AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene054196

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054196.t1 MTR_6g047570 91.803 122 10 0 1 122 162 283 8.61e-76 230
MS.gene054196.t1 MTR_0250s0040 82.787 122 21 0 1 122 91 212 1.36e-67 207
MS.gene054196.t1 MTR_0011s0260 70.149 134 40 0 1 134 186 319 1.61e-58 187
MS.gene054196.t1 MTR_0011s0210 73.770 122 32 0 1 122 186 307 2.63e-57 184
MS.gene054196.t1 MTR_4g067010 69.672 122 34 1 1 122 150 268 2.33e-53 172
MS.gene054196.t1 MTR_4g066460 70.492 122 33 1 1 122 158 276 4.88e-50 164
MS.gene054196.t1 MTR_4g066380 72.131 122 30 1 1 122 156 273 4.00e-44 149
MS.gene054196.t1 MTR_0246s0020 58.273 139 53 1 1 134 201 339 6.26e-43 147
MS.gene054196.t1 MTR_0246s0020 58.273 139 53 1 1 134 201 339 6.33e-43 147
MS.gene054196.t1 MTR_6g047550 87.500 72 8 1 1 71 176 247 4.55e-33 119
MS.gene054196.t1 MTR_5g014560 53.175 126 51 3 1 122 134 255 2.08e-32 118
MS.gene054196.t1 MTR_0246s0050 53.659 123 48 2 1 122 154 268 7.93e-32 117
MS.gene054196.t1 MTR_4g098035 53.659 123 48 2 1 122 175 289 8.62e-32 117
MS.gene054196.t1 MTR_5g014520 51.639 122 59 0 1 122 160 281 2.63e-29 110
MS.gene054196.t1 MTR_5g014600 44.853 136 60 4 1 122 152 286 3.91e-28 107
MS.gene054196.t1 MTR_4g092700 43.357 143 77 3 1 140 161 302 2.02e-26 102
MS.gene054196.t1 MTR_4g097940 48.673 113 55 2 1 113 158 267 4.48e-26 102
MS.gene054196.t1 MTR_4g097920 46.903 113 57 1 1 113 143 252 1.81e-25 100
MS.gene054196.t1 MTR_4g097920 46.903 113 57 1 1 113 158 267 2.41e-25 100
MS.gene054196.t1 MTR_4g009540 40.000 125 69 1 1 119 155 279 3.43e-24 96.7
MS.gene054196.t1 MTR_4g097950 45.113 133 58 4 1 122 73 201 4.76e-24 95.1
MS.gene054196.t1 MTR_4g009540 40.000 125 69 1 1 119 155 279 5.48e-24 96.3
MS.gene054196.t1 MTR_2g104550 43.902 123 62 4 1 119 141 260 3.10e-23 94.4
MS.gene054196.t1 MTR_5g014640 40.940 149 77 3 1 149 157 294 3.64e-23 94.0
MS.gene054196.t1 MTR_2g104490 42.373 118 66 2 1 118 140 255 6.67e-23 92.8
MS.gene054196.t1 MTR_2g010450 39.716 141 70 4 1 133 180 313 6.84e-23 94.0
MS.gene054196.t1 MTR_2g104490 42.373 118 66 2 1 118 140 255 8.65e-23 92.8
MS.gene054196.t1 MTR_4g009110 38.525 122 72 1 1 119 177 298 9.29e-22 90.5
MS.gene054196.t1 MTR_8g069740 35.156 128 80 2 1 125 115 242 5.93e-19 82.0
MS.gene054196.t1 MTR_7g080780 40.678 118 61 2 1 118 155 263 4.76e-18 80.1
MS.gene054196.t1 MTR_7g080780 40.678 118 61 2 1 118 168 276 5.45e-18 80.1
MS.gene054196.t1 MTR_8g009020 37.984 129 69 4 1 120 146 272 1.70e-17 79.0
MS.gene054196.t1 MTR_2g104560 35.484 124 68 4 1 119 57 173 3.12e-16 73.9
MS.gene054196.t1 MTR_1g072320 34.351 131 72 2 1 120 473 600 5.12e-15 72.4
MS.gene054196.t1 MTR_8g024790 32.479 117 62 4 2 109 295 403 5.92e-14 69.3
MS.gene054196.t1 MTR_5g014550 41.228 114 53 4 28 134 54 160 7.25e-14 67.0
MS.gene054196.t1 MTR_8g067280 35.821 134 67 4 2 120 466 595 7.38e-14 69.3
MS.gene054196.t1 MTR_2g104590 36.111 108 64 2 1 104 72 178 9.42e-14 67.4
MS.gene054196.t1 MTR_8g009010 35.294 119 41 2 1 119 137 219 1.59e-13 67.8
MS.gene054196.t1 MTR_2g104650 37.037 135 68 2 1 125 97 224 4.32e-13 66.2
MS.gene054196.t1 MTR_8g027495 51.667 60 29 0 2 61 462 521 2.06e-12 65.1
MS.gene054196.t1 MTR_5g030430 29.231 130 81 1 2 120 497 626 4.45e-12 63.9
MS.gene054196.t1 MTR_8g024770 32.759 116 62 3 2 107 283 392 8.59e-12 63.2
MS.gene054196.t1 MTR_7g117670 53.704 54 25 0 2 55 406 459 9.93e-12 62.8
MS.gene054196.t1 MTR_1g112680 29.586 169 89 6 1 140 320 487 1.62e-11 62.4
MS.gene054196.t1 MTR_8g098275 47.541 61 32 0 1 61 311 371 4.34e-11 61.2
MS.gene054196.t1 MTR_8g098275 47.541 61 32 0 1 61 404 464 4.36e-11 61.2
MS.gene054196.t1 MTR_8g098275 47.541 61 32 0 1 61 247 307 4.57e-11 60.8
MS.gene054196.t1 MTR_2g104530 32.773 119 76 1 1 119 108 222 5.89e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene054196.t1 AT4G37850 49.600 125 59 2 1 122 155 278 1.79e-28 108
MS.gene054196.t1 AT4G37850 49.600 125 59 2 1 122 155 278 1.79e-28 108
MS.gene054196.t1 AT2G22750 44.531 128 64 2 1 122 129 255 3.80e-21 88.6
MS.gene054196.t1 AT2G22750 44.531 128 64 2 1 122 157 283 3.89e-21 89.0
MS.gene054196.t1 AT2G22750 44.531 128 64 2 1 122 157 283 3.93e-21 89.0
MS.gene054196.t1 AT2G22750 44.531 128 64 2 1 122 129 255 4.09e-21 88.2
MS.gene054196.t1 AT2G22750 44.531 128 64 2 1 122 153 279 4.47e-21 88.6
MS.gene054196.t1 AT2G22760 39.286 140 71 4 1 127 122 260 1.63e-19 83.6
MS.gene054196.t1 AT2G22760 39.286 140 71 4 1 127 122 260 1.82e-19 84.0
MS.gene054196.t1 AT2G22770 37.313 134 69 2 1 119 135 268 2.47e-16 75.5
MS.gene054196.t1 AT4G17880 35.772 123 69 2 2 119 420 537 2.42e-14 70.5
MS.gene054196.t1 AT1G63650 31.206 141 79 3 1 123 408 548 3.77e-14 70.1
MS.gene054196.t1 AT1G63650 31.206 141 79 3 1 123 408 548 3.77e-14 70.1
MS.gene054196.t1 AT1G63650 31.206 141 79 3 1 123 408 548 3.77e-14 70.1
MS.gene054196.t1 AT5G41315 30.556 144 77 4 3 123 446 589 1.37e-13 68.6
MS.gene054196.t1 AT5G41315 30.556 144 77 4 3 123 451 594 1.46e-13 68.2
MS.gene054196.t1 AT5G41315 30.556 144 77 4 3 123 454 597 1.49e-13 68.2
MS.gene054196.t1 AT5G46760 34.711 121 67 5 2 113 419 536 1.63e-13 68.2
MS.gene054196.t1 AT1G32640 33.884 121 75 2 2 119 456 574 1.30e-12 65.5
MS.gene054196.t1 AT4G09820 31.933 119 61 1 1 119 366 464 4.33e-12 63.9
MS.gene054196.t1 AT2G46510 46.970 66 32 1 2 64 399 464 4.56e-12 63.9
MS.gene054196.t1 AT1G01260 37.363 91 54 1 2 92 437 524 7.86e-12 63.2
MS.gene054196.t1 AT1G01260 37.363 91 54 1 2 92 437 524 7.86e-12 63.2
MS.gene054196.t1 AT1G01260 37.363 91 54 1 2 92 437 524 7.86e-12 63.2
MS.gene054196.t1 AT2G16910 31.915 141 74 5 1 119 317 457 5.15e-11 60.8

Find 40 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGACTTCTAGTTAAAATTA+TGG 0.257072 6.3:+41146965 MS.gene054196:CDS
TCTTGTTCCTGACCTTAAAA+AGG 0.279620 6.3:+41146587 MS.gene054196:CDS
CTGCAAGGGCAATGAAGTTC+TGG 0.289671 6.3:-41146563 None:intergenic
CAAGTGGAAGCAAGAATCTT+AGG 0.299386 6.3:+41146903 MS.gene054196:CDS
CTAGAAGTCCTTTGTGCTCT+TGG 0.306653 6.3:-41146953 None:intergenic
GTCCTTTGTGCTCTTGGCAT+TGG 0.348569 6.3:-41146947 None:intergenic
ATTCTTGCTTCCACTTGAAA+TGG 0.371460 6.3:-41146897 None:intergenic
TTTAAGAGCGGTACCGGTGC+TGG 0.402027 6.3:-41147867 None:intergenic
TTGTCATCGTTGCAGAGGCC+TGG 0.416904 6.3:-41146831 None:intergenic
ATCGTTGCAGAGGCCTGGTT+TGG 0.420748 6.3:-41146826 None:intergenic
TAGGAAAATATATGTTGATT+CGG 0.438258 6.3:+41146922 MS.gene054196:CDS
CGTACCGCCTCAGATTGTTC+AGG 0.451345 6.3:-41147833 None:intergenic
TCTAGTTAAAATTATGGTTG+AGG 0.471353 6.3:+41146971 MS.gene054196:CDS
TGTGACTGTGTTGACATTGC+CGG 0.471891 6.3:-41147892 None:intergenic
CCGGCGTTTAAGAGCGGTAC+CGG 0.479720 6.3:-41147873 None:intergenic
TGCAAGGGCAATGAAGTTCT+GGG 0.487137 6.3:-41146562 None:intergenic
CGCCTCAGATTGTTCAGGAC+AGG 0.496047 6.3:-41147828 None:intergenic
CGCAACCTCTGCTCCAGCAC+CGG 0.507875 6.3:+41147854 MS.gene054196:CDS
GTCAGGAACAAGAGCTGCAA+GGG 0.510601 6.3:-41146577 None:intergenic
CGAAGGCATGGTTGAGGTGA+CGG 0.512330 6.3:-41147784 None:intergenic
CCGACAGTCTTGACCAAACC+AGG 0.533500 6.3:+41146813 MS.gene054196:CDS
GGCATGGTTGAGGTGACGGC+AGG 0.535971 6.3:-41147780 None:intergenic
ATGGTTGAGGTGACGGCAGG+CGG 0.544059 6.3:-41147777 None:intergenic
CAAGGCACACGGCGAAGGCA+TGG 0.559191 6.3:-41147796 None:intergenic
CGGTACCGGTGCTGGAGCAG+AGG 0.574508 6.3:-41147859 None:intergenic
TGTTGATTTACCATTTCAAG+TGG 0.584256 6.3:+41146887 MS.gene054196:CDS
CCTGGTTTGGTCAAGACTGT+CGG 0.595636 6.3:-41146813 None:intergenic
CCGGTACCGCTCTTAAACGC+CGG 0.596941 6.3:+41147873 MS.gene054196:CDS
ACACGGCGAAGGCATGGTTG+AGG 0.597922 6.3:-41147790 None:intergenic
GGCAAGTGAGACAAGGCACA+CGG 0.597948 6.3:-41147807 None:intergenic
TGCCTGTCCTGAACAATCTG+AGG 0.600852 6.3:+41147826 MS.gene054196:CDS
ACATTGCCGGCGTTTAAGAG+CGG 0.603747 6.3:-41147879 None:intergenic
GGTCAGGAACAAGAGCTGCA+AGG 0.614039 6.3:-41146578 None:intergenic
TGAGACAAGGCACACGGCGA+AGG 0.616218 6.3:-41147801 None:intergenic
CAGGACAGGCAAGTGAGACA+AGG 0.621763 6.3:-41147814 None:intergenic
AGGAGTTGTCATCGTTGCAG+AGG 0.632418 6.3:-41146836 None:intergenic
TTAGTGTTGTGACTGTGTCG+TGG 0.633565 6.3:-41147925 None:intergenic
AATGCTCTCACGAGATGACG+AGG 0.648104 6.3:-41146856 None:intergenic
CTGTCCTGAACAATCTGAGG+CGG 0.658080 6.3:+41147829 MS.gene054196:CDS
ATCCAATGCCAAGAGCACAA+AGG 0.699971 6.3:+41146945 MS.gene054196:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATATTGACAATTATTTT+TGG + chr6.3:41147166-41147185 MS.gene054196:intron 10.0%
!!! TCTCACAATTTTTATATTTT+TGG + chr6.3:41147127-41147146 MS.gene054196:intron 15.0%
!!! TTCTTTTTATGAAATAATCT+TGG + chr6.3:41146633-41146652 MS.gene054196:intron 15.0%
!! CAATATAATAGTAATAGTGA+TGG - chr6.3:41147155-41147174 None:intergenic 20.0%
!!! TAAAAAGCGTTTGAAATTTT+TGG + chr6.3:41146758-41146777 MS.gene054196:CDS 20.0%
!!! TAGGAAAATATATGTTGATT+CGG + chr6.3:41146922-41146941 MS.gene054196:CDS 20.0%
!!! TTACTTATTGTACCTTTTTA+AGG - chr6.3:41146602-41146621 None:intergenic 20.0%
! AAATGTTAGTGGCAATTTAA+AGG - chr6.3:41147102-41147121 None:intergenic 25.0%
! ATTAAGTGATTAAACTTTGC+AGG - chr6.3:41147271-41147290 None:intergenic 25.0%
! GTGAGAAAAAAAAATGTTAG+TGG - chr6.3:41147113-41147132 None:intergenic 25.0%
! TCTAGTTAAAATTATGGTTG+AGG + chr6.3:41146971-41146990 MS.gene054196:CDS 25.0%
! TTAAGTGATTAAACTTTGCA+GGG - chr6.3:41147270-41147289 None:intergenic 25.0%
!! AGGACTTCTAGTTAAAATTA+TGG + chr6.3:41146965-41146984 MS.gene054196:CDS 25.0%
AAATTATGGTTGAGGTTCAA+AGG + chr6.3:41146979-41146998 MS.gene054196:intron 30.0%
AATAATAGTGTCTTACCCTT+TGG + chr6.3:41147020-41147039 MS.gene054196:intron 30.0%
ACGTCATCAAATTAGCAAAA+TGG + chr6.3:41147314-41147333 MS.gene054196:intron 30.0%
AGAAAAGAAAATGATAGCAG+GGG - chr6.3:41147403-41147422 None:intergenic 30.0%
AGAGAAAAGAAAATGATAGC+AGG - chr6.3:41147405-41147424 None:intergenic 30.0%
AGGAAGAAAATTGAAGAACA+CGG + chr6.3:41147692-41147711 MS.gene054196:intron 30.0%
ATCAAATTAGCAAAATGGCA+TGG + chr6.3:41147319-41147338 MS.gene054196:intron 30.0%
GAGAAAAGAAAATGATAGCA+GGG - chr6.3:41147404-41147423 None:intergenic 30.0%
TAAGTGATTAAACTTTGCAG+GGG - chr6.3:41147269-41147288 None:intergenic 30.0%
TACTGTATTGTAGATTCAAG+AGG - chr6.3:41147540-41147559 None:intergenic 30.0%
TCAAATTAGCAAAATGGCAT+GGG + chr6.3:41147320-41147339 MS.gene054196:intron 30.0%
TCTACGATAGAATTTCCAAA+GGG - chr6.3:41147038-41147057 None:intergenic 30.0%
TTCTTTGCAAGATGAATTAG+TGG + chr6.3:41147612-41147631 MS.gene054196:intron 30.0%
!! TGTTGATTTACCATTTCAAG+TGG + chr6.3:41146887-41146906 MS.gene054196:CDS 30.0%
!!! ATTTTGCTAATTTGATGACG+TGG - chr6.3:41147315-41147334 None:intergenic 30.0%
!!! TATTGTACCTTTTTAAGGTC+AGG - chr6.3:41146597-41146616 None:intergenic 30.0%
AAGAAGGAAGAAGAAGGTAA+TGG - chr6.3:41147443-41147462 None:intergenic 35.0%
AGAAGAAAGAAGGAAGAAGA+AGG - chr6.3:41147449-41147468 None:intergenic 35.0%
AGACATTACCATCATTGCTT+AGG + chr6.3:41147055-41147074 MS.gene054196:intron 35.0%
AGTTTCTACCTAAGCAATGA+TGG - chr6.3:41147066-41147085 None:intergenic 35.0%
ATACTTTGCTTAGTCAACGA+GGG - chr6.3:41147360-41147379 None:intergenic 35.0%
ATTCTTGCTTCCACTTGAAA+TGG - chr6.3:41146900-41146919 None:intergenic 35.0%
CAAAGAATCAAATCCACACT+TGG - chr6.3:41147599-41147618 None:intergenic 35.0%
CGATTGCGTAAAAATGTGTT+AGG + chr6.3:41146686-41146705 MS.gene054196:intron 35.0%
GTCTACGATAGAATTTCCAA+AGG - chr6.3:41147039-41147058 None:intergenic 35.0%
TCTTGTTCCTGACCTTAAAA+AGG + chr6.3:41146587-41146606 MS.gene054196:CDS 35.0%
TGCAAGATGAATTAGTGGTT+GGG + chr6.3:41147617-41147636 MS.gene054196:intron 35.0%
TTGCAAGATGAATTAGTGGT+TGG + chr6.3:41147616-41147635 MS.gene054196:intron 35.0%
TTGCGTAAAAATGTGTTAGG+TGG + chr6.3:41146689-41146708 MS.gene054196:intron 35.0%
! AAAAAAGGATTAGCGATTGC+AGG - chr6.3:41147242-41147261 None:intergenic 35.0%
! AAAAAGGATTAGCGATTGCA+GGG - chr6.3:41147241-41147260 None:intergenic 35.0%
! ATTGTTGTTGCTATTGCTGT+TGG - chr6.3:41147490-41147509 None:intergenic 35.0%
!! TGGTTGGGTTTTGATGTTTT+GGG + chr6.3:41147632-41147651 MS.gene054196:intron 35.0%
CAAGTGGAAGCAAGAATCTT+AGG + chr6.3:41146903-41146922 MS.gene054196:CDS 40.0%
CATACTTTGCTTAGTCAACG+AGG - chr6.3:41147361-41147380 None:intergenic 40.0%
CTTTGCAGGGGCAAAAAAAA+AGG - chr6.3:41147257-41147276 None:intergenic 40.0%
GAAGCTTAACAAACCAAGTG+TGG + chr6.3:41147583-41147602 MS.gene054196:intron 40.0%
GAGAAGAGGATGAAGAAGAA+AGG + chr6.3:41147672-41147691 MS.gene054196:intron 40.0%
TTAGCAAAATGGCATGGGAA+TGG + chr6.3:41147325-41147344 MS.gene054196:intron 40.0%
! AAGGAAGAAGAAGGTAATGG+TGG - chr6.3:41147440-41147459 None:intergenic 40.0%
! CTCGTTGACTAAGCAAAGTA+TGG + chr6.3:41147359-41147378 MS.gene054196:intron 40.0%
! GTTTTTCGTCCCTGCAAATA+GGG + chr6.3:41147198-41147217 MS.gene054196:intron 40.0%
! TGTTTTTCGTCCCTGCAAAT+AGG + chr6.3:41147197-41147216 MS.gene054196:intron 40.0%
! TTGTTGCTATTGCTGTTGGT+GGG - chr6.3:41147486-41147505 None:intergenic 40.0%
! TTTTTCGTCCCTGCAAATAG+GGG + chr6.3:41147199-41147218 MS.gene054196:intron 40.0%
!! ATGACGTGGCATTGATTAAC+TGG - chr6.3:41147301-41147320 None:intergenic 40.0%
!! CACTTGGTTTGTTAAGCTTC+TGG - chr6.3:41147583-41147602 None:intergenic 40.0%
!! GTGGTTGGGTTTTGATGTTT+TGG + chr6.3:41147631-41147650 MS.gene054196:intron 40.0%
!! TGACGTGGCATTGATTAACT+GGG - chr6.3:41147300-41147319 None:intergenic 40.0%
!!! GGTTTTGATGTTTTGGGACA+CGG + chr6.3:41147638-41147657 MS.gene054196:intron 40.0%
CTAGAAGTCCTTTGTGCTCT+TGG - chr6.3:41146956-41146975 None:intergenic 45.0%
TGCAAGGGCAATGAAGTTCT+GGG - chr6.3:41146565-41146584 None:intergenic 45.0%
TTAAGCGACCCCTATTTGCA+GGG - chr6.3:41147210-41147229 None:intergenic 45.0%
TTAGTGTTGTGACTGTGTCG+TGG - chr6.3:41147928-41147947 None:intergenic 45.0%
TTTAAGCGACCCCTATTTGC+AGG - chr6.3:41147211-41147230 None:intergenic 45.0%
! ATCCAATGCCAAGAGCACAA+AGG + chr6.3:41146945-41146964 MS.gene054196:CDS 45.0%
! GAAGAAGAAGGTAATGGTGG+AGG - chr6.3:41147437-41147456 None:intergenic 45.0%
! GTTGTTGCTATTGCTGTTGG+TGG - chr6.3:41147487-41147506 None:intergenic 45.0%
! TGTGACTGTGTTGACATTGC+CGG - chr6.3:41147895-41147914 None:intergenic 45.0%
! TGTTGCTATTGCTGTTGGTG+GGG - chr6.3:41147485-41147504 None:intergenic 45.0%
AATGCTCTCACGAGATGACG+AGG - chr6.3:41146859-41146878 None:intergenic 50.0%
ACATTGCCGGCGTTTAAGAG+CGG - chr6.3:41147882-41147901 None:intergenic 50.0%
AGGAGTTGTCATCGTTGCAG+AGG - chr6.3:41146839-41146858 None:intergenic 50.0%
CGGTTGCAGAAGAAGAGAAG+AGG + chr6.3:41147658-41147677 MS.gene054196:intron 50.0%
CTGCAAGGGCAATGAAGTTC+TGG - chr6.3:41146566-41146585 None:intergenic 50.0%
CTGTCCTGAACAATCTGAGG+CGG + chr6.3:41147829-41147848 MS.gene054196:CDS 50.0%
GTCAGGAACAAGAGCTGCAA+GGG - chr6.3:41146580-41146599 None:intergenic 50.0%
GTCCTTTGTGCTCTTGGCAT+TGG - chr6.3:41146950-41146969 None:intergenic 50.0%
TGCCTGTCCTGAACAATCTG+AGG + chr6.3:41147826-41147845 MS.gene054196:CDS 50.0%
! GTGGTGGGAGAGAAGAAAGA+AGG - chr6.3:41147459-41147478 None:intergenic 50.0%
! GTTGCTATTGCTGTTGGTGG+GGG - chr6.3:41147484-41147503 None:intergenic 50.0%
!! CCTGGTTTGGTCAAGACTGT+CGG - chr6.3:41146816-41146835 None:intergenic 50.0%
ATCGTTGCAGAGGCCTGGTT+TGG - chr6.3:41146829-41146848 None:intergenic 55.0%
CAGGACAGGCAAGTGAGACA+AGG - chr6.3:41147817-41147836 None:intergenic 55.0%
CCGACAGTCTTGACCAAACC+AGG + chr6.3:41146813-41146832 MS.gene054196:CDS 55.0%
CGCCTCAGATTGTTCAGGAC+AGG - chr6.3:41147831-41147850 None:intergenic 55.0%
CGTACCGCCTCAGATTGTTC+AGG - chr6.3:41147836-41147855 None:intergenic 55.0%
GGCAAGTGAGACAAGGCACA+CGG - chr6.3:41147810-41147829 None:intergenic 55.0%
GGTCAGGAACAAGAGCTGCA+AGG - chr6.3:41146581-41146600 None:intergenic 55.0%
TTGTCATCGTTGCAGAGGCC+TGG - chr6.3:41146834-41146853 None:intergenic 55.0%
! CGAAGGCATGGTTGAGGTGA+CGG - chr6.3:41147787-41147806 None:intergenic 55.0%
!! TTTAAGAGCGGTACCGGTGC+TGG - chr6.3:41147870-41147889 None:intergenic 55.0%
CCGGCGTTTAAGAGCGGTAC+CGG - chr6.3:41147876-41147895 None:intergenic 60.0%
CCGGTACCGCTCTTAAACGC+CGG + chr6.3:41147873-41147892 MS.gene054196:CDS 60.0%
TGAGACAAGGCACACGGCGA+AGG - chr6.3:41147804-41147823 None:intergenic 60.0%
TTACGACCGAGACCTGGCGA+CGG - chr6.3:41147755-41147774 None:intergenic 60.0%
! ACACGGCGAAGGCATGGTTG+AGG - chr6.3:41147793-41147812 None:intergenic 60.0%
! ATGGTTGAGGTGACGGCAGG+CGG - chr6.3:41147780-41147799 None:intergenic 60.0%
! GCTATTGCTGTTGGTGGGGG+CGG - chr6.3:41147481-41147500 None:intergenic 60.0%
CAAGGCACACGGCGAAGGCA+TGG - chr6.3:41147799-41147818 None:intergenic 65.0%
CGCAACCTCTGCTCCAGCAC+CGG + chr6.3:41147854-41147873 MS.gene054196:CDS 65.0%
GCGGAGTTACGACCGAGACC+TGG - chr6.3:41147761-41147780 None:intergenic 65.0%
! ATTGCTGTTGGTGGGGGCGG+TGG - chr6.3:41147478-41147497 None:intergenic 65.0%
! GATAGAGTGCCACCGTCGCC+AGG + chr6.3:41147740-41147759 MS.gene054196:intron 65.0%
! GGCATGGTTGAGGTGACGGC+AGG - chr6.3:41147783-41147802 None:intergenic 65.0%
GTGCCACCGTCGCCAGGTCT+CGG + chr6.3:41147746-41147765 MS.gene054196:intron 70.0%
! CTGTTGGTGGGGGCGGTGGT+GGG - chr6.3:41147474-41147493 None:intergenic 70.0%
!! CGGTACCGGTGCTGGAGCAG+AGG - chr6.3:41147862-41147881 None:intergenic 70.0%
CGACCGAGACCTGGCGACGG+TGG - chr6.3:41147752-41147771 None:intergenic 75.0%
! GCTGTTGGTGGGGGCGGTGG+TGG - chr6.3:41147475-41147494 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 41146531 41147947 41146531 ID=MS.gene054196
chr6.3 mRNA 41146531 41147947 41146531 ID=MS.gene054196.t1;Parent=MS.gene054196
chr6.3 exon 41146531 41146608 41146531 ID=MS.gene054196.t1.exon1;Parent=MS.gene054196.t1
chr6.3 CDS 41146531 41146608 41146531 ID=cds.MS.gene054196.t1;Parent=MS.gene054196.t1
chr6.3 exon 41146708 41146992 41146708 ID=MS.gene054196.t1.exon2;Parent=MS.gene054196.t1
chr6.3 CDS 41146708 41146992 41146708 ID=cds.MS.gene054196.t1;Parent=MS.gene054196.t1
chr6.3 exon 41147762 41147947 41147762 ID=MS.gene054196.t1.exon3;Parent=MS.gene054196.t1
chr6.3 CDS 41147762 41147947 41147762 ID=cds.MS.gene054196.t1;Parent=MS.gene054196.t1
Gene Sequence

>MS.gene054196

ATGGCTGAGAGAAAGAGAAGAGAGAAACTCACCCAGAACTTCATTGCCCTTGCAGCTCTTGTTCCTGACCTTAAAAAGGTACAATAAGTAATTTTCTCATGTTTCTTTTTATGAAATAATCTTGGTTACTATTTTGTGTCACACTACTCACTAATCGATTGCGTAAAAATGTGTTAGGTGGACAAGTATTCTGTATTAGTTGACACTATCAAATACTTGAAAGAACTTAAAAAGCGTTTGAAATTTTTGGAAGAACAAAATGAGAAAACAAAAATAGAGTCACCGACAGTCTTGACCAAACCAGGCCTCTGCAACGATGACAACTCCTCGTCATCTCGTGAGAGCATTGATTGTGTTGTTGATTTACCATTTCAAGTGGAAGCAAGAATCTTAGGAAAATATATGTTGATTCGGATCCAATGCCAAGAGCACAAAGGACTTCTAGTTAAAATTATGGTTGAGGTTCAAAGGTTTCAACTATTTGTTGTCAATAATAGTGTCTTACCCTTTGGAAATTCTATCGTAGACATTACCATCATTGCTTAGGTAGAAACTATCTCTCTATCTACCTTTAAATTGCCACTAACATTTTTTTTTCTCACAATTTTTATATTTTTGGTGCCATCACTATTACTATTATATTGACAATTATTTTTGGCTTAAATATGTTTTTCGTCCCTGCAAATAGGGGTCGCTTAAAATTTCGTCCCTGCAATCGCTAATCCTTTTTTTTTGCCCCTGCAAAGTTTAATCACTTAATCTTTGACCCAGTTAATCAATGCCACGTCATCAAATTAGCAAAATGGCATGGGAATGGACAAAAATACCCTCGTTGACTAAGCAAAGTATGGCTTGAAGTGACGAAAATACCCCTGCTATCATTTTCTTTTCTCTTTTACTGCTCCTCCACCATTACCTTCTTCTTCCTTCTTTCTTCTCTCCCACCACCGCCCCCACCAACAGCAATAGCAACAACAATAAATTTTCTCAAATTTGTGACAATCTACCTCTTGAATCTACAATACAGTAACAACAAGAGAATGCGATCACCAGAAGCTTAACAAACCAAGTGTGGATTTGATTCTTTGCAAGATGAATTAGTGGTTGGGTTTTGATGTTTTGGGACACGGTTGCAGAAGAAGAGAAGAGGATGAAGAAGAAAGGAAGAAAATTGAAGAACACGGTCACAGAAGAAGAGAAGAAAGAGAAGATAGAGTGCCACCGTCGCCAGGTCTCGGTCGTAACTCCGCCTGCCGTCACCTCAACCATGCCTTCGCCGTGTGCCTTGTCTCACTTGCCTGTCCTGAACAATCTGAGGCGGTACGCAACCTCTGCTCCAGCACCGGTACCGCTCTTAAACGCCGGCAATGTCAACACAGTCACAACACTTCAATCCACGACACAGTCACAACACTAA
Protein sequence

>MS.gene054196.t1

MAERKRREKLTQNFIALAALVPDLKKVDKYSVLVDTIKYLKELKKRLKFLEEQNEKTKIESPTVLTKPGLCNDDNSSSSRESIDCVVDLPFQVEARILGKYMLIRIQCQEHKGLLVKIMVEVSVVTPPAVTSTMPSPCALSHLPVLNNLRRYATSAPAPVPLLNAGNVNTVTTLQSTTQSQH