Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45334.t1 | KEH29604.1 | 96.9 | 479 | 15 | 0 | 1 | 479 | 31 | 509 | 2.10E-270 | 941 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45334.t1 | M1BYJ7 | 68.8 | 480 | 147 | 2 | 2 | 478 | 29 | 508 | 8.3e-199 | 694.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45334.t1 | A0A072UIL2 | 96.9 | 479 | 15 | 0 | 1 | 479 | 31 | 509 | 1.5e-270 | 941.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene45334 | 0.804356 | 2.25E-49 | -1.69E-46 |
| MS.gene050237 | MS.gene45334 | 0.811948 | 5.42E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene45334 | 0.807963 | 3.91E-50 | -1.69E-46 |
| MS.gene052239 | MS.gene45334 | -0.802529 | 5.37E-49 | -1.69E-46 |
| MS.gene052242 | MS.gene45334 | -0.802136 | 6.47E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene45334 | 0.804539 | 2.06E-49 | -1.69E-46 |
| MS.gene053575 | MS.gene45334 | 0.816227 | 6.16E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene45334 | 0.810808 | 9.59E-51 | -1.69E-46 |
| MS.gene056699 | MS.gene45334 | 0.804573 | 2.02E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene45334 | 0.820159 | 7.95E-53 | -1.69E-46 |
| MS.gene058635 | MS.gene45334 | 0.801864 | 7.36E-49 | -1.69E-46 |
| MS.gene060167 | MS.gene45334 | 0.806138 | 9.51E-50 | -1.69E-46 |
| MS.gene060840 | MS.gene45334 | 0.83765 | 4.59E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 102 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATGGAGAAATAAAATTT+TGG | 0.179733 | 4.3:-54037509 | MS.gene45334:CDS |
| TTTCTACTCTTCCAGTTATA+AGG | 0.181494 | 4.3:-54036336 | MS.gene45334:CDS |
| TTCTCTGGATTATGACTTCT+TGG | 0.237305 | 4.3:-54037400 | MS.gene45334:CDS |
| ACAAGTGACACTCGGTAATA+AGG | 0.258096 | 4.3:+54038007 | None:intergenic |
| GAAAATCGTCGAGGTCCTTC+TGG | 0.265610 | 4.3:+54035270 | None:intergenic |
| TCCATAAAATCCCTTATAAC+TGG | 0.268000 | 4.3:+54036325 | None:intergenic |
| ATAATTTCTTCAAATCTTCT+TGG | 0.269593 | 4.3:+54036850 | None:intergenic |
| TGCTTTATGTGCAGACTAAA+AGG | 0.276588 | 4.3:-54036089 | MS.gene45334:intron |
| GGGTGATGATCTTCAATATT+AGG | 0.302508 | 4.3:+54038152 | None:intergenic |
| TGATATCATGGACATATTTA+AGG | 0.307481 | 4.3:-54035709 | MS.gene45334:CDS |
| GGCTGCTACCAGTTTCCTTA+AGG | 0.325292 | 4.3:-54038093 | MS.gene45334:CDS |
| GGTCCGAAACATCATTAAAA+AGG | 0.335197 | 4.3:-54037952 | MS.gene45334:intron |
| TTCGAATTCTTCTACAGTTA+AGG | 0.336831 | 4.3:+54035662 | None:intergenic |
| AGAAAAGAAATAGACATAGA+AGG | 0.337515 | 4.3:-54035531 | MS.gene45334:CDS |
| TGCCCCATGGATTGGTTATC+TGG | 0.341582 | 4.3:-54036369 | MS.gene45334:CDS |
| TACCAGTTTCCTTAAGGGTT+TGG | 0.342817 | 4.3:-54038087 | MS.gene45334:CDS |
| TTCTACTCTTCCAGTTATAA+GGG | 0.363991 | 4.3:-54036335 | MS.gene45334:CDS |
| GCTGCTACCAGTTTCCTTAA+GGG | 0.367418 | 4.3:-54038092 | MS.gene45334:CDS |
| ATTCATACCTGTGCAGTTGC+TGG | 0.368331 | 4.3:+54035462 | None:intergenic |
| GATCGATGCTGCAGACAAAA+AGG | 0.375334 | 4.3:-54037469 | MS.gene45334:CDS |
| ATCCAAACCCTTAAGGAAAC+TGG | 0.396227 | 4.3:+54038085 | None:intergenic |
| AAAGTCGTGGTCCTTGGAAC+TGG | 0.400385 | 4.3:-54038119 | MS.gene45334:CDS |
| CCTTTCTGTTGCAGATTCCC+AGG | 0.415308 | 4.3:-54035496 | MS.gene45334:CDS |
| GAAACATATACTTGATTTGA+GGG | 0.422160 | 4.3:-54035583 | MS.gene45334:CDS |
| ATCATCGGTTTCGTCCCTTC+CGG | 0.425142 | 4.3:-54035236 | MS.gene45334:CDS |
| CAAGTGACACTCGGTAATAA+GGG | 0.426656 | 4.3:+54038008 | None:intergenic |
| GAAAAGAAATAGACATAGAA+GGG | 0.433481 | 4.3:-54035530 | MS.gene45334:CDS |
| AAGATAACACTAATTCAATC+TGG | 0.440272 | 4.3:-54036804 | MS.gene45334:CDS |
| AGCACGGAGCATCGTAGAAC+CGG | 0.466245 | 4.3:-54037973 | MS.gene45334:CDS |
| GTCTAATATTGAAAACTTAG+TGG | 0.466929 | 4.3:-54037436 | MS.gene45334:CDS |
| ACAATGAAGGTGAAATCAAC+GGG | 0.470147 | 4.3:-54036406 | MS.gene45334:CDS |
| TTGCTCTGTGCCCCATGGAT+TGG | 0.473874 | 4.3:-54036377 | MS.gene45334:CDS |
| ATGAACCATCCAAACCCTTA+AGG | 0.478727 | 4.3:+54038078 | None:intergenic |
| TATCTTGACTTTATCTTGAA+CGG | 0.481241 | 4.3:+54036821 | None:intergenic |
| GATGAATGGTTGAGAGTAAA+GGG | 0.482352 | 4.3:-54036051 | MS.gene45334:CDS |
| AGATGGTATAGAAGTTCAAA+CGG | 0.484698 | 4.3:-54036464 | MS.gene45334:CDS |
| TTGCTGGAAGAGTCTTCACC+TGG | 0.485095 | 4.3:+54035478 | None:intergenic |
| TGATGAATGGTTGAGAGTAA+AGG | 0.485744 | 4.3:-54036052 | MS.gene45334:CDS |
| TTGACTTTATCTTGAACGGT+TGG | 0.486007 | 4.3:+54036825 | None:intergenic |
| TATTACCGAGTGTCACTTGT+GGG | 0.486394 | 4.3:-54038004 | MS.gene45334:CDS |
| AGTTTCCTTAAGGGTTTGGA+TGG | 0.492808 | 4.3:-54038083 | MS.gene45334:CDS |
| GCGGTTTGCTCTGTGCCCCA+TGG | 0.497062 | 4.3:-54036382 | MS.gene45334:CDS |
| TTCTTCTACAGTTAAGGTAC+CGG | 0.501994 | 4.3:+54035668 | None:intergenic |
| TTTAGATAGTATTCAACTTG+AGG | 0.503159 | 4.3:+54035609 | None:intergenic |
| GTTGTTGGAGGAGGTCCAAC+TGG | 0.504579 | 4.3:-54036906 | MS.gene45334:CDS |
| TTGGATAAAATCATGCAGTT+CGG | 0.505426 | 4.3:+54036869 | None:intergenic |
| GGATTGGTTATCTGGTCCAC+TGG | 0.513081 | 4.3:-54036361 | MS.gene45334:CDS |
| AGAAACATATACTTGATTTG+AGG | 0.514547 | 4.3:-54035584 | MS.gene45334:CDS |
| AATAAATCAACGTAAAATCA+TGG | 0.516150 | 4.3:-54035992 | MS.gene45334:intron |
| TCGTGGTCCTTGGAACTGGA+TGG | 0.516860 | 4.3:-54038115 | MS.gene45334:CDS |
| ATTGAAAACTTAGTGGGAAG+TGG | 0.521615 | 4.3:-54037429 | MS.gene45334:CDS |
| CTTGGAAATTGCAGTGGTGG+AGG | 0.522174 | 4.3:-54038215 | None:intergenic |
| TCTAATATTGAAAACTTAGT+GGG | 0.522285 | 4.3:-54037435 | MS.gene45334:CDS |
| CTGCTTCTAGGATGATATCA+TGG | 0.528268 | 4.3:-54035721 | MS.gene45334:intron |
| AAATTGCAGTGGTGGAGGTG+TGG | 0.536520 | 4.3:-54038210 | None:intergenic |
| GAGAAGAAGTTTACAAGAGA+TGG | 0.536920 | 4.3:-54036481 | MS.gene45334:CDS |
| TACTTGATTTGAGGGTTCTG+TGG | 0.539810 | 4.3:-54035575 | MS.gene45334:CDS |
| TGACAAGGAAATTACAATGA+AGG | 0.542053 | 4.3:-54036419 | MS.gene45334:CDS |
| CTGGGAATCTGCAACAGAAA+GGG | 0.543531 | 4.3:+54035497 | None:intergenic |
| TGCTCCTCTTCAGATTGACT+CGG | 0.543713 | 4.3:+54036951 | None:intergenic |
| CCTGGGAATCTGCAACAGAA+AGG | 0.545647 | 4.3:+54035496 | None:intergenic |
| GCAGACTAAAAGGCATGTAC+TGG | 0.547750 | 4.3:-54036079 | MS.gene45334:intron |
| CGTGGTCCTTGGAACTGGAT+GGG | 0.554266 | 4.3:-54038114 | MS.gene45334:CDS |
| TTTCAGGATCTGGACATCAT+CGG | 0.554643 | 4.3:-54035251 | MS.gene45334:CDS |
| GACTTCTTGGTTGTAGCAGT+AGG | 0.555062 | 4.3:-54037387 | MS.gene45334:CDS |
| GATGGTATAGAAGTTCAAAC+GGG | 0.560775 | 4.3:-54036463 | MS.gene45334:CDS |
| TTATTACCGAGTGTCACTTG+TGG | 0.560816 | 4.3:-54038005 | MS.gene45334:CDS |
| TGTGAAGATGTGTTTGCCAT+TGG | 0.561141 | 4.3:-54036027 | MS.gene45334:CDS |
| TGGACCAGATAACCAATCCA+TGG | 0.561236 | 4.3:+54036365 | None:intergenic |
| GACTCTTCCAGCAACTGCAC+AGG | 0.562506 | 4.3:-54035469 | MS.gene45334:intron |
| AGAAGAATTCGAAGAAGTGA+TGG | 0.565316 | 4.3:-54035652 | MS.gene45334:CDS |
| AGACATAGAAGGGTTTAAGC+TGG | 0.568776 | 4.3:-54035520 | MS.gene45334:CDS |
| GCTGCAAATTCAACACCAGT+TGG | 0.569812 | 4.3:+54036891 | None:intergenic |
| TACAATGAAGGTGAAATCAA+CGG | 0.574139 | 4.3:-54036407 | MS.gene45334:CDS |
| GGACCAGATAACCAATCCAT+GGG | 0.579782 | 4.3:+54036366 | None:intergenic |
| TATTGATGAACAATCACCAA+TGG | 0.585097 | 4.3:+54036011 | None:intergenic |
| GTCAATCTGAAGAGGAGCAA+AGG | 0.596000 | 4.3:-54036947 | MS.gene45334:CDS |
| ATGTACTGGCAACTGATGAA+TGG | 0.599584 | 4.3:-54036065 | MS.gene45334:CDS |
| CGCGATTAAAGCAACTTGCT+AGG | 0.599701 | 4.3:+54035313 | None:intergenic |
| AAGATAGGGGTTTACCGGAA+GGG | 0.601174 | 4.3:+54035222 | None:intergenic |
| TGTAATAGATTGTCTTGAGA+AGG | 0.601188 | 4.3:-54036982 | MS.gene45334:CDS |
| TGACAGTTCTCCTTAACACC+AGG | 0.601556 | 4.3:+54037339 | None:intergenic |
| GAAGGTGAAATCAACGGGAG+CGG | 0.608655 | 4.3:-54036401 | MS.gene45334:CDS |
| TTGCAGTGGTGGAGGTGTGG+TGG | 0.618841 | 4.3:-54038207 | None:intergenic |
| AAAGATAGGGGTTTACCGGA+AGG | 0.622241 | 4.3:+54035221 | None:intergenic |
| TCTTCCGAGTCAATCTGAAG+AGG | 0.623685 | 4.3:-54036955 | MS.gene45334:CDS |
| ATATAGGTTGCTGCGCAACA+AGG | 0.625684 | 4.3:-54035342 | MS.gene45334:intron |
| TAGCAGCCCATCCAGTTCCA+AGG | 0.629847 | 4.3:+54038108 | None:intergenic |
| CTTGTGGGTCAGTTGAAGCA+CGG | 0.632171 | 4.3:-54037989 | MS.gene45334:CDS |
| TGCTGGAAGAGTCTTCACCT+GGG | 0.634925 | 4.3:+54035479 | None:intergenic |
| GATACTGAAGAGCATCCAGA+AGG | 0.642109 | 4.3:-54035285 | MS.gene45334:CDS |
| GACAGTTCTCCTTAACACCA+GGG | 0.658869 | 4.3:+54037340 | None:intergenic |
| TAATCACTTATAGAGTGTCG+AGG | 0.680994 | 4.3:-54037027 | MS.gene45334:intron |
| ACTGACCCACAAGTGACACT+CGG | 0.681921 | 4.3:+54037999 | None:intergenic |
| TGTCATCAACACTCATAACA+CGG | 0.684459 | 4.3:+54036437 | None:intergenic |
| TGTTATGAGTGTTGATGACA+AGG | 0.693444 | 4.3:-54036434 | MS.gene45334:CDS |
| TGGAAGAGTAGAAATGCCAG+TGG | 0.705182 | 4.3:+54036345 | None:intergenic |
| ACAGTTCTCCTTAACACCAG+GGG | 0.714844 | 4.3:+54037341 | None:intergenic |
| GTAAATGCAAAGTAGTTACG+AGG | 0.734579 | 4.3:+54038032 | None:intergenic |
| GTTCTGTGGAACGACCCACA+AGG | 0.743834 | 4.3:-54035561 | MS.gene45334:CDS |
| CCAGATCCTGAAAATCGTCG+AGG | 0.744477 | 4.3:+54035261 | None:intergenic |
| GACCAGATAACCAATCCATG+GGG | 0.771259 | 4.3:+54036367 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATCAATG+AGG | + | chr4.3:54037586-54037605 | None:intergenic | 10.0% |
| !! | TATAATCATCAAAATATATT+TGG | - | chr4.3:54036146-54036165 | MS.gene45334:intron | 10.0% |
| !!! | TTACATTAACTTTTTTTTTT+TGG | + | chr4.3:54035696-54035715 | None:intergenic | 10.0% |
| !! | ATAAAAATTAACTATGATGT+TGG | - | chr4.3:54037297-54037316 | MS.gene45334:intron | 15.0% |
| !! | ATGATCATATTTATTAGTTA+AGG | + | chr4.3:54035747-54035766 | None:intergenic | 15.0% |
| !! | CAAAATATATTTGGATTTAA+AGG | - | chr4.3:54036155-54036174 | MS.gene45334:intron | 15.0% |
| !! | CTAATAAATATGATCATTAA+AGG | - | chr4.3:54035771-54035790 | MS.gene45334:intron | 15.0% |
| !!! | AAATGGAGAAATAAAATTTT+GGG | - | chr4.3:54035926-54035945 | MS.gene45334:intron | 15.0% |
| !!! | CAAACTTTTCAAAATTAATA+CGG | - | chr4.3:54037520-54037539 | MS.gene45334:intron | 15.0% |
| !! | AAAAACAATTAAATGCGTAT+TGG | + | chr4.3:54037263-54037282 | None:intergenic | 20.0% |
| !! | AATAAACAATACTTTCCTTT+AGG | - | chr4.3:54037225-54037244 | MS.gene45334:intron | 20.0% |
| !! | AATAAATCAACGTAAAATCA+TGG | - | chr4.3:54037442-54037461 | MS.gene45334:CDS | 20.0% |
| !! | AGTGATTATATACAACATAT+TGG | + | chr4.3:54036395-54036414 | None:intergenic | 20.0% |
| !! | ATAATTTCTTCAAATCTTCT+TGG | + | chr4.3:54036587-54036606 | None:intergenic | 20.0% |
| !! | TAAAAATAACATTGAAACTC+TGG | - | chr4.3:54036720-54036739 | MS.gene45334:intron | 20.0% |
| !! | TAATTATATCCATATAAGCT+TGG | - | chr4.3:54037320-54037339 | MS.gene45334:intron | 20.0% |
| !! | TCTAATATTGAAAACTTAGT+GGG | - | chr4.3:54035999-54036018 | MS.gene45334:CDS | 20.0% |
| !!! | AAATGCTTTTAAAAAATGCA+TGG | + | chr4.3:54037161-54037180 | None:intergenic | 20.0% |
| !!! | AATTTTCAGATATAATCACA+AGG | + | chr4.3:54035823-54035842 | None:intergenic | 20.0% |
| !!! | AGCTTAAGTTTTTAATGTAT+CGG | - | chr4.3:54038066-54038085 | MS.gene45334:CDS | 20.0% |
| !!! | GAAATGGAGAAATAAAATTT+TGG | - | chr4.3:54035925-54035944 | MS.gene45334:intron | 20.0% |
| !!! | TATGATTATTTGTTGATTAG+AGG | - | chr4.3:54036300-54036319 | MS.gene45334:intron | 20.0% |
| !!! | TTTAATGTATCGGTATATAT+AGG | - | chr4.3:54038076-54038095 | MS.gene45334:CDS | 20.0% |
| ! | AAGATAACACTAATTCAATC+TGG | - | chr4.3:54036630-54036649 | MS.gene45334:intron | 25.0% |
| ! | AATATCATCTTCAATCTTGT+AGG | - | chr4.3:54036903-54036922 | MS.gene45334:CDS | 25.0% |
| ! | AGAAAAGAAATAGACATAGA+AGG | - | chr4.3:54037903-54037922 | MS.gene45334:intron | 25.0% |
| ! | ATGTGTGTAGAATTGTTTAA+TGG | - | chr4.3:54036256-54036275 | MS.gene45334:intron | 25.0% |
| ! | CAGATAAATAAATTCAACAG+TGG | + | chr4.3:54037675-54037694 | None:intergenic | 25.0% |
| ! | GAAAAGAAATAGACATAGAA+GGG | - | chr4.3:54037904-54037923 | MS.gene45334:intron | 25.0% |
| ! | GAAGCAAAATTAGATTTCTA+TGG | - | chr4.3:54035510-54035529 | MS.gene45334:CDS | 25.0% |
| ! | GTCTAATATTGAAAACTTAG+TGG | - | chr4.3:54035998-54036017 | MS.gene45334:CDS | 25.0% |
| ! | TATCTTGACTTTATCTTGAA+CGG | + | chr4.3:54036616-54036635 | None:intergenic | 25.0% |
| ! | TGATATCATGGACATATTTA+AGG | - | chr4.3:54037725-54037744 | MS.gene45334:intron | 25.0% |
| ! | TTTAGATAGTATTCAACTTG+AGG | + | chr4.3:54037828-54037847 | None:intergenic | 25.0% |
| !! | AATCTTCATTTTGTAGTTGT+TGG | - | chr4.3:54036513-54036532 | MS.gene45334:intron | 25.0% |
| !! | AGAAACATATACTTGATTTG+AGG | - | chr4.3:54037850-54037869 | MS.gene45334:intron | 25.0% |
| !! | GAAACATATACTTGATTTGA+GGG | - | chr4.3:54037851-54037870 | MS.gene45334:intron | 25.0% |
| !! | TTATTTGAGATTAGCAAAAC+CGG | + | chr4.3:54036800-54036819 | None:intergenic | 25.0% |
| AGATGGTATAGAAGTTCAAA+CGG | - | chr4.3:54036970-54036989 | MS.gene45334:CDS | 30.0% | |
| ATTTCTCCATTTCTCTACAA+TGG | + | chr4.3:54035918-54035937 | None:intergenic | 30.0% | |
| TAAAGCAATCCAAGCTTATA+TGG | + | chr4.3:54037332-54037351 | None:intergenic | 30.0% | |
| TACAATGAAGGTGAAATCAA+CGG | - | chr4.3:54037027-54037046 | MS.gene45334:intron | 30.0% | |
| TAGAGACATTGCAATATGTA+GGG | - | chr4.3:54035598-54035617 | MS.gene45334:CDS | 30.0% | |
| TATTGATGAACAATCACCAA+TGG | + | chr4.3:54037426-54037445 | None:intergenic | 30.0% | |
| TCCATAAAATCCCTTATAAC+TGG | + | chr4.3:54037112-54037131 | None:intergenic | 30.0% | |
| TGACAAGGAAATTACAATGA+AGG | - | chr4.3:54037015-54037034 | MS.gene45334:CDS | 30.0% | |
| TGTAATAGATTGTCTTGAGA+AGG | - | chr4.3:54036452-54036471 | MS.gene45334:CDS | 30.0% | |
| TTCGAATTCTTCTACAGTTA+AGG | + | chr4.3:54037775-54037794 | None:intergenic | 30.0% | |
| TTCTACTCTTCCAGTTATAA+GGG | - | chr4.3:54037099-54037118 | MS.gene45334:intron | 30.0% | |
| TTGGATAAAATCATGCAGTT+CGG | + | chr4.3:54036568-54036587 | None:intergenic | 30.0% | |
| TTTACGAAAGAGACTGTAAA+AGG | + | chr4.3:54037479-54037498 | None:intergenic | 30.0% | |
| TTTCTACTCTTCCAGTTATA+AGG | - | chr4.3:54037098-54037117 | MS.gene45334:intron | 30.0% | |
| TTTCTCCATTTCTCTACAAT+GGG | + | chr4.3:54035917-54035936 | None:intergenic | 30.0% | |
| ! | AAGATGATATTTTCTCCGAA+GGG | + | chr4.3:54036894-54036913 | None:intergenic | 30.0% |
| ! | AATCTTTTATCTCTGCTTCT+AGG | - | chr4.3:54037701-54037720 | MS.gene45334:intron | 30.0% |
| ! | AGGGATTTTATGGAAGAAAT+TGG | - | chr4.3:54037118-54037137 | MS.gene45334:intron | 30.0% |
| ! | CCACCTTTTTAATGATGTTT+CGG | + | chr4.3:54035488-54035507 | None:intergenic | 30.0% |
| ! | CTTTTCTTTCATTTCCTTGT+GGG | + | chr4.3:54037890-54037909 | None:intergenic | 30.0% |
| ! | GTAAATACTTTTAATACCCC+TGG | - | chr4.3:54036077-54036096 | MS.gene45334:CDS | 30.0% |
| ! | TCCAGTTATAAGGGATTTTA+TGG | - | chr4.3:54037108-54037127 | MS.gene45334:intron | 30.0% |
| ! | TCTTTTCTTTCATTTCCTTG+TGG | + | chr4.3:54037891-54037910 | None:intergenic | 30.0% |
| ! | TGGAGAAATAAAATTTTGGG+AGG | - | chr4.3:54035929-54035948 | MS.gene45334:intron | 30.0% |
| ! | TTTTATGGAAGAAATTGGTC+AGG | - | chr4.3:54037123-54037142 | MS.gene45334:intron | 30.0% |
| ! | TTTTTAATGATGTTTCGGAC+CGG | + | chr4.3:54035483-54035502 | None:intergenic | 30.0% |
| ! | TTTTTCCCATTGTAGAGAAA+TGG | - | chr4.3:54035909-54035928 | MS.gene45334:intron | 30.0% |
| !! | TAAAGCTTTTTCCCAATATG+TGG | + | chr4.3:54036220-54036239 | None:intergenic | 30.0% |
| !!! | AGACTACTTTTTCTGTCAAA+TGG | - | chr4.3:54038035-54038054 | MS.gene45334:CDS | 30.0% |
| !!! | CATTTTAGTTATAGTGTGAC+CGG | - | chr4.3:54036778-54036797 | MS.gene45334:intron | 30.0% |
| AATATGTGGAGTCGGTTAAA+TGG | + | chr4.3:54036206-54036225 | None:intergenic | 35.0% | |
| AATGAGGCTAATTGCTTCAT+CGG | + | chr4.3:54037570-54037589 | None:intergenic | 35.0% | |
| ACAATGAAGGTGAAATCAAC+GGG | - | chr4.3:54037028-54037047 | MS.gene45334:intron | 35.0% | |
| ACCCCTTAAGATGAATAACT+GGG | + | chr4.3:54035647-54035666 | None:intergenic | 35.0% | |
| AGAAGAATTCGAAGAAGTGA+TGG | - | chr4.3:54037782-54037801 | MS.gene45334:intron | 35.0% | |
| AGAGACATTGCAATATGTAG+GGG | - | chr4.3:54035599-54035618 | MS.gene45334:CDS | 35.0% | |
| ATTGAAAACTTAGTGGGAAG+TGG | - | chr4.3:54036005-54036024 | MS.gene45334:CDS | 35.0% | |
| CAGAAGACATGAAAACAGAT+TGG | + | chr4.3:54037186-54037205 | None:intergenic | 35.0% | |
| CAGACAAAAAGGTTGTTTGT+CGG | - | chr4.3:54035976-54035995 | MS.gene45334:intron | 35.0% | |
| CCGAAACATCATTAAAAAGG+TGG | - | chr4.3:54035485-54035504 | MS.gene45334:CDS | 35.0% | |
| GAGAAGAAGTTTACAAGAGA+TGG | - | chr4.3:54036953-54036972 | MS.gene45334:CDS | 35.0% | |
| GATGAATGGTTGAGAGTAAA+GGG | - | chr4.3:54037383-54037402 | MS.gene45334:CDS | 35.0% | |
| GATGGTATAGAAGTTCAAAC+GGG | - | chr4.3:54036971-54036990 | MS.gene45334:CDS | 35.0% | |
| GGGTGATGATCTTCAATATT+AGG | + | chr4.3:54035285-54035304 | None:intergenic | 35.0% | |
| GGTCCGAAACATCATTAAAA+AGG | - | chr4.3:54035482-54035501 | MS.gene45334:CDS | 35.0% | |
| GTAAATGCAAAGTAGTTACG+AGG | + | chr4.3:54035405-54035424 | None:intergenic | 35.0% | |
| GTAGAGACATTGCAATATGT+AGG | - | chr4.3:54035597-54035616 | MS.gene45334:CDS | 35.0% | |
| TCCCCAGTTATTCATCTTAA+GGG | - | chr4.3:54035642-54035661 | MS.gene45334:CDS | 35.0% | |
| TGAAAGATTCAAACACTGAC+CGG | + | chr4.3:54036842-54036861 | None:intergenic | 35.0% | |
| TGATGAATGGTTGAGAGTAA+AGG | - | chr4.3:54037382-54037401 | MS.gene45334:CDS | 35.0% | |
| TGCTTTATGTGCAGACTAAA+AGG | - | chr4.3:54037345-54037364 | MS.gene45334:CDS | 35.0% | |
| TGGAACTAGCATAATCCTAA+AGG | + | chr4.3:54037243-54037262 | None:intergenic | 35.0% | |
| TGTCATCAACACTCATAACA+CGG | + | chr4.3:54037000-54037019 | None:intergenic | 35.0% | |
| TTCCCCAGTTATTCATCTTA+AGG | - | chr4.3:54035641-54035660 | MS.gene45334:CDS | 35.0% | |
| TTCTCTGGATTATGACTTCT+TGG | - | chr4.3:54036034-54036053 | MS.gene45334:CDS | 35.0% | |
| TTCTTCTACAGTTAAGGTAC+CGG | + | chr4.3:54037769-54037788 | None:intergenic | 35.0% | |
| TTGACTTTATCTTGAACGGT+TGG | + | chr4.3:54036612-54036631 | None:intergenic | 35.0% | |
| ! | ATCTGTTTTCATGTCTTCTG+CGG | - | chr4.3:54037186-54037205 | MS.gene45334:intron | 35.0% |
| ! | ATTTAACCGACTCCACATAT+TGG | - | chr4.3:54036205-54036224 | MS.gene45334:intron | 35.0% |
| ! | CTTCATTTTGTAGTTGTTGG+AGG | - | chr4.3:54036516-54036535 | MS.gene45334:intron | 35.0% |
| ! | GAAGATGATATTTTCTCCGA+AGG | + | chr4.3:54036895-54036914 | None:intergenic | 35.0% |
| ! | TTGGGAAAAAGCTTTAGTTG+TGG | - | chr4.3:54036224-54036243 | MS.gene45334:intron | 35.0% |
| ! | TTTAACCGACTCCACATATT+GGG | - | chr4.3:54036206-54036225 | MS.gene45334:intron | 35.0% |
| ! | TTTTTCCCAATATGTGGAGT+CGG | + | chr4.3:54036214-54036233 | None:intergenic | 35.0% |
| !! | CAACATATTGGATTAGTTGC+AGG | + | chr4.3:54036383-54036402 | None:intergenic | 35.0% |
| !! | TAATCACTTATAGAGTGTCG+AGG | - | chr4.3:54036407-54036426 | MS.gene45334:CDS | 35.0% |
| !! | TGTTATGAGTGTTGATGACA+AGG | - | chr4.3:54037000-54037019 | MS.gene45334:CDS | 35.0% |
| !! | TTTTAATACCCCTGGTGTTA+AGG | - | chr4.3:54036085-54036104 | MS.gene45334:intron | 35.0% |
| !!! | TTTTTGGTTAAGCAGCTTAG+TGG | + | chr4.3:54035680-54035699 | None:intergenic | 35.0% |
| AAAAAGAAAGTCGTGGTCCT+TGG | - | chr4.3:54035309-54035328 | MS.gene45334:CDS | 40.0% | |
| AATGACTTCGTGTCTTGAGA+TGG | - | chr4.3:54035794-54035813 | MS.gene45334:intron | 40.0% | |
| ACAAGTGACACTCGGTAATA+AGG | + | chr4.3:54035430-54035449 | None:intergenic | 40.0% | |
| AGACATAGAAGGGTTTAAGC+TGG | - | chr4.3:54037914-54037933 | MS.gene45334:intron | 40.0% | |
| AGTTTCCTTAAGGGTTTGGA+TGG | - | chr4.3:54035351-54035370 | MS.gene45334:intron | 40.0% | |
| ATCCAAACCCTTAAGGAAAC+TGG | + | chr4.3:54035352-54035371 | None:intergenic | 40.0% | |
| ATGAACCATCCAAACCCTTA+AGG | + | chr4.3:54035359-54035378 | None:intergenic | 40.0% | |
| CAAGTGACACTCGGTAATAA+GGG | + | chr4.3:54035429-54035448 | None:intergenic | 40.0% | |
| CACCCCTTAAGATGAATAAC+TGG | + | chr4.3:54035648-54035667 | None:intergenic | 40.0% | |
| CCCCAGTTATTCATCTTAAG+GGG | - | chr4.3:54035643-54035662 | MS.gene45334:CDS | 40.0% | |
| CCCCTTAAGATGAATAACTG+GGG | + | chr4.3:54035646-54035665 | None:intergenic | 40.0% | |
| CCTTTGTTAAACTCACCCTT+CGG | - | chr4.3:54036876-54036895 | MS.gene45334:CDS | 40.0% | |
| GACCAATCATTATGCAAGTC+CGG | - | chr4.3:54036820-54036839 | MS.gene45334:CDS | 40.0% | |
| GAGACTGTAAAAGGCTTAAG+AGG | + | chr4.3:54037470-54037489 | None:intergenic | 40.0% | |
| GCTGCAGACAAAAATAACTC+CGG | - | chr4.3:54037747-54037766 | MS.gene45334:intron | 40.0% | |
| TACCAGTTTCCTTAAGGGTT+TGG | - | chr4.3:54035347-54035366 | MS.gene45334:intron | 40.0% | |
| TCGATCAGTAAGTGAATGCT+TGG | - | chr4.3:54038006-54038025 | MS.gene45334:CDS | 40.0% | |
| TGTGAAGATGTGTTTGCCAT+TGG | - | chr4.3:54037407-54037426 | MS.gene45334:CDS | 40.0% | |
| TTTCAGGATCTGGACATCAT+CGG | - | chr4.3:54038183-54038202 | MS.gene45334:CDS | 40.0% | |
| ! | ATGTACTGGCAACTGATGAA+TGG | - | chr4.3:54037369-54037388 | MS.gene45334:CDS | 40.0% |
| ! | CATTTTGTAGTTGTTGGAGG+AGG | - | chr4.3:54036519-54036538 | MS.gene45334:intron | 40.0% |
| ! | TACTTGATTTGAGGGTTCTG+TGG | - | chr4.3:54037859-54037878 | MS.gene45334:intron | 40.0% |
| !! | CTGCTTCTAGGATGATATCA+TGG | - | chr4.3:54037713-54037732 | MS.gene45334:intron | 40.0% |
| !! | TATTACCGAGTGTCACTTGT+GGG | - | chr4.3:54035430-54035449 | MS.gene45334:intron | 40.0% |
| !! | TTATTACCGAGTGTCACTTG+TGG | - | chr4.3:54035429-54035448 | MS.gene45334:intron | 40.0% |
| !!! | ACCACGACTTTCTTTTTTCG+GGG | + | chr4.3:54035306-54035325 | None:intergenic | 40.0% |
| !!! | GACCACGACTTTCTTTTTTC+GGG | + | chr4.3:54035307-54035326 | None:intergenic | 40.0% |
| !!! | GGACCACGACTTTCTTTTTT+CGG | + | chr4.3:54035308-54035327 | None:intergenic | 40.0% |
| !!! | GGAGAACTGTCATTTTCTGA+AGG | - | chr4.3:54036106-54036125 | MS.gene45334:intron | 40.0% |
| ACAGTTCTCCTTAACACCAG+GGG | + | chr4.3:54036096-54036115 | None:intergenic | 45.0% | |
| AGGGTGAGTTTAACAAAGGC+AGG | + | chr4.3:54036875-54036894 | None:intergenic | 45.0% | |
| ATATAGGTTGCTGCGCAACA+AGG | - | chr4.3:54038092-54038111 | MS.gene45334:CDS | 45.0% | |
| ATGAATAACTGGGGAATCCC+GGG | + | chr4.3:54035637-54035656 | None:intergenic | 45.0% | |
| ATTCATACCTGTGCAGTTGC+TGG | + | chr4.3:54037975-54037994 | None:intergenic | 45.0% | |
| ATTGCAATATGTAGGGGCCA+GGG | - | chr4.3:54035605-54035624 | MS.gene45334:CDS | 45.0% | |
| CCGAAGGGTGAGTTTAACAA+AGG | + | chr4.3:54036879-54036898 | None:intergenic | 45.0% | |
| CTGGGAATCTGCAACAGAAA+GGG | + | chr4.3:54037940-54037959 | None:intergenic | 45.0% | |
| GACAGTTCTCCTTAACACCA+GGG | + | chr4.3:54036097-54036116 | None:intergenic | 45.0% | |
| GACCAGATAACCAATCCATG+GGG | + | chr4.3:54037070-54037089 | None:intergenic | 45.0% | |
| GACCGGACTTGCATAATGAT+TGG | + | chr4.3:54036825-54036844 | None:intergenic | 45.0% | |
| GACTTCTTGGTTGTAGCAGT+AGG | - | chr4.3:54036047-54036066 | MS.gene45334:CDS | 45.0% | |
| GATCGATGCTGCAGACAAAA+AGG | - | chr4.3:54035965-54035984 | MS.gene45334:intron | 45.0% | |
| GATGAATAACTGGGGAATCC+CGG | + | chr4.3:54035638-54035657 | None:intergenic | 45.0% | |
| GCTGCAAATTCAACACCAGT+TGG | + | chr4.3:54036546-54036565 | None:intergenic | 45.0% | |
| GCTGCTACCAGTTTCCTTAA+GGG | - | chr4.3:54035342-54035361 | MS.gene45334:intron | 45.0% | |
| GGACCAGATAACCAATCCAT+GGG | + | chr4.3:54037071-54037090 | None:intergenic | 45.0% | |
| GTCAATCTGAAGAGGAGCAA+AGG | - | chr4.3:54036487-54036506 | MS.gene45334:CDS | 45.0% | |
| TCTTCCGAGTCAATCTGAAG+AGG | - | chr4.3:54036479-54036498 | MS.gene45334:CDS | 45.0% | |
| TGACAGTTCTCCTTAACACC+AGG | + | chr4.3:54036098-54036117 | None:intergenic | 45.0% | |
| TGCTCCTCTTCAGATTGACT+CGG | + | chr4.3:54036486-54036505 | None:intergenic | 45.0% | |
| TGGAAGAGTAGAAATGCCAG+TGG | + | chr4.3:54037092-54037111 | None:intergenic | 45.0% | |
| TGGACCAGATAACCAATCCA+TGG | + | chr4.3:54037072-54037091 | None:intergenic | 45.0% | |
| ! | CGCGATTAAAGCAACTTGCT+AGG | + | chr4.3:54038124-54038143 | None:intergenic | 45.0% |
| ! | GCAGACTAAAAGGCATGTAC+TGG | - | chr4.3:54037355-54037374 | MS.gene45334:CDS | 45.0% |
| ! | GGGAAGTGGTGAATTTTCTC+TGG | - | chr4.3:54036019-54036038 | MS.gene45334:CDS | 45.0% |
| !! | GATACTGAAGAGCATCCAGA+AGG | - | chr4.3:54038149-54038168 | MS.gene45334:CDS | 45.0% |
| !!! | CCACGACTTTCTTTTTTCGG+GGG | + | chr4.3:54035305-54035324 | None:intergenic | 45.0% |
| AAAGTCGTGGTCCTTGGAAC+TGG | - | chr4.3:54035315-54035334 | MS.gene45334:CDS | 50.0% | |
| ACTGACCCACAAGTGACACT+CGG | + | chr4.3:54035438-54035457 | None:intergenic | 50.0% | |
| ATCGGAGATTCCTAGCAGGA+TGG | + | chr4.3:54037552-54037571 | None:intergenic | 50.0% | |
| CATTGCAATATGTAGGGGCC+AGG | - | chr4.3:54035604-54035623 | MS.gene45334:CDS | 50.0% | |
| CCAACTGAGCTATGCTCACT+AGG | + | chr4.3:54035578-54035597 | None:intergenic | 50.0% | |
| CCAGATCCTGAAAATCGTCG+AGG | + | chr4.3:54038176-54038195 | None:intergenic | 50.0% | |
| CCCCCGAAAAAAGAAAGTCG+TGG | - | chr4.3:54035302-54035321 | MS.gene45334:CDS | 50.0% | |
| CCTAGTGAGCATAGCTCAGT+TGG | - | chr4.3:54035575-54035594 | MS.gene45334:CDS | 50.0% | |
| CCTGGGAATCTGCAACAGAA+AGG | + | chr4.3:54037941-54037960 | None:intergenic | 50.0% | |
| CCTTTCTGTTGCAGATTCCC+AGG | - | chr4.3:54037938-54037957 | MS.gene45334:intron | 50.0% | |
| CTTCATCGGAGATTCCTAGC+AGG | + | chr4.3:54037556-54037575 | None:intergenic | 50.0% | |
| CTTGTGGGTCAGTTGAAGCA+CGG | - | chr4.3:54035445-54035464 | MS.gene45334:intron | 50.0% | |
| GAAAATCGTCGAGGTCCTTC+TGG | + | chr4.3:54038167-54038186 | None:intergenic | 50.0% | |
| GAAGGTGAAATCAACGGGAG+CGG | - | chr4.3:54037033-54037052 | MS.gene45334:intron | 50.0% | |
| GGCTGCTACCAGTTTCCTTA+AGG | - | chr4.3:54035341-54035360 | MS.gene45334:intron | 50.0% | |
| TGCTGGAAGAGTCTTCACCT+GGG | + | chr4.3:54037958-54037977 | None:intergenic | 50.0% | |
| TTGCTGGAAGAGTCTTCACC+TGG | + | chr4.3:54037959-54037978 | None:intergenic | 50.0% | |
| ! | GAAGGACCTCGACGATTTTC+AGG | - | chr4.3:54038167-54038186 | MS.gene45334:CDS | 50.0% |
| !! | ATCATCGGTTTCGTCCCTTC+CGG | - | chr4.3:54038198-54038217 | MS.gene45334:CDS | 50.0% |
| !! | CCTCGACGATTTTCAGGATC+TGG | - | chr4.3:54038173-54038192 | MS.gene45334:CDS | 50.0% |
| !! | GGATTGGTTATCTGGTCCAC+TGG | - | chr4.3:54037073-54037092 | MS.gene45334:intron | 50.0% |
| !! | TGCCCCATGGATTGGTTATC+TGG | - | chr4.3:54037065-54037084 | MS.gene45334:intron | 50.0% |
| ACGGACTTGACCATCCTGCT+AGG | - | chr4.3:54037539-54037558 | MS.gene45334:intron | 55.0% | |
| CGTGGTCCTTGGAACTGGAT+GGG | - | chr4.3:54035320-54035339 | MS.gene45334:CDS | 55.0% | |
| GACTCTTCCAGCAACTGCAC+AGG | - | chr4.3:54037965-54037984 | MS.gene45334:CDS | 55.0% | |
| GGTTTCGTCCCTTCCGGTAA+TGG | - | chr4.3:54038204-54038223 | MS.gene45334:CDS | 55.0% | |
| GTTCTGTGGAACGACCCACA+AGG | - | chr4.3:54037873-54037892 | MS.gene45334:intron | 55.0% | |
| GTTGTTGGAGGAGGTCCAAC+TGG | - | chr4.3:54036528-54036547 | MS.gene45334:intron | 55.0% | |
| TAGCAGCCCATCCAGTTCCA+AGG | + | chr4.3:54035329-54035348 | None:intergenic | 55.0% | |
| TCGTGGTCCTTGGAACTGGA+TGG | - | chr4.3:54035319-54035338 | MS.gene45334:CDS | 55.0% | |
| TTGCTCTGTGCCCCATGGAT+TGG | - | chr4.3:54037057-54037076 | MS.gene45334:intron | 55.0% | |
| !! | AGCACGGAGCATCGTAGAAC+CGG | - | chr4.3:54035461-54035480 | MS.gene45334:intron | 55.0% |
| GGAATCCCGGGTTCGAACCC+TGG | + | chr4.3:54035625-54035644 | None:intergenic | 65.0% | |
| TAGGGGCCAGGGTTCGAACC+CGG | - | chr4.3:54035616-54035635 | MS.gene45334:CDS | 65.0% | |
| ! | GCGGTTTGCTCTGTGCCCCA+TGG | - | chr4.3:54037052-54037071 | MS.gene45334:intron | 65.0% |
| AGGGGCCAGGGTTCGAACCC+GGG | - | chr4.3:54035617-54035636 | MS.gene45334:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 54035233 | 54038223 | 54035233 | ID=MS.gene45334 |
| chr4.3 | mRNA | 54035233 | 54038223 | 54035233 | ID=MS.gene45334.t1;Parent=MS.gene45334 |
| chr4.3 | exon | 54037953 | 54038223 | 54037953 | ID=MS.gene45334.t1.exon1;Parent=MS.gene45334.t1 |
| chr4.3 | CDS | 54037953 | 54038223 | 54037953 | ID=cds.MS.gene45334.t1;Parent=MS.gene45334.t1 |
| chr4.3 | exon | 54037329 | 54037532 | 54037329 | ID=MS.gene45334.t1.exon2;Parent=MS.gene45334.t1 |
| chr4.3 | CDS | 54037329 | 54037532 | 54037329 | ID=cds.MS.gene45334.t1;Parent=MS.gene45334.t1 |
| chr4.3 | exon | 54036786 | 54037036 | 54036786 | ID=MS.gene45334.t1.exon3;Parent=MS.gene45334.t1 |
| chr4.3 | CDS | 54036786 | 54037036 | 54036786 | ID=cds.MS.gene45334.t1;Parent=MS.gene45334.t1 |
| chr4.3 | exon | 54036312 | 54036531 | 54036312 | ID=MS.gene45334.t1.exon4;Parent=MS.gene45334.t1 |
| chr4.3 | CDS | 54036312 | 54036531 | 54036312 | ID=cds.MS.gene45334.t1;Parent=MS.gene45334.t1 |
| chr4.3 | exon | 54035993 | 54036097 | 54035993 | ID=MS.gene45334.t1.exon5;Parent=MS.gene45334.t1 |
| chr4.3 | CDS | 54035993 | 54036097 | 54035993 | ID=cds.MS.gene45334.t1;Parent=MS.gene45334.t1 |
| chr4.3 | exon | 54035470 | 54035733 | 54035470 | ID=MS.gene45334.t1.exon6;Parent=MS.gene45334.t1 |
| chr4.3 | CDS | 54035470 | 54035733 | 54035470 | ID=cds.MS.gene45334.t1;Parent=MS.gene45334.t1 |
| chr4.3 | exon | 54035233 | 54035358 | 54035233 | ID=MS.gene45334.t1.exon7;Parent=MS.gene45334.t1 |
| chr4.3 | CDS | 54035233 | 54035358 | 54035233 | ID=cds.MS.gene45334.t1;Parent=MS.gene45334.t1 |
| Gene Sequence |
| Protein sequence |
