AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene061265


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene061265.t1 MTR_4g122180 93.651 63 4 0 1 63 1 63 2.52e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 162 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGTTCTGGTGGAGGCTT+TGG 0.168724 8.3:-6432150 MS.gene061265:CDS
GGTGGTAAAGGTGGTGGTTT+TGG 0.191403 8.3:-6432534 MS.gene061265:CDS
GAGGCGGTGCTGGCGGTGAT+AGG 0.214939 8.3:-6432014 MS.gene061265:CDS
GAGGTTCTGGTGGAGGCTTT+GGG 0.225401 8.3:-6432149 MS.gene061265:CDS
GGCGGCGCAGGTGGTGGTTT+TGG 0.227259 8.3:-6432036 MS.gene061265:CDS
GGTGGTGCCGGCGGAGGTTT+TGG 0.242299 8.3:-6432648 MS.gene061265:CDS
GGAGGTGCTGGTGGAGGCTT+TGG 0.247051 8.3:-6432216 MS.gene061265:CDS
GGTGGAGTAGGTGGAGGTTC+TGG 0.249484 8.3:-6432162 MS.gene061265:CDS
GGAGGCTTTGGAGGTGGTGC+TGG 0.271782 8.3:-6432204 MS.gene061265:CDS
GGAGGTGGTGGTGCAGGTGG+TGG 0.278928 8.3:-6432474 MS.gene061265:CDS
GGTGGTGCAGGTGGTGGAAT+TGG 0.280923 8.3:-6432468 MS.gene061265:CDS
GTGGACATGGTGGTGGAATC+GGG 0.282878 8.3:-6432443 MS.gene061265:CDS
GGTGGTGGAGGTGCAGGTGG+AGG 0.286321 8.3:-6432114 MS.gene061265:CDS
GGAGGCATTGGAGGTGGTTC+TGG 0.293598 8.3:-6432282 MS.gene061265:CDS
GGAGGGGCTGGTGGAGGATT+TGG 0.298673 8.3:-6432096 MS.gene061265:CDS
GGTGGCTTTGGAGGCGGTGC+TGG 0.301658 8.3:-6432582 MS.gene061265:CDS
GGTGGTGCTGGTGGAGGCTT+TGG 0.304030 8.3:-6432060 MS.gene061265:CDS
GGTGGTGCTGGAGGTGGTGG+AGG 0.307451 8.3:-6432126 MS.gene061265:CDS
GCAGGTGGAGGGGCTGGTGG+AGG 0.307907 8.3:-6432102 MS.gene061265:CDS
CTTGGACACGGTGGTGGCTT+TGG 0.308545 8.3:-6432594 MS.gene061265:CDS
GCTGGAGGTGGTGGAGGTGC+AGG 0.312015 8.3:-6432120 MS.gene061265:CDS
GGAGGTGCAGGTGGAGGGGC+TGG 0.313809 8.3:-6432108 MS.gene061265:CDS
GGTGGACATGGTGGTGGAAT+CGG 0.315986 8.3:-6432444 MS.gene061265:CDS
GGAGGCATTGGAGGTGGTGC+TGG 0.316985 8.3:-6432378 MS.gene061265:CDS
GGTGCAGGTGGAGGGGCTGG+TGG 0.326951 8.3:-6432105 MS.gene061265:CDS
GGAGGAGCCGGTGGAGGCAT+TGG 0.335786 8.3:-6432294 MS.gene061265:CDS
CTAGGTGGAGGTGGTGGTGC+AGG 0.336652 8.3:-6432480 MS.gene061265:CDS
GGTGCGGGTGGTGGAGTAGG+TGG 0.339678 8.3:-6432171 MS.gene061265:CDS
ATTGGAGGTGGTGCTGGAAC+TGG 0.341197 8.3:-6432372 MS.gene061265:CDS
GGCTCTGGTGGAGGCATTGG+AGG 0.343974 8.3:-6432387 MS.gene061265:CDS
GGAGGTGCCGGAGGTGGCTT+CGG 0.344469 8.3:-6432348 MS.gene061265:CDS
GGTGCAGGTGGAGGTGCTGG+TGG 0.345247 8.3:-6432225 MS.gene061265:CDS
GGTGGTGCAGGTGGAGGCTA+TGG 0.345394 8.3:-6432558 MS.gene061265:CDS
GGTGGAAGCGGTGGTGGTAT+AGG 0.348764 8.3:-6432420 MS.gene061265:CDS
GGTGGTGCAGGCGGAGGAAT+TGG 0.353206 8.3:-6432258 MS.gene061265:CDS
GCCGGTGGAGGTGCGGGTGG+TGG 0.354224 8.3:-6432180 MS.gene061265:CDS
GGTGCAGGCGGAGGAATTGG+TGG 0.354368 8.3:-6432255 MS.gene061265:CDS
TGGTGGAGGTGCAGGTGGAG+GGG 0.360765 8.3:-6432112 MS.gene061265:CDS
GGTGGTCATGGTGGTGGACT+AGG 0.370304 8.3:-6432498 MS.gene061265:CDS
GGAGGATTTGGCGGTGGTGC+CGG 0.375820 8.3:-6432084 MS.gene061265:CDS
ATTGGAGGTGGTTCTGGTGG+TGG 0.375920 8.3:-6432276 MS.gene061265:CDS
AGGTTCTGGTGGAGGCTTTG+GGG 0.376982 8.3:-6432148 MS.gene061265:CDS
GTGGTGGAGGTGCAGGTGGA+GGG 0.378169 8.3:-6432113 MS.gene061265:CDS
GGTGGTGCCGGAGGTGGTGC+TGG 0.378771 8.3:-6432072 MS.gene061265:CDS
GGCGGTGCTGGAGGTGGTGC+AGG 0.379929 8.3:-6432570 MS.gene061265:CDS
GGTGGTTCTGGTGGTGGTGC+AGG 0.379970 8.3:-6432270 MS.gene061265:CDS
GCTGGAGCCGGTGGAGGTGC+GGG 0.382283 8.3:-6432186 MS.gene061265:CDS
GGAAGCGGTGGTGGTATAGG+TGG 0.383824 8.3:-6432417 MS.gene061265:CDS
ATAGGTGGAGGAGGAGGCTC+TGG 0.384386 8.3:-6432402 MS.gene061265:CDS
GGTGGTGTAGGTGGAGGAGG+AGG 0.384699 8.3:-6432312 MS.gene061265:CDS
TTTGGAGGCGGCGCAGGTGG+TGG 0.386490 8.3:-6432042 MS.gene061265:CDS
GTGATATTTGCATTGGTGAT+AGG 0.388416 8.3:-6432738 MS.gene061265:CDS
GGAGGCTCTGGTGGAGGCAT+TGG 0.389075 8.3:-6432390 MS.gene061265:CDS
GGAGGCTTTGGAGGCGGCGC+AGG 0.390194 8.3:-6432048 MS.gene061265:CDS
GGTGGCGTGGGTGGTGGTGC+CGG 0.391358 8.3:-6432660 MS.gene061265:CDS
GGCGGCAGTGGTGGAGGTGT+TGG 0.392236 8.3:-6432624 MS.gene061265:CDS
GGTGGTGCTGGAACTGGTGG+AGG 0.394982 8.3:-6432366 MS.gene061265:CDS
GCAGGTGGAGGTGCTGGTGG+AGG 0.397464 8.3:-6432222 MS.gene061265:CDS
TTTGGAGGTGGTGCTGGAGC+CGG 0.398435 8.3:-6432198 MS.gene061265:CDS
GGAGGTGTTGGAGGAGGACT+TGG 0.400513 8.3:-6432612 MS.gene061265:CDS
GGTGCAGGTGGTGGAATTGG+AGG 0.400892 8.3:-6432465 MS.gene061265:CDS
GCTGGAACTGGTGGAGGTGC+CGG 0.407125 8.3:-6432360 MS.gene061265:CDS
TGGACATGGTGGTGGAATCG+GGG 0.412271 8.3:-6432442 MS.gene061265:CDS
GGTGGAGGTGGCGTGGGTGG+TGG 0.413145 8.3:-6432666 MS.gene061265:CDS
GCTGGAGGTGGTGCAGGTGG+AGG 0.414524 8.3:-6432564 MS.gene061265:CDS
AACTTTGGTGGAGGTGGCGT+GGG 0.417311 8.3:-6432672 MS.gene061265:CDS
GCCGGAGGTGGTGCTGGTGG+AGG 0.419981 8.3:-6432066 MS.gene061265:CDS
GGAGGTGCGGGTGGTGGAGT+AGG 0.421790 8.3:-6432174 MS.gene061265:CDS
GGAGGCTATGGAGGTGGTAA+AGG 0.422470 8.3:-6432546 MS.gene061265:CDS
GCTGGTGGAGGCTTTGGAGG+TGG 0.423825 8.3:-6432210 MS.gene061265:CDS
GCCGGAGGTGGCTTCGGAGG+TGG 0.423974 8.3:-6432342 MS.gene061265:CDS
GGTGGTGCTGGAGCCGGTGG+AGG 0.424543 8.3:-6432192 MS.gene061265:CDS
TCTGGTGGTGGTGCAGGCGG+AGG 0.424817 8.3:-6432264 MS.gene061265:CDS
TCTGGTGGAGGCATTGGAGG+TGG 0.426622 8.3:-6432384 MS.gene061265:CDS
ACTGGTGGAGGTGCCGGAGG+TGG 0.429321 8.3:-6432354 MS.gene061265:CDS
TGCTGGAGCCGGTGGAGGTG+CGG 0.429374 8.3:-6432187 MS.gene061265:CDS
GGTGGTGGTGTAGGTGGAGG+AGG 0.430021 8.3:-6432315 MS.gene061265:CDS
TTTGGTGGCGGCAGTGGTGG+AGG 0.430606 8.3:-6432630 MS.gene061265:CDS
TTTGGAGGCGGTGCTGGAGG+TGG 0.431384 8.3:-6432576 MS.gene061265:CDS
GGGGCTGGTGGAGGATTTGG+CGG 0.433056 8.3:-6432093 MS.gene061265:CDS
GGAGGTGGTGGAGGTGCAGG+TGG 0.434036 8.3:-6432117 MS.gene061265:CDS
GGAGGAGGAGGAGCCGGTGG+AGG 0.434108 8.3:-6432300 MS.gene061265:CDS
GGTAATGGTGGTGGTGTAGG+TGG 0.435420 8.3:-6432321 MS.gene061265:CDS
GGTGGCTTCGGAGGTGGTAA+TGG 0.436322 8.3:-6432336 MS.gene061265:CDS
GGCTTTGGAGGCGGCGCAGG+TGG 0.437347 8.3:-6432045 MS.gene061265:CDS
ATTGGAGGTGGACATGGTGG+TGG 0.437569 8.3:-6432450 MS.gene061265:CDS
GCCGGTGGAGGCATTGGAGG+TGG 0.439875 8.3:-6432288 MS.gene061265:CDS
GGTGCTGGTGGAGGCTTTGG+AGG 0.439963 8.3:-6432213 MS.gene061265:CDS
GGTGGACTAGGTGGAGGTGG+TGG 0.441020 8.3:-6432486 MS.gene061265:CDS
TTTGGCGGTGGTGCCGGAGG+TGG 0.443454 8.3:-6432078 MS.gene061265:CDS
GTGGGTGGTGGTGCCGGCGG+AGG 0.443554 8.3:-6432654 MS.gene061265:CDS
GGTGGTAATGGTGGTGGTGT+AGG 0.443950 8.3:-6432324 MS.gene061265:CDS
GGACACGGTGGTGGCTTTGG+AGG 0.444375 8.3:-6432591 MS.gene061265:CDS
GATGAATTTGTTGACAACTT+TGG 0.444899 8.3:-6432687 MS.gene061265:CDS
GTAGGTGGAGGTTCTGGTGG+AGG 0.445601 8.3:-6432156 MS.gene061265:CDS
TGCAGGCGGAGGAATTGGTG+GGG 0.447716 8.3:-6432253 MS.gene061265:CDS
CACGGTGGTGGCTTTGGAGG+CGG 0.457544 8.3:-6432588 MS.gene061265:CDS
GGAGGAATTGGAGGTGGTCA+TGG 0.457657 8.3:-6432510 MS.gene061265:CDS
ATTGGAGGTGGTCATGGTGG+TGG 0.460184 8.3:-6432504 MS.gene061265:CDS
GGACATGGTGGTGGAATCGG+GGG 0.464354 8.3:-6432441 MS.gene061265:CDS
AGTGGTGGAGGTGTTGGAGG+AGG 0.467091 8.3:-6432618 MS.gene061265:CDS
GGTGGTGGACTAGGTGGAGG+TGG 0.467193 8.3:-6432489 MS.gene061265:CDS
GGAGGACTTGGACACGGTGG+TGG 0.468197 8.3:-6432600 MS.gene061265:CDS
GGTGGAGGTGGTGGTGCAGG+TGG 0.468428 8.3:-6432477 MS.gene061265:CDS
GCTGGTGGAGGCTTTGGAGG+CGG 0.469021 8.3:-6432054 MS.gene061265:CDS
GGTTCTGGTGGAGGCTTTGG+GGG 0.469845 8.3:-6432147 MS.gene061265:CDS
GGAGGAGGAGGCTCTGGTGG+AGG 0.470574 8.3:-6432396 MS.gene061265:CDS
GCCTCCACCAGCACCACCTC+CGG 0.471055 8.3:+6432065 None:intergenic
GGAGTAGGTGGAGGTTCTGG+TGG 0.472931 8.3:-6432159 MS.gene061265:CDS
GTAGGTGGAGGAGGAGGAGC+CGG 0.473704 8.3:-6432306 MS.gene061265:CDS
GGAGCCGGTGGAGGCATTGG+AGG 0.473727 8.3:-6432291 MS.gene061265:CDS
AATGGTGGTGGTGTAGGTGG+AGG 0.474194 8.3:-6432318 MS.gene061265:CDS
GGTGCAGGTGGAGGCTATGG+AGG 0.476723 8.3:-6432555 MS.gene061265:CDS
AGGCGGTGCTGGCGGTGATA+GGG 0.477052 8.3:-6432013 MS.gene061265:CDS
ACCACCTCCGAAGCCACCTC+CGG 0.482538 8.3:+6432341 None:intergenic
GGTGGAATTGGAGGTGGACA+TGG 0.486509 8.3:-6432456 MS.gene061265:CDS
GGTGGAGGAGGAGGAGCCGG+TGG 0.489321 8.3:-6432303 MS.gene061265:CDS
GTGCAGGCGGAGGAATTGGT+GGG 0.489742 8.3:-6432254 MS.gene061265:CDS
TTTGGTGGAGGTGGCGTGGG+TGG 0.489746 8.3:-6432669 MS.gene061265:CDS
GGCGTGGGTGGTGGTGCCGG+CGG 0.491147 8.3:-6432657 MS.gene061265:CDS
GGCTTTGGAGGCGGTGCTGG+AGG 0.492028 8.3:-6432579 MS.gene061265:CDS
GGCAGTGGTGGAGGTGTTGG+AGG 0.492172 8.3:-6432621 MS.gene061265:CDS
CAACTTTGGTGGAGGTGGCG+TGG 0.494540 8.3:-6432673 MS.gene061265:CDS
GGCTATGGAGGTGGTAAAGG+TGG 0.498220 8.3:-6432543 MS.gene061265:CDS
GCGGGTGGTGGAGTAGGTGG+AGG 0.500353 8.3:-6432168 MS.gene061265:CDS
GGCATTGGAGGTGGTTCTGG+TGG 0.502373 8.3:-6432279 MS.gene061265:CDS
GGTGCTGGTGGAGGCTTTGG+AGG 0.502603 8.3:-6432057 MS.gene061265:CDS
GGAATTGGAGGTGGACATGG+TGG 0.505286 8.3:-6432453 MS.gene061265:CDS
GGTGGTATAGGTGGAGGAGG+AGG 0.509459 8.3:-6432408 MS.gene061265:CDS
GCTGGTGGAGGATTTGGCGG+TGG 0.511083 8.3:-6432090 MS.gene061265:CDS
TTTGGAGGAGGAATTGGAGG+TGG 0.514889 8.3:-6432516 MS.gene061265:CDS
GTTGACAACTTTGGTGGAGG+TGG 0.516532 8.3:-6432678 MS.gene061265:CDS
TCCACCACCCGCACCTCCAC+CGG 0.521516 8.3:+6432179 None:intergenic
AGCGGTGGTGGTATAGGTGG+AGG 0.522141 8.3:-6432414 MS.gene061265:CDS
GCAGGCGGAGGAATTGGTGG+GGG 0.523874 8.3:-6432252 MS.gene061265:CDS
CATGGTGGTGGACTAGGTGG+AGG 0.527570 8.3:-6432492 MS.gene061265:CDS
GGTGCCGGAGGTGGTGCTGG+TGG 0.529035 8.3:-6432069 MS.gene061265:CDS
GGAGGTGGTGCTGGAGCCGG+TGG 0.529177 8.3:-6432195 MS.gene061265:CDS
GGAACTGGTGGAGGTGCCGG+AGG 0.529772 8.3:-6432357 MS.gene061265:CDS
GGAGGTGGTGCTGGAACTGG+TGG 0.530440 8.3:-6432369 MS.gene061265:CDS
GGTGGTGGTATAGGTGGAGG+AGG 0.535569 8.3:-6432411 MS.gene061265:CDS
GGATTTGGCGGTGGTGCCGG+AGG 0.536059 8.3:-6432081 MS.gene061265:CDS
GCAGGTGGAGGCTATGGAGG+TGG 0.536135 8.3:-6432552 MS.gene061265:CDS
GGAGCCGGTGGAGGTGCGGG+TGG 0.537559 8.3:-6432183 MS.gene061265:CDS
GGTTCTGGTGGTGGTGCAGG+CGG 0.537894 8.3:-6432267 MS.gene061265:CDS
GGTGGAGGAGGAGGCTCTGG+TGG 0.542759 8.3:-6432399 MS.gene061265:CDS
TATGGAGGTGGTAAAGGTGG+TGG 0.543572 8.3:-6432540 MS.gene061265:CDS
GGTCATGGTGGTGGACTAGG+TGG 0.544222 8.3:-6432495 MS.gene061265:CDS
TTCGGAGGTGGTAATGGTGG+TGG 0.545087 8.3:-6432330 MS.gene061265:CDS
ACCACCTCCAATGCCTCCAC+CGG 0.546076 8.3:+6432287 None:intergenic
GCAGGTGGTGGAATTGGAGG+TGG 0.548360 8.3:-6432462 MS.gene061265:CDS
GGTGCTGGAGGTGGTGCAGG+TGG 0.552417 8.3:-6432567 MS.gene061265:CDS
GAATTTGTTGACAACTTTGG+TGG 0.555943 8.3:-6432684 MS.gene061265:CDS
GGAATTGGAGGTGGTCATGG+TGG 0.557632 8.3:-6432507 MS.gene061265:CDS
ACTTGCTGTGATATTTGCAT+TGG 0.561478 8.3:-6432745 MS.gene061265:CDS
GCCGCCACCAAAACCTCCGC+CGG 0.570676 8.3:+6432641 None:intergenic
GGTGCCGGAGGTGGCTTCGG+AGG 0.578863 8.3:-6432345 MS.gene061265:CDS
TTTGTTGACAACTTTGGTGG+AGG 0.589971 8.3:-6432681 MS.gene061265:CDS
TGATAGGAACATCTGAATGC+CGG 0.590146 8.3:-6432722 MS.gene061265:CDS
GGCTTCGGAGGTGGTAATGG+TGG 0.590392 8.3:-6432333 MS.gene061265:CDS
GTTGGAGGAGGACTTGGACA+CGG 0.664809 8.3:-6432606 MS.gene061265:CDS
GGAGGAGGACTTGGACACGG+TGG 0.721731 8.3:-6432603 MS.gene061265:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTCATCTTTTTGTATTTTC+CGG + chr8.3:6432082-6432101 None:intergenic 20.0%
!! GATGAATTTGTTGACAACTT+TGG - chr8.3:6432095-6432114 MS.gene061265:CDS 30.0%
! GTGATATTTGCATTGGTGAT+AGG - chr8.3:6432044-6432063 MS.gene061265:CDS 35.0%
!! ACTTGCTGTGATATTTGCAT+TGG - chr8.3:6432037-6432056 MS.gene061265:CDS 35.0%
!! GAATTTGTTGACAACTTTGG+TGG - chr8.3:6432098-6432117 MS.gene061265:CDS 35.0%
TGATAGGAACATCTGAATGC+CGG - chr8.3:6432060-6432079 MS.gene061265:CDS 40.0%
TTTGTTGACAACTTTGGTGG+AGG - chr8.3:6432101-6432120 MS.gene061265:CDS 40.0%
GTTGACAACTTTGGTGGAGG+TGG - chr8.3:6432104-6432123 MS.gene061265:CDS 50.0%
TATGGAGGTGGTAAAGGTGG+TGG - chr8.3:6432242-6432261 MS.gene061265:CDS 50.0%
TTTGGAGGAGGAATTGGAGG+TGG - chr8.3:6432266-6432285 MS.gene061265:CDS 50.0%
!! GGTGGTAAAGGTGGTGGTTT+TGG - chr8.3:6432248-6432267 MS.gene061265:CDS 50.0%
!!! AAAGGTGGTGGTTTTGGAGG+AGG - chr8.3:6432254-6432273 MS.gene061265:CDS 50.0%
!!! GGTAAAGGTGGTGGTTTTGG+AGG - chr8.3:6432251-6432270 MS.gene061265:CDS 50.0%
!!! GGTGGTTTTGGAGGAGGAAT+TGG - chr8.3:6432260-6432279 MS.gene061265:CDS 50.0%
!!! GGTTTTGGAGGAGGAATTGG+AGG - chr8.3:6432263-6432282 MS.gene061265:CDS 50.0%
AACTTTGGTGGAGGTGGCGT+GGG - chr8.3:6432110-6432129 MS.gene061265:CDS 55.0%
ATTGGAGGTGGACATGGTGG+TGG - chr8.3:6432332-6432351 MS.gene061265:CDS 55.0%
ATTGGAGGTGGTCATGGTGG+TGG - chr8.3:6432278-6432297 MS.gene061265:CDS 55.0%
GGAATTGGAGGTGGACATGG+TGG - chr8.3:6432329-6432348 MS.gene061265:CDS 55.0%
GGAATTGGAGGTGGTCATGG+TGG - chr8.3:6432275-6432294 MS.gene061265:CDS 55.0%
GGAGGAATTGGAGGTGGTCA+TGG - chr8.3:6432272-6432291 MS.gene061265:CDS 55.0%
GGAGGCTATGGAGGTGGTAA+AGG - chr8.3:6432236-6432255 MS.gene061265:CDS 55.0%
GGCTATGGAGGTGGTAAAGG+TGG - chr8.3:6432239-6432258 MS.gene061265:CDS 55.0%
GGTGGAATTGGAGGTGGACA+TGG - chr8.3:6432326-6432345 MS.gene061265:CDS 55.0%
GTTGGAGGAGGACTTGGACA+CGG - chr8.3:6432176-6432195 MS.gene061265:CDS 55.0%
! AGGTTCTGGTGGAGGCTTTG+GGG - chr8.3:6432634-6432653 MS.gene061265:CDS 55.0%
! ATTGGAGGTGGTGCTGGAAC+TGG - chr8.3:6432410-6432429 MS.gene061265:CDS 55.0%
! GAGGTTCTGGTGGAGGCTTT+GGG - chr8.3:6432633-6432652 MS.gene061265:CDS 55.0%
!! AATGGTGGTGGTGTAGGTGG+AGG - chr8.3:6432464-6432483 MS.gene061265:CDS 55.0%
!! ATTGGAGGTGGTTCTGGTGG+TGG - chr8.3:6432506-6432525 MS.gene061265:CDS 55.0%
!! GGTAATGGTGGTGGTGTAGG+TGG - chr8.3:6432461-6432480 MS.gene061265:CDS 55.0%
!! GGTGGACATGGTGGTGGAAT+CGG - chr8.3:6432338-6432357 MS.gene061265:CDS 55.0%
!! GGTGGTAATGGTGGTGGTGT+AGG - chr8.3:6432458-6432477 MS.gene061265:CDS 55.0%
!! GTGGACATGGTGGTGGAATC+GGG - chr8.3:6432339-6432358 MS.gene061265:CDS 55.0%
!! TGGACATGGTGGTGGAATCG+GGG - chr8.3:6432340-6432359 MS.gene061265:CDS 55.0%
!! TTCGGAGGTGGTAATGGTGG+TGG - chr8.3:6432452-6432471 MS.gene061265:CDS 55.0%
ACCACCTCCAATGCCTCCAC+CGG + chr8.3:6432402-6432421 None:intergenic 60.0%
ATAGGTGGAGGAGGAGGCTC+TGG - chr8.3:6432380-6432399 MS.gene061265:CDS 60.0%
CAACTTTGGTGGAGGTGGCG+TGG - chr8.3:6432109-6432128 MS.gene061265:CDS 60.0%
GGTGGAGTAGGTGGAGGTTC+TGG - chr8.3:6432620-6432639 MS.gene061265:CDS 60.0%
GGTGGCTTCGGAGGTGGTAA+TGG - chr8.3:6432446-6432465 MS.gene061265:CDS 60.0%
GGTGGTATAGGTGGAGGAGG+AGG - chr8.3:6432374-6432393 MS.gene061265:CDS 60.0%
GTGCAGGCGGAGGAATTGGT+GGG - chr8.3:6432528-6432547 MS.gene061265:CDS 60.0%
TGCAGGCGGAGGAATTGGTG+GGG - chr8.3:6432529-6432548 MS.gene061265:CDS 60.0%
! AGCGGTGGTGGTATAGGTGG+AGG - chr8.3:6432368-6432387 MS.gene061265:CDS 60.0%
! CTTGGACACGGTGGTGGCTT+TGG - chr8.3:6432188-6432207 MS.gene061265:CDS 60.0%
! GGAAGCGGTGGTGGTATAGG+TGG - chr8.3:6432365-6432384 MS.gene061265:CDS 60.0%
! GGAGGTTCTGGTGGAGGCTT+TGG - chr8.3:6432632-6432651 MS.gene061265:CDS 60.0%
! GGAGTAGGTGGAGGTTCTGG+TGG - chr8.3:6432623-6432642 MS.gene061265:CDS 60.0%
! GGTGGAAGCGGTGGTGGTAT+AGG - chr8.3:6432362-6432381 MS.gene061265:CDS 60.0%
! GGTGGTGGTATAGGTGGAGG+AGG - chr8.3:6432371-6432390 MS.gene061265:CDS 60.0%
! GGTTCTGGTGGAGGCTTTGG+GGG - chr8.3:6432635-6432654 MS.gene061265:CDS 60.0%
! GTAGGTGGAGGTTCTGGTGG+AGG - chr8.3:6432626-6432645 MS.gene061265:CDS 60.0%
! TTTGGAGGTGGTGCTGGAGC+CGG - chr8.3:6432584-6432603 MS.gene061265:CDS 60.0%
!! AGTGGTGGAGGTGTTGGAGG+AGG - chr8.3:6432164-6432183 MS.gene061265:CDS 60.0%
!! CATGGTGGTGGACTAGGTGG+AGG - chr8.3:6432290-6432309 MS.gene061265:CDS 60.0%
!! GCAGGTGGTGGAATTGGAGG+TGG - chr8.3:6432320-6432339 MS.gene061265:CDS 60.0%
!! GGACATGGTGGTGGAATCGG+GGG - chr8.3:6432341-6432360 MS.gene061265:CDS 60.0%
!! GGAGGCATTGGAGGTGGTTC+TGG - chr8.3:6432500-6432519 MS.gene061265:CDS 60.0%
!! GGAGGTGTTGGAGGAGGACT+TGG - chr8.3:6432170-6432189 MS.gene061265:CDS 60.0%
!! GGCATTGGAGGTGGTTCTGG+TGG - chr8.3:6432503-6432522 MS.gene061265:CDS 60.0%
!! GGCTTCGGAGGTGGTAATGG+TGG - chr8.3:6432449-6432468 MS.gene061265:CDS 60.0%
!! GGTCATGGTGGTGGACTAGG+TGG - chr8.3:6432287-6432306 MS.gene061265:CDS 60.0%
!! GGTGCAGGTGGTGGAATTGG+AGG - chr8.3:6432317-6432336 MS.gene061265:CDS 60.0%
!! GGTGGTCATGGTGGTGGACT+AGG - chr8.3:6432284-6432303 MS.gene061265:CDS 60.0%
!! GGTGGTGCAGGTGGTGGAAT+TGG - chr8.3:6432314-6432333 MS.gene061265:CDS 60.0%
!! TCTGGTGGAGGCATTGGAGG+TGG - chr8.3:6432398-6432417 MS.gene061265:CDS 60.0%
!!! GCAGGTGGTGGTTTTGGAGG+CGG - chr8.3:6432752-6432771 MS.gene061265:CDS 60.0%
ACCACCTCCGAAGCCACCTC+CGG + chr8.3:6432444-6432463 None:intergenic 65.0%
CGGAGGAATTGGTGGGGGTG+GGG - chr8.3:6432535-6432554 MS.gene061265:CDS 65.0%
GCAGGCGGAGGAATTGGTGG+GGG - chr8.3:6432530-6432549 MS.gene061265:CDS 65.0%
GCAGGTGGAGGCTATGGAGG+TGG - chr8.3:6432230-6432249 MS.gene061265:CDS 65.0%
GCGGAGGAATTGGTGGGGGT+GGG - chr8.3:6432534-6432553 MS.gene061265:CDS 65.0%
GCTGGTGGAGGATTTGGCGG+TGG - chr8.3:6432692-6432711 MS.gene061265:CDS 65.0%
GGAGGAATTGGTGGGGGTGG+GGG - chr8.3:6432536-6432555 MS.gene061265:CDS 65.0%
GGAGGACTTGGACACGGTGG+TGG - chr8.3:6432182-6432201 MS.gene061265:CDS 65.0%
GGAGGAGGACTTGGACACGG+TGG - chr8.3:6432179-6432198 MS.gene061265:CDS 65.0%
GGAGGATTTGGCGGTGGTGC+CGG - chr8.3:6432698-6432717 MS.gene061265:CDS 65.0%
GGTGCAGGCGGAGGAATTGG+TGG - chr8.3:6432527-6432546 MS.gene061265:CDS 65.0%
GGTGCAGGTGGAGGCTATGG+AGG - chr8.3:6432227-6432246 MS.gene061265:CDS 65.0%
GGTGGAATCGGGGGTGGAAG+CGG - chr8.3:6432350-6432369 MS.gene061265:CDS 65.0%
GGTGGTGCAGGCGGAGGAAT+TGG - chr8.3:6432524-6432543 MS.gene061265:CDS 65.0%
GGTGGTGCAGGTGGAGGCTA+TGG - chr8.3:6432224-6432243 MS.gene061265:CDS 65.0%
GGTGGTGTAGGTGGAGGAGG+AGG - chr8.3:6432470-6432489 MS.gene061265:CDS 65.0%
GTAGGTGGAGGAGGAGGAGC+CGG - chr8.3:6432476-6432495 MS.gene061265:CDS 65.0%
TTTGGTGGAGGTGGCGTGGG+TGG - chr8.3:6432113-6432132 MS.gene061265:CDS 65.0%
! CTAGGTGGAGGTGGTGGTGC+AGG - chr8.3:6432302-6432321 MS.gene061265:CDS 65.0%
! GCTGGAACTGGTGGAGGTGC+CGG - chr8.3:6432422-6432441 MS.gene061265:CDS 65.0%
! GGAGGCTCTGGTGGAGGCAT+TGG - chr8.3:6432392-6432411 MS.gene061265:CDS 65.0%
! GGAGGGGCTGGTGGAGGATT+TGG - chr8.3:6432686-6432705 MS.gene061265:CDS 65.0%
! GGAGGTGGTGCTGGAACTGG+TGG - chr8.3:6432413-6432432 MS.gene061265:CDS 65.0%
! GGGGCTGGTGGAGGATTTGG+CGG - chr8.3:6432689-6432708 MS.gene061265:CDS 65.0%
! GGTGGTGCTGGAACTGGTGG+AGG - chr8.3:6432416-6432435 MS.gene061265:CDS 65.0%
! GGTGGTGGTGTAGGTGGAGG+AGG - chr8.3:6432467-6432486 MS.gene061265:CDS 65.0%
! GTGGTGGAGGTGCAGGTGGA+GGG - chr8.3:6432669-6432688 MS.gene061265:CDS 65.0%
! TGGTGGAGGTGCAGGTGGAG+GGG - chr8.3:6432670-6432689 MS.gene061265:CDS 65.0%
! TTTGGAGGCGGTGCTGGAGG+TGG - chr8.3:6432206-6432225 MS.gene061265:CDS 65.0%
! TTTGGGGGTGGTGCTGGAGG+TGG - chr8.3:6432650-6432669 MS.gene061265:CDS 65.0%
!! AGGCGGTGCTGGCGGTGATA+GGG - chr8.3:6432769-6432788 MS.gene061265:CDS 65.0%
!! CACGGTGGTGGCTTTGGAGG+CGG - chr8.3:6432194-6432213 MS.gene061265:CDS 65.0%
!! CATGGTGGTGGAATCGGGGG+TGG - chr8.3:6432344-6432363 MS.gene061265:CDS 65.0%
!! GCTGGTGGAGGCTTTGGAGG+CGG - chr8.3:6432572-6432591 MS.gene061265:CDS 65.0%
!! GCTGGTGGAGGCTTTGGAGG+TGG - chr8.3:6432572-6432591 MS.gene061265:CDS 65.0%
!! GGACACGGTGGTGGCTTTGG+AGG - chr8.3:6432191-6432210 MS.gene061265:CDS 65.0%
!! GGAGGCATTGGAGGTGGTGC+TGG - chr8.3:6432404-6432423 MS.gene061265:CDS 65.0%
!! GGAGGCTTTGGAGGTGGTGC+TGG - chr8.3:6432578-6432597 MS.gene061265:CDS 65.0%
!! GGAGGTGCTGGTGGAGGCTT+TGG - chr8.3:6432566-6432585 MS.gene061265:CDS 65.0%
!! GGCAGTGGTGGAGGTGTTGG+AGG - chr8.3:6432161-6432180 MS.gene061265:CDS 65.0%
!! GGCTCTGGTGGAGGCATTGG+AGG - chr8.3:6432395-6432414 MS.gene061265:CDS 65.0%
!! GGTGCTGGTGGAGGCTTTGG+AGG - chr8.3:6432569-6432588 MS.gene061265:CDS 65.0%
!! GGTGGACTAGGTGGAGGTGG+TGG - chr8.3:6432296-6432315 MS.gene061265:CDS 65.0%
!! GGTGGTGCTGGTGGAGGCTT+TGG - chr8.3:6432722-6432741 MS.gene061265:CDS 65.0%
!! GGTGGTGGACTAGGTGGAGG+TGG - chr8.3:6432293-6432312 MS.gene061265:CDS 65.0%
!! GGTGGTTCTGGTGGTGGTGC+AGG - chr8.3:6432512-6432531 MS.gene061265:CDS 65.0%
!! GGTTCTGGTGGTGGTGCAGG+CGG - chr8.3:6432515-6432534 MS.gene061265:CDS 65.0%
!! TCTGGTGGAGGCTTTGGGGG+TGG - chr8.3:6432638-6432657 MS.gene061265:CDS 65.0%
!! TTTGGTGGCGGCAGTGGTGG+AGG - chr8.3:6432152-6432171 MS.gene061265:CDS 65.0%
!!! GGAGGTTTTGGTGGCGGCAG+TGG - chr8.3:6432146-6432165 MS.gene061265:CDS 65.0%
!!! GGCGCAGGTGGTGGTTTTGG+AGG - chr8.3:6432749-6432768 MS.gene061265:CDS 65.0%
!!! GGTGGTTTTGGAGGCGGTGC+TGG - chr8.3:6432758-6432777 MS.gene061265:CDS 65.0%
!!! GGTTTTGGAGGCGGTGCTGG+CGG - chr8.3:6432761-6432780 MS.gene061265:CDS 65.0%
!!! GGTTTTGGTGGCGGCAGTGG+TGG - chr8.3:6432149-6432168 MS.gene061265:CDS 65.0%
ATCGGGGGTGGAAGCGGTGG+TGG - chr8.3:6432356-6432375 MS.gene061265:CDS 70.0%
GCCGCCACCAAAACCTCCGC+CGG + chr8.3:6432144-6432163 None:intergenic 70.0%
GCCTCCACCAGCACCACCTC+CGG + chr8.3:6432720-6432739 None:intergenic 70.0%
GCTGGAGGTGGTGCAGGTGG+AGG - chr8.3:6432218-6432237 MS.gene061265:CDS 70.0%
GGAATCGGGGGTGGAAGCGG+TGG - chr8.3:6432353-6432372 MS.gene061265:CDS 70.0%
GGCGGAGGAATTGGTGGGGG+TGG - chr8.3:6432533-6432552 MS.gene061265:CDS 70.0%
TCCACCACCCGCACCTCCAC+CGG + chr8.3:6432606-6432625 None:intergenic 70.0%
TGCTGGAGCCGGTGGAGGTG+CGG - chr8.3:6432595-6432614 MS.gene061265:CDS 70.0%
TTTGGAGGCGGCGCAGGTGG+TGG - chr8.3:6432740-6432759 MS.gene061265:CDS 70.0%
! ATTGGTGGGGGTGGGGGTGC+AGG - chr8.3:6432542-6432561 MS.gene061265:CDS 70.0%
! GGAGGAGCCGGTGGAGGCAT+TGG - chr8.3:6432488-6432507 MS.gene061265:CDS 70.0%
! GGAGGAGGAGGCTCTGGTGG+AGG - chr8.3:6432386-6432405 MS.gene061265:CDS 70.0%
! GGAGGTGGTGGTGCAGGTGG+TGG - chr8.3:6432308-6432327 MS.gene061265:CDS 70.0%
! GGATTTGGCGGTGGTGCCGG+AGG - chr8.3:6432701-6432720 MS.gene061265:CDS 70.0%
! GGCGGCAGTGGTGGAGGTGT+TGG - chr8.3:6432158-6432177 MS.gene061265:CDS 70.0%
! GGTGCTGGAGGTGGTGCAGG+TGG - chr8.3:6432215-6432234 MS.gene061265:CDS 70.0%
! GGTGGAGGAGGAGGCTCTGG+TGG - chr8.3:6432383-6432402 MS.gene061265:CDS 70.0%
! GGTGGAGGTGGTGGTGCAGG+TGG - chr8.3:6432305-6432324 MS.gene061265:CDS 70.0%
! GGTGGTGCTGGAGGTGGTGG+AGG - chr8.3:6432656-6432675 MS.gene061265:CDS 70.0%
! TTTGGCGGTGGTGCCGGAGG+TGG - chr8.3:6432704-6432723 MS.gene061265:CDS 70.0%
!! ACTGGTGGAGGTGCCGGAGG+TGG - chr8.3:6432428-6432447 MS.gene061265:CDS 70.0%
!! GAGGCGGTGCTGGCGGTGAT+AGG - chr8.3:6432768-6432787 MS.gene061265:CDS 70.0%
!! GCAGGTGGAGGTGCTGGTGG+AGG - chr8.3:6432560-6432579 MS.gene061265:CDS 70.0%
!! GCCGGCGGAGGTTTTGGTGG+CGG - chr8.3:6432140-6432159 MS.gene061265:CDS 70.0%
!! GCCGGTGGAGGCATTGGAGG+TGG - chr8.3:6432494-6432513 MS.gene061265:CDS 70.0%
!! GCGGGTGGTGGAGTAGGTGG+AGG - chr8.3:6432614-6432633 MS.gene061265:CDS 70.0%
!! GCTGGAGGTGGTGGAGGTGC+AGG - chr8.3:6432662-6432681 MS.gene061265:CDS 70.0%
!! GGAACTGGTGGAGGTGCCGG+AGG - chr8.3:6432425-6432444 MS.gene061265:CDS 70.0%
!! GGAGCCGGTGGAGGCATTGG+AGG - chr8.3:6432491-6432510 MS.gene061265:CDS 70.0%
!! GGAGGCTTTGGGGGTGGTGC+TGG - chr8.3:6432644-6432663 MS.gene061265:CDS 70.0%
!! GGAGGTGCCGGAGGTGGCTT+CGG - chr8.3:6432434-6432453 MS.gene061265:CDS 70.0%
!! GGAGGTGCGGGTGGTGGAGT+AGG - chr8.3:6432608-6432627 MS.gene061265:CDS 70.0%
!! GGAGGTGGTGGAGGTGCAGG+TGG - chr8.3:6432665-6432684 MS.gene061265:CDS 70.0%
!! GGCGGCGCAGGTGGTGGTTT+TGG - chr8.3:6432746-6432765 MS.gene061265:CDS 70.0%
!! GGCTTTGGAGGCGGTGCTGG+AGG - chr8.3:6432203-6432222 MS.gene061265:CDS 70.0%
!! GGCTTTGGGGGTGGTGCTGG+AGG - chr8.3:6432647-6432666 MS.gene061265:CDS 70.0%
!! GGTGCAGGTGGAGGTGCTGG+TGG - chr8.3:6432557-6432576 MS.gene061265:CDS 70.0%
!! GGTGCGGGTGGTGGAGTAGG+TGG - chr8.3:6432611-6432630 MS.gene061265:CDS 70.0%
!! GGTGGCTTTGGAGGCGGTGC+TGG - chr8.3:6432200-6432219 MS.gene061265:CDS 70.0%
!! GGTGGTGGAGGTGCAGGTGG+AGG - chr8.3:6432668-6432687 MS.gene061265:CDS 70.0%
!! TCTGGTGGTGGTGCAGGCGG+AGG - chr8.3:6432518-6432537 MS.gene061265:CDS 70.0%
!!! GGTGCCGGCGGAGGTTTTGG+TGG - chr8.3:6432137-6432156 MS.gene061265:CDS 70.0%
!!! GGTGGTGCCGGCGGAGGTTT+TGG - chr8.3:6432134-6432153 MS.gene061265:CDS 70.0%
GCCGGAGGTGGCTTCGGAGG+TGG - chr8.3:6432440-6432459 MS.gene061265:CDS 75.0%
GGAGGAGGAGGAGCCGGTGG+AGG - chr8.3:6432482-6432501 MS.gene061265:CDS 75.0%
GGTGCAGGTGGAGGGGCTGG+TGG - chr8.3:6432677-6432696 MS.gene061265:CDS 75.0%
GGTGGAGGAGGAGGAGCCGG+TGG - chr8.3:6432479-6432498 MS.gene061265:CDS 75.0%
GGTGGAGGTGGCGTGGGTGG+TGG - chr8.3:6432116-6432135 MS.gene061265:CDS 75.0%
! GCAGGTGGAGGGGCTGGTGG+AGG - chr8.3:6432680-6432699 MS.gene061265:CDS 75.0%
! GCTGGAGCCGGTGGAGGTGC+GGG - chr8.3:6432596-6432615 MS.gene061265:CDS 75.0%
! GGAGGTGCAGGTGGAGGGGC+TGG - chr8.3:6432674-6432693 MS.gene061265:CDS 75.0%
! GGAGGTGGTGCTGGAGCCGG+TGG - chr8.3:6432587-6432606 MS.gene061265:CDS 75.0%
! GGCGGTGCTGGAGGTGGTGC+AGG - chr8.3:6432212-6432231 MS.gene061265:CDS 75.0%
! GGGGGTGCAGGTGGAGGTGC+TGG - chr8.3:6432554-6432573 MS.gene061265:CDS 75.0%
! GGGGGTGGTGCTGGAGGTGG+TGG - chr8.3:6432653-6432672 MS.gene061265:CDS 75.0%
! GGTGCCGGAGGTGGCTTCGG+AGG - chr8.3:6432437-6432456 MS.gene061265:CDS 75.0%
! GGTGCCGGAGGTGGTGCTGG+TGG - chr8.3:6432713-6432732 MS.gene061265:CDS 75.0%
! GGTGGCGTGGGTGGTGGTGC+CGG - chr8.3:6432122-6432141 MS.gene061265:CDS 75.0%
! GGTGGTGCCGGAGGTGGTGC+TGG - chr8.3:6432710-6432729 MS.gene061265:CDS 75.0%
! GGTGGTGCTGGAGCCGGTGG+AGG - chr8.3:6432590-6432609 MS.gene061265:CDS 75.0%
!! GCCGGAGGTGGTGCTGGTGG+AGG - chr8.3:6432716-6432735 MS.gene061265:CDS 75.0%
!! GGAGGCTTTGGAGGCGGCGC+AGG - chr8.3:6432734-6432753 MS.gene061265:CDS 75.0%
!! GGCTTTGGAGGCGGCGCAGG+TGG - chr8.3:6432737-6432756 MS.gene061265:CDS 75.0%
!! GCCGGTGGAGGTGCGGGTGG+TGG - chr8.3:6432602-6432621 MS.gene061265:CDS 80.0%
!! GGAGCCGGTGGAGGTGCGGG+TGG - chr8.3:6432599-6432618 MS.gene061265:CDS 80.0%
!! GGCGTGGGTGGTGGTGCCGG+CGG - chr8.3:6432125-6432144 MS.gene061265:CDS 80.0%
!! GGGGGTGGGGGTGCAGGTGG+AGG - chr8.3:6432548-6432567 MS.gene061265:CDS 80.0%
!! GGTGGGGGTGGGGGTGCAGG+TGG - chr8.3:6432545-6432564 MS.gene061265:CDS 80.0%
!!! GTGGGTGGTGGTGCCGGCGG+AGG - chr8.3:6432128-6432147 MS.gene061265:CDS 80.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 6432008 6432796 6432008 ID=MS.gene061265
chr8.3 mRNA 6432008 6432796 6432008 ID=MS.gene061265.t1;Parent=MS.gene061265
chr8.3 exon 6432008 6432796 6432008 ID=MS.gene061265.t1.exon1;Parent=MS.gene061265.t1
chr8.3 CDS 6432008 6432796 6432008 ID=cds.MS.gene061265.t1;Parent=MS.gene061265.t1
Gene Sequence

>MS.gene061265

ATGGGAAATTTACACAAGTATGTTGTAGTACTTGCTGTGATATTTGCATTGGTGATAGGAACATCTGAATGCCGGAAAATACAAAAAGATGAATTTGTTGACAACTTTGGTGGAGGTGGCGTGGGTGGTGGTGCCGGCGGAGGTTTTGGTGGCGGCAGTGGTGGAGGTGTTGGAGGAGGACTTGGACACGGTGGTGGCTTTGGAGGCGGTGCTGGAGGTGGTGCAGGTGGAGGCTATGGAGGTGGTAAAGGTGGTGGTTTTGGAGGAGGAATTGGAGGTGGTCATGGTGGTGGACTAGGTGGAGGTGGTGGTGCAGGTGGTGGAATTGGAGGTGGACATGGTGGTGGAATCGGGGGTGGAAGCGGTGGTGGTATAGGTGGAGGAGGAGGCTCTGGTGGAGGCATTGGAGGTGGTGCTGGAACTGGTGGAGGTGCCGGAGGTGGCTTCGGAGGTGGTAATGGTGGTGGTGTAGGTGGAGGAGGAGGAGCCGGTGGAGGCATTGGAGGTGGTTCTGGTGGTGGTGCAGGCGGAGGAATTGGTGGGGGTGGGGGTGCAGGTGGAGGTGCTGGTGGAGGCTTTGGAGGTGGTGCTGGAGCCGGTGGAGGTGCGGGTGGTGGAGTAGGTGGAGGTTCTGGTGGAGGCTTTGGGGGTGGTGCTGGAGGTGGTGGAGGTGCAGGTGGAGGGGCTGGTGGAGGATTTGGCGGTGGTGCCGGAGGTGGTGCTGGTGGAGGCTTTGGAGGCGGCGCAGGTGGTGGTTTTGGAGGCGGTGCTGGCGGTGATAGGGTTTGA

Protein sequence

>MS.gene061265.t1

MGNLHKYVVVLAVIFALVIGTSECRKIQKDEFVDNFGGGGVGGGAGGGFGGGSGGGVGGGLGHGGGFGGGAGGGAGGGYGGGKGGGFGGGIGGGHGGGLGGGGGAGGGIGGGHGGGIGGGSGGGIGGGGGSGGGIGGGAGTGGGAGGGFGGGNGGGVGGGGGAGGGIGGGSGGGAGGGIGGGGGAGGGAGGGFGGGAGAGGGAGGGVGGGSGGGFGGGAGGGGGAGGGAGGGFGGGAGGGAGGGFGGGAGGGFGGGAGGDRV