AlfalfaGEDB | MS.gene42290

M. sativa cultivar XinJiangDaYe / MS.gene42290

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF13325.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42290.t1	XP_024635479.1	94.8	851	24	2	1	851	1	831	0.00E+00	1508

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42290.t1	Q96EZ8	29.7	172	110	2	689	851	266	435	4.7e-11	71.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42290.t1	G7J4N3	94.6	851	24	3	1	851	1	829	0.0e+00	1499.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049251	MS.gene42290	0.811522	6.71E-51	-1.69E-46
MS.gene050170	MS.gene42290	-0.813768	2.17E-51	-1.69E-46
MS.gene050874	MS.gene42290	0.805611	1.23E-49	-1.69E-46
MS.gene050875	MS.gene42290	0.823836	1.12E-53	-1.69E-46
MS.gene052825	MS.gene42290	-0.802418	5.66E-49	-1.69E-46
MS.gene053097	MS.gene42290	0.807641	4.58E-50	-1.69E-46
MS.gene054633	MS.gene42290	0.824359	8.43E-54	-1.69E-46
MS.gene054662	MS.gene42290	0.823561	1.30E-53	-1.69E-46
MS.gene054851	MS.gene42290	0.810114	1.35E-50	-1.69E-46
MS.gene056040	MS.gene42290	-0.808953	2.40E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42290.t1	MTR_3g113050	94.477	851	25	3	1	851	1	829	0.0	1642
MS.gene42290.t1	MTR_8g076470	31.849	584	302	22	300	851	199	718	1.78e-49	187
MS.gene42290.t1	MTR_8g076470	42.424	132	65	4	1	125	1	128	4.11e-19	93.2
MS.gene42290.t1	MTR_8g076570	43.893	262	124	8	607	851	526	781	8.84e-46	177
MS.gene42290.t1	MTR_8g076470	28.571	511	270	19	300	779	199	645	1.78e-25	112
MS.gene42290.t1	MTR_8g076470	42.424	132	65	4	1	125	1	128	2.31e-19	93.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42290.t1	AT3G54350	35.793	542	260	16	315	851	219	677	3.77e-72	251
MS.gene42290.t1	AT3G54350	40.331	181	80	4	1	181	1	153	2.02e-31	132
MS.gene42290.t1	AT3G54350	35.793	542	260	16	315	851	219	677	3.77e-72	251
MS.gene42290.t1	AT3G54350	40.331	181	80	4	1	181	1	153	2.02e-31	132
MS.gene42290.t1	AT3G54350	35.793	542	260	16	315	851	219	677	3.77e-72	251
MS.gene42290.t1	AT3G54350	40.331	181	80	4	1	181	1	153	2.02e-31	132
MS.gene42290.t1	AT3G54350	35.793	542	260	16	315	851	219	677	3.77e-72	251
MS.gene42290.t1	AT3G54350	40.331	181	80	4	1	181	1	153	2.02e-31	132
MS.gene42290.t1	AT3G54350	35.793	542	260	16	315	851	219	677	3.77e-72	251
MS.gene42290.t1	AT3G54350	40.331	181	80	4	1	181	1	153	2.02e-31	132

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Find 167 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATTCTATTGCTTGCG+AGG	0.580675	3.2:+89845795	MS.gene42290:CDS
AAACAGGTCCTGGAAGGCAA+TGG	0.521092	3.2:-89846515	None:intergenic
AAACTAAGCGGGCTATCATA+AGG	0.490452	3.2:+89847898	MS.gene42290:CDS
AACACAATGTCACAATCTAA+TGG	0.456391	3.2:+89846159	MS.gene42290:CDS
AACAGGTCCTGGAAGGCAAT+GGG	0.491562	3.2:-89846514	None:intergenic
AACCACAAACAGGTCCTGGA+AGG	0.625069	3.2:-89846521	None:intergenic
AACTAGAAAATTGTAGTCCA+TGG	0.490147	3.2:-89845233	None:intergenic
AACTCGGAGCACAAATTTGC+AGG	0.358484	3.2:-89845634	None:intergenic
AACTCTACTTCAGCCATTTC+AGG	0.207699	3.2:-89845982	None:intergenic
AAGAAACCAGCACTCGGAAA+TGG	0.436278	3.2:+89846744	MS.gene42290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACAATGTCACAATCTAA+TGG	+	chr3.2:89846159-89846178	MS.gene42290:CDS	30.0%
AACTAGAAAATTGTAGTCCA+TGG	-	chr3.2:89845236-89845255	None:intergenic	30.0%
AAGCAAAAACATTCACACAA+AGG	-	chr3.2:89847708-89847727	None:intergenic	30.0%
AATTCACTCTTAAACTTCAC+TGG	+	chr3.2:89845841-89845860	MS.gene42290:CDS	30.0%
ACATTATCCTCATGAATTTG+AGG	-	chr3.2:89845493-89845512	None:intergenic	30.0%
AGTGAAGTTTAAGAGTGAAT+TGG	-	chr3.2:89845842-89845861	None:intergenic	30.0%
ATCGAAAATGAAAGAGAGAA+AGG	-	chr3.2:89844371-89844390	None:intergenic	30.0%
ATGTTTCAGAATTAACTAGC+AGG	-	chr3.2:89847649-89847668	None:intergenic	30.0%
CCATCAAAGTTCTTCAAAAT+TGG	+	chr3.2:89845103-89845122	MS.gene42290:CDS	30.0%
GATTGCCTGAAACATAAAAA+CGG	-	chr3.2:89848868-89848887	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	89844274	89849016	89844274	ID=MS.gene42290
chr3.2	mRNA	89844274	89849016	89844274	ID=MS.gene42290.t1;Parent=MS.gene42290
chr3.2	exon	89844274	89844360	89844274	ID=MS.gene42290.t1.exon1;Parent=MS.gene42290.t1
chr3.2	CDS	89844274	89844360	89844274	ID=cds.MS.gene42290.t1;Parent=MS.gene42290.t1
chr3.2	exon	89844938	89846980	89844938	ID=MS.gene42290.t1.exon2;Parent=MS.gene42290.t1
chr3.2	CDS	89844938	89846980	89844938	ID=cds.MS.gene42290.t1;Parent=MS.gene42290.t1
chr3.2	exon	89847077	89847131	89847077	ID=MS.gene42290.t1.exon3;Parent=MS.gene42290.t1
chr3.2	CDS	89847077	89847131	89847077	ID=cds.MS.gene42290.t1;Parent=MS.gene42290.t1
chr3.2	exon	89847877	89848025	89847877	ID=MS.gene42290.t1.exon4;Parent=MS.gene42290.t1
chr3.2	CDS	89847877	89848025	89847877	ID=cds.MS.gene42290.t1;Parent=MS.gene42290.t1
chr3.2	exon	89848522	89848608	89848522	ID=MS.gene42290.t1.exon5;Parent=MS.gene42290.t1
chr3.2	CDS	89848522	89848608	89848522	ID=cds.MS.gene42290.t1;Parent=MS.gene42290.t1
chr3.2	exon	89848882	89849016	89848882	ID=MS.gene42290.t1.exon6;Parent=MS.gene42290.t1
chr3.2	CDS	89848882	89849016	89848882	ID=cds.MS.gene42290.t1;Parent=MS.gene42290.t1

Gene Sequence

>MS.gene42290

ATGGGTGCTCTTGCTACATTATCTTCTTCTTCTTCTCCTTGGACTTCCGAGGATGATCTTTTGCTCAAGACCAACGTTGAGGTTGAGGTTTATCCCTTTCTCTCTTTCATTTTCGATTTCTTGTTTTCTTCTTTATGCCTTTTCAATTTCATTCATTTCATTTTACTTTATCCTCAACTAATTTACTCATTCATTTATAACAATACTCAACATTGCTCTAACATTGTTTTTCTAGGTTTTTATTTCTGTTTCAATTTCATTCTTCAACTTTTGTATGTTTTTTAAATTGAAATTTAATTCCATTTCATTTTTTAATACTATCGTCGATCGCGGTTAACTTATTACGATCACATTCATGTTATTGTACTGACAAACATTGATGAAATTTAATTCAATTTTATTTTTTAATACTGTCGTCGTCGATCGGTTAACTTATTACTATCACATTTCATGTATTTTTTAACACATTGTAGTCTAAGGTTGCTTTTCTTGGTTTTTATGTGTGTTTCAATTTGGTTGTGGAATGTCCGGACAAACAACACGAACTCTAAATCGAATTCAATAGATCTATGTGCATTTTTCTAGTGTTAGATTGATTCTAGAGACAAGACAACCATTTCAGGATTCTGGTTTAAATTAATCTTTTCAAGCTTTATATTTGCAGAATGGAGCTTCCTTGGAAGCAATTGCAAAAGGCGCAGTGCAGTTTTCTCGAAAATATAGTTTTGAGGAAATACAAGAAAGATGGCACAAGCTACTCTATGACCCTATCGTATCTAAGGACGCCTCTTCCTCTATAACAGGTTTCGAGCATTCTGTTTCGCCTCTCCCATCAAAGTTCTTCAAAATTGGACATTTGAAAGATGAACAGAAAGATGTTTCTGTTAAGAGAAAAGTTAACACTGTTCGAAATTCTTATTACGCTATGCGTAAAAGAATCCGTAGAGATATGCAAACTTCCATGGACTACAATTTTCTAGTTGATTCAGAAAATGATAATTATGTGGTAAATGGAAATGAGCCTTTGCCTGAAAACTGTGCACTCGAGGGTTCAACTTCAAATGACTTTTCAAATCATGATCCGTCACACTATGGTCTTCCAGAAAATTTTATGGATGTTGATATTGGAGTTGCTGCTCAAACGTTTTACACTGGAGTTGATGATACACTTGAAGAGAATTTTCCCATGGACCAAAACAATATACCTGAGGAGGAACCTCAAATTCATGAGGATAATGTGCTTCTGAATGGAACTGCCGAGGAATTCGGCGATTCAATAGTACTAGATATAGAAAAATTTATTGGAGATGATGAACTAGATGATATGTCTTTTTCTGCATTTCACCAAATCAACAATGACCCTGCAAATTTGTGCTCCGAGTTTGATGAAGATTATATGTTTGATTCACCTGAGTTAGAGTGTGGGAATTCATTTGACGATTTAGAGTTATCACTTCCTGACATTCAGGACATGCCGGTCTGGAGAACAGAAGAACAGGATAATATTCCATGTGATGGTTCAAAAGATTCTATTGCTTGCGAGGATGGTTATCTGGAAGAACTGTCCAATTCACTCTTAAACTTCACTGGTGAGGAAGAGCTATTTCTGATGGATTCTGTTGGAAAAGATGGGATTGGTAAATCTTATTATGACGGTCTGAGTTCGCTTTTACTAAACTCTCCAATTGATGGTTGTTCAGATCAGATACCTGAAATGGCTGAAGTAGAGTTATTATCGACCCCACGCGAAGATGTTAAAAATCCGTCTGTTTCATGTCGCACAGAAGTAGACGACAATGCAGGAGAGACTGAAACAGAGCTGTTAGCGGCCTTTGATGCACATGTTAAAGGTATGTCAGTTTCATGTCGTGCAGAAGTAGATGACAACACAATGTCACAATCTAATGGCGTGGAAGTAGTTCAAAAACCAGAGTTCCAAATGGCAGCTTCCGCTTCAGCTAAAGACCCTCAATTTCCTGAACTAATTAACGGAGTTGTTCTCTGTGTAATAAATACTGAAGACCCGGAAGTTCCATCCAATGATGATGTTTTCCTACCCTTTAATGAGCCTCCCCCAACAATTTCCTGTTCATCCGAATCAGCTGCTAAAAAACCCAATATACCAGTTCCATCATCTGGTAATGATTATGGAGATAGAGCTAGCAGGAGAGGTAAAGTTTTGATGCAGGTTGAACAAAAAAGCTCCGTAGGAGCTCAGGTTTCTTCTCAGACAACGGGAGCCCATTGCCTTCCAGGACCTGTTTGTGGTTCTAAAATAAAATATGAGTTGTCTAATAATCATGCATCACACACACTGTCTAGAAATGCAATTATTGCTTCCAGTGACCTAGGTGGAAACAATGATGCAACAAACAAAACTCATGCTGCTCTACATGCAAGTCCTAAGGAAAAACCTGTCGATGTTAGCTTCGTAAAGCATCAAAGCAATAATGTGACAAATTTGTCACATAAGAAACCAGCACTCGGAAATGGCCTCAGAAATCATGGCCAACCTAATGGTTCTAGCCTGAAACAGGAACGGGATGTAGCATTGCCACTTGAAAATAATCAGTTGCAACATGCTGAAGTGGGGTCCGCAGATGTTCTGGGGTCTGAGATGGTGGTTTACAGTGAAAGGTTAGACGAGGAAGAGCAATATATCGAAAGTGATGACGAAGTTCCTTATTATTCTGATGTAGAGGCCATGGTAAGGCATGCTGTGTTGATCTTTCAGTCAACAGTTGACTTTAGCTTTTGCACATCCTTTGCAATTTTCTGACTTATTCATGATTCCTTCCTACAGGTACTTGATATGGACTTGGAACCTGATGATCATGATTTATATGATAATGAAGAAGGTATTACTATTATGTGGCCAGGAATTTTAGTGGTGGTTGACTAGTTTGTGCTACTTGTTAATTGCTATATTTTTTTTTTCTCTCTTTTTTTTTTTCTATTGAAAAGAGAGACAACTAATATGAATTAGTTACCTAACTGAAGATCATTTCTATTTCTTGATGCATTTTTATGCTACCTCATGGTATTGGAGCACACTTCACCTATTTGAGCAGTTGGTAGTCTCTTAAGGCTCAATTCTCTTCCTTATTTTGCTAAAAAATTTGGACGTATACACAATTGATGAATAAATATAAACGTACTATAAGGAGGGGGGGTTACGAATTTTTGAATTCCAAGAGGTTGCACTACTTTAATACTCTTTCAGTTGGTTTTAGTTCATCTGTAAATTTAGAAGCTTTATTGTTGTACAACATGCTATGTTGTTGTCATGGCTAGATTCAACTTTTGGATTTGTGGTGGCCTTTGACTTGTGCTTTTGGGACCAGAATCTGTTTTATCATATTTTCTTTGTTACCTGCTAGTTAATTCTGAAACATGAAATATGTAAATATTTATGTGCACAGTCTGTAATACCTTTGTGTGAATGTTTTTGCTTTGATCAACATGTCTTTGTCAAAAAAAGAAAAAATTACACATGTCTTTATCAGAACTTGACCAACATAATTTAGTTTCTTTTGTGATTCGGAAAGTGATTTTTTATTACATTATTATAGCTTAACAATATATATTATGTTTACAATTTAGTATCAAGATATCAACACGAAGAAACTAAGCGGGCTATCATAAGGCTGGAGCAGGGCGCTCATTCTTATATGCAGAGAGCTATGGCTTCACATGGAGCATTGGCCCTATTATATGGTCGCCACTCAAAGTACTATATCAAGAAAACTGAGGTATTTGTCACTGAAGCATGTAAATTACTTCCTTGATCTTCACGTTGTTGGGAGATGTTTTCCGATTTTTACTTTTTGAATATTTGAAGTATTACAACCTCACGTTATTTTTTGTGATAATTTCATTATTGCAAAAAAAAAATCTCACATGCATTACAAAAGAAATTTCACATGCACTATGTAGATTATTAGTACACATATATGGTTGTTTTATTCAGATTATGTTTCTAACATGAGGCAGTGACCTTTTTGTATATTTTGGACTGATTTGTGATGAAAACCAATGTAGTTGAAAATACCTGTTTTGCAATTATAAATATAAGTGTTCTTTGAAAAAGTGCCCGAACTAAAATGCACATTTTGTTTGTTTTTGTTTTAAATTTTGAAAGGGTGTATATTTTCTGCGACGTGTTAATAGAATCTAATTGAAGCTGATATTGCAAATCAAATCTAACTAGTGGGCCATGCTTTTATGATGGTTCAAATCATCCTGCAGGTTTTAGTTGGACGATCAACAGAAGGTTTTCATGTAGATATTGACTTAGGCAAAGGAGGTTGTGCCAATCTCATATCTAGACGTCAGGTTGGTTATATTTAGTTATTTACCAACTCTGACTTAATGCAGTTTTTTTTTTTTTTGGTGTGTGTGTATATCTACTCATTTAAAATCTGGACTATGCTGTGTATGCATCAGAAAATTAGTTTATAGTTACACTGTGGTGATGAACTAATCACATCAATATGCTTTAAGAAATTACTTCAATGGTAAATAGTTGGGATGCAGAGGTATTGTCTTCACCACCAAATATAAATTGACCTCAATATGCCAATTAAACTTTCCGTTTTTATGTTTCAGGCAATCATAAAAATGGATAAAGATGGATCATTCTACATTAAAAACATTGGCAGGAGTTCAATGCTGATAAATAGCACAGAATTGCACACTGGTCAATCTCAAAGACTGCTTTCCAATTATCTGATTGAGGTATAA

Protein sequence

>MS.gene42290.t1

MGALATLSSSSSPWTSEDDLLLKTNVEVENGASLEAIAKGAVQFSRKYSFEEIQERWHKLLYDPIVSKDASSSITGFEHSVSPLPSKFFKIGHLKDEQKDVSVKRKVNTVRNSYYAMRKRIRRDMQTSMDYNFLVDSENDNYVVNGNEPLPENCALEGSTSNDFSNHDPSHYGLPENFMDVDIGVAAQTFYTGVDDTLEENFPMDQNNIPEEEPQIHEDNVLLNGTAEEFGDSIVLDIEKFIGDDELDDMSFSAFHQINNDPANLCSEFDEDYMFDSPELECGNSFDDLELSLPDIQDMPVWRTEEQDNIPCDGSKDSIACEDGYLEELSNSLLNFTGEEELFLMDSVGKDGIGKSYYDGLSSLLLNSPIDGCSDQIPEMAEVELLSTPREDVKNPSVSCRTEVDDNAGETETELLAAFDAHVKGMSVSCRAEVDDNTMSQSNGVEVVQKPEFQMAASASAKDPQFPELINGVVLCVINTEDPEVPSNDDVFLPFNEPPPTISCSSESAAKKPNIPVPSSGNDYGDRASRRGKVLMQVEQKSSVGAQVSSQTTGAHCLPGPVCGSKIKYELSNNHASHTLSRNAIIASSDLGGNNDATNKTHAALHASPKEKPVDVSFVKHQSNNVTNLSHKKPALGNGLRNHGQPNGSSLKQERDVALPLENNQLQHAEVGSADVLGSEMVVYSERLDEEEQYIESDDEVPYYSDVEAMVLDMDLEPDDHDLYDNEEVSRYQHEETKRAIIRLEQGAHSYMQRAMASHGALALLYGRHSKYYIKKTEVLVGRSTEGFHVDIDLGKGGCANLISRRQAIIKMDKDGSFYIKNIGRSSMLINSTELHTGQSQRLLSNYLIEV