Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45199.t1 | XP_013447550.1 | 99.3 | 139 | 1 | 0 | 1 | 139 | 33 | 171 | 4.10E-65 | 257.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45199.t1 | Q9LVP9 | 71.9 | 139 | 39 | 0 | 1 | 139 | 33 | 171 | 1.2e-49 | 197.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45199.t1 | B7FGM6 | 99.3 | 139 | 1 | 0 | 1 | 139 | 33 | 171 | 2.9e-65 | 257.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050750 | MS.gene45199 | -0.804605 | 1.99E-49 | -1.69E-46 |
| MS.gene050787 | MS.gene45199 | -0.80192 | 7.17E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene45199 | -0.816644 | 4.97E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene45199 | 0.802154 | 6.42E-49 | -1.69E-46 |
| MS.gene052358 | MS.gene45199 | 0.801979 | 6.97E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene45199 | 0.8134 | 2.61E-51 | -1.69E-46 |
| MS.gene054405 | MS.gene45199 | -0.81341 | 2.60E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene45199 | -0.810778 | 9.73E-51 | -1.69E-46 |
| MS.gene057414 | MS.gene45199 | -0.805109 | 1.56E-49 | -1.69E-46 |
| MS.gene05954 | MS.gene45199 | -0.828808 | 7.32E-55 | -1.69E-46 |
| MS.gene059849 | MS.gene45199 | 0.832107 | 1.14E-55 | -1.69E-46 |
| MS.gene059896 | MS.gene45199 | 0.825134 | 5.53E-54 | -1.69E-46 |
| MS.gene060634 | MS.gene45199 | 0.870019 | 2.00E-66 | -1.69E-46 |
| MS.gene061040 | MS.gene45199 | 0.837007 | 6.70E-57 | -1.69E-46 |
| MS.gene061114 | MS.gene45199 | 0.830259 | 3.25E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45199.t1 | MTR_7g011570 | 99.281 | 139 | 1 | 0 | 1 | 139 | 33 | 171 | 2.44e-97 | 279 |
| MS.gene45199.t1 | MTR_7g011570 | 99.281 | 139 | 1 | 0 | 1 | 139 | 115 | 253 | 1.10e-95 | 278 |
| MS.gene45199.t1 | MTR_6g012860 | 84.892 | 139 | 21 | 0 | 1 | 139 | 33 | 171 | 1.57e-83 | 244 |
| MS.gene45199.t1 | MTR_3g037380 | 66.423 | 137 | 46 | 0 | 1 | 137 | 33 | 169 | 2.17e-61 | 188 |
| MS.gene45199.t1 | MTR_5g042530 | 65.693 | 137 | 47 | 0 | 1 | 137 | 34 | 170 | 3.04e-58 | 180 |
| MS.gene45199.t1 | MTR_3g037380 | 66.957 | 115 | 38 | 0 | 23 | 137 | 1 | 115 | 1.25e-50 | 159 |
| MS.gene45199.t1 | MTR_5g042530 | 67.826 | 115 | 37 | 0 | 23 | 137 | 1 | 115 | 3.46e-49 | 155 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45199.t1 | AT3G29100 | 71.942 | 139 | 39 | 0 | 1 | 139 | 33 | 171 | 1.33e-70 | 211 |
| MS.gene45199.t1 | AT5G39510 | 69.065 | 139 | 43 | 0 | 1 | 139 | 33 | 171 | 1.06e-66 | 201 |
| MS.gene45199.t1 | AT1G26670 | 65.217 | 138 | 48 | 0 | 1 | 138 | 34 | 171 | 1.47e-59 | 183 |
| MS.gene45199.t1 | AT3G29100 | 71.667 | 120 | 34 | 0 | 20 | 139 | 26 | 145 | 4.08e-59 | 181 |
| MS.gene45199.t1 | AT3G29100 | 72.650 | 117 | 32 | 0 | 23 | 139 | 1 | 117 | 7.76e-58 | 177 |
| MS.gene45199.t1 | AT3G29100 | 72.650 | 117 | 32 | 0 | 23 | 139 | 1 | 117 | 7.76e-58 | 177 |
| MS.gene45199.t1 | AT3G29100 | 72.650 | 117 | 32 | 0 | 23 | 139 | 1 | 117 | 7.76e-58 | 177 |
| MS.gene45199.t1 | AT5G39630 | 46.617 | 133 | 67 | 1 | 1 | 133 | 33 | 161 | 8.03e-30 | 107 |
Find 31 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATTTGTAGATTCGGAAAA+TGG | 0.148334 | 7.3:+86204249 | MS.gene45199:intron |
| AAGTTTGCAGCCAAACATTA+AGG | 0.247833 | 7.3:+86204285 | MS.gene45199:CDS |
| GCAAAATATTTCAGATATAA+AGG | 0.306073 | 7.3:+86204119 | MS.gene45199:CDS |
| CAAATCTAGTGACAGAATTA+AGG | 0.325551 | 7.3:+86206045 | MS.gene45199:CDS |
| CGGGATATGTTGTTGGAATC+AGG | 0.359202 | 7.3:+86204406 | MS.gene45199:CDS |
| TGTTGGAAACGGAAGAGCTT+GGG | 0.371438 | 7.3:+86206083 | MS.gene45199:CDS |
| GAACTTAAGAAACTTGTATC+TGG | 0.383535 | 7.3:+86204364 | MS.gene45199:CDS |
| TGTACTTCTTGCTAAGTTGC+GGG | 0.406118 | 7.3:+86204309 | MS.gene45199:CDS |
| AGAAGTACACCCTTAATGTT+TGG | 0.429162 | 7.3:-86204295 | None:intergenic |
| CTCTGCCCGGGATATGTTGT+TGG | 0.438296 | 7.3:+86204399 | MS.gene45199:CDS |
| AGTTTGCAGCCAAACATTAA+GGG | 0.439151 | 7.3:+86204286 | MS.gene45199:CDS |
| AATCGATGAGGCAGAAGCTT+TGG | 0.451935 | 7.3:+86204146 | MS.gene45199:CDS |
| GCTGAGAATGCAAATCTTGA+AGG | 0.459483 | 7.3:-86206114 | None:intergenic |
| AATATTTCAGATATAAAGGC+TGG | 0.486099 | 7.3:+86204123 | MS.gene45199:CDS |
| GTGACAGAATTAAGGACAGC+AGG | 0.496887 | 7.3:+86206053 | MS.gene45199:CDS |
| GTAACATGAACCCCTCTGCC+CGG | 0.498653 | 7.3:+86204386 | MS.gene45199:CDS |
| CTGATTCCAACAACATATCC+CGG | 0.518713 | 7.3:-86204405 | None:intergenic |
| GTGTACTTCTTGCTAAGTTG+CGG | 0.523629 | 7.3:+86204308 | MS.gene45199:CDS |
| GGACAGCAGGAGAACAATGT+TGG | 0.535680 | 7.3:+86206066 | MS.gene45199:CDS |
| CAGGAGAACAATGTTGGAAA+CGG | 0.537387 | 7.3:+86206072 | MS.gene45199:CDS |
| CAACAACATATCCCGGGCAG+AGG | 0.549166 | 7.3:-86204398 | None:intergenic |
| TAACATGAACCCCTCTGCCC+GGG | 0.559609 | 7.3:+86204387 | MS.gene45199:CDS |
| ATGTTGGAAACGGAAGAGCT+TGG | 0.571336 | 7.3:+86206082 | MS.gene45199:CDS |
| AACAACATATCCCGGGCAGA+GGG | 0.578673 | 7.3:-86204397 | None:intergenic |
| GTTGGAAACGGAAGAGCTTG+GGG | 0.586866 | 7.3:+86206084 | MS.gene45199:CDS |
| GATTCGGAAAATGGATCTTG+AGG | 0.594367 | 7.3:+86204258 | MS.gene45199:intron |
| AGGCATGGCAGATGCTATGA+CGG | 0.603594 | 7.3:+86204426 | MS.gene45199:CDS |
| TGATTCCAACAACATATCCC+GGG | 0.605197 | 7.3:-86204404 | None:intergenic |
| TATGTTGTTGGAATCAGGCA+TGG | 0.631211 | 7.3:+86204411 | MS.gene45199:CDS |
| TATAAAGGCTGGAATCGATG+AGG | 0.704491 | 7.3:+86204134 | MS.gene45199:CDS |
| ACAACATATCCCGGGCAGAG+GGG | 0.706468 | 7.3:-86204396 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAATAATAATAA+GGG | + | chr7.3:86204978-86204997 | MS.gene45199:intron | 0.0% |
| !! | ATATATATATATATATATAT+AGG | + | chr7.3:86204629-86204648 | MS.gene45199:intron | 0.0% |
| !! | TAATAATAATAATAATAATA+AGG | + | chr7.3:86204980-86204999 | MS.gene45199:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | + | chr7.3:86204628-86204647 | MS.gene45199:intron | 0.0% |
| !! | AAAACATTTATTGAAATATA+AGG | - | chr7.3:86205217-86205236 | None:intergenic | 10.0% |
| !! | AACTTATTATTATTATGATT+AGG | - | chr7.3:86205484-86205503 | None:intergenic | 10.0% |
| !! | AATCATAATAATAATAAGTT+AGG | + | chr7.3:86205484-86205503 | MS.gene45199:intron | 10.0% |
| !! | ACTTATTATTATTATGATTA+GGG | - | chr7.3:86205483-86205502 | None:intergenic | 10.0% |
| !! | ATATTTAACCTTAAAATAAT+TGG | - | chr7.3:86205155-86205174 | None:intergenic | 10.0% |
| !! | TATTTAACCTTAAAATAATT+GGG | - | chr7.3:86205154-86205173 | None:intergenic | 10.0% |
| !! | AAAAACATTAATGAAATGTA+GGG | - | chr7.3:86205046-86205065 | None:intergenic | 15.0% |
| !! | AAAAACATTTAATGAAATGT+AGG | + | chr7.3:86205408-86205427 | MS.gene45199:intron | 15.0% |
| !! | AAAACATTTAATGAAATGTA+GGG | + | chr7.3:86205409-86205428 | MS.gene45199:intron | 15.0% |
| !! | ATATTTAACCCTAAAATAAT+TGG | + | chr7.3:86205300-86205319 | MS.gene45199:intron | 15.0% |
| !! | TAAAAACATTAATGAAATGT+AGG | - | chr7.3:86205047-86205066 | None:intergenic | 15.0% |
| !! | TATTTAACCCTAAAATAATT+GGG | + | chr7.3:86205301-86205320 | MS.gene45199:intron | 15.0% |
| !! | TTAAAATCCCTAAAATAATA+AGG | + | chr7.3:86205236-86205255 | MS.gene45199:intron | 15.0% |
| !!! | TTTAAGGTTAAATATGTTTT+TGG | + | chr7.3:86205160-86205179 | MS.gene45199:intron | 15.0% |
| !! | AAGTTAATAAATACACCTTA+AGG | - | chr7.3:86204888-86204907 | None:intergenic | 20.0% |
| !! | AGAAATATAAACTTTCTGTA+CGG | + | chr7.3:86205597-86205616 | MS.gene45199:intron | 20.0% |
| !! | CTTTCAAAACAAAATGAAAA+AGG | - | chr7.3:86204183-86204202 | None:intergenic | 20.0% |
| !! | GCAAAATATTTCAGATATAA+AGG | + | chr7.3:86204119-86204138 | MS.gene45199:CDS | 20.0% |
| !! | TTAAAACATCAGGAATTAAA+TGG | - | chr7.3:86205872-86205891 | None:intergenic | 20.0% |
| !!! | AGAATAGTCCTTATTATTTT+AGG | - | chr7.3:86205247-86205266 | None:intergenic | 20.0% |
| !!! | ATTTGGTTGAATTTTTACTA+TGG | + | chr7.3:86205547-86205566 | MS.gene45199:intron | 20.0% |
| !!! | CAGAAAGTTTATATTTCTTT+TGG | - | chr7.3:86205595-86205614 | None:intergenic | 20.0% |
| !!! | CTATATAATTTGTGAAGATT+TGG | + | chr7.3:86205530-86205549 | MS.gene45199:intron | 20.0% |
| !!! | CTCAATTAATTTAAAACATC+AGG | - | chr7.3:86205882-86205901 | None:intergenic | 20.0% |
| !!! | GAATAGTCCTTATTATTTTA+GGG | - | chr7.3:86205246-86205265 | None:intergenic | 20.0% |
| !!! | TCTGAATATTCATTTTTCTT+GGG | + | chr7.3:86205919-86205938 | MS.gene45199:intron | 20.0% |
| !!! | TTCTGAATATTCATTTTTCT+TGG | + | chr7.3:86205918-86205937 | MS.gene45199:intron | 20.0% |
| ! | AATATTTCAGATATAAAGGC+TGG | + | chr7.3:86204123-86204142 | MS.gene45199:CDS | 25.0% |
| ! | GAAATATAAACTTTCTGTAC+GGG | + | chr7.3:86205598-86205617 | MS.gene45199:intron | 25.0% |
| ! | TAAGCAATAGGAATCAAATT+TGG | - | chr7.3:86205954-86205973 | None:intergenic | 25.0% |
| ! | TCAAAATCACGCAAAATATA+GGG | - | chr7.3:86205187-86205206 | None:intergenic | 25.0% |
| ! | TTCAAAATCACGCAAAATAT+AGG | - | chr7.3:86205188-86205207 | None:intergenic | 25.0% |
| !! | TTTAGGGTTAAATATGTTTG+TGG | - | chr7.3:86205295-86205314 | None:intergenic | 25.0% |
| !!! | ACATTTTAGAACAGTAGTTA+TGG | + | chr7.3:86205654-86205673 | MS.gene45199:intron | 25.0% |
| ACCTTCTAACAAAAACAAGT+GGG | - | chr7.3:86204847-86204866 | None:intergenic | 30.0% | |
| ATGTAGGGACTATTATTCAA+AGG | - | chr7.3:86205031-86205050 | None:intergenic | 30.0% | |
| CAAATCTAGTGACAGAATTA+AGG | + | chr7.3:86206045-86206064 | MS.gene45199:CDS | 30.0% | |
| CAATAGGAATCAAATTTGGT+GGG | - | chr7.3:86205950-86205969 | None:intergenic | 30.0% | |
| CATGGTTTCACAGAATATAA+AGG | - | chr7.3:86204547-86204566 | None:intergenic | 30.0% | |
| CCTTCTTTCTTCTGTATTAT+GGG | + | chr7.3:86204206-86204225 | MS.gene45199:intron | 30.0% | |
| GAACTTAAGAAACTTGTATC+TGG | + | chr7.3:86204364-86204383 | MS.gene45199:CDS | 30.0% | |
| GCAAGTGAATAACTAAAAAG+TGG | - | chr7.3:86204756-86204775 | None:intergenic | 30.0% | |
| TATATTCTGTGAAACCATGA+TGG | + | chr7.3:86204548-86204567 | MS.gene45199:intron | 30.0% | |
| TCCTTCTTTCTTCTGTATTA+TGG | + | chr7.3:86204205-86204224 | MS.gene45199:intron | 30.0% | |
| TGTAGGGACTATTATTCAAA+GGG | - | chr7.3:86205030-86205049 | None:intergenic | 30.0% | |
| TTATAGCAACATACACCTTA+AGG | + | chr7.3:86204870-86204889 | MS.gene45199:intron | 30.0% | |
| TTCACAGAATATAAAGGAGA+TGG | - | chr7.3:86204541-86204560 | None:intergenic | 30.0% | |
| ! | AAATGCCATTTGCAACATTA+GGG | - | chr7.3:86205846-86205865 | None:intergenic | 30.0% |
| ! | AATAGGAATCAAATTTGGTG+GGG | - | chr7.3:86205949-86205968 | None:intergenic | 30.0% |
| ! | ACTCCTTCTAAAAAGTAAGT+GGG | + | chr7.3:86204782-86204801 | MS.gene45199:intron | 30.0% |
| ! | TACTCCTTCTAAAAAGTAAG+TGG | + | chr7.3:86204781-86204800 | MS.gene45199:intron | 30.0% |
| ! | TGACTTGAAACTTTAGAGAT+TGG | - | chr7.3:86204593-86204612 | None:intergenic | 30.0% |
| !! | ACACTCTTTGATGATGTTAA+AGG | + | chr7.3:86204468-86204487 | MS.gene45199:intron | 30.0% |
| !! | AGCACGACTAATTTTGATAA+CGG | - | chr7.3:86205089-86205108 | None:intergenic | 30.0% |
| !! | TGCTTATCGATTTGTAGATT+CGG | + | chr7.3:86204242-86204261 | MS.gene45199:intron | 30.0% |
| AAGTGGTTAAATACACCCTA+AGG | - | chr7.3:86204739-86204758 | None:intergenic | 35.0% | |
| AAGTTTGCAGCCAAACATTA+AGG | + | chr7.3:86204285-86204304 | MS.gene45199:CDS | 35.0% | |
| ACAAAATGAAAAAGGCGAAG+AGG | - | chr7.3:86204175-86204194 | None:intergenic | 35.0% | |
| ACAGAATATAAAGGAGATGG+AGG | - | chr7.3:86204538-86204557 | None:intergenic | 35.0% | |
| ACCAATTCTTTGCGTTATCA+TGG | - | chr7.3:86204515-86204534 | None:intergenic | 35.0% | |
| ACTCCCACATAAAAACTAGT+GGG | - | chr7.3:86204699-86204718 | None:intergenic | 35.0% | |
| AGTTTGCAGCCAAACATTAA+GGG | + | chr7.3:86204286-86204305 | MS.gene45199:CDS | 35.0% | |
| ATAAGTTAGGAAGACAGTAG+AGG | + | chr7.3:86205497-86205516 | MS.gene45199:intron | 35.0% | |
| ATTGCTAATCTGGCAAAAAC+AGG | + | chr7.3:86205973-86205992 | MS.gene45199:intron | 35.0% | |
| CAAAATGAAAAAGGCGAAGA+GGG | - | chr7.3:86204174-86204193 | None:intergenic | 35.0% | |
| CAAAGTCACGCAAAAATGTA+GGG | + | chr7.3:86205268-86205287 | MS.gene45199:intron | 35.0% | |
| CACCTTCTAACAAAAACAAG+TGG | - | chr7.3:86204848-86204867 | None:intergenic | 35.0% | |
| CCAGATTAGCAATAAGCAAT+AGG | - | chr7.3:86205966-86205985 | None:intergenic | 35.0% | |
| CCCATAATACAGAAGAAAGA+AGG | - | chr7.3:86204209-86204228 | None:intergenic | 35.0% | |
| CCTATTGCTTATTGCTAATC+TGG | + | chr7.3:86205963-86205982 | MS.gene45199:intron | 35.0% | |
| CGATTTGTAGATTCGGAAAA+TGG | + | chr7.3:86204249-86204268 | MS.gene45199:intron | 35.0% | |
| CTCTAACGGAAATTCTGATT+TGG | + | chr7.3:86205116-86205135 | MS.gene45199:intron | 35.0% | |
| GCAATAGGAATCAAATTTGG+TGG | - | chr7.3:86205951-86205970 | None:intergenic | 35.0% | |
| GTAGGGACTATTATTCAAAG+GGG | - | chr7.3:86205029-86205048 | None:intergenic | 35.0% | |
| GTGTTCTAGCAAATCCTATA+GGG | - | chr7.3:86204823-86204842 | None:intergenic | 35.0% | |
| TCAAAGTCACGCAAAAATGT+AGG | + | chr7.3:86205267-86205286 | MS.gene45199:intron | 35.0% | |
| TCTCTTCAGACATTTCATGT+TGG | + | chr7.3:86205793-86205812 | MS.gene45199:intron | 35.0% | |
| TGGTCTCACATAACAATGAA+TGG | - | chr7.3:86204495-86204514 | None:intergenic | 35.0% | |
| TGTGTTCTAGCAAATCCTAT+AGG | - | chr7.3:86204824-86204843 | None:intergenic | 35.0% | |
| TGTTCTAGCAAATCCTATAG+GGG | - | chr7.3:86204822-86204841 | None:intergenic | 35.0% | |
| TTTAGCAAAGCTACACCTTA+GGG | + | chr7.3:86204721-86204740 | MS.gene45199:intron | 35.0% | |
| ! | ACCATGATAACGCAAAGAAT+TGG | + | chr7.3:86204511-86204530 | MS.gene45199:intron | 35.0% |
| ! | AGAAGTACACCCTTAATGTT+TGG | - | chr7.3:86204298-86204317 | None:intergenic | 35.0% |
| ! | GAAATGCCATTTGCAACATT+AGG | - | chr7.3:86205847-86205866 | None:intergenic | 35.0% |
| ! | TCGTGCTGTTAATTCTCTAA+CGG | + | chr7.3:86205102-86205121 | MS.gene45199:intron | 35.0% |
| ! | TTTTAGCAAAGCTACACCTT+AGG | + | chr7.3:86204720-86204739 | MS.gene45199:intron | 35.0% |
| !! | AATTCTGATTTGGCAGTTAG+TGG | + | chr7.3:86205126-86205145 | MS.gene45199:intron | 35.0% |
| !! | AGTGGGTCCCAATTATTTTA+AGG | + | chr7.3:86205144-86205163 | MS.gene45199:intron | 35.0% |
| !! | AGTGGGTCCCAATTATTTTA+GGG | - | chr7.3:86205163-86205144 | None:intergenic | 35.0% |
| !! | ATTCTGATTTGGCAGTTAGT+GGG | + | chr7.3:86205127-86205146 | MS.gene45199:intron | 35.0% |
| !! | GCACGACTAATTTTGATAAC+GGG | - | chr7.3:86205088-86205107 | None:intergenic | 35.0% |
| !! | TAGTGGGTCCCAATTATTTT+AGG | - | chr7.3:86205162-86205143 | None:intergenic | 35.0% |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr7.3:86204693-86204712 | MS.gene45199:intron | 35.0% |
| !!! | ACACCCACTTACTTTTTAGA+AGG | - | chr7.3:86204788-86204807 | None:intergenic | 35.0% |
| !!! | ACCCACTTGTTTTTGTTAGA+AGG | + | chr7.3:86204843-86204862 | MS.gene45199:intron | 35.0% |
| !!! | CACGACTAATTTTGATAACG+GGG | - | chr7.3:86205087-86205106 | None:intergenic | 35.0% |
| CACTCCCACATAAAAACTAG+TGG | - | chr7.3:86204700-86204719 | None:intergenic | 40.0% | |
| CAGGAGAACAATGTTGGAAA+CGG | + | chr7.3:86206072-86206091 | MS.gene45199:CDS | 40.0% | |
| CTGATTCCAACAACATATCC+CGG | - | chr7.3:86204408-86204427 | None:intergenic | 40.0% | |
| CTTCAGACATTTCATGTTGG+TGG | + | chr7.3:86205796-86205815 | MS.gene45199:intron | 40.0% | |
| GAGAACGGAGATAAAATGTG+AGG | + | chr7.3:86205380-86205399 | MS.gene45199:intron | 40.0% | |
| GATTCGGAAAATGGATCTTG+AGG | + | chr7.3:86204258-86204277 | MS.gene45199:intron | 40.0% | |
| GCATCCCGTTAGAGAATTAA+CGG | + | chr7.3:86205344-86205363 | MS.gene45199:intron | 40.0% | |
| GCTGAGAATGCAAATCTTGA+AGG | - | chr7.3:86206117-86206136 | None:intergenic | 40.0% | |
| GTAGGGACTATTCTTCAAAG+AGG | + | chr7.3:86205426-86205445 | MS.gene45199:intron | 40.0% | |
| GTGTACTTCTTGCTAAGTTG+CGG | + | chr7.3:86204308-86204327 | MS.gene45199:CDS | 40.0% | |
| TATAAAGGCTGGAATCGATG+AGG | + | chr7.3:86204134-86204153 | MS.gene45199:CDS | 40.0% | |
| TATGTTGTTGGAATCAGGCA+TGG | + | chr7.3:86204411-86204430 | MS.gene45199:CDS | 40.0% | |
| TGATTCCAACAACATATCCC+GGG | - | chr7.3:86204407-86204426 | None:intergenic | 40.0% | |
| TGTACTTCTTGCTAAGTTGC+GGG | + | chr7.3:86204309-86204328 | MS.gene45199:CDS | 40.0% | |
| TTGAGCCCTAATGTTGCAAA+TGG | + | chr7.3:86205838-86205857 | MS.gene45199:intron | 40.0% | |
| ! | AAATCCTATAGGGGTTTGCT+AGG | - | chr7.3:86204813-86204832 | None:intergenic | 40.0% |
| ! | TCAAAGAGGCGCAAAATGTA+AGG | + | chr7.3:86205440-86205459 | MS.gene45199:intron | 40.0% |
| !! | GATAACGGGGATAAAATGTG+AGG | - | chr7.3:86205074-86205093 | None:intergenic | 40.0% |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr7.3:86204692-86204711 | MS.gene45199:intron | 40.0% |
| AAACCATGATGGCTACGTAC+TGG | + | chr7.3:86204559-86204578 | MS.gene45199:intron | 45.0% | |
| AATCGATGAGGCAGAAGCTT+TGG | + | chr7.3:86204146-86204165 | MS.gene45199:CDS | 45.0% | |
| ATGCTGATGTGGCAGTTAGT+GGG | - | chr7.3:86205328-86205347 | None:intergenic | 45.0% | |
| ATGTTGGAAACGGAAGAGCT+TGG | + | chr7.3:86206082-86206101 | MS.gene45199:CDS | 45.0% | |
| CCCTGCCGTTAATTCTCTAA+CGG | - | chr7.3:86205352-86205371 | None:intergenic | 45.0% | |
| CCGTTAGAGAATTAACGGCA+GGG | + | chr7.3:86205349-86205368 | MS.gene45199:intron | 45.0% | |
| CCTGCCGTTAATTCTCTAAC+GGG | - | chr7.3:86205351-86205370 | None:intergenic | 45.0% | |
| CGGGATATGTTGTTGGAATC+AGG | + | chr7.3:86204406-86204425 | MS.gene45199:CDS | 45.0% | |
| GGCAGGGACTAATTTGAGAA+CGG | + | chr7.3:86205365-86205384 | MS.gene45199:intron | 45.0% | |
| GTATCCTAGCAAACCCCTAT+AGG | + | chr7.3:86204806-86204825 | MS.gene45199:intron | 45.0% | |
| GTGACAGAATTAAGGACAGC+AGG | + | chr7.3:86206053-86206072 | MS.gene45199:CDS | 45.0% | |
| TGTTGGAAACGGAAGAGCTT+GGG | + | chr7.3:86206083-86206102 | MS.gene45199:CDS | 45.0% | |
| !! | CATGTTGGTGGTGCACAAAA+TGG | + | chr7.3:86205808-86205827 | MS.gene45199:intron | 45.0% |
| !!! | TCTTTTGGTGTTTGCCTCAC+TGG | - | chr7.3:86205580-86205599 | None:intergenic | 45.0% |
| !! | ATATATATATATATATATGT+GGG | - | chr7.3:86204935-86204954 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+TGG | - | chr7.3:86204936-86204955 | None:intergenic | 5.0% |
| AACAACATATCCCGGGCAGA+GGG | - | chr7.3:86204400-86204419 | None:intergenic | 50.0% | |
| AAGCCAGTACGTAGCCATCA+TGG | - | chr7.3:86204565-86204584 | None:intergenic | 50.0% | |
| ACTATGGACTCCTTCCAGTG+AGG | + | chr7.3:86205563-86205582 | MS.gene45199:intron | 50.0% | |
| AGGCATGGCAGATGCTATGA+CGG | + | chr7.3:86204426-86204445 | MS.gene45199:CDS | 50.0% | |
| CCCGTTAGAGAATTAACGGC+AGG | + | chr7.3:86205348-86205367 | MS.gene45199:intron | 50.0% | |
| GATGCTGATGTGGCAGTTAG+TGG | - | chr7.3:86205329-86205348 | None:intergenic | 50.0% | |
| GGACAGCAGGAGAACAATGT+TGG | + | chr7.3:86206066-86206085 | MS.gene45199:CDS | 50.0% | |
| GTTGGAAACGGAAGAGCTTG+GGG | + | chr7.3:86206084-86206103 | MS.gene45199:CDS | 50.0% | |
| TCTCTAACGGGATGCTGATG+TGG | - | chr7.3:86205339-86205358 | None:intergenic | 50.0% | |
| ! | TTGGTGTTTGCCTCACTGGA+AGG | - | chr7.3:86205576-86205595 | None:intergenic | 50.0% |
| ACAACATATCCCGGGCAGAG+GGG | - | chr7.3:86204399-86204418 | None:intergenic | 55.0% | |
| CAACAACATATCCCGGGCAG+AGG | - | chr7.3:86204401-86204420 | None:intergenic | 55.0% | |
| CTCTGCCCGGGATATGTTGT+TGG | + | chr7.3:86204399-86204418 | MS.gene45199:CDS | 55.0% | |
| GTAACATGAACCCCTCTGCC+CGG | + | chr7.3:86204386-86204405 | MS.gene45199:CDS | 55.0% | |
| TAACATGAACCCCTCTGCCC+GGG | + | chr7.3:86204387-86204406 | MS.gene45199:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 86204111 | 86206165 | 86204111 | ID=MS.gene45199 |
| chr7.3 | mRNA | 86204111 | 86206165 | 86204111 | ID=MS.gene45199.t1;Parent=MS.gene45199 |
| chr7.3 | exon | 86204111 | 86204167 | 86204111 | ID=MS.gene45199.t1.exon1;Parent=MS.gene45199.t1 |
| chr7.3 | CDS | 86204111 | 86204167 | 86204111 | ID=cds.MS.gene45199.t1;Parent=MS.gene45199.t1 |
| chr7.3 | exon | 86204259 | 86204447 | 86204259 | ID=MS.gene45199.t1.exon2;Parent=MS.gene45199.t1 |
| chr7.3 | CDS | 86204259 | 86204447 | 86204259 | ID=cds.MS.gene45199.t1;Parent=MS.gene45199.t1 |
| chr7.3 | exon | 86205995 | 86206165 | 86205995 | ID=MS.gene45199.t1.exon3;Parent=MS.gene45199.t1 |
| chr7.3 | CDS | 86205995 | 86206165 | 86205995 | ID=cds.MS.gene45199.t1;Parent=MS.gene45199.t1 |
| Gene Sequence |
| Protein sequence |
