Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44012.t1 | XP_003591003.1 | 84.9 | 444 | 61 | 4 | 1 | 443 | 119 | 557 | 6.00E-179 | 637.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44012.t1 | Q8H181 | 41.6 | 514 | 203 | 13 | 1 | 438 | 118 | 610 | 1.7e-60 | 235.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44012.t1 | G7I6V9 | 84.9 | 444 | 61 | 4 | 1 | 443 | 119 | 557 | 4.4e-179 | 637.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene44012.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene44012 | 0.814039 | 1.89E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene44012 | 0.803565 | 3.28E-49 | -1.69E-46 |
| MS.gene051789 | MS.gene44012 | 0.837701 | 4.45E-57 | -1.69E-46 |
| MS.gene052286 | MS.gene44012 | 0.801899 | 7.24E-49 | -1.69E-46 |
| MS.gene052967 | MS.gene44012 | 0.809034 | 2.31E-50 | -1.69E-46 |
| MS.gene053074 | MS.gene44012 | 0.812377 | 4.37E-51 | -1.69E-46 |
| MS.gene054185 | MS.gene44012 | 0.802391 | 5.74E-49 | -1.69E-46 |
| MS.gene055133 | MS.gene44012 | 0.81271 | 3.70E-51 | -1.69E-46 |
| MS.gene055207 | MS.gene44012 | 0.825211 | 5.30E-54 | -1.69E-46 |
| MS.gene058833 | MS.gene44012 | 0.818994 | 1.47E-52 | -1.69E-46 |
| MS.gene059006 | MS.gene44012 | 0.818606 | 1.80E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44012.t1 | MTR_1g081180 | 95.270 | 444 | 15 | 4 | 1 | 443 | 119 | 557 | 0.0 | 857 |
| MS.gene44012.t1 | MTR_7g114860 | 46.059 | 406 | 144 | 14 | 1 | 393 | 136 | 479 | 6.62e-96 | 297 |
| MS.gene44012.t1 | MTR_1g098900 | 35.374 | 294 | 159 | 7 | 111 | 391 | 266 | 541 | 6.03e-48 | 174 |
| MS.gene44012.t1 | MTR_1g098900 | 40.000 | 100 | 57 | 2 | 291 | 390 | 46 | 142 | 3.17e-16 | 81.6 |
| MS.gene44012.t1 | MTR_2g026725 | 34.043 | 282 | 154 | 6 | 139 | 414 | 117 | 372 | 2.04e-37 | 140 |
| MS.gene44012.t1 | MTR_1g098870 | 34.363 | 259 | 136 | 4 | 136 | 393 | 236 | 461 | 1.92e-35 | 138 |
| MS.gene44012.t1 | MTR_1g098870 | 40.217 | 92 | 52 | 2 | 302 | 393 | 55 | 143 | 2.96e-14 | 75.1 |
| MS.gene44012.t1 | MTR_6g035370 | 59.783 | 92 | 35 | 1 | 302 | 393 | 464 | 553 | 6.41e-28 | 117 |
| MS.gene44012.t1 | MTR_6g035370 | 40.860 | 93 | 52 | 2 | 300 | 392 | 53 | 142 | 1.57e-15 | 79.3 |
| MS.gene44012.t1 | MTR_1g492790 | 36.090 | 133 | 72 | 4 | 265 | 387 | 68 | 197 | 2.63e-15 | 78.2 |
| MS.gene44012.t1 | MTR_1g060990 | 29.048 | 210 | 135 | 6 | 10 | 209 | 161 | 366 | 3.89e-15 | 77.8 |
| MS.gene44012.t1 | MTR_1g060990 | 39.785 | 93 | 52 | 3 | 302 | 393 | 131 | 220 | 9.39e-13 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44012.t1 | AT5G28300 | 41.618 | 519 | 196 | 17 | 1 | 438 | 118 | 610 | 6.43e-93 | 293 |
| MS.gene44012.t1 | AT1G76890 | 38.806 | 268 | 130 | 4 | 127 | 393 | 252 | 486 | 1.16e-47 | 172 |
| MS.gene44012.t1 | AT1G76890 | 47.059 | 85 | 42 | 2 | 300 | 384 | 39 | 120 | 1.40e-16 | 82.4 |
| MS.gene44012.t1 | AT1G76880 | 58.696 | 92 | 36 | 1 | 302 | 393 | 408 | 497 | 1.42e-28 | 119 |
| MS.gene44012.t1 | AT1G76880 | 39.048 | 105 | 61 | 2 | 300 | 404 | 59 | 160 | 3.05e-15 | 78.6 |
| MS.gene44012.t1 | AT1G33240 | 51.786 | 112 | 43 | 2 | 302 | 404 | 435 | 544 | 4.96e-27 | 114 |
| MS.gene44012.t1 | AT1G33240 | 43.820 | 89 | 47 | 2 | 302 | 390 | 62 | 147 | 2.89e-17 | 84.7 |
| MS.gene44012.t1 | AT1G33240 | 51.786 | 112 | 43 | 2 | 302 | 404 | 435 | 544 | 5.92e-27 | 114 |
| MS.gene44012.t1 | AT1G33240 | 43.820 | 89 | 47 | 2 | 302 | 390 | 62 | 147 | 3.01e-17 | 84.7 |
| MS.gene44012.t1 | AT1G33240 | 51.786 | 112 | 43 | 2 | 302 | 404 | 396 | 505 | 6.13e-27 | 114 |
| MS.gene44012.t1 | AT5G47660 | 33.582 | 268 | 130 | 12 | 124 | 391 | 169 | 388 | 6.76e-20 | 91.7 |
| MS.gene44012.t1 | AT3G10000 | 40.000 | 95 | 54 | 2 | 302 | 395 | 88 | 180 | 1.20e-14 | 76.3 |
| MS.gene44012.t1 | AT5G03680 | 42.857 | 91 | 48 | 3 | 302 | 391 | 119 | 206 | 8.41e-14 | 73.9 |
| MS.gene44012.t1 | AT3G10000 | 36.170 | 94 | 49 | 2 | 302 | 395 | 88 | 170 | 9.50e-12 | 67.4 |
Find 83 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATAGATTTGAAGTGTTTA+AGG | 0.195477 | 1.3:-57439148 | MS.gene44012:CDS |
| ATAAGGCTATATGAAGAAAT+AGG | 0.236435 | 1.3:+57438688 | None:intergenic |
| CTCTCTCGCTGCTCGATATA+AGG | 0.299308 | 1.3:+57438671 | None:intergenic |
| TCCTTCTTCTTCTACTACTT+TGG | 0.306363 | 1.3:-57438734 | MS.gene44012:CDS |
| AATGCCAACACTTCATCTTT+TGG | 0.317647 | 1.3:+57438628 | None:intergenic |
| AATCATAATCAAAATAGTTT+TGG | 0.326250 | 1.3:-57439402 | MS.gene44012:CDS |
| AGGGTTGAGCTAGGGTTTAC+AGG | 0.337022 | 1.3:+57438757 | None:intergenic |
| TTTCAAGAGTTTCCGGATTA+GGG | 0.337138 | 1.3:+57438797 | None:intergenic |
| TCACAAGGAATGTTGGAGTT+AGG | 0.345818 | 1.3:-57438526 | MS.gene44012:CDS |
| ACATGTTCCCAAGTGAAATC+TGG | 0.352061 | 1.3:+57439942 | None:intergenic |
| GAACGAGGTGCAAGACAAAA+TGG | 0.355649 | 1.3:-57439289 | MS.gene44012:CDS |
| GAACAAAGAGCTTGAGTTGA+TGG | 0.361917 | 1.3:-57438986 | MS.gene44012:CDS |
| GAGCTAGGGTTTACAGGTAT+TGG | 0.369227 | 1.3:+57438763 | None:intergenic |
| GATAGATTTGAAGTGTTTAA+GGG | 0.370463 | 1.3:-57439147 | MS.gene44012:CDS |
| AGCAGCGAGAGAGACGATAT+TGG | 0.377007 | 1.3:-57438661 | MS.gene44012:CDS |
| GAAGAAGGAAGGGTTGAGCT+AGG | 0.386310 | 1.3:+57438748 | None:intergenic |
| CAACAACAAGGCACCACTTT+GGG | 0.393210 | 1.3:-57438557 | MS.gene44012:CDS |
| TTCTTCTTCTACTACTTTGG+TGG | 0.410965 | 1.3:-57438731 | MS.gene44012:CDS |
| AGTTTAGTAGAGAAGAAGCT+TGG | 0.425700 | 1.3:-57439032 | MS.gene44012:CDS |
| TTGAGCAATCTTTATAATCA+AGG | 0.426028 | 1.3:-57438379 | MS.gene44012:CDS |
| GAGAAGAAGAGGAAAAGATC+AGG | 0.430204 | 1.3:-57439174 | MS.gene44012:CDS |
| TAAGGCTATATGAAGAAATA+GGG | 0.437015 | 1.3:+57438689 | None:intergenic |
| GAGAATTTCACAAGGAATGT+TGG | 0.441400 | 1.3:-57438533 | MS.gene44012:CDS |
| CAACAACAACAATGAAGAAA+AGG | 0.456418 | 1.3:-57438590 | MS.gene44012:CDS |
| CACCTGCACCAGCACCATCT+TGG | 0.460031 | 1.3:+57438260 | None:intergenic |
| AAATCTAGTTGAGGCTGAAA+AGG | 0.460400 | 1.3:-57439313 | MS.gene44012:CDS |
| AAGAAGGAAGGGTTGAGCTA+GGG | 0.460441 | 1.3:+57438749 | None:intergenic |
| TTGCTCAATAGATGAAAGTA+AGG | 0.463276 | 1.3:+57438394 | None:intergenic |
| GAGGTTTATCAAGGTGGTGG+GGG | 0.479843 | 1.3:-57439348 | MS.gene44012:CDS |
| CTCAAGTGGGGCCTCCAAGC+TGG | 0.484767 | 1.3:-57438231 | MS.gene44012:CDS |
| TTCAAGAATGGATGATGTAT+TGG | 0.485834 | 1.3:-57439247 | MS.gene44012:CDS |
| CAAAGGATGCTAATAGGAAA+AGG | 0.488346 | 1.3:-57438438 | MS.gene44012:CDS |
| GCAACAACAAGGCACCACTT+TGG | 0.490808 | 1.3:-57438558 | MS.gene44012:CDS |
| GTCAAAGAAAAGTGAAGAAG+AGG | 0.493141 | 1.3:-57439223 | MS.gene44012:CDS |
| TGAAGATGACATTGAAGCTA+AGG | 0.499602 | 1.3:+57438879 | None:intergenic |
| GAAGAAGAGGTAGTTGAGAA+AGG | 0.502624 | 1.3:-57439210 | MS.gene44012:CDS |
| GCACATGAACAAGCTATTGC+TGG | 0.507249 | 1.3:-57438964 | MS.gene44012:CDS |
| CATGTTCCCAAGTGAAATCT+GGG | 0.514235 | 1.3:+57439943 | None:intergenic |
| GCAGGTGAGTCTTCTCAAGT+GGG | 0.514949 | 1.3:-57438244 | MS.gene44012:CDS |
| GTTGGTTCCCAGATTTCACT+TGG | 0.516402 | 1.3:-57439950 | MS.gene44012:CDS |
| GCACTCACAAAACCCTAATC+CGG | 0.519084 | 1.3:-57438809 | MS.gene44012:CDS |
| GAAGAGGTTTATCAAGGTGG+TGG | 0.520513 | 1.3:-57439351 | MS.gene44012:CDS |
| AACCAAGATGGTGCTGGTGC+AGG | 0.525566 | 1.3:-57438262 | MS.gene44012:CDS |
| GTTTGTTACTGAGCTGGAAG+AGG | 0.529219 | 1.3:-57439367 | MS.gene44012:CDS |
| TGCAGGTGAGTCTTCTCAAG+TGG | 0.532154 | 1.3:-57438245 | MS.gene44012:CDS |
| AAGTAGTAGAAGAAGAAGGA+AGG | 0.534716 | 1.3:+57438737 | None:intergenic |
| GAGACGATATTGGTAGAAGA+TGG | 0.544390 | 1.3:-57438651 | MS.gene44012:CDS |
| CAAAGAGGTGCAAAGAGAAG+TGG | 0.549838 | 1.3:-57438489 | MS.gene44012:CDS |
| TGTAGAGGAGGATTCAAGAA+TGG | 0.554166 | 1.3:-57439259 | MS.gene44012:CDS |
| AGAGGTTTATCAAGGTGGTG+GGG | 0.556530 | 1.3:-57439349 | MS.gene44012:CDS |
| TAGTGAAATTACCAGCTTGG+AGG | 0.560803 | 1.3:+57438220 | None:intergenic |
| TCAGATCCAGCATGGAGAGT+TGG | 0.563903 | 1.3:-57439968 | None:intergenic |
| CTACAAATGATGAGAAGAAG+AGG | 0.565637 | 1.3:-57439185 | MS.gene44012:CDS |
| ACCAAAGTAGTAGAAGAAGA+AGG | 0.573800 | 1.3:+57438733 | None:intergenic |
| ATGGCCAAAAGATGAAGTGT+TGG | 0.578682 | 1.3:-57438632 | MS.gene44012:CDS |
| AAGAGGTTTATCAAGGTGGT+GGG | 0.581021 | 1.3:-57439350 | MS.gene44012:CDS |
| CTTGAATCCTCCTCTACATG+AGG | 0.583768 | 1.3:+57439264 | None:intergenic |
| AAAGAGGTGCAAAGAGAAGT+GGG | 0.586402 | 1.3:-57438488 | MS.gene44012:CDS |
| GAGCTGGAAGAGGTTTATCA+AGG | 0.586678 | 1.3:-57439357 | MS.gene44012:CDS |
| ATATAGTGAAATTACCAGCT+TGG | 0.588322 | 1.3:+57438217 | None:intergenic |
| AGTAGTAGAAGAAGAAGGAA+GGG | 0.592188 | 1.3:+57438738 | None:intergenic |
| GAGTGTGGTGAAGAAAATGA+TGG | 0.595280 | 1.3:-57439115 | MS.gene44012:CDS |
| GAAATAGGGTTGTTCTTGCG+AGG | 0.598239 | 1.3:+57438703 | None:intergenic |
| TGTGAAATTCTCTCCCAAAG+TGG | 0.599247 | 1.3:+57438544 | None:intergenic |
| AGCTTGGAAGAAACAAGAGA+TGG | 0.599559 | 1.3:-57439016 | MS.gene44012:CDS |
| CTTTGGGAGAGAATTTCACA+AGG | 0.610777 | 1.3:-57438541 | MS.gene44012:CDS |
| CAAAATGGACCCTCATGTAG+AGG | 0.618548 | 1.3:-57439274 | MS.gene44012:CDS |
| GATGAAAACCAAGATGGTGC+TGG | 0.618902 | 1.3:-57438268 | MS.gene44012:CDS |
| TCACTTGGGAACATGTCTCA+AGG | 0.620742 | 1.3:-57439935 | MS.gene44012:intron |
| AACAACAATGAAGAAAAGGA+AGG | 0.621045 | 1.3:-57438586 | MS.gene44012:CDS |
| AGAAAGCAATAACGTGAATG+TGG | 0.625602 | 1.3:-57438326 | MS.gene44012:CDS |
| CAGGTGAGTCTTCTCAAGTG+GGG | 0.628435 | 1.3:-57438243 | MS.gene44012:CDS |
| TTGAATCCTCCTCTACATGA+GGG | 0.632417 | 1.3:+57439265 | None:intergenic |
| TTGGTTCCCAGATTTCACTT+GGG | 0.635745 | 1.3:-57439949 | MS.gene44012:CDS |
| CACAGGAAGCTAGCTGACGT+TGG | 0.645573 | 1.3:-57439498 | MS.gene44012:intron |
| ACACAAGATGAAAACCAAGA+TGG | 0.647031 | 1.3:-57438274 | MS.gene44012:CDS |
| AATGGACCCTCATGTAGAGG+AGG | 0.651973 | 1.3:-57439271 | MS.gene44012:CDS |
| CTGGAAGAGGTTTATCAAGG+TGG | 0.657958 | 1.3:-57439354 | MS.gene44012:CDS |
| TGAGGCTGAAAAGGCGAACG+AGG | 0.666720 | 1.3:-57439304 | MS.gene44012:CDS |
| TGTTGGCATTGATAAACTTG+AGG | 0.669533 | 1.3:-57438615 | MS.gene44012:CDS |
| GATACAAGAGAAGTGCAAAG+AGG | 0.678975 | 1.3:-57438504 | MS.gene44012:CDS |
| GGAAGGAAATAGCAACAACA+AGG | 0.682423 | 1.3:-57438569 | MS.gene44012:CDS |
| GAATGTGGCTGAAGAAAATG+TGG | 0.683811 | 1.3:-57438311 | MS.gene44012:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATGATTAATTGTTTTTT+TGG | - | chr1.3:57438644-57438663 | MS.gene44012:CDS | 10.0% |
| !!! | TTTTTGGATTTAAATATTTA+CGG | - | chr1.3:57438660-57438679 | MS.gene44012:CDS | 10.0% |
| !! | TAGCTCATATTATTAATTAT+TGG | + | chr1.3:57438348-57438367 | None:intergenic | 15.0% |
| !! | TTGTTAATGATTTGATTAAA+TGG | + | chr1.3:57438320-57438339 | None:intergenic | 15.0% |
| !!! | AATCATAATCAAAATAGTTT+TGG | - | chr1.3:57438783-57438802 | MS.gene44012:CDS | 15.0% |
| !!! | ATAGTTTTGGTAAGAATTTT+AGG | - | chr1.3:57438796-57438815 | MS.gene44012:CDS | 20.0% |
| !!! | TATTAAAAAAAGTATCCATG+TGG | - | chr1.3:57438458-57438477 | MS.gene44012:CDS | 20.0% |
| ! | ATAAGGCTATATGAAGAAAT+AGG | + | chr1.3:57439500-57439519 | None:intergenic | 25.0% |
| ! | GAATAACAAAAATCTAGTTG+AGG | - | chr1.3:57438863-57438882 | MS.gene44012:CDS | 25.0% |
| ! | TAAGGCTATATGAAGAAATA+GGG | + | chr1.3:57439499-57439518 | None:intergenic | 25.0% |
| ! | TTAAGAAAAGAAGAAATTCG+TGG | + | chr1.3:57438405-57438424 | None:intergenic | 25.0% |
| ! | TTGAGCAATCTTTATAATCA+AGG | - | chr1.3:57439806-57439825 | MS.gene44012:intron | 25.0% |
| !! | AATTCTGTTCCTTCAATTTT+TGG | + | chr1.3:57438563-57438582 | None:intergenic | 25.0% |
| !! | GATAGATTTGAAGTGTTTAA+GGG | - | chr1.3:57439038-57439057 | MS.gene44012:CDS | 25.0% |
| !! | TGATAGATTTGAAGTGTTTA+AGG | - | chr1.3:57439037-57439056 | MS.gene44012:CDS | 25.0% |
| AACAACAATGAAGAAAAGGA+AGG | - | chr1.3:57439599-57439618 | MS.gene44012:intron | 30.0% | |
| CAACAACAACAATGAAGAAA+AGG | - | chr1.3:57439595-57439614 | MS.gene44012:intron | 30.0% | |
| CAAGTACTTCAGAAAAACAA+AGG | - | chr1.3:57439730-57439749 | MS.gene44012:intron | 30.0% | |
| GAAAAACAAAGGATGCTAAT+AGG | - | chr1.3:57439741-57439760 | MS.gene44012:intron | 30.0% | |
| GAAATAGGACCAAAAATTGA+AGG | - | chr1.3:57438551-57438570 | MS.gene44012:CDS | 30.0% | |
| TGATTAAATGGATGAAGTGA+AGG | + | chr1.3:57438308-57438327 | None:intergenic | 30.0% | |
| TTCAAGAATGGATGATGTAT+TGG | - | chr1.3:57438938-57438957 | MS.gene44012:CDS | 30.0% | |
| TTGCTCAATAGATGAAAGTA+AGG | + | chr1.3:57439794-57439813 | None:intergenic | 30.0% | |
| !!! | AGAGTTTTTTCAAGAGTTTC+CGG | + | chr1.3:57439398-57439417 | None:intergenic | 30.0% |
| AAATCTAGTTGAGGCTGAAA+AGG | - | chr1.3:57438872-57438891 | MS.gene44012:CDS | 35.0% | |
| AAGTAGTAGAAGAAGAAGGA+AGG | + | chr1.3:57439451-57439470 | None:intergenic | 35.0% | |
| ACACAAGATGAAAACCAAGA+TGG | - | chr1.3:57439911-57439930 | MS.gene44012:intron | 35.0% | |
| ACCAAAGTAGTAGAAGAAGA+AGG | + | chr1.3:57439455-57439474 | None:intergenic | 35.0% | |
| AGAAAGCAATAACGTGAATG+TGG | - | chr1.3:57439859-57439878 | MS.gene44012:intron | 35.0% | |
| AGTAGTAGAAGAAGAAGGAA+GGG | + | chr1.3:57439450-57439469 | None:intergenic | 35.0% | |
| AGTTTAGTAGAGAAGAAGCT+TGG | - | chr1.3:57439153-57439172 | MS.gene44012:CDS | 35.0% | |
| CAAAGGATGCTAATAGGAAA+AGG | - | chr1.3:57439747-57439766 | MS.gene44012:intron | 35.0% | |
| CTACAAATGATGAGAAGAAG+AGG | - | chr1.3:57439000-57439019 | MS.gene44012:CDS | 35.0% | |
| GAGAATTTCACAAGGAATGT+TGG | - | chr1.3:57439652-57439671 | MS.gene44012:intron | 35.0% | |
| GTCAAAGAAAAGTGAAGAAG+AGG | - | chr1.3:57438962-57438981 | MS.gene44012:CDS | 35.0% | |
| TAAATATTTACGGTGTGCAC+AGG | - | chr1.3:57438670-57438689 | MS.gene44012:CDS | 35.0% | |
| TCCTTCTTCTTCTACTACTT+TGG | - | chr1.3:57439451-57439470 | MS.gene44012:CDS | 35.0% | |
| TGAAGATGACATTGAAGCTA+AGG | + | chr1.3:57439309-57439328 | None:intergenic | 35.0% | |
| TTCTTCTTCTACTACTTTGG+TGG | - | chr1.3:57439454-57439473 | MS.gene44012:CDS | 35.0% | |
| TTTCAAGAGTTTCCGGATTA+GGG | + | chr1.3:57439391-57439410 | None:intergenic | 35.0% | |
| ! | AATGCCAACACTTCATCTTT+TGG | + | chr1.3:57439560-57439579 | None:intergenic | 35.0% |
| !! | TGTTGGCATTGATAAACTTG+AGG | - | chr1.3:57439570-57439589 | MS.gene44012:intron | 35.0% |
| !! | TTTTCAAGAGTTTCCGGATT+AGG | + | chr1.3:57439392-57439411 | None:intergenic | 35.0% |
| !!! | TTTTAGGTTTGTTACTGAGC+TGG | - | chr1.3:57438812-57438831 | MS.gene44012:CDS | 35.0% |
| AAGAGGTTTATCAAGGTGGT+GGG | - | chr1.3:57438835-57438854 | MS.gene44012:CDS | 40.0% | |
| ACATGTTCCCAAGTGAAATC+TGG | + | chr1.3:57438246-57438265 | None:intergenic | 40.0% | |
| AGCTTGGAAGAAACAAGAGA+TGG | - | chr1.3:57439169-57439188 | MS.gene44012:CDS | 40.0% | |
| ATGGCCAAAAGATGAAGTGT+TGG | - | chr1.3:57439553-57439572 | MS.gene44012:intron | 40.0% | |
| CATGTTCCCAAGTGAAATCT+GGG | + | chr1.3:57438245-57438264 | None:intergenic | 40.0% | |
| GAAGAAGAGGTAGTTGAGAA+AGG | - | chr1.3:57438975-57438994 | MS.gene44012:CDS | 40.0% | |
| GAATGTGGCTGAAGAAAATG+TGG | - | chr1.3:57439874-57439893 | MS.gene44012:intron | 40.0% | |
| GAGAAGAAGAGGAAAAGATC+AGG | - | chr1.3:57439011-57439030 | MS.gene44012:CDS | 40.0% | |
| GAGACGATATTGGTAGAAGA+TGG | - | chr1.3:57439534-57439553 | MS.gene44012:intron | 40.0% | |
| GAGTGTGGTGAAGAAAATGA+TGG | - | chr1.3:57439070-57439089 | MS.gene44012:CDS | 40.0% | |
| GGAAGGAAATAGCAACAACA+AGG | - | chr1.3:57439616-57439635 | MS.gene44012:intron | 40.0% | |
| GTGTTTGTGAGCTGAATTGA+AGG | + | chr1.3:57438504-57438523 | None:intergenic | 40.0% | |
| TCACAAGGAATGTTGGAGTT+AGG | - | chr1.3:57439659-57439678 | MS.gene44012:intron | 40.0% | |
| TGTAGAGGAGGATTCAAGAA+TGG | - | chr1.3:57438926-57438945 | MS.gene44012:CDS | 40.0% | |
| TGTGAAATTCTCTCCCAAAG+TGG | + | chr1.3:57439644-57439663 | None:intergenic | 40.0% | |
| TTGAATCCTCCTCTACATGA+GGG | + | chr1.3:57438923-57438942 | None:intergenic | 40.0% | |
| TTGGTTCCCAGATTTCACTT+GGG | - | chr1.3:57438236-57438255 | MS.gene44012:CDS | 40.0% | |
| ! | AAAGAGGTGCAAAGAGAAGT+GGG | - | chr1.3:57439697-57439716 | MS.gene44012:intron | 40.0% |
| ! | ACGTAGTGCTGAAAAATGCA+AGG | - | chr1.3:57438716-57438735 | MS.gene44012:CDS | 40.0% |
| ! | CTTTGGGAGAGAATTTCACA+AGG | - | chr1.3:57439644-57439663 | MS.gene44012:intron | 40.0% |
| ! | GATACAAGAGAAGTGCAAAG+AGG | - | chr1.3:57439681-57439700 | MS.gene44012:intron | 40.0% |
| ! | TAAGGGTTTTTGTGAGAGTG+TGG | - | chr1.3:57439055-57439074 | MS.gene44012:CDS | 40.0% |
| !! | GAACAAAGAGCTTGAGTTGA+TGG | - | chr1.3:57439199-57439218 | MS.gene44012:CDS | 40.0% |
| !! | TTTTGGTCCTATTTCTCTCG+AGG | + | chr1.3:57438546-57438565 | None:intergenic | 40.0% |
| AAGAAGGAAGGGTTGAGCTA+GGG | + | chr1.3:57439439-57439458 | None:intergenic | 45.0% | |
| ACACACACCTCGAGAGAAAT+AGG | - | chr1.3:57438536-57438555 | MS.gene44012:CDS | 45.0% | |
| AGAGGTTTATCAAGGTGGTG+GGG | - | chr1.3:57438836-57438855 | MS.gene44012:CDS | 45.0% | |
| CAAAATGGACCCTCATGTAG+AGG | - | chr1.3:57438911-57438930 | MS.gene44012:CDS | 45.0% | |
| CTGGAAGAGGTTTATCAAGG+TGG | - | chr1.3:57438831-57438850 | MS.gene44012:CDS | 45.0% | |
| CTTGAATCCTCCTCTACATG+AGG | + | chr1.3:57438924-57438943 | None:intergenic | 45.0% | |
| GAAATAGGGTTGTTCTTGCG+AGG | + | chr1.3:57439485-57439504 | None:intergenic | 45.0% | |
| GAACGAGGTGCAAGACAAAA+TGG | - | chr1.3:57438896-57438915 | MS.gene44012:CDS | 45.0% | |
| GAAGAGGTTTATCAAGGTGG+TGG | - | chr1.3:57438834-57438853 | MS.gene44012:CDS | 45.0% | |
| GAGCTAGGGTTTACAGGTAT+TGG | + | chr1.3:57439425-57439444 | None:intergenic | 45.0% | |
| GAGCTGGAAGAGGTTTATCA+AGG | - | chr1.3:57438828-57438847 | MS.gene44012:CDS | 45.0% | |
| GATGAAAACCAAGATGGTGC+TGG | - | chr1.3:57439917-57439936 | MS.gene44012:intron | 45.0% | |
| GCACATGAACAAGCTATTGC+TGG | - | chr1.3:57439221-57439240 | MS.gene44012:CDS | 45.0% | |
| GCACTCACAAAACCCTAATC+CGG | - | chr1.3:57439376-57439395 | MS.gene44012:CDS | 45.0% | |
| GTGTGTCTTTGTCTACCACA+TGG | + | chr1.3:57438476-57438495 | None:intergenic | 45.0% | |
| TCACTTGGGAACATGTCTCA+AGG | - | chr1.3:57438250-57438269 | MS.gene44012:CDS | 45.0% | |
| ! | CAAAGAGGTGCAAAGAGAAG+TGG | - | chr1.3:57439696-57439715 | MS.gene44012:intron | 45.0% |
| ! | CAACAACAAGGCACCACTTT+GGG | - | chr1.3:57439628-57439647 | MS.gene44012:intron | 45.0% |
| ! | GTTGGTTCCCAGATTTCACT+TGG | - | chr1.3:57438235-57438254 | MS.gene44012:CDS | 45.0% |
| ! | GTTTGTTACTGAGCTGGAAG+AGG | - | chr1.3:57438818-57438837 | MS.gene44012:CDS | 45.0% |
| AATGGACCCTCATGTAGAGG+AGG | - | chr1.3:57438914-57438933 | MS.gene44012:CDS | 50.0% | |
| AGCAGCGAGAGAGACGATAT+TGG | - | chr1.3:57439524-57439543 | MS.gene44012:intron | 50.0% | |
| AGGGTTGAGCTAGGGTTTAC+AGG | + | chr1.3:57439431-57439450 | None:intergenic | 50.0% | |
| CAGGTGAGTCTTCTCAAGTG+GGG | - | chr1.3:57439942-57439961 | MS.gene44012:CDS | 50.0% | |
| CTCTCTCGCTGCTCGATATA+AGG | + | chr1.3:57439517-57439536 | None:intergenic | 50.0% | |
| GAAGAAGGAAGGGTTGAGCT+AGG | + | chr1.3:57439440-57439459 | None:intergenic | 50.0% | |
| GCAGGTGAGTCTTCTCAAGT+GGG | - | chr1.3:57439941-57439960 | MS.gene44012:CDS | 50.0% | |
| TGCAGGTGAGTCTTCTCAAG+TGG | - | chr1.3:57439940-57439959 | MS.gene44012:CDS | 50.0% | |
| ! | GAGGTTTATCAAGGTGGTGG+GGG | - | chr1.3:57438837-57438856 | MS.gene44012:CDS | 50.0% |
| ! | GCAACAACAAGGCACCACTT+TGG | - | chr1.3:57439627-57439646 | MS.gene44012:intron | 50.0% |
| CACAGGAAGCTAGCTGACGT+TGG | - | chr1.3:57438687-57438706 | MS.gene44012:CDS | 55.0% | |
| TGAGGCTGAAAAGGCGAACG+AGG | - | chr1.3:57438881-57438900 | MS.gene44012:CDS | 55.0% | |
| !! | AACCAAGATGGTGCTGGTGC+AGG | - | chr1.3:57439923-57439942 | MS.gene44012:intron | 55.0% |
| CACCTGCACCAGCACCATCT+TGG | + | chr1.3:57439928-57439947 | None:intergenic | 60.0% | |
| CTCTCGAGGTGTGTGTCTCG+TGG | + | chr1.3:57438532-57438551 | None:intergenic | 60.0% | |
| CTCAAGTGGGGCCTCCAAGC+TGG | - | chr1.3:57439954-57439973 | MS.gene44012:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 57438228 | 57439979 | 57438228 | ID=MS.gene44012 |
| chr1.3 | mRNA | 57438228 | 57439979 | 57438228 | ID=MS.gene44012.t1;Parent=MS.gene44012 |
| chr1.3 | exon | 57439936 | 57439979 | 57439936 | ID=MS.gene44012.t1.exon1;Parent=MS.gene44012.t1 |
| chr1.3 | CDS | 57439936 | 57439979 | 57439936 | ID=cds.MS.gene44012.t1;Parent=MS.gene44012.t1 |
| chr1.3 | exon | 57438228 | 57439515 | 57438228 | ID=MS.gene44012.t1.exon2;Parent=MS.gene44012.t1 |
| chr1.3 | CDS | 57438228 | 57439515 | 57438228 | ID=cds.MS.gene44012.t1;Parent=MS.gene44012.t1 |
| Gene Sequence |
| Protein sequence |
