Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42728.t1 | XP_003628404.1 | 93.8 | 195 | 12 | 0 | 1 | 195 | 1 | 195 | 4.70E-103 | 384 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42728.t1 | P49332 | 70.7 | 198 | 57 | 1 | 3 | 199 | 4 | 201 | 2.2e-77 | 290.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42728.t1 | G7LB15 | 93.8 | 195 | 12 | 0 | 1 | 195 | 1 | 195 | 3.4e-103 | 384.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene42728 | 0.801665 | 8.09E-49 | -1.69E-46 |
| MS.gene049159 | MS.gene42728 | 0.826623 | 2.45E-54 | -1.69E-46 |
| MS.gene050763 | MS.gene42728 | 0.802495 | 5.46E-49 | -1.69E-46 |
| MS.gene050815 | MS.gene42728 | 0.805729 | 1.16E-49 | -1.69E-46 |
| MS.gene051757 | MS.gene42728 | 0.802681 | 5.00E-49 | -1.69E-46 |
| MS.gene052665 | MS.gene42728 | 0.802249 | 6.14E-49 | -1.69E-46 |
| MS.gene052896 | MS.gene42728 | 0.805718 | 1.17E-49 | -1.69E-46 |
| MS.gene053216 | MS.gene42728 | 0.809822 | 1.57E-50 | -1.69E-46 |
| MS.gene054379 | MS.gene42728 | 0.816736 | 4.74E-52 | -1.69E-46 |
| MS.gene054930 | MS.gene42728 | 0.816734 | 4.75E-52 | -1.69E-46 |
| MS.gene05510 | MS.gene42728 | 0.808397 | 3.16E-50 | -1.69E-46 |
| MS.gene059128 | MS.gene42728 | 0.815606 | 8.48E-52 | -1.69E-46 |
| MS.gene059713 | MS.gene42728 | 0.80189 | 7.27E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene42728 | 0.811595 | 6.47E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene42728 | 0.828452 | 8.92E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42728.t1 | MTR_8g056940 | 93.846 | 195 | 12 | 0 | 1 | 195 | 1 | 195 | 2.30e-135 | 379 |
| MS.gene42728.t1 | MTR_0186s0030 | 95.745 | 141 | 6 | 0 | 1 | 141 | 1 | 141 | 3.73e-95 | 274 |
| MS.gene42728.t1 | MTR_2g070150 | 65.829 | 199 | 68 | 0 | 1 | 199 | 1 | 199 | 8.32e-95 | 276 |
| MS.gene42728.t1 | MTR_2g070060 | 60.369 | 217 | 85 | 1 | 1 | 217 | 1 | 216 | 9.39e-94 | 273 |
| MS.gene42728.t1 | MTR_2g070070 | 65.829 | 199 | 68 | 0 | 1 | 199 | 1 | 199 | 1.07e-93 | 273 |
| MS.gene42728.t1 | MTR_2g070180 | 64.824 | 199 | 70 | 0 | 1 | 199 | 1 | 199 | 2.78e-92 | 270 |
| MS.gene42728.t1 | MTR_2g070130 | 61.809 | 199 | 76 | 0 | 1 | 199 | 1 | 199 | 4.78e-89 | 261 |
| MS.gene42728.t1 | MTR_4g124130 | 64.286 | 196 | 69 | 1 | 1 | 195 | 1 | 196 | 1.68e-88 | 260 |
| MS.gene42728.t1 | MTR_2g070200 | 60.190 | 211 | 83 | 1 | 1 | 210 | 1 | 211 | 3.28e-88 | 259 |
| MS.gene42728.t1 | MTR_2g070140 | 65.574 | 183 | 63 | 0 | 17 | 199 | 1 | 183 | 2.90e-86 | 254 |
| MS.gene42728.t1 | MTR_2g070110 | 58.525 | 217 | 88 | 2 | 1 | 217 | 1 | 215 | 1.18e-84 | 250 |
| MS.gene42728.t1 | MTR_3g467420 | 56.923 | 195 | 84 | 0 | 5 | 199 | 10 | 204 | 9.41e-84 | 248 |
| MS.gene42728.t1 | MTR_3g467430 | 56.345 | 197 | 86 | 0 | 3 | 199 | 8 | 204 | 4.20e-83 | 247 |
| MS.gene42728.t1 | MTR_2g070210 | 60.199 | 201 | 78 | 1 | 1 | 199 | 1 | 201 | 4.58e-83 | 246 |
| MS.gene42728.t1 | MTR_2g070120 | 58.974 | 195 | 80 | 0 | 1 | 195 | 1 | 195 | 2.59e-80 | 239 |
| MS.gene42728.t1 | MTR_5g076900 | 51.795 | 195 | 92 | 2 | 2 | 195 | 4 | 197 | 1.84e-65 | 202 |
| MS.gene42728.t1 | MTR_4g019780 | 42.021 | 188 | 104 | 4 | 3 | 187 | 7 | 192 | 1.79e-43 | 145 |
| MS.gene42728.t1 | MTR_7g065750 | 44.444 | 189 | 99 | 4 | 3 | 187 | 6 | 192 | 1.82e-43 | 146 |
| MS.gene42728.t1 | MTR_7g065630 | 46.237 | 186 | 95 | 5 | 3 | 187 | 24 | 205 | 2.04e-43 | 146 |
| MS.gene42728.t1 | MTR_7g065720 | 43.386 | 189 | 101 | 4 | 3 | 187 | 6 | 192 | 3.35e-43 | 145 |
| MS.gene42728.t1 | MTR_7g065740 | 44.974 | 189 | 98 | 4 | 3 | 187 | 6 | 192 | 1.42e-42 | 144 |
| MS.gene42728.t1 | MTR_5g040430 | 35.909 | 220 | 134 | 2 | 2 | 214 | 5 | 224 | 1.77e-42 | 143 |
| MS.gene42728.t1 | MTR_7g065660 | 43.085 | 188 | 102 | 4 | 3 | 187 | 6 | 191 | 3.41e-42 | 142 |
| MS.gene42728.t1 | MTR_3g099757 | 47.059 | 170 | 88 | 2 | 1 | 169 | 1 | 169 | 5.41e-42 | 142 |
| MS.gene42728.t1 | MTR_4g059730 | 41.379 | 203 | 114 | 3 | 1 | 199 | 1 | 202 | 8.90e-42 | 141 |
| MS.gene42728.t1 | MTR_5g037380 | 43.523 | 193 | 100 | 4 | 4 | 187 | 5 | 197 | 4.81e-41 | 140 |
| MS.gene42728.t1 | MTR_8g087425 | 39.247 | 186 | 110 | 2 | 2 | 185 | 3 | 187 | 1.93e-40 | 138 |
| MS.gene42728.t1 | MTR_1g090060 | 42.391 | 184 | 101 | 3 | 11 | 190 | 10 | 192 | 1.96e-40 | 138 |
| MS.gene42728.t1 | MTR_4g019790 | 40.201 | 199 | 114 | 4 | 4 | 199 | 7 | 203 | 2.95e-40 | 137 |
| MS.gene42728.t1 | MTR_8g087410 | 39.459 | 185 | 109 | 2 | 3 | 185 | 5 | 188 | 1.12e-38 | 134 |
| MS.gene42728.t1 | MTR_7g065710 | 47.170 | 159 | 81 | 3 | 1 | 158 | 1 | 157 | 1.98e-38 | 133 |
| MS.gene42728.t1 | MTR_7g065270 | 39.713 | 209 | 112 | 6 | 13 | 216 | 16 | 215 | 2.10e-38 | 133 |
| MS.gene42728.t1 | MTR_7g065265 | 43.575 | 179 | 94 | 5 | 13 | 187 | 16 | 191 | 4.51e-38 | 132 |
| MS.gene42728.t1 | MTR_1g090100 | 43.478 | 184 | 99 | 3 | 11 | 190 | 9 | 191 | 3.73e-37 | 129 |
| MS.gene42728.t1 | MTR_1g090070 | 41.327 | 196 | 101 | 5 | 4 | 190 | 9 | 199 | 5.41e-37 | 129 |
| MS.gene42728.t1 | MTR_7g065680 | 47.771 | 157 | 79 | 3 | 3 | 158 | 6 | 160 | 7.26e-37 | 129 |
| MS.gene42728.t1 | MTR_7g065590 | 39.267 | 191 | 109 | 5 | 13 | 199 | 16 | 203 | 8.03e-37 | 129 |
| MS.gene42728.t1 | MTR_1g090150 | 44.304 | 158 | 82 | 4 | 3 | 157 | 2 | 156 | 3.34e-36 | 127 |
| MS.gene42728.t1 | MTR_1g115195 | 39.500 | 200 | 111 | 4 | 7 | 199 | 6 | 202 | 4.32e-36 | 127 |
| MS.gene42728.t1 | MTR_7g065290 | 41.573 | 178 | 99 | 4 | 13 | 187 | 16 | 191 | 7.25e-36 | 126 |
| MS.gene42728.t1 | MTR_6g080440 | 45.806 | 155 | 79 | 3 | 18 | 170 | 17 | 168 | 1.76e-35 | 125 |
| MS.gene42728.t1 | MTR_7g065230 | 40.782 | 179 | 96 | 5 | 13 | 188 | 16 | 187 | 3.78e-35 | 124 |
| MS.gene42728.t1 | MTR_8g061950 | 39.791 | 191 | 106 | 5 | 7 | 188 | 8 | 198 | 5.18e-35 | 124 |
| MS.gene42728.t1 | MTR_7g065600 | 40.741 | 189 | 105 | 5 | 3 | 187 | 6 | 191 | 9.10e-35 | 123 |
| MS.gene42728.t1 | MTR_1g090090 | 46.711 | 152 | 78 | 3 | 11 | 160 | 10 | 160 | 3.20e-34 | 122 |
| MS.gene42728.t1 | MTR_7g065640 | 45.652 | 138 | 73 | 2 | 3 | 139 | 6 | 142 | 3.21e-34 | 121 |
| MS.gene42728.t1 | MTR_7g065700 | 47.134 | 157 | 80 | 3 | 1 | 156 | 4 | 158 | 5.91e-34 | 121 |
| MS.gene42728.t1 | MTR_7g065260 | 37.766 | 188 | 112 | 4 | 3 | 187 | 13 | 198 | 2.31e-32 | 117 |
| MS.gene42728.t1 | MTR_2g072120 | 66.176 | 68 | 23 | 0 | 47 | 114 | 1 | 68 | 3.31e-28 | 102 |
| MS.gene42728.t1 | MTR_4g043640 | 70.968 | 62 | 12 | 2 | 131 | 190 | 29 | 86 | 2.78e-23 | 89.7 |
| MS.gene42728.t1 | MTR_5g037390 | 45.205 | 73 | 38 | 2 | 28 | 98 | 11 | 83 | 2.73e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42728.t1 | AT1G17170 | 66.154 | 195 | 65 | 1 | 1 | 195 | 1 | 194 | 3.92e-92 | 270 |
| MS.gene42728.t1 | AT1G78380 | 64.824 | 199 | 70 | 0 | 1 | 199 | 1 | 199 | 8.35e-92 | 269 |
| MS.gene42728.t1 | AT1G17180 | 64.322 | 199 | 71 | 0 | 1 | 199 | 1 | 199 | 1.01e-91 | 268 |
| MS.gene42728.t1 | AT1G78340 | 63.819 | 199 | 72 | 0 | 1 | 199 | 1 | 199 | 1.75e-91 | 268 |
| MS.gene42728.t1 | AT1G78370 | 61.809 | 199 | 76 | 0 | 1 | 199 | 1 | 199 | 4.54e-91 | 267 |
| MS.gene42728.t1 | AT1G78320 | 63.590 | 195 | 71 | 0 | 1 | 195 | 1 | 195 | 1.48e-86 | 255 |
| MS.gene42728.t1 | AT1G78360 | 63.265 | 196 | 71 | 1 | 1 | 195 | 1 | 196 | 4.50e-86 | 254 |
| MS.gene42728.t1 | AT1G17190 | 57.360 | 197 | 84 | 0 | 3 | 199 | 4 | 200 | 1.87e-80 | 240 |
| MS.gene42728.t1 | AT1G53680 | 55.330 | 197 | 86 | 2 | 5 | 199 | 8 | 204 | 1.20e-77 | 233 |
| MS.gene42728.t1 | AT3G43800 | 54.229 | 201 | 88 | 3 | 3 | 199 | 4 | 204 | 6.37e-69 | 211 |
| MS.gene42728.t1 | AT1G78320 | 53.846 | 195 | 63 | 1 | 1 | 195 | 1 | 168 | 2.00e-65 | 201 |
| MS.gene42728.t1 | AT3G09270 | 46.809 | 188 | 97 | 2 | 3 | 187 | 5 | 192 | 3.95e-46 | 152 |
| MS.gene42728.t1 | AT2G29420 | 44.382 | 178 | 90 | 4 | 2 | 175 | 7 | 179 | 8.04e-45 | 149 |
| MS.gene42728.t1 | AT1G10360 | 41.538 | 195 | 106 | 4 | 2 | 188 | 3 | 197 | 3.94e-42 | 142 |
| MS.gene42728.t1 | AT2G29440 | 48.485 | 165 | 73 | 4 | 3 | 160 | 5 | 164 | 1.68e-41 | 140 |
| MS.gene42728.t1 | AT1G10370 | 39.706 | 204 | 115 | 4 | 2 | 197 | 3 | 206 | 2.36e-41 | 140 |
| MS.gene42728.t1 | AT2G29460 | 45.963 | 161 | 83 | 2 | 3 | 160 | 6 | 165 | 5.61e-41 | 139 |
| MS.gene42728.t1 | AT1G74590 | 47.826 | 138 | 65 | 2 | 4 | 134 | 7 | 144 | 5.62e-41 | 140 |
| MS.gene42728.t1 | AT2G29490 | 45.342 | 161 | 84 | 2 | 3 | 160 | 6 | 165 | 7.26e-41 | 139 |
| MS.gene42728.t1 | AT2G29480 | 44.099 | 161 | 86 | 2 | 3 | 160 | 6 | 165 | 2.08e-40 | 138 |
| MS.gene42728.t1 | AT2G29450 | 48.466 | 163 | 77 | 4 | 3 | 160 | 5 | 165 | 2.30e-40 | 138 |
| MS.gene42728.t1 | AT1G59700 | 42.365 | 203 | 106 | 6 | 3 | 195 | 5 | 206 | 3.28e-39 | 135 |
| MS.gene42728.t1 | AT2G29470 | 37.850 | 214 | 126 | 5 | 7 | 215 | 10 | 221 | 5.01e-38 | 132 |
| MS.gene42728.t1 | AT1G27140 | 41.451 | 193 | 103 | 4 | 15 | 197 | 17 | 209 | 7.29e-38 | 132 |
| MS.gene42728.t1 | AT1G27130 | 38.119 | 202 | 116 | 4 | 7 | 199 | 9 | 210 | 9.44e-38 | 131 |
| MS.gene42728.t1 | AT1G59670 | 41.584 | 202 | 109 | 5 | 3 | 195 | 5 | 206 | 1.91e-37 | 130 |
| MS.gene42728.t1 | AT5G62480 | 36.872 | 179 | 105 | 1 | 5 | 175 | 9 | 187 | 7.94e-37 | 129 |
| MS.gene42728.t1 | AT1G69920 | 37.624 | 202 | 113 | 5 | 7 | 197 | 37 | 236 | 6.05e-36 | 127 |
| MS.gene42728.t1 | AT1G69930 | 36.139 | 202 | 122 | 3 | 3 | 197 | 11 | 212 | 2.20e-33 | 120 |
| MS.gene42728.t1 | AT5G62480 | 29.050 | 179 | 92 | 2 | 5 | 175 | 9 | 160 | 1.42e-20 | 86.3 |
| MS.gene42728.t1 | AT5G62480 | 29.050 | 179 | 93 | 2 | 5 | 175 | 9 | 161 | 2.06e-20 | 85.9 |
Find 48 sgRNAs with CRISPR-Local
Find 68 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAAGCTCAAGCAAGATTT+TGG | 0.147771 | 8.2:+54550561 | MS.gene42728:CDS |
| AGGATAGCATTGGCTGAAAA+AGG | 0.234872 | 8.2:+54550347 | MS.gene42728:CDS |
| CTTGGAGACCAACCTTATTT+TGG | 0.247910 | 8.2:+54551002 | MS.gene42728:CDS |
| ATAATGATGGATTCACAAAT+TGG | 0.249398 | 8.2:-54550476 | None:intergenic |
| GGAGTTGATTGAAGGCTTAA+AGG | 0.261757 | 8.2:+54550965 | MS.gene42728:CDS |
| ACTGGAATCTTCTTGTGAAT+TGG | 0.280000 | 8.2:-54550434 | None:intergenic |
| TTTCTCATCAGCAACAGATT+TGG | 0.313491 | 8.2:-54551176 | None:intergenic |
| GATTCATTTGCAAAAGCATT+TGG | 0.343663 | 8.2:-54550412 | None:intergenic |
| GTGATGTTGGAGGAAGGATA+TGG | 0.346197 | 8.2:+54550907 | MS.gene42728:CDS |
| CTTGCTTGAGCTTTCTGATA+AGG | 0.352610 | 8.2:-54550554 | None:intergenic |
| CACAAATTGGATTTCCCTCA+TGG | 0.406218 | 8.2:-54550463 | None:intergenic |
| TGATGAGGTTTGGAAGGATA+AGG | 0.411738 | 8.2:+54550511 | MS.gene42728:CDS |
| GATGAATGGCTTAGTATGTT+TGG | 0.412400 | 8.2:+54550314 | MS.gene42728:CDS |
| AAAGAGAGATGAGGTTGAAT+TGG | 0.422263 | 8.2:+54550935 | MS.gene42728:CDS |
| AATGTGTTACCACCAAAATA+AGG | 0.428285 | 8.2:-54551014 | None:intergenic |
| TTGAGTATATTGATGAGGTT+TGG | 0.428745 | 8.2:+54550501 | MS.gene42728:CDS |
| TTTCCCTCATGGATAAGAAC+TGG | 0.442706 | 8.2:-54550452 | None:intergenic |
| TAAGGATCTGAGGGTAGAAA+TGG | 0.447162 | 8.2:-54550536 | None:intergenic |
| ATGAGTTTGTTGTTAACTAT+AGG | 0.457851 | 8.2:+54551206 | MS.gene42728:CDS |
| TGAGGTTGAATTGGCAAAGA+AGG | 0.460493 | 8.2:+54550944 | MS.gene42728:CDS |
| TATAAAACCAACTATGAAAA+GGG | 0.461833 | 8.2:-54551061 | None:intergenic |
| GTATAAAACCAACTATGAAA+AGG | 0.463905 | 8.2:-54551062 | None:intergenic |
| AGTTGATATTACTTGATGAA+TGG | 0.465432 | 8.2:+54550300 | MS.gene42728:CDS |
| CTATAGGAAGAGGTTTGAGT+TGG | 0.471565 | 8.2:+54551222 | MS.gene42728:CDS |
| AAAATGCAGGTTGGTGATGT+TGG | 0.476506 | 8.2:+54550894 | MS.gene42728:intron |
| GCAAAGAAGGAGTTGATTGA+AGG | 0.480756 | 8.2:+54550957 | MS.gene42728:CDS |
| AATATACTCAACAATAATGA+TGG | 0.483925 | 8.2:-54550489 | None:intergenic |
| TGATGTTGGAGGAAGGATAT+GGG | 0.485671 | 8.2:+54550908 | MS.gene42728:CDS |
| AAGGAATTAGAGAATGTGCT+TGG | 0.497037 | 8.2:+54550984 | MS.gene42728:CDS |
| AGGGATAAAGTATGAGTACA+AGG | 0.524364 | 8.2:+54550367 | MS.gene42728:CDS |
| GTGTGATAAGTTGATTGCTT+GGG | 0.528271 | 8.2:+54551121 | MS.gene42728:CDS |
| TTGTTGTTAACTATAGGAAG+AGG | 0.543349 | 8.2:+54551212 | MS.gene42728:CDS |
| ATTATGCAACTTCAAAGTTG+AGG | 0.546513 | 8.2:+54551094 | MS.gene42728:CDS |
| GTATATTGATGAGGTTTGGA+AGG | 0.548215 | 8.2:+54550505 | MS.gene42728:CDS |
| GTTGGAGGAAGGATATGGGC+TGG | 0.551186 | 8.2:+54550912 | MS.gene42728:CDS |
| GTATGTTTGGTATGAGAGCA+AGG | 0.566057 | 8.2:+54550327 | MS.gene42728:CDS |
| AGTGTGATAAGTTGATTGCT+TGG | 0.574483 | 8.2:+54551120 | MS.gene42728:CDS |
| AGCTTTCTGATAAGGATCTG+AGG | 0.577878 | 8.2:-54550546 | None:intergenic |
| GCTTTCTGATAAGGATCTGA+GGG | 0.581759 | 8.2:-54550545 | None:intergenic |
| TGTTACCACCAAAATAAGGT+TGG | 0.599332 | 8.2:-54551010 | None:intergenic |
| TATTGTTGAGTATATTGATG+AGG | 0.599628 | 8.2:+54550496 | MS.gene42728:CDS |
| ATGCAGGTTGGTGATGTTGG+AGG | 0.604533 | 8.2:+54550897 | MS.gene42728:intron |
| GTTGTCTTTGACAATGGCAG+AGG | 0.605201 | 8.2:+54550277 | None:intergenic |
| TATGAGAGCAAGGATAGCAT+TGG | 0.605598 | 8.2:+54550337 | MS.gene42728:CDS |
| ATTCCAGTTCTTATCCATGA+GGG | 0.615154 | 8.2:+54550449 | MS.gene42728:CDS |
| GATTCCAGTTCTTATCCATG+AGG | 0.647058 | 8.2:+54550448 | MS.gene42728:CDS |
| AGGTTGGTGATGTTGGAGGA+AGG | 0.655636 | 8.2:+54550901 | MS.gene42728:intron |
| ATGGGCTGGAAAGAGAGATG+AGG | 0.657405 | 8.2:+54550926 | MS.gene42728:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATATTTTTATTTATTTAC+TGG | - | chr8.2:54550659-54550678 | None:intergenic | 10.0% |
| !!! | ATTTTTATTTATTTACTGGT+AGG | - | chr8.2:54550655-54550674 | None:intergenic | 15.0% |
| !! | AATATACTCAACAATAATGA+TGG | - | chr8.2:54550492-54550511 | None:intergenic | 20.0% |
| !! | ATGTGTTAAAAAAAAAATGC+AGG | + | chr8.2:54550881-54550900 | MS.gene42728:intron | 20.0% |
| !! | ATGTTAATTAAGTCATTGAA+TGG | - | chr8.2:54550625-54550644 | None:intergenic | 20.0% |
| !! | TATAAAACCAACTATGAAAA+GGG | - | chr8.2:54551064-54551083 | None:intergenic | 20.0% |
| !! | TATCCATATTAATAATGACT+AGG | + | chr8.2:54550813-54550832 | MS.gene42728:intron | 20.0% |
| !! | TGTTAATTAAGTCATTGAAT+GGG | - | chr8.2:54550624-54550643 | None:intergenic | 20.0% |
| ! | CAACCTAGTCATTATTAATA+TGG | - | chr8.2:54550819-54550838 | None:intergenic | 25.0% |
| ! | CATTCTACATATTTCATCAA+AGG | + | chr8.2:54550765-54550784 | MS.gene42728:intron | 25.0% |
| ! | GTATAAAACCAACTATGAAA+AGG | - | chr8.2:54551065-54551084 | None:intergenic | 25.0% |
| ! | GTTAAAAAAAAAATGCAGGT+TGG | + | chr8.2:54550885-54550904 | MS.gene42728:intron | 25.0% |
| ! | TATTGTTGAGTATATTGATG+AGG | + | chr8.2:54550496-54550515 | MS.gene42728:CDS | 25.0% |
| !! | AGTTGATATTACTTGATGAA+TGG | + | chr8.2:54550300-54550319 | MS.gene42728:CDS | 25.0% |
| !!! | ATAATGATGGATTCACAAAT+TGG | - | chr8.2:54550479-54550498 | None:intergenic | 25.0% |
| !!! | ATGAGTTTGTTGTTAACTAT+AGG | + | chr8.2:54551206-54551225 | MS.gene42728:CDS | 25.0% |
| AATGTGTTACCACCAAAATA+AGG | - | chr8.2:54551017-54551036 | None:intergenic | 30.0% | |
| ATTATGCAACTTCAAAGTTG+AGG | + | chr8.2:54551094-54551113 | MS.gene42728:CDS | 30.0% | |
| CTACATATTTCATCAAAGGA+TGG | + | chr8.2:54550769-54550788 | MS.gene42728:intron | 30.0% | |
| TTGAGTATATTGATGAGGTT+TGG | + | chr8.2:54550501-54550520 | MS.gene42728:CDS | 30.0% | |
| ! | TTGTTGTTAACTATAGGAAG+AGG | + | chr8.2:54551212-54551231 | MS.gene42728:CDS | 30.0% |
| !! | ATTTTGGTGGTAACACATTT+GGG | + | chr8.2:54551018-54551037 | MS.gene42728:CDS | 30.0% |
| !! | GATTCATTTGCAAAAGCATT+TGG | - | chr8.2:54550415-54550434 | None:intergenic | 30.0% |
| !!! | TATTTTGGTGGTAACACATT+TGG | + | chr8.2:54551017-54551036 | MS.gene42728:CDS | 30.0% |
| AAAGAGAGATGAGGTTGAAT+TGG | + | chr8.2:54550935-54550954 | MS.gene42728:CDS | 35.0% | |
| AAGGAATTAGAGAATGTGCT+TGG | + | chr8.2:54550984-54551003 | MS.gene42728:CDS | 35.0% | |
| ACTGGAATCTTCTTGTGAAT+TGG | - | chr8.2:54550437-54550456 | None:intergenic | 35.0% | |
| AGGGATAAAGTATGAGTACA+AGG | + | chr8.2:54550367-54550386 | MS.gene42728:CDS | 35.0% | |
| ATTCCAGTTCTTATCCATGA+GGG | + | chr8.2:54550449-54550468 | MS.gene42728:CDS | 35.0% | |
| GATGAATGGCTTAGTATGTT+TGG | + | chr8.2:54550314-54550333 | MS.gene42728:CDS | 35.0% | |
| GTATATTGATGAGGTTTGGA+AGG | + | chr8.2:54550505-54550524 | MS.gene42728:CDS | 35.0% | |
| TGTTACCACCAAAATAAGGT+TGG | - | chr8.2:54551013-54551032 | None:intergenic | 35.0% | |
| TTTCTCATCAGCAACAGATT+TGG | - | chr8.2:54551179-54551198 | None:intergenic | 35.0% | |
| ! | AGAAAGCTCAAGCAAGATTT+TGG | + | chr8.2:54550561-54550580 | MS.gene42728:CDS | 35.0% |
| ! | CTTTGATCCCTTTTCATAGT+TGG | + | chr8.2:54551054-54551073 | MS.gene42728:CDS | 35.0% |
| ! | GAAAGCTCAAGCAAGATTTT+GGG | + | chr8.2:54550562-54550581 | MS.gene42728:CDS | 35.0% |
| !! | AGTGTGATAAGTTGATTGCT+TGG | + | chr8.2:54551120-54551139 | MS.gene42728:CDS | 35.0% |
| !! | GGCTGATTTTGTCAACAAAA+AGG | + | chr8.2:54550583-54550602 | MS.gene42728:CDS | 35.0% |
| !! | GTGTGATAAGTTGATTGCTT+GGG | + | chr8.2:54551121-54551140 | MS.gene42728:CDS | 35.0% |
| AGCTTTCTGATAAGGATCTG+AGG | - | chr8.2:54550549-54550568 | None:intergenic | 40.0% | |
| ATACTCACATCTCACTAGGA+AGG | - | chr8.2:54550739-54550758 | None:intergenic | 40.0% | |
| CACAAATTGGATTTCCCTCA+TGG | - | chr8.2:54550466-54550485 | None:intergenic | 40.0% | |
| CTATAGGAAGAGGTTTGAGT+TGG | + | chr8.2:54551222-54551241 | MS.gene42728:CDS | 40.0% | |
| CTTGCTTGAGCTTTCTGATA+AGG | - | chr8.2:54550557-54550576 | None:intergenic | 40.0% | |
| GATTCCAGTTCTTATCCATG+AGG | + | chr8.2:54550448-54550467 | MS.gene42728:CDS | 40.0% | |
| GCTTTCTGATAAGGATCTGA+GGG | - | chr8.2:54550548-54550567 | None:intergenic | 40.0% | |
| GTATGTTTGGTATGAGAGCA+AGG | + | chr8.2:54550327-54550346 | MS.gene42728:CDS | 40.0% | |
| TAAGGATCTGAGGGTAGAAA+TGG | - | chr8.2:54550539-54550558 | None:intergenic | 40.0% | |
| TATGAGAGCAAGGATAGCAT+TGG | + | chr8.2:54550337-54550356 | MS.gene42728:CDS | 40.0% | |
| TCCTAGTGAGATGTGAGTAT+AGG | + | chr8.2:54550739-54550758 | MS.gene42728:intron | 40.0% | |
| TCCTATACTCACATCTCACT+AGG | - | chr8.2:54550743-54550762 | None:intergenic | 40.0% | |
| TGAGGTTGAATTGGCAAAGA+AGG | + | chr8.2:54550944-54550963 | MS.gene42728:CDS | 40.0% | |
| TGATGAGGTTTGGAAGGATA+AGG | + | chr8.2:54550511-54550530 | MS.gene42728:CDS | 40.0% | |
| TGATGTTGGAGGAAGGATAT+GGG | + | chr8.2:54550908-54550927 | MS.gene42728:CDS | 40.0% | |
| TTTCCCTCATGGATAAGAAC+TGG | - | chr8.2:54550455-54550474 | None:intergenic | 40.0% | |
| ! | GCAAAGAAGGAGTTGATTGA+AGG | + | chr8.2:54550957-54550976 | MS.gene42728:CDS | 40.0% |
| ! | GGAGTTGATTGAAGGCTTAA+AGG | + | chr8.2:54550965-54550984 | MS.gene42728:CDS | 40.0% |
| !! | AAAATGCAGGTTGGTGATGT+TGG | + | chr8.2:54550894-54550913 | MS.gene42728:intron | 40.0% |
| !! | AGGATAGCATTGGCTGAAAA+AGG | + | chr8.2:54550347-54550366 | MS.gene42728:CDS | 40.0% |
| !! | CTTGGAGACCAACCTTATTT+TGG | + | chr8.2:54551002-54551021 | MS.gene42728:CDS | 40.0% |
| !! | GGATAGCATTGGCTGAAAAA+GGG | + | chr8.2:54550348-54550367 | MS.gene42728:CDS | 40.0% |
| CACATCTCACTAGGAAGGAA+AGG | - | chr8.2:54550734-54550753 | None:intergenic | 45.0% | |
| GTGATGTTGGAGGAAGGATA+TGG | + | chr8.2:54550907-54550926 | MS.gene42728:CDS | 45.0% | |
| !!! | GGAGACCAACCTTATTTTGG+TGG | + | chr8.2:54551005-54551024 | MS.gene42728:CDS | 45.0% |
| !! | AGGTTGGTGATGTTGGAGGA+AGG | + | chr8.2:54550901-54550920 | MS.gene42728:intron | 50.0% |
| !! | ATGCAGGTTGGTGATGTTGG+AGG | + | chr8.2:54550897-54550916 | MS.gene42728:intron | 50.0% |
| !! | ATGGGCTGGAAAGAGAGATG+AGG | + | chr8.2:54550926-54550945 | MS.gene42728:CDS | 50.0% |
| GTTGGAGGAAGGATATGGGC+TGG | + | chr8.2:54550912-54550931 | MS.gene42728:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 54550290 | 54551262 | 54550290 | ID=MS.gene42728 |
| chr8.2 | mRNA | 54550290 | 54551262 | 54550290 | ID=MS.gene42728.t1;Parent=MS.gene42728 |
| chr8.2 | exon | 54550290 | 54550604 | 54550290 | ID=MS.gene42728.t1.exon1;Parent=MS.gene42728.t1 |
| chr8.2 | CDS | 54550290 | 54550604 | 54550290 | ID=cds.MS.gene42728.t1;Parent=MS.gene42728.t1 |
| chr8.2 | exon | 54550903 | 54551262 | 54550903 | ID=MS.gene42728.t1.exon2;Parent=MS.gene42728.t1 |
| chr8.2 | CDS | 54550903 | 54551262 | 54550903 | ID=cds.MS.gene42728.t1;Parent=MS.gene42728.t1 |
| Gene Sequence |
| Protein sequence |
