | 43356:161881-161900 | MS.gene41927:CDS | 40.0% | |
| AATTAGTCGCTCACCTTTGA+TGG | + | 43356:161112-161131 | None:intergenic | 40.0% | |
| ACTCTACCACATCTGTATCA+AGG | + | 43356:161541-161560 | None:intergenic | 40.0% | |
| AGACATTACCATCATTGCTC+AGG | - | 43356:162441-162460 | MS.gene41927:CDS | 40.0% | |
| AGTTTCTACCTGAGCAATGA+TGG | + | 43356:162452-162471 | None:intergenic | 40.0% | |
| ATTAGTCGCTCACCTTTGAT+GGG | + | 43356:161111-161130 | None:intergenic | 40.0% | |
| CAAATCAGATAACCAGCTGT+TGG | + | 43356:161024-161043 | None:intergenic | 40.0% | |
| CAACAGCTGGTTATCTGATT+TGG | - | 43356:161022-161041 | MS.gene41927:CDS | 40.0% | |
| CAAGTGGAAGCAAGAATCTT+AGG | - | 43356:162289-162308 | MS.gene41927:intron | 40.0% | |
| CATACTTTGCTTAGTCAACG+AGG | + | 43356:162747-162766 | None:intergenic | 40.0% | |
| CTTTGCAGGGGCAAAAAAAA+AGG | + | 43356:162643-162662 | None:intergenic | 40.0% | |
| GAAGCTTAACAAACCAAGTG+TGG | - | 43356:162969-162988 | MS.gene41927:intron | 40.0% | |
| GAGAAGAGGATGAAGAAGAA+AGG | - | 43356:163058-163077 | MS.gene41927:intron | 40.0% | |
| GAGTTTCTCTCACATGACAT+AGG | - | 43356:161557-161576 | MS.gene41927:intron | 40.0% | |
| TCAAAGGTGAGCGACTAATT+TGG | - | 43356:161112-161131 | MS.gene41927:CDS | 40.0% | |
| TTAGCAAAATGGCATGGGAA+TGG | - | 43356:162711-162730 | MS.gene41927:CDS | 40.0% | |
| ! | AAGGAAGAAGAAGGTAATGG+TGG | + | 43356:162826-162845 | None:intergenic | 40.0% |
| ! | CTAATGAAGCGCTCTTGTTA+GGG | + | 43356:161418-161437 | None:intergenic | 40.0% |
| ! | CTCGTTGACTAAGCAAAGTA+TGG | - | 43356:162745-162764 | MS.gene41927:CDS | 40.0% |
| ! | GATGGCGATGAAGAAAGTTT+TGG | + | 43356:161761-161780 | None:intergenic | 40.0% |
| ! | GTTTTTCGTCCCTGCAAATA+GGG | - | 43356:162584-162603 | MS.gene41927:CDS | 40.0% |
| ! | TGTTTTTCGTCCCTGCAAAT+AGG | - | 43356:162583-162602 | MS.gene41927:CDS | 40.0% |
| ! | TTGTTGCTATTGCTGTTGGT+GGG | + | 43356:162872-162891 | None:intergenic | 40.0% |
| ! | TTTTTCGTCCCTGCAAATAG+GGG | - | 43356:162585-162604 | MS.gene41927:CDS | 40.0% |
| !! | ATGACGTGGCATTGATTAAC+TGG | + | 43356:162687-162706 | None:intergenic | 40.0% |
| !! | CACTTGGTTTGTTAAGCTTC+TGG | + | 43356:162969-162988 | None:intergenic | 40.0% |
| !! | GTGGTTGGGTTTTGATGTTT+TGG | - | 43356:163017-163036 | MS.gene41927:intron | 40.0% |
| !! | TGACGTGGCATTGATTAACT+GGG | + | 43356:162686-162705 | None:intergenic | 40.0% |
| !!! | AGTACTTTTAGGACACTCGT+TGG | + | 43356:161321-161340 | None:intergenic | 40.0% |
| !!! | GGTTTTGATGTTTTGGGACA+CGG | - | 43356:163024-163043 | MS.gene41927:intron | 40.0% |
| AATACCGGATTCGATTCCCA+GGG | + | 43356:161178-161197 | None:intergenic | 45.0% | |
| AATCGAATCCGGTATTCCCT+GGG | - | 43356:161182-161201 | MS.gene41927:intron | 45.0% | |
| ACGTATCATCAACCAACAGC+TGG | - | 43356:161009-161028 | MS.gene41927:CDS | 45.0% | |
| CTAGAAGTCCTTTGTGCTCT+TGG | + | 43356:162342-162361 | None:intergenic | 45.0% | |
| GTTACTAAGAGATGTGGGAG+TGG | + | 43356:161630-161649 | None:intergenic | 45.0% | |
| TGCAAGGGCAATGAAGTTCT+GGG | + | 43356:161951-161970 | None:intergenic | 45.0% | |
| TTAAGCGACCCCTATTTGCA+GGG | + | 43356:162596-162615 | None:intergenic | 45.0% | |
| TTAGTGTTGTGACTGTGTCG+TGG | + | 43356:163314-163333 | None:intergenic | 45.0% | |
| TTTAAGCGACCCCTATTTGC+AGG | + | 43356:162597-162616 | None:intergenic | 45.0% | |
| ! | ACCTTTGATGGGTCGGAAAT+CGG | + | 43356:161100-161119 | None:intergenic | 45.0% |
| ! | ACGAGACCTTTTGCTCTTTG+AGG | + | 43356:161873-161892 | None:intergenic | 45.0% |
| ! | ATCCAATGCCAAGAGCACAA+AGG | - | 43356:162331-162350 | MS.gene41927:CDS | 45.0% |
| ! | CTAATTTGGCTCATGCGTAG+AGG | - | 43356:161126-161145 | MS.gene41927:CDS | 45.0% |
| ! | GAAGAAGAAGGTAATGGTGG+AGG | + | 43356:162823-162842 | None:intergenic | 45.0% |
| ! | GCTAATGAAGCGCTCTTGTT+AGG | + | 43356:161419-161438 | None:intergenic | 45.0% |
| ! | GTTGTTGCTATTGCTGTTGG+TGG | + | 43356:162873-162892 | None:intergenic | 45.0% |
| ! | TGTGACTGTGTTGACATTGC+CGG | + | 43356:163281-163300 | None:intergenic | 45.0% |
| ! | TGTTGCTATTGCTGTTGGTG+GGG | + | 43356:162871-162890 | None:intergenic | 45.0% |
| !! | TTTGGGGTGTTGTCCAAAGA+TGG | + | 43356:161809-161828 | None:intergenic | 45.0% |
| AATGCTCTCACGAGATGACG+AGG | + | 43356:162245-162264 | None:intergenic | 50.0% | |
| ACATTGCCGGCGTTTAAGAG+CGG | + | 43356:163268-163287 | None:intergenic | 50.0% | |
| AGGAGTTGTCATCGTTGCAG+AGG | + | 43356:162225-162244 | None:intergenic | 50.0% | |
| ATACCGGATTCGATTCCCAG+GGG | + | 43356:161177-161196 | None:intergenic | 50.0% | |
| CGGTTGCAGAAGAAGAGAAG+AGG | - | 43356:163044-163063 | MS.gene41927:intron | 50.0% | |
| CTGCAAGGGCAATGAAGTTC+TGG | + | 43356:161952-161971 | None:intergenic | 50.0% | |
| CTGTCCTGAACAATCTGAGG+CGG | - | 43356:163215-163234 | MS.gene41927:intron | 50.0% | |
| GAATACCGGATTCGATTCCC+AGG | + | 43356:161179-161198 | None:intergenic | 50.0% | |
| GAATCGAATCCGGTATTCCC+TGG | - | 43356:161181-161200 | MS.gene41927:intron | 50.0% | |
| GTCAGGAACAAGAGCTGCAA+GGG | + | 43356:161966-161985 | None:intergenic | 50.0% | |
| GTCCTTTGTGCTCTTGGCAT+TGG | + | 43356:162336-162355 | None:intergenic | 50.0% | |
| GTGGCAATGACCTCCTTTCA+AGG | + | 43356:161213-161232 | None:intergenic | 50.0% | |
| TCCTTTCAAGGACGTACCCA+GGG | + | 43356:161201-161220 | None:intergenic | 50.0% | |
| TGAAAGGAGGTCATTGCCAC+TGG | - | 43356:161213-161232 | MS.gene41927:intron | 50.0% | |
| TGCCTGTCCTGAACAATCTG+AGG | - | 43356:163212-163231 | MS.gene41927:intron | 50.0% | |
| ! | ACCGATTTCCGACCCATCAA+AGG | - | 43356:161096-161115 | MS.gene41927:CDS | 50.0% |
| ! | GTGGTGGGAGAGAAGAAAGA+AGG | + | 43356:162845-162864 | None:intergenic | 50.0% |
| ! | GTTGCTATTGCTGTTGGTGG+GGG | + | 43356:162870-162889 | None:intergenic | 50.0% |
| !! | CCTGGTTTGGTCAAGACTGT+CGG | + | 43356:162202-162221 | None:intergenic | 50.0% |
| AGGACGTACCCAGGGAATAC+CGG | + | 43356:161193-161212 | None:intergenic | 55.0% | |
| ATCGTTGCAGAGGCCTGGTT+TGG | + | 43356:162215-162234 | None:intergenic | 55.0% | |
| CAGGACAGGCAAGTGAGACA+AGG | + | 43356:163203-163222 | None:intergenic | 55.0% | |
| CCGACAGTCTTGACCAAACC+AGG | - | 43356:162199-162218 | MS.gene41927:CDS | 55.0% | |
| CGCCTCAGATTGTTCAGGAC+AGG | + | 43356:163217-163236 | None:intergenic | 55.0% | |
| CGTACCGCCTCAGATTGTTC+AGG | + | 43356:163222-163241 | None:intergenic | 55.0% | |
| CTCCTTTCAAGGACGTACCC+AGG | + | 43356:161202-161221 | None:intergenic | 55.0% | |
| CTGGGTACGTCCTTGAAAGG+AGG | - | 43356:161200-161219 | MS.gene41927:intron | 55.0% | |
| GGCAAGTGAGACAAGGCACA+CGG | + | 43356:163196-163215 | None:intergenic | 55.0% | |
| GGTCAGGAACAAGAGCTGCA+AGG | + | 43356:161967-161986 | None:intergenic | 55.0% | |
| TACCGGATTCGATTCCCAGG+GGG | + | 43356:161176-161195 | None:intergenic | 55.0% | |
| TCCCTGGGTACGTCCTTGAA+AGG | - | 43356:161197-161216 | MS.gene41927:intron | 55.0% | |
| TTCCCCCTGGGAATCGAATC+CGG | - | 43356:161171-161190 | MS.gene41927:intron | 55.0% | |
| TTGTCATCGTTGCAGAGGCC+TGG | + | 43356:162220-162239 | None:intergenic | 55.0% | |
| ! | CGAAGGCATGGTTGAGGTGA+CGG | + | 43356:163173-163192 | None:intergenic | 55.0% |
| ! | GTCGCTCACCTTTGATGGGT+CGG | + | 43356:161107-161126 | None:intergenic | 55.0% |
| ! | TCAAGTTGCTTGGGCTCCAG+TGG | + | 43356:161232-161251 | None:intergenic | 55.0% |
| !! | TTTAAGAGCGGTACCGGTGC+TGG | + | 43356:163256-163275 | None:intergenic | 55.0% |
| CCGGCGTTTAAGAGCGGTAC+CGG | + | 43356:163262-163281 | None:intergenic | 60.0% | |
| CCGGTACCGCTCTTAAACGC+CGG | - | 43356:163259-163278 | MS.gene41927:intron | 60.0% | |
| GGGGAACAACGCTTGGTCAG+TGG | + | 43356:161157-161176 | None:intergenic | 60.0% | |
| TGAGACAAGGCACACGGCGA+AGG | + | 43356:163190-163209 | None:intergenic | 60.0% | |
| TTACGACCGAGACCTGGCGA+CGG | + | 43356:163141-163160 | None:intergenic | 60.0% | |
| TTCCCAGGGGGAACAACGCT+TGG | + | 43356:161164-161183 | None:intergenic | 60.0% | |
| ! | ACACGGCGAAGGCATGGTTG+AGG | + | 43356:163179-163198 | None:intergenic | 60.0% |
| ! | ATGGTTGAGGTGACGGCAGG+CGG | + | 43356:163166-163185 | None:intergenic | 60.0% |
| ! | GACCAAGCGTTGTTCCCCCT+GGG | - | 43356:161159-161178 | MS.gene41927:intron | 60.0% |
| ! | GCTATTGCTGTTGGTGGGGG+CGG | + | 43356:162867-162886 | None:intergenic | 60.0% |
| ! | TGACCAAGCGTTGTTCCCCC+TGG | - | 43356:161158-161177 | MS.gene41927:intron | 60.0% |
| CAAGGCACACGGCGAAGGCA+TGG | + | 43356:163185-163204 | None:intergenic | 65.0% | |
| CGCAACCTCTGCTCCAGCAC+CGG | - | 43356:163240-163259 | MS.gene41927:intron | 65.0% | |
| GCGGAGTTACGACCGAGACC+TGG | + | 43356:163147-163166 | None:intergenic | 65.0% | |
| ! | ATTGCTGTTGGTGGGGGCGG+TGG | + | 43356:162864-162883 | None:intergenic | 65.0% |
| ! | GATAGAGTGCCACCGTCGCC+AGG | - | 43356:163126-163145 | MS.gene41927:intron | 65.0% |
| ! | GGCATGGTTGAGGTGACGGC+AGG | + | 43356:163169-163188 | None:intergenic | 65.0% |
| GTGCCACCGTCGCCAGGTCT+CGG | - | 43356:163132-163151 | MS.gene41927:intron | 70.0% | |
| ! | CTGTTGGTGGGGGCGGTGGT+GGG | + | 43356:162860-162879 | None:intergenic | 70.0% |
| !! | CGGTACCGGTGCTGGAGCAG+AGG | + | 43356:163248-163267 | None:intergenic | 70.0% |
| CGACCGAGACCTGGCGACGG+TGG | + | 43356:163138-163157 | None:intergenic | 75.0% | |
| ! | GCTGTTGGTGGGGGCGGTGG+TGG | + | 43356:162861-162880 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 43356 | gene | 160981 | 163333 | 160981 | ID=MS.gene41927 |
| 43356 | mRNA | 160981 | 163333 | 160981 | ID=MS.gene41927.t1;Parent=MS.gene41927 |
| 43356 | exon | 163271 | 163333 | 163271 | ID=MS.gene41927.t1.exon1;Parent=MS.gene41927.t1 |
| 43356 | CDS | 163271 | 163333 | 163271 | ID=cds.MS.gene41927.t1;Parent=MS.gene41927.t1 |
| 43356 | exon | 162320 | 162823 | 162320 | ID=MS.gene41927.t1.exon2;Parent=MS.gene41927.t1 |
| 43356 | CDS | 162320 | 162823 | 162320 | ID=cds.MS.gene41927.t1;Parent=MS.gene41927.t1 |
| 43356 | exon | 161852 | 162220 | 161852 | ID=MS.gene41927.t1.exon3;Parent=MS.gene41927.t1 |
| 43356 | CDS | 161852 | 162220 | 161852 | ID=cds.MS.gene41927.t1;Parent=MS.gene41927.t1 |
| 43356 | exon | 160981 | 161166 | 160981 | ID=MS.gene41927.t1.exon4;Parent=MS.gene41927.t1 |
| 43356 | CDS | 160981 | 161166 | 160981 | ID=cds.MS.gene41927.t1;Parent=MS.gene41927.t1 |
| Gene Sequence |
| Protein sequence |
