Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44142.t1 | XP_003604118.1 | 79.8 | 322 | 14 | 4 | 1 | 271 | 1 | 322 | 1.60E-142 | 515.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44142.t1 | I6YGS0 | 29.8 | 329 | 157 | 10 | 1 | 268 | 1 | 316 | 2.3e-36 | 154.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44142.t1 | G7JUF4 | 79.8 | 322 | 14 | 4 | 1 | 271 | 1 | 322 | 1.2e-142 | 515.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050329 | MS.gene44142 | 0.819244 | 1.29E-52 | -1.69E-46 |
| MS.gene051996 | MS.gene44142 | 0.820364 | 7.13E-53 | -1.69E-46 |
| MS.gene052211 | MS.gene44142 | 0.808232 | 3.43E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene44142 | 0.82187 | 3.21E-53 | -1.69E-46 |
| MS.gene054277 | MS.gene44142 | 0.840667 | 7.58E-58 | -1.69E-46 |
| MS.gene054742 | MS.gene44142 | 0.842567 | 2.39E-58 | -1.69E-46 |
| MS.gene055240 | MS.gene44142 | 0.806893 | 6.59E-50 | -1.69E-46 |
| MS.gene056076 | MS.gene44142 | 0.845258 | 4.54E-59 | -1.69E-46 |
| MS.gene056330 | MS.gene44142 | 0.835362 | 1.75E-56 | -1.69E-46 |
| MS.gene056680 | MS.gene44142 | 0.807803 | 4.23E-50 | -1.69E-46 |
| MS.gene056920 | MS.gene44142 | 0.820361 | 7.14E-53 | -1.69E-46 |
| MS.gene056922 | MS.gene44142 | 0.814822 | 1.27E-51 | -1.69E-46 |
| MS.gene059891 | MS.gene44142 | 0.8017 | 7.96E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene44142 | 0.80155 | 8.54E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44142.t1 | MTR_4g005160 | 79.814 | 322 | 14 | 4 | 1 | 271 | 1 | 322 | 0.0 | 501 |
| MS.gene44142.t1 | MTR_7g113030 | 59.443 | 323 | 75 | 7 | 1 | 271 | 1 | 319 | 2.26e-130 | 372 |
| MS.gene44142.t1 | MTR_7g113050 | 59.133 | 323 | 76 | 7 | 1 | 271 | 1 | 319 | 8.77e-130 | 370 |
| MS.gene44142.t1 | MTR_7g113020 | 59.443 | 323 | 75 | 7 | 1 | 271 | 1 | 319 | 1.42e-129 | 370 |
| MS.gene44142.t1 | MTR_7g112615 | 59.133 | 323 | 76 | 7 | 1 | 271 | 1 | 319 | 1.01e-128 | 368 |
| MS.gene44142.t1 | MTR_7g112620 | 58.514 | 323 | 78 | 7 | 1 | 271 | 1 | 319 | 2.84e-128 | 367 |
| MS.gene44142.t1 | MTR_7g112970 | 57.764 | 322 | 79 | 7 | 1 | 271 | 1 | 316 | 1.72e-124 | 357 |
| MS.gene44142.t1 | MTR_7g112960 | 56.966 | 323 | 83 | 7 | 1 | 271 | 1 | 319 | 1.33e-121 | 350 |
| MS.gene44142.t1 | MTR_7g112963 | 55.728 | 323 | 87 | 6 | 1 | 271 | 1 | 319 | 6.84e-118 | 340 |
| MS.gene44142.t1 | MTR_7g108825 | 48.447 | 322 | 110 | 6 | 1 | 271 | 1 | 317 | 2.25e-96 | 286 |
| MS.gene44142.t1 | MTR_4g120240 | 47.678 | 323 | 113 | 7 | 1 | 271 | 37 | 355 | 7.93e-95 | 283 |
| MS.gene44142.t1 | MTR_7g113010 | 54.035 | 285 | 75 | 8 | 1 | 233 | 1 | 281 | 2.69e-90 | 279 |
| MS.gene44142.t1 | MTR_1g083480 | 81.013 | 158 | 5 | 1 | 1 | 133 | 1 | 158 | 1.56e-87 | 258 |
| MS.gene44142.t1 | MTR_7g113050 | 56.846 | 241 | 49 | 6 | 1 | 189 | 1 | 238 | 1.64e-85 | 255 |
| MS.gene44142.t1 | MTR_7g112615 | 56.432 | 241 | 50 | 6 | 1 | 189 | 1 | 238 | 8.39e-84 | 251 |
| MS.gene44142.t1 | MTR_8g076680 | 37.072 | 321 | 146 | 6 | 1 | 271 | 3 | 317 | 2.91e-66 | 209 |
| MS.gene44142.t1 | MTR_7g112615 | 60.625 | 160 | 34 | 3 | 1 | 134 | 1 | 157 | 1.97e-60 | 189 |
| MS.gene44142.t1 | MTR_7g108825 | 45.833 | 240 | 75 | 5 | 1 | 189 | 1 | 236 | 7.20e-60 | 190 |
| MS.gene44142.t1 | MTR_8g076680 | 37.238 | 239 | 97 | 3 | 1 | 189 | 3 | 238 | 3.02e-49 | 163 |
| MS.gene44142.t1 | MTR_7g112910 | 41.333 | 225 | 72 | 7 | 74 | 271 | 4 | 195 | 1.80e-42 | 144 |
| MS.gene44142.t1 | MTR_2g090240 | 30.341 | 323 | 159 | 9 | 1 | 270 | 1 | 310 | 2.11e-39 | 139 |
| MS.gene44142.t1 | MTR_4g089060 | 28.793 | 323 | 163 | 8 | 1 | 270 | 1 | 309 | 5.06e-39 | 138 |
| MS.gene44142.t1 | MTR_4g089040 | 29.102 | 323 | 162 | 9 | 1 | 270 | 1 | 309 | 2.35e-38 | 137 |
| MS.gene44142.t1 | MTR_2g090245 | 29.321 | 324 | 161 | 9 | 1 | 270 | 1 | 310 | 5.38e-37 | 133 |
| MS.gene44142.t1 | MTR_4g089060 | 29.487 | 234 | 105 | 5 | 1 | 182 | 1 | 226 | 2.43e-30 | 114 |
| MS.gene44142.t1 | MTR_4g089060 | 46.465 | 99 | 52 | 1 | 1 | 98 | 1 | 99 | 7.33e-28 | 109 |
| MS.gene44142.t1 | MTR_3g024250 | 47.154 | 123 | 36 | 3 | 45 | 141 | 1 | 120 | 2.05e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44142.t1 | AT3G05600 | 48.171 | 328 | 109 | 7 | 1 | 271 | 1 | 324 | 3.24e-103 | 304 |
| MS.gene44142.t1 | AT4G02340 | 45.000 | 320 | 123 | 5 | 1 | 271 | 1 | 316 | 9.33e-95 | 282 |
| MS.gene44142.t1 | AT4G15960 | 43.598 | 328 | 124 | 5 | 1 | 271 | 51 | 374 | 5.51e-86 | 261 |
| MS.gene44142.t1 | AT4G15955 | 45.806 | 310 | 118 | 7 | 3 | 271 | 4 | 304 | 8.95e-83 | 251 |
| MS.gene44142.t1 | AT2G26740 | 45.679 | 324 | 117 | 7 | 4 | 271 | 1 | 321 | 5.85e-80 | 244 |
| MS.gene44142.t1 | AT2G26750 | 43.963 | 323 | 123 | 7 | 4 | 271 | 1 | 320 | 1.09e-75 | 233 |
| MS.gene44142.t1 | AT3G05600 | 45.935 | 246 | 73 | 6 | 1 | 189 | 1 | 243 | 4.80e-68 | 211 |
| MS.gene44142.t1 | AT3G51000 | 38.199 | 322 | 140 | 10 | 3 | 271 | 4 | 319 | 7.57e-62 | 198 |
| MS.gene44142.t1 | AT4G15955 | 49.405 | 168 | 46 | 4 | 3 | 134 | 4 | 168 | 2.65e-46 | 153 |
| MS.gene44142.t1 | AT4G15955 | 46.629 | 178 | 56 | 4 | 3 | 144 | 4 | 178 | 4.80e-46 | 152 |
Find 83 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGTGGCCCCTGATCTTC+GGG | 0.210716 | 1.3:-59060036 | MS.gene44142:CDS |
| TGATGTCTTGTGCTGCTTCT+TGG | 0.213872 | 1.3:+59059042 | None:intergenic |
| CTATTATGTGTGCAGATTTC+AGG | 0.219315 | 1.3:-59059742 | MS.gene44142:intron |
| CTCTTGGCGCCATCAGATTC+TGG | 0.252842 | 1.3:-59060081 | MS.gene44142:CDS |
| GCATCATAGTTGTTTACTTT+GGG | 0.258817 | 1.3:+59059789 | None:intergenic |
| TCCAGTTCCATACCTCCTTT+TGG | 0.282786 | 1.3:+59059493 | None:intergenic |
| TCACATTTATGACTTTATTC+AGG | 0.292438 | 1.3:-59059015 | MS.gene44142:CDS |
| GTGCAGTGGCCCCTGATCTT+CGG | 0.304764 | 1.3:-59060037 | MS.gene44142:CDS |
| GTTACTAAATTCAACAAAAC+TGG | 0.304863 | 1.3:-59059410 | MS.gene44142:CDS |
| CAAGAAAGATGTTCCAGGTT+TGG | 0.350912 | 1.3:-59059105 | MS.gene44142:CDS |
| GATGCATTTCATGCCAAGTA+TGG | 0.358360 | 1.3:-59059771 | MS.gene44142:CDS |
| TCACCGTAGCCCCGAAGATC+AGG | 0.368042 | 1.3:+59060026 | None:intergenic |
| CACAGAATAGTAGAAGTAAA+TGG | 0.369517 | 1.3:-59060179 | MS.gene44142:CDS |
| GTGTAGCTGGTCACTGATTC+CGG | 0.373779 | 1.3:+59059993 | None:intergenic |
| TTCAACAAAACTGGCTTCAC+TGG | 0.380968 | 1.3:-59059401 | MS.gene44142:CDS |
| TGCATCATAGTTGTTTACTT+TGG | 0.388996 | 1.3:+59059788 | None:intergenic |
| TCCCTGAGTTATGGTACTCT+TGG | 0.411714 | 1.3:-59060097 | MS.gene44142:CDS |
| ATAATAATCAAGATCTTCTT+CGG | 0.431491 | 1.3:+59059433 | None:intergenic |
| GTACCGGTAAAGTACATTAC+AGG | 0.434050 | 1.3:-59059188 | MS.gene44142:CDS |
| TGCACGGTTTCCCTGAGTTA+TGG | 0.436444 | 1.3:-59060106 | MS.gene44142:CDS |
| ATATGCAGGATATCTTATCT+TGG | 0.436998 | 1.3:-59059460 | MS.gene44142:CDS |
| GATAAGATATCCTGCATATC+CGG | 0.440590 | 1.3:+59059464 | None:intergenic |
| GCCCCTGATCTTCGGGGCTA+CGG | 0.442117 | 1.3:-59060029 | MS.gene44142:CDS |
| CCCAAAAGGAGGTATGGAAC+TGG | 0.443182 | 1.3:-59059494 | MS.gene44142:CDS |
| TCTCCTGTAATGTACTTTAC+CGG | 0.448119 | 1.3:+59059185 | None:intergenic |
| AAAATGCATGTTGGAGAGAA+AGG | 0.449845 | 1.3:-59060152 | MS.gene44142:CDS |
| ATCACCAACAAGGTGAAAAC+AGG | 0.453861 | 1.3:+59059971 | None:intergenic |
| TTTGGGGTTTCTTCCAAGGA+AGG | 0.460713 | 1.3:+59059806 | None:intergenic |
| TTACTTTGGGGTTTCTTCCA+AGG | 0.467534 | 1.3:+59059802 | None:intergenic |
| GGCCACTGCACGGTAACCCT+TGG | 0.471280 | 1.3:+59060049 | None:intergenic |
| GGTTTCAAGAAAGATGTTCC+AGG | 0.471931 | 1.3:-59059110 | MS.gene44142:CDS |
| GTTCCATTCCGACCCTTCCT+TGG | 0.472799 | 1.3:-59059819 | MS.gene44142:CDS |
| TGGATTCAATCCGGATATGC+AGG | 0.474601 | 1.3:-59059474 | MS.gene44142:CDS |
| TGTTCCAGGTTTGGAGGAAG+TGG | 0.476149 | 1.3:-59059096 | MS.gene44142:CDS |
| AAGGTGAAAACAGGTGTAGC+TGG | 0.497712 | 1.3:+59059980 | None:intergenic |
| TTTGGAGGAAGTGGTTGTGC+AGG | 0.503362 | 1.3:-59059087 | MS.gene44142:CDS |
| CATTACAGGAGATTGTGGTT+TGG | 0.505307 | 1.3:-59059174 | MS.gene44142:CDS |
| ATAATAGTCATCTCCATACT+TGG | 0.505750 | 1.3:+59059758 | None:intergenic |
| CTACGGTGAAACTGAAGCTC+CGG | 0.515024 | 1.3:-59060012 | MS.gene44142:CDS |
| GAGGAAGTGGTTGTGCAGGA+AGG | 0.517437 | 1.3:-59059083 | MS.gene44142:CDS |
| TTGGGGTTTCTTCCAAGGAA+GGG | 0.521536 | 1.3:+59059807 | None:intergenic |
| CGCCAAGAGTACCATAACTC+AGG | 0.523914 | 1.3:+59060095 | None:intergenic |
| CATCATAGTTGTTTACTTTG+GGG | 0.527231 | 1.3:+59059790 | None:intergenic |
| AACAAAACTGGCTTCACTGG+AGG | 0.529011 | 1.3:-59059398 | MS.gene44142:CDS |
| GATTCTGGATTTGAGCTCCA+AGG | 0.531726 | 1.3:-59060066 | MS.gene44142:CDS |
| AGGAAGTGGTTGTGCAGGAA+GGG | 0.538638 | 1.3:-59059082 | MS.gene44142:CDS |
| ACAACCACTTCCTCCAAACC+TGG | 0.541024 | 1.3:+59059092 | None:intergenic |
| CACCGTAGCCCCGAAGATCA+GGG | 0.541844 | 1.3:+59060027 | None:intergenic |
| CTTCCAAGGAAGGGTCGGAA+TGG | 0.543706 | 1.3:+59059816 | None:intergenic |
| CCAGTGGTGTTGATGTTGCA+CGG | 0.546061 | 1.3:-59060122 | MS.gene44142:CDS |
| GAAAGATGTTCCAGGTTTGG+AGG | 0.547019 | 1.3:-59059102 | MS.gene44142:CDS |
| AATGGCATTAAAATGCATGT+TGG | 0.547604 | 1.3:-59060161 | MS.gene44142:CDS |
| ATTCTGGATTTGAGCTCCAA+GGG | 0.550282 | 1.3:-59060065 | MS.gene44142:CDS |
| CCGTGCAACATCAACACCAC+TGG | 0.550819 | 1.3:+59060122 | None:intergenic |
| AAGTACATTACAGGAGATTG+TGG | 0.554055 | 1.3:-59059179 | MS.gene44142:CDS |
| ACATCACCATGGAGTGAAGT+AGG | 0.556604 | 1.3:-59059221 | MS.gene44142:CDS |
| TGGAACTCTAAGACAAACAT+AGG | 0.558054 | 1.3:+59059836 | None:intergenic |
| GGTTTCTTCCAAGGAAGGGT+CGG | 0.558393 | 1.3:+59059811 | None:intergenic |
| CTCCAAGGGTTACCGTGCAG+TGG | 0.559388 | 1.3:-59060051 | MS.gene44142:CDS |
| ATTGCACTCATTGACTCTCT+AGG | 0.560324 | 1.3:-59059945 | MS.gene44142:intron |
| ACAAAACTGGCTTCACTGGA+GGG | 0.561868 | 1.3:-59059397 | MS.gene44142:CDS |
| TTTGGGAAAATTGGAGGACC+GGG | 0.570933 | 1.3:+59059511 | None:intergenic |
| ATGGTTACTTTCCAGGAACT+GGG | 0.571538 | 1.3:-59059249 | MS.gene44142:intron |
| AGTAGGAGTGGTAAATGTAC+CGG | 0.572295 | 1.3:-59059204 | MS.gene44142:CDS |
| GTATGGAACTGGATTCAATC+CGG | 0.573575 | 1.3:-59059483 | MS.gene44142:CDS |
| ACCACTCCTACTTCACTCCA+TGG | 0.577429 | 1.3:+59059215 | None:intergenic |
| ATGATGACAACGAGGAAACC+CGG | 0.579962 | 1.3:-59059529 | MS.gene44142:intron |
| GAAGATCAGGGGCCACTGCA+CGG | 0.580274 | 1.3:+59060039 | None:intergenic |
| ATACACTACGCCGAGTATGA+AGG | 0.580910 | 1.3:-59059150 | MS.gene44142:CDS |
| AGCTCAAATCCAGAATCTGA+TGG | 0.613338 | 1.3:+59060072 | None:intergenic |
| GCCAAGAGTACCATAACTCA+GGG | 0.614710 | 1.3:+59060096 | None:intergenic |
| CATGTTGGAGAGAAAGGAGA+AGG | 0.616899 | 1.3:-59060146 | MS.gene44142:CDS |
| ACCGTAGCCCCGAAGATCAG+GGG | 0.621226 | 1.3:+59060028 | None:intergenic |
| GCAGTGGCCCCTGATCTTCG+GGG | 0.625803 | 1.3:-59060035 | MS.gene44142:CDS |
| ATGAAGGAATATATCCTCGA+TGG | 0.629060 | 1.3:-59059134 | MS.gene44142:CDS |
| AGGATATATTCCTTCATACT+CGG | 0.633804 | 1.3:+59059140 | None:intergenic |
| ACCATGGAGTGAAGTAGGAG+TGG | 0.635510 | 1.3:-59059216 | MS.gene44142:CDS |
| AAGGAATATATCCTCGATGG+TGG | 0.654767 | 1.3:-59059131 | MS.gene44142:CDS |
| AGAGAAAGGAGAAGGTCCAG+TGG | 0.656472 | 1.3:-59060138 | MS.gene44142:CDS |
| GTTCTGACCAGAAAGAGTCA+AGG | 0.676929 | 1.3:-59059859 | MS.gene44142:intron |
| GTGCAATGATATCACCAACA+AGG | 0.702915 | 1.3:+59059961 | None:intergenic |
| CTTTCTTGAAACCACCATCG+AGG | 0.706418 | 1.3:+59059120 | None:intergenic |
| ACTGGGAGCTAACATCACCA+TGG | 0.711994 | 1.3:-59059232 | MS.gene44142:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTAAATACAACAAAATTT+AGG | - | chr1.3:59059553-59059572 | MS.gene44142:intron | 15.0% |
| !! | ATAATAATCAAGATCTTCTT+CGG | + | chr1.3:59059771-59059790 | None:intergenic | 20.0% |
| !! | CTTTAGTATATATAAAGACA+TGG | - | chr1.3:59059508-59059527 | MS.gene44142:CDS | 20.0% |
| !!! | ACTTTATTGATAACATTGAT+AGG | - | chr1.3:59059590-59059609 | MS.gene44142:intron | 20.0% |
| ! | GTTACTAAATTCAACAAAAC+TGG | - | chr1.3:59059791-59059810 | MS.gene44142:CDS | 25.0% |
| ! | TCACATTTATGACTTTATTC+AGG | - | chr1.3:59060186-59060205 | MS.gene44142:CDS | 25.0% |
| AATGGCATTAAAATGCATGT+TGG | - | chr1.3:59059040-59059059 | MS.gene44142:CDS | 30.0% | |
| AGGATATATTCCTTCATACT+CGG | + | chr1.3:59060064-59060083 | None:intergenic | 30.0% | |
| ATAATAGTCATCTCCATACT+TGG | + | chr1.3:59059446-59059465 | None:intergenic | 30.0% | |
| ATATGCAGGATATCTTATCT+TGG | - | chr1.3:59059741-59059760 | MS.gene44142:intron | 30.0% | |
| CACAGAATAGTAGAAGTAAA+TGG | - | chr1.3:59059022-59059041 | MS.gene44142:CDS | 30.0% | |
| CATCATAGTTGTTTACTTTG+GGG | + | chr1.3:59059414-59059433 | None:intergenic | 30.0% | |
| CATCATGTTACGCAAAAAAT+AGG | + | chr1.3:59059658-59059677 | None:intergenic | 30.0% | |
| GCATCATAGTTGTTTACTTT+GGG | + | chr1.3:59059415-59059434 | None:intergenic | 30.0% | |
| TGCATCATAGTTGTTTACTT+TGG | + | chr1.3:59059416-59059435 | None:intergenic | 30.0% | |
| AAAATGCATGTTGGAGAGAA+AGG | - | chr1.3:59059049-59059068 | MS.gene44142:CDS | 35.0% | |
| AAGTACATTACAGGAGATTG+TGG | - | chr1.3:59060022-59060041 | MS.gene44142:CDS | 35.0% | |
| ATGAAGGAATATATCCTCGA+TGG | - | chr1.3:59060067-59060086 | MS.gene44142:CDS | 35.0% | |
| CATTATCAGCTAGTGAAAAG+AGG | + | chr1.3:59059935-59059954 | None:intergenic | 35.0% | |
| CTATTATGTGTGCAGATTTC+AGG | - | chr1.3:59059459-59059478 | MS.gene44142:CDS | 35.0% | |
| GATAAGATATCCTGCATATC+CGG | + | chr1.3:59059740-59059759 | None:intergenic | 35.0% | |
| TCTCCTGTAATGTACTTTAC+CGG | + | chr1.3:59060019-59060038 | None:intergenic | 35.0% | |
| TGATAACATTGATAGGAACC+TGG | - | chr1.3:59059597-59059616 | MS.gene44142:intron | 35.0% | |
| ! | AATTTTCCCAAAAGGAGGTA+TGG | - | chr1.3:59059701-59059720 | MS.gene44142:intron | 35.0% |
| ! | CTCTTTTCACTAGCTGATAA+TGG | - | chr1.3:59059933-59059952 | MS.gene44142:intron | 35.0% |
| !! | ATACCTCCTTTTGGGAAAAT+TGG | + | chr1.3:59059702-59059721 | None:intergenic | 35.0% |
| !! | TGGAACTCTAAGACAAACAT+AGG | + | chr1.3:59059368-59059387 | None:intergenic | 35.0% |
| AAGGAATATATCCTCGATGG+TGG | - | chr1.3:59060070-59060089 | MS.gene44142:CDS | 40.0% | |
| AGCTCAAATCCAGAATCTGA+TGG | + | chr1.3:59059132-59059151 | None:intergenic | 40.0% | |
| AGTAGGAGTGGTAAATGTAC+CGG | - | chr1.3:59059997-59060016 | MS.gene44142:CDS | 40.0% | |
| ATCACCAACAAGGTGAAAAC+AGG | + | chr1.3:59059233-59059252 | None:intergenic | 40.0% | |
| ATTCTGGATTTGAGCTCCAA+GGG | - | chr1.3:59059136-59059155 | MS.gene44142:CDS | 40.0% | |
| CAAGAAAGATGTTCCAGGTT+TGG | - | chr1.3:59060096-59060115 | MS.gene44142:CDS | 40.0% | |
| CATTACAGGAGATTGTGGTT+TGG | - | chr1.3:59060027-59060046 | MS.gene44142:CDS | 40.0% | |
| GATGCATTTCATGCCAAGTA+TGG | - | chr1.3:59059430-59059449 | MS.gene44142:CDS | 40.0% | |
| GGTTTCAAGAAAGATGTTCC+AGG | - | chr1.3:59060091-59060110 | MS.gene44142:CDS | 40.0% | |
| GTATGGAACTGGATTCAATC+CGG | - | chr1.3:59059718-59059737 | MS.gene44142:intron | 40.0% | |
| GTGCAATGATATCACCAACA+AGG | + | chr1.3:59059243-59059262 | None:intergenic | 40.0% | |
| ! | AATGGTTACTTTCCAGGAAC+TGG | - | chr1.3:59059951-59059970 | MS.gene44142:CDS | 40.0% |
| ! | ATGGTTACTTTCCAGGAACT+GGG | - | chr1.3:59059952-59059971 | MS.gene44142:CDS | 40.0% |
| ! | GTACCGGTAAAGTACATTAC+AGG | - | chr1.3:59060013-59060032 | MS.gene44142:CDS | 40.0% |
| ! | TACACCTGTTTTCACCTTGT+TGG | - | chr1.3:59059226-59059245 | MS.gene44142:CDS | 40.0% |
| ! | TTCAACAAAACTGGCTTCAC+TGG | - | chr1.3:59059800-59059819 | MS.gene44142:CDS | 40.0% |
| !! | ATTGCACTCATTGACTCTCT+AGG | - | chr1.3:59059256-59059275 | MS.gene44142:intron | 40.0% |
| !! | GCTGATAATGGTTACTTTCC+AGG | - | chr1.3:59059945-59059964 | MS.gene44142:intron | 40.0% |
| !! | TTACTTTGGGGTTTCTTCCA+AGG | + | chr1.3:59059402-59059421 | None:intergenic | 40.0% |
| !! | TTTTGGGAAAATTGGAGGAC+CGG | + | chr1.3:59059694-59059713 | None:intergenic | 40.0% |
| AACACCTACTCCAGCCAATT+CGG | + | chr1.3:59059634-59059653 | None:intergenic | 45.0% | |
| AAGGTGAAAACAGGTGTAGC+TGG | + | chr1.3:59059224-59059243 | None:intergenic | 45.0% | |
| ACATAGGCCTTGACTCTTTC+TGG | + | chr1.3:59059352-59059371 | None:intergenic | 45.0% | |
| ACATCACCATGGAGTGAAGT+AGG | - | chr1.3:59059980-59059999 | MS.gene44142:CDS | 45.0% | |
| ATACACTACGCCGAGTATGA+AGG | - | chr1.3:59060051-59060070 | MS.gene44142:CDS | 45.0% | |
| ATGATGACAACGAGGAAACC+CGG | - | chr1.3:59059672-59059691 | MS.gene44142:intron | 45.0% | |
| CATGTTGGAGAGAAAGGAGA+AGG | - | chr1.3:59059055-59059074 | MS.gene44142:CDS | 45.0% | |
| CTTTCTTGAAACCACCATCG+AGG | + | chr1.3:59060084-59060103 | None:intergenic | 45.0% | |
| GAAAGATGTTCCAGGTTTGG+AGG | - | chr1.3:59060099-59060118 | MS.gene44142:CDS | 45.0% | |
| GATTCTGGATTTGAGCTCCA+AGG | - | chr1.3:59059135-59059154 | MS.gene44142:CDS | 45.0% | |
| GTACCTTGTCGGACATGATT+GGG | - | chr1.3:59059291-59059310 | MS.gene44142:intron | 45.0% | |
| GTGGACAAAGTGTACCTTGT+CGG | - | chr1.3:59059280-59059299 | MS.gene44142:intron | 45.0% | |
| GTTCTGACCAGAAAGAGTCA+AGG | - | chr1.3:59059342-59059361 | MS.gene44142:intron | 45.0% | |
| TACCTTGTCGGACATGATTG+GGG | - | chr1.3:59059292-59059311 | MS.gene44142:intron | 45.0% | |
| TCCCTGAGTTATGGTACTCT+TGG | - | chr1.3:59059104-59059123 | MS.gene44142:CDS | 45.0% | |
| TGCGTAACATGATGACAACG+AGG | - | chr1.3:59059664-59059683 | MS.gene44142:intron | 45.0% | |
| TGGATTCAATCCGGATATGC+AGG | - | chr1.3:59059727-59059746 | MS.gene44142:intron | 45.0% | |
| TGTACCTTGTCGGACATGAT+TGG | - | chr1.3:59059290-59059309 | MS.gene44142:intron | 45.0% | |
| TTGGGGTTTCTTCCAAGGAA+GGG | + | chr1.3:59059397-59059416 | None:intergenic | 45.0% | |
| TTTGGGAAAATTGGAGGACC+GGG | + | chr1.3:59059693-59059712 | None:intergenic | 45.0% | |
| ! | AACAAAACTGGCTTCACTGG+AGG | - | chr1.3:59059803-59059822 | MS.gene44142:CDS | 45.0% |
| ! | ACAAAACTGGCTTCACTGGA+GGG | - | chr1.3:59059804-59059823 | MS.gene44142:CDS | 45.0% |
| ! | CCAGTTCCATACCTCCTTTT+GGG | + | chr1.3:59059710-59059729 | None:intergenic | 45.0% |
| ! | CCTCCAATTTTCCCAAAAGG+AGG | - | chr1.3:59059696-59059715 | MS.gene44142:intron | 45.0% |
| ! | GGTCCTCCAATTTTCCCAAA+AGG | - | chr1.3:59059693-59059712 | MS.gene44142:intron | 45.0% |
| ! | TCCAGTTCCATACCTCCTTT+TGG | + | chr1.3:59059711-59059730 | None:intergenic | 45.0% |
| ! | TTTGGGGTTTCTTCCAAGGA+AGG | + | chr1.3:59059398-59059417 | None:intergenic | 45.0% |
| !! | ACTCATTGACTCTCTAGGTG+TGG | - | chr1.3:59059261-59059280 | MS.gene44142:intron | 45.0% |
| !! | CCTCCTTTTGGGAAAATTGG+AGG | + | chr1.3:59059699-59059718 | None:intergenic | 45.0% |
| !! | GCCAAGAGTACCATAACTCA+GGG | + | chr1.3:59059108-59059127 | None:intergenic | 45.0% |
| !! | TGATGTCTTGTGCTGCTTCT+TGG | + | chr1.3:59060162-59060181 | None:intergenic | 45.0% |
| !! | CAAAATTTATAAAAATAAAA+AGG | - | chr1.3:59059887-59059906 | MS.gene44142:intron | 5.0% |
| !!! | CTTTTTATTTTTATAAATTT+TGG | + | chr1.3:59059889-59059908 | None:intergenic | 5.0% |
| ACAACCACTTCCTCCAAACC+TGG | + | chr1.3:59060112-59060131 | None:intergenic | 50.0% | |
| ACCACTCCTACTTCACTCCA+TGG | + | chr1.3:59059989-59060008 | None:intergenic | 50.0% | |
| ACCATGGAGTGAAGTAGGAG+TGG | - | chr1.3:59059985-59060004 | MS.gene44142:CDS | 50.0% | |
| ACTGGGAGCTAACATCACCA+TGG | - | chr1.3:59059969-59059988 | MS.gene44142:CDS | 50.0% | |
| AGAGAAAGGAGAAGGTCCAG+TGG | - | chr1.3:59059063-59059082 | MS.gene44142:CDS | 50.0% | |
| AGGAAGTGGTTGTGCAGGAA+GGG | - | chr1.3:59060119-59060138 | MS.gene44142:CDS | 50.0% | |
| CATGATTGGGGTGCGATCAT+CGG | - | chr1.3:59059304-59059323 | MS.gene44142:intron | 50.0% | |
| CTACGGTGAAACTGAAGCTC+CGG | - | chr1.3:59059189-59059208 | MS.gene44142:CDS | 50.0% | |
| GGTTTCTTCCAAGGAAGGGT+CGG | + | chr1.3:59059393-59059412 | None:intergenic | 50.0% | |
| TACTCCAGCCAATTCGGCTT+CGG | + | chr1.3:59059628-59059647 | None:intergenic | 50.0% | |
| TGATGTTAGCTCCCAGTTCC+TGG | + | chr1.3:59059966-59059985 | None:intergenic | 50.0% | |
| TGCACGGTTTCCCTGAGTTA+TGG | - | chr1.3:59059095-59059114 | MS.gene44142:CDS | 50.0% | |
| TGGAAAAGCCGAAGCCGAAT+TGG | - | chr1.3:59059617-59059636 | MS.gene44142:intron | 50.0% | |
| TGTTCCAGGTTTGGAGGAAG+TGG | - | chr1.3:59060105-59060124 | MS.gene44142:CDS | 50.0% | |
| TTTGGAGGAAGTGGTTGTGC+AGG | - | chr1.3:59060114-59060133 | MS.gene44142:CDS | 50.0% | |
| ! | AATTCGGCTTCGGCTTTTCC+AGG | + | chr1.3:59059618-59059637 | None:intergenic | 50.0% |
| ! | CCCAAAAGGAGGTATGGAAC+TGG | - | chr1.3:59059707-59059726 | MS.gene44142:intron | 50.0% |
| !! | CCAGTGGTGTTGATGTTGCA+CGG | - | chr1.3:59059079-59059098 | MS.gene44142:CDS | 50.0% |
| !! | CGCCAAGAGTACCATAACTC+AGG | + | chr1.3:59059109-59059128 | None:intergenic | 50.0% |
| !! | GTGTAGCTGGTCACTGATTC+CGG | + | chr1.3:59059211-59059230 | None:intergenic | 50.0% |
| AAAGCCGAAGCCGAATTGGC+TGG | - | chr1.3:59059621-59059640 | MS.gene44142:intron | 55.0% | |
| ATTGGGGTGCGATCATCGGT+TGG | - | chr1.3:59059308-59059327 | MS.gene44142:intron | 55.0% | |
| CACCCCAATCATGTCCGACA+AGG | + | chr1.3:59059297-59059316 | None:intergenic | 55.0% | |
| CCGTGCAACATCAACACCAC+TGG | + | chr1.3:59059082-59059101 | None:intergenic | 55.0% | |
| CTCTTGGCGCCATCAGATTC+TGG | - | chr1.3:59059120-59059139 | MS.gene44142:CDS | 55.0% | |
| CTTCCAAGGAAGGGTCGGAA+TGG | + | chr1.3:59059388-59059407 | None:intergenic | 55.0% | |
| GAAGCCGAATTGGCTGGAGT+AGG | - | chr1.3:59059627-59059646 | MS.gene44142:intron | 55.0% | |
| GAGGAAGTGGTTGTGCAGGA+AGG | - | chr1.3:59060118-59060137 | MS.gene44142:CDS | 55.0% | |
| GTTCCATTCCGACCCTTCCT+TGG | - | chr1.3:59059382-59059401 | MS.gene44142:CDS | 55.0% | |
| ACCGTAGCCCCGAAGATCAG+GGG | + | chr1.3:59059176-59059195 | None:intergenic | 60.0% | |
| CACCGTAGCCCCGAAGATCA+GGG | + | chr1.3:59059177-59059196 | None:intergenic | 60.0% | |
| CTCCAAGGGTTACCGTGCAG+TGG | - | chr1.3:59059150-59059169 | MS.gene44142:CDS | 60.0% | |
| GAAGATCAGGGGCCACTGCA+CGG | + | chr1.3:59059165-59059184 | None:intergenic | 60.0% | |
| GTGCAGTGGCCCCTGATCTT+CGG | - | chr1.3:59059164-59059183 | MS.gene44142:CDS | 60.0% | |
| TCACCGTAGCCCCGAAGATC+AGG | + | chr1.3:59059178-59059197 | None:intergenic | 60.0% | |
| TGCAGTGGCCCCTGATCTTC+GGG | - | chr1.3:59059165-59059184 | MS.gene44142:CDS | 60.0% | |
| GCAGTGGCCCCTGATCTTCG+GGG | - | chr1.3:59059166-59059185 | MS.gene44142:CDS | 65.0% | |
| GCCCCTGATCTTCGGGGCTA+CGG | - | chr1.3:59059172-59059191 | MS.gene44142:CDS | 65.0% | |
| GGCCACTGCACGGTAACCCT+TGG | + | chr1.3:59059155-59059174 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 59059007 | 59060216 | 59059007 | ID=MS.gene44142 |
| chr1.3 | mRNA | 59059007 | 59060216 | 59059007 | ID=MS.gene44142.t1;Parent=MS.gene44142 |
| chr1.3 | exon | 59059946 | 59060216 | 59059946 | ID=MS.gene44142.t1.exon1;Parent=MS.gene44142.t1 |
| chr1.3 | CDS | 59059946 | 59060216 | 59059946 | ID=cds.MS.gene44142.t1;Parent=MS.gene44142.t1 |
| chr1.3 | exon | 59059743 | 59059870 | 59059743 | ID=MS.gene44142.t1.exon2;Parent=MS.gene44142.t1 |
| chr1.3 | CDS | 59059743 | 59059870 | 59059743 | ID=cds.MS.gene44142.t1;Parent=MS.gene44142.t1 |
| chr1.3 | exon | 59059371 | 59059537 | 59059371 | ID=MS.gene44142.t1.exon3;Parent=MS.gene44142.t1 |
| chr1.3 | CDS | 59059371 | 59059537 | 59059371 | ID=cds.MS.gene44142.t1;Parent=MS.gene44142.t1 |
| chr1.3 | exon | 59059007 | 59059256 | 59059007 | ID=MS.gene44142.t1.exon4;Parent=MS.gene44142.t1 |
| chr1.3 | CDS | 59059007 | 59059256 | 59059007 | ID=cds.MS.gene44142.t1;Parent=MS.gene44142.t1 |
| Gene Sequence |
| Protein sequence |
