Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45593.t1 | XP_013459414.1 | 78 | 363 | 72 | 3 | 6 | 365 | 204 | 561 | 6.40E-126 | 460.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45593.t1 | Q9LKL2 | 38.4 | 375 | 189 | 13 | 17 | 361 | 230 | 592 | 2.5e-30 | 134.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45593.t1 | A0A072V5J5 | 78.0 | 363 | 72 | 3 | 6 | 365 | 204 | 561 | 4.6e-126 | 460.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene45593.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050702 | MS.gene45593 | -0.867084 | 1.78E-65 | -1.69E-46 |
| MS.gene052224 | MS.gene45593 | -0.849233 | 3.69E-60 | -1.69E-46 |
| MS.gene053401 | MS.gene45593 | 0.859975 | 2.85E-63 | -1.69E-46 |
| MS.gene053509 | MS.gene45593 | 0.809394 | 1.93E-50 | -1.69E-46 |
| MS.gene056338 | MS.gene45593 | 0.815562 | 8.68E-52 | -1.69E-46 |
| MS.gene058551 | MS.gene45593 | 0.809226 | 2.10E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45593.t1 | MTR_3g037390 | 87.328 | 363 | 38 | 3 | 6 | 365 | 204 | 561 | 0.0 | 655 |
| MS.gene45593.t1 | MTR_3g037390 | 87.328 | 363 | 38 | 3 | 6 | 365 | 100 | 457 | 0.0 | 653 |
| MS.gene45593.t1 | MTR_4g108880 | 56.150 | 374 | 116 | 7 | 6 | 361 | 221 | 564 | 8.51e-133 | 392 |
| MS.gene45593.t1 | MTR_4g061360 | 68.750 | 48 | 15 | 0 | 298 | 345 | 717 | 764 | 9.24e-16 | 79.3 |
| MS.gene45593.t1 | MTR_7g118260 | 60.000 | 50 | 20 | 0 | 298 | 347 | 367 | 416 | 5.20e-14 | 73.2 |
| MS.gene45593.t1 | MTR_7g118260 | 60.000 | 50 | 20 | 0 | 298 | 347 | 451 | 500 | 5.91e-14 | 73.2 |
| MS.gene45593.t1 | MTR_7g118260 | 60.000 | 50 | 20 | 0 | 298 | 347 | 537 | 586 | 1.04e-13 | 72.8 |
| MS.gene45593.t1 | MTR_7g118260 | 60.000 | 50 | 20 | 0 | 298 | 347 | 500 | 549 | 1.22e-13 | 72.4 |
| MS.gene45593.t1 | MTR_1g067110 | 61.404 | 57 | 19 | 1 | 289 | 342 | 513 | 569 | 4.94e-13 | 70.5 |
| MS.gene45593.t1 | MTR_3g092780 | 68.889 | 45 | 14 | 0 | 302 | 346 | 590 | 634 | 5.49e-13 | 70.5 |
| MS.gene45593.t1 | MTR_3g092780 | 68.889 | 45 | 14 | 0 | 302 | 346 | 630 | 674 | 5.52e-13 | 70.5 |
| MS.gene45593.t1 | MTR_3g092780 | 68.889 | 45 | 14 | 0 | 302 | 346 | 631 | 675 | 5.52e-13 | 70.5 |
| MS.gene45593.t1 | MTR_3g092780 | 68.889 | 45 | 14 | 0 | 302 | 346 | 589 | 633 | 5.64e-13 | 70.5 |
| MS.gene45593.t1 | MTR_1g067110 | 61.404 | 57 | 19 | 1 | 289 | 342 | 678 | 734 | 6.77e-13 | 70.5 |
| MS.gene45593.t1 | MTR_4g093730 | 55.357 | 56 | 25 | 0 | 288 | 343 | 94 | 149 | 9.10e-13 | 68.9 |
| MS.gene45593.t1 | MTR_8g024260 | 66.667 | 45 | 15 | 0 | 301 | 345 | 583 | 627 | 2.93e-12 | 68.2 |
| MS.gene45593.t1 | MTR_3g100040 | 57.143 | 49 | 21 | 0 | 294 | 342 | 19 | 67 | 5.53e-12 | 65.9 |
| MS.gene45593.t1 | MTR_3g100040 | 53.704 | 54 | 25 | 0 | 289 | 342 | 118 | 171 | 6.52e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45593.t1 | AT5G61380 | 37.629 | 388 | 178 | 17 | 17 | 363 | 230 | 594 | 1.03e-52 | 184 |
| MS.gene45593.t1 | AT5G02810 | 63.793 | 58 | 21 | 0 | 294 | 351 | 517 | 574 | 1.82e-16 | 81.3 |
| MS.gene45593.t1 | AT5G02810 | 63.793 | 58 | 21 | 0 | 294 | 351 | 661 | 718 | 3.00e-16 | 80.9 |
| MS.gene45593.t1 | AT2G46670 | 71.111 | 45 | 13 | 0 | 302 | 346 | 132 | 176 | 4.51e-16 | 75.9 |
| MS.gene45593.t1 | AT2G46790 | 69.565 | 46 | 14 | 0 | 301 | 346 | 259 | 304 | 2.00e-15 | 76.6 |
| MS.gene45593.t1 | AT2G46790 | 69.565 | 46 | 14 | 0 | 301 | 346 | 259 | 304 | 2.00e-15 | 76.6 |
| MS.gene45593.t1 | AT2G46790 | 69.565 | 46 | 14 | 0 | 301 | 346 | 299 | 344 | 4.24e-15 | 76.3 |
| MS.gene45593.t1 | AT2G46790 | 69.565 | 46 | 14 | 0 | 301 | 346 | 416 | 461 | 6.29e-15 | 76.3 |
| MS.gene45593.t1 | AT5G60100 | 65.217 | 46 | 16 | 0 | 301 | 346 | 441 | 486 | 3.48e-13 | 70.9 |
| MS.gene45593.t1 | AT5G60100 | 65.217 | 46 | 16 | 0 | 301 | 346 | 441 | 486 | 3.48e-13 | 70.9 |
| MS.gene45593.t1 | AT5G60100 | 65.217 | 46 | 16 | 0 | 301 | 346 | 441 | 486 | 3.48e-13 | 70.9 |
| MS.gene45593.t1 | AT5G24470 | 55.357 | 56 | 25 | 0 | 290 | 345 | 497 | 552 | 3.98e-13 | 70.9 |
| MS.gene45593.t1 | AT5G60100 | 68.182 | 44 | 14 | 0 | 301 | 344 | 468 | 511 | 4.25e-13 | 70.9 |
Find 83 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATATTCATTGGGTAATA+GGG | 0.232593 | 3.4:-29927837 | None:intergenic |
| GCACATATTCATTGGGTAAT+AGG | 0.254453 | 3.4:-29927838 | None:intergenic |
| ATCCTTAGTTCGCTCTTCTT+TGG | 0.263156 | 3.4:-29927174 | None:intergenic |
| GAACAATAGGTCCCATTTCT+TGG | 0.266361 | 3.4:-29927528 | None:intergenic |
| GGACAATGAACCCCATTTCT+TGG | 0.284413 | 3.4:-29927609 | None:intergenic |
| TTGTACTCCACCTGCATCTT+TGG | 0.287125 | 3.4:+29927446 | MS.gene45593:CDS |
| ACTCCCGATGACAAATAATA+TGG | 0.320119 | 3.4:-29927672 | None:intergenic |
| GGTTGTAAGCACATATTCAT+TGG | 0.352891 | 3.4:-29927846 | None:intergenic |
| AGTCTTATACATCCAAGAAA+TGG | 0.355720 | 3.4:+29927516 | MS.gene45593:CDS |
| CAACCAGGTCAGATTCCTTC+AGG | 0.363330 | 3.4:+29927864 | MS.gene45593:CDS |
| CAAAATTAAGTAAAGTTGAT+AGG | 0.368608 | 3.4:+29927922 | MS.gene45593:CDS |
| GCGAACTAAGGATTGGGGTT+GGG | 0.374057 | 3.4:+29927184 | MS.gene45593:CDS |
| CGAACTAAGGATTGGGGTTG+GGG | 0.375308 | 3.4:+29927185 | MS.gene45593:CDS |
| CATTCTGATGCATGATCATC+TGG | 0.375477 | 3.4:-29926283 | None:intergenic |
| TGTCTGATGCATCCAAGAAA+TGG | 0.381220 | 3.4:+29927597 | MS.gene45593:CDS |
| CAGCATGAACAATCCCTTCA+AGG | 0.386500 | 3.4:-29927257 | None:intergenic |
| GTCTGATGCATCCAAGAAAT+GGG | 0.388638 | 3.4:+29927598 | MS.gene45593:CDS |
| GGTGTTAATGTGGATCTTAA+TGG | 0.393979 | 3.4:+29928080 | MS.gene45593:CDS |
| TATCCATATTATTTGTCATC+GGG | 0.404835 | 3.4:+29927669 | MS.gene45593:CDS |
| CATATCGAGCTCAGAACAAT+AGG | 0.405798 | 3.4:-29927541 | None:intergenic |
| AGAAGAGCGAACTAAGGATT+GGG | 0.437707 | 3.4:+29927178 | MS.gene45593:CDS |
| ACCAGGTATACTATTGCTGC+TGG | 0.455033 | 3.4:-29927403 | None:intergenic |
| GTTGTAAGCACATATTCATT+GGG | 0.463517 | 3.4:-29927845 | None:intergenic |
| AACTTCCATCCTCACATGTA+AGG | 0.465807 | 3.4:-29927289 | None:intergenic |
| TCATTTACTCCATGGACATC+AGG | 0.468519 | 3.4:-29926310 | None:intergenic |
| TGATACATTTGCGCCGATGA+AGG | 0.476546 | 3.4:-29927711 | None:intergenic |
| CCCAGCAGCAATAGTATACC+TGG | 0.477013 | 3.4:+29927402 | MS.gene45593:CDS |
| CTCCAAAGAAGAGCGAACTA+AGG | 0.481928 | 3.4:+29927172 | MS.gene45593:CDS |
| ATTGAATATGATGAAAATGA+AGG | 0.483324 | 3.4:+29928116 | MS.gene45593:CDS |
| GTCTTATACATCCAAGAAAT+GGG | 0.483992 | 3.4:+29927517 | MS.gene45593:CDS |
| AAGAAGAGCGAACTAAGGAT+TGG | 0.487567 | 3.4:+29927177 | MS.gene45593:CDS |
| GGAGTAAATGATCAGCGAAC+AGG | 0.494921 | 3.4:+29926322 | MS.gene45593:CDS |
| ATGTTAGATCTTTCACGCTC+AGG | 0.497470 | 3.4:-29927630 | None:intergenic |
| CTCTCAATAGATAAAGAACC+AGG | 0.507067 | 3.4:-29927420 | None:intergenic |
| GGTCAGTCATGGCCATCCTT+CGG | 0.511134 | 3.4:+29927885 | MS.gene45593:CDS |
| TGTGAGGCTTCCAAAGATGC+AGG | 0.515634 | 3.4:-29927456 | None:intergenic |
| TCATGTTATGATGCCTTCAT+CGG | 0.517737 | 3.4:+29927698 | MS.gene45593:CDS |
| AGAAAATTAGGTATGTCAAT+CGG | 0.521151 | 3.4:+29928000 | MS.gene45593:CDS |
| CAGCATGATTCTGCAGGTCG+TGG | 0.521808 | 3.4:-29927743 | None:intergenic |
| TTCGCTGATCATTTACTCCA+TGG | 0.523141 | 3.4:-29926318 | None:intergenic |
| GACATCATTCCGGTGGTATG+AGG | 0.533530 | 3.4:-29927810 | None:intergenic |
| CATGAAGCATGTGCTCAACA+AGG | 0.536975 | 3.4:+29927315 | MS.gene45593:CDS |
| TTATCCATATTATTTGTCAT+CGG | 0.538736 | 3.4:+29927668 | MS.gene45593:CDS |
| TGCTAATGCTGATGCTGTTG+AGG | 0.539629 | 3.4:+29926255 | MS.gene45593:CDS |
| AGCGAACTAAGGATTGGGGT+TGG | 0.541428 | 3.4:+29927183 | MS.gene45593:CDS |
| ATAGGGGTAGGACATCATTC+CGG | 0.544576 | 3.4:-29927820 | None:intergenic |
| CCAGGTATACTATTGCTGCT+GGG | 0.549234 | 3.4:-29927402 | None:intergenic |
| TTAGCAATAGTAGACTGAAA+AGG | 0.549555 | 3.4:-29926238 | None:intergenic |
| ATGAATATGTGCTTACAACC+AGG | 0.553880 | 3.4:+29927849 | MS.gene45593:CDS |
| GAATGTCAGCCTGATGTCCA+TGG | 0.557310 | 3.4:+29926301 | MS.gene45593:CDS |
| TTGAATATGATGAAAATGAA+GGG | 0.559631 | 3.4:+29928117 | MS.gene45593:CDS |
| ATGTACCAGCATGATTCTGC+AGG | 0.560138 | 3.4:-29927749 | None:intergenic |
| CACGACCTGCAGAATCATGC+TGG | 0.560739 | 3.4:+29927744 | MS.gene45593:CDS |
| TCGGATGAACTTCCGAAGGA+TGG | 0.565075 | 3.4:-29927897 | None:intergenic |
| TGAAAGACGGCCTCGTGTGA+GGG | 0.569464 | 3.4:+29928034 | MS.gene45593:CDS |
| TGCTTCGGATGAACTTCCGA+AGG | 0.577350 | 3.4:-29927901 | None:intergenic |
| ATTCATTGGGTAATAGGGGT+AGG | 0.578636 | 3.4:-29927832 | None:intergenic |
| AGATTCCTTCAGGTCAGTCA+TGG | 0.579147 | 3.4:+29927874 | MS.gene45593:CDS |
| CAGTTTGTCAGTAAGATGAA+TGG | 0.579522 | 3.4:+29928059 | MS.gene45593:CDS |
| CAGGTATACTATTGCTGCTG+GGG | 0.581806 | 3.4:-29927401 | None:intergenic |
| GGAAACAACTTGCTGAAAGA+CGG | 0.584344 | 3.4:+29928021 | MS.gene45593:CDS |
| CTGAAAGACGGCCTCGTGTG+AGG | 0.586756 | 3.4:+29928033 | MS.gene45593:CDS |
| GAAAGACGGCCTCGTGTGAG+GGG | 0.590286 | 3.4:+29928035 | MS.gene45593:CDS |
| TGCCGCCTTACATGTGAGGA+TGG | 0.593042 | 3.4:+29927284 | MS.gene45593:CDS |
| GATGGCCATGACTGACCTGA+AGG | 0.597115 | 3.4:-29927879 | None:intergenic |
| ACATATTCATTGGGTAATAG+GGG | 0.603859 | 3.4:-29927836 | None:intergenic |
| ATGAAGCATGTGCTCAACAA+GGG | 0.604325 | 3.4:+29927316 | MS.gene45593:CDS |
| TCATCATATTCAATGGAAGG+AGG | 0.605016 | 3.4:-29928107 | None:intergenic |
| TAAGATGAATGGTGTTAATG+TGG | 0.608624 | 3.4:+29928070 | MS.gene45593:CDS |
| CAAGGCGGTCCTCATACCAC+CGG | 0.623009 | 3.4:+29927801 | MS.gene45593:CDS |
| CACTACAATCATGTTCCACA+AGG | 0.630620 | 3.4:+29927783 | MS.gene45593:CDS |
| GTGGTATGAGGACCGCCTTG+TGG | 0.638168 | 3.4:-29927798 | None:intergenic |
| TGACCTGAAGGAATCTGACC+TGG | 0.642802 | 3.4:-29927867 | None:intergenic |
| GAGGCTTCCAAAGATGCAGG+TGG | 0.655405 | 3.4:-29927453 | None:intergenic |
| TTCCATCCTCACATGTAAGG+CGG | 0.658020 | 3.4:-29927286 | None:intergenic |
| ACAAACTGTCCCCTCACACG+AGG | 0.662346 | 3.4:-29928044 | None:intergenic |
| TGAAGCATGTGCTCAACAAG+GGG | 0.671878 | 3.4:+29927317 | MS.gene45593:CDS |
| TACAATCATGTTCCACAAGG+CGG | 0.678482 | 3.4:+29927786 | MS.gene45593:CDS |
| GGGGTAGGACATCATTCCGG+TGG | 0.679136 | 3.4:-29927817 | None:intergenic |
| TCTGATGCATCCAAGAAATG+GGG | 0.684504 | 3.4:+29927599 | MS.gene45593:CDS |
| TCTGATGCATGATCATCTGG+AGG | 0.693536 | 3.4:-29926280 | None:intergenic |
| GAAGAGCGAACTAAGGATTG+GGG | 0.699832 | 3.4:+29927179 | MS.gene45593:CDS |
| ACAATGCCGCCTTACATGTG+AGG | 0.719839 | 3.4:+29927280 | MS.gene45593:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAATAATGATTTATTT+TGG | + | chr3.4:29926733-29926752 | MS.gene45593:intron | 10.0% |
| !!! | TCATTATTTGTTTAATTTTA+TGG | - | chr3.4:29926726-29926745 | None:intergenic | 10.0% |
| !! | AAAAAATCTGTTGAAAATTT+GGG | - | chr3.4:29927039-29927058 | None:intergenic | 15.0% |
| !! | TAAAAAATCTGTTGAAAATT+TGG | - | chr3.4:29927040-29927059 | None:intergenic | 15.0% |
| !!! | AAATTTTCAACAGATTTTTT+AGG | + | chr3.4:29927039-29927058 | MS.gene45593:intron | 15.0% |
| !! | AAAAATCTGTTGAAAATTTG+GGG | - | chr3.4:29927038-29927057 | None:intergenic | 20.0% |
| !! | ATTGAATATGATGAAAATGA+AGG | + | chr3.4:29928116-29928135 | MS.gene45593:CDS | 20.0% |
| !! | TTATCCATATTATTTGTCAT+CGG | + | chr3.4:29927668-29927687 | MS.gene45593:CDS | 20.0% |
| !! | TTGAATATGATGAAAATGAA+GGG | + | chr3.4:29928117-29928136 | MS.gene45593:CDS | 20.0% |
| !!! | AACTTTACTTAATTTTGCTT+CGG | - | chr3.4:29927919-29927938 | None:intergenic | 20.0% |
| !!! | CAAAATTAAGTAAAGTTGAT+AGG | + | chr3.4:29927922-29927941 | MS.gene45593:CDS | 20.0% |
| !!! | TTCATTTTCATCATATTCAA+TGG | - | chr3.4:29928117-29928136 | None:intergenic | 20.0% |
| ! | AGAAAATTAGGTATGTCAAT+CGG | + | chr3.4:29928000-29928019 | MS.gene45593:CDS | 25.0% |
| ! | AGATTAGAAAGTAGAAACTA+TGG | - | chr3.4:29926856-29926875 | None:intergenic | 25.0% |
| ! | ATGAAACAGAATTGCTTAAA+GGG | + | chr3.4:29926502-29926521 | MS.gene45593:intron | 25.0% |
| ! | ATGGAATTCAATAACTAGAA+TGG | - | chr3.4:29926707-29926726 | None:intergenic | 25.0% |
| ! | TATCCATATTATTTGTCATC+GGG | + | chr3.4:29927669-29927688 | MS.gene45593:CDS | 25.0% |
| ! | TCAGAGAGAACAATTAAAAA+TGG | - | chr3.4:29927113-29927132 | None:intergenic | 25.0% |
| ! | TGGAATTCAATAACTAGAAT+GGG | - | chr3.4:29926706-29926725 | None:intergenic | 25.0% |
| ! | TTCTACTTTCTAATCTGAAA+TGG | + | chr3.4:29926860-29926879 | MS.gene45593:intron | 25.0% |
| !! | AAGTTATATAGTGGAATTGA+TGG | + | chr3.4:29926406-29926425 | MS.gene45593:intron | 25.0% |
| !! | ATAAAATTTTATTCAGCCTC+AGG | - | chr3.4:29927066-29927085 | None:intergenic | 25.0% |
| !! | TATTTTCTCTTCTCTTAATC+CGG | + | chr3.4:29926633-29926652 | MS.gene45593:intron | 25.0% |
| !! | TTAGCATTGAAGTTATATAG+TGG | + | chr3.4:29926397-29926416 | MS.gene45593:intron | 25.0% |
| !! | TTTTCATCATATTCAATGGA+AGG | - | chr3.4:29928113-29928132 | None:intergenic | 25.0% |
| !!! | GCTGTTTTGATAAGAAAATT+AGG | + | chr3.4:29927988-29928007 | MS.gene45593:CDS | 25.0% |
| ACATAAATTGCCAAAAAGGT+GGG | - | chr3.4:29926773-29926792 | None:intergenic | 30.0% | |
| ACATATTCATTGGGTAATAG+GGG | - | chr3.4:29927839-29927858 | None:intergenic | 30.0% | |
| ACATGTAACTGAATTACTTG+TGG | + | chr3.4:29926811-29926830 | MS.gene45593:intron | 30.0% | |
| ATGCTAAAAAGAAACCTTGA+AGG | + | chr3.4:29927243-29927262 | MS.gene45593:CDS | 30.0% | |
| CACATATTCATTGGGTAATA+GGG | - | chr3.4:29927840-29927859 | None:intergenic | 30.0% | |
| CATGAAACAGAATTGCTTAA+AGG | + | chr3.4:29926501-29926520 | MS.gene45593:intron | 30.0% | |
| GTCTTATACATCCAAGAAAT+GGG | + | chr3.4:29927517-29927536 | MS.gene45593:CDS | 30.0% | |
| GTTGTAAGCACATATTCATT+GGG | - | chr3.4:29927848-29927867 | None:intergenic | 30.0% | |
| TGCTAAAAAGAAACCTTGAA+GGG | + | chr3.4:29927244-29927263 | MS.gene45593:CDS | 30.0% | |
| TTAGCAATAGTAGACTGAAA+AGG | - | chr3.4:29926241-29926260 | None:intergenic | 30.0% | |
| ! | AACAATACTTTGGAAGTAGT+TGG | - | chr3.4:29926676-29926695 | None:intergenic | 30.0% |
| ! | AGTCTTATACATCCAAGAAA+TGG | + | chr3.4:29927516-29927535 | MS.gene45593:CDS | 30.0% |
| ! | ATTTCCAACAAAATCCCTTT+TGG | - | chr3.4:29926893-29926912 | None:intergenic | 30.0% |
| ! | GCAAATTTTCTTCTTCGTAA+CGG | - | chr3.4:29927488-29927507 | None:intergenic | 30.0% |
| ! | TAAGATGAATGGTGTTAATG+TGG | + | chr3.4:29928070-29928089 | MS.gene45593:CDS | 30.0% |
| AAACAGAATTGCTTAAAGGG+AGG | + | chr3.4:29926505-29926524 | MS.gene45593:intron | 35.0% | |
| AACAGAATTGCTTAAAGGGA+GGG | + | chr3.4:29926506-29926525 | MS.gene45593:intron | 35.0% | |
| ACTCCCGATGACAAATAATA+TGG | - | chr3.4:29927675-29927694 | None:intergenic | 35.0% | |
| ATGAATATGTGCTTACAACC+AGG | + | chr3.4:29927849-29927868 | MS.gene45593:CDS | 35.0% | |
| CAGTTTGTCAGTAAGATGAA+TGG | + | chr3.4:29928059-29928078 | MS.gene45593:CDS | 35.0% | |
| CATAAATTGCCAAAAAGGTG+GGG | - | chr3.4:29926772-29926791 | None:intergenic | 35.0% | |
| CTAACTCATCCTTACAAAAC+CGG | - | chr3.4:29927014-29927033 | None:intergenic | 35.0% | |
| CTCTCAATAGATAAAGAACC+AGG | - | chr3.4:29927423-29927442 | None:intergenic | 35.0% | |
| GAAATGGCTTCAATCCAAAA+GGG | + | chr3.4:29926876-29926895 | MS.gene45593:intron | 35.0% | |
| GACATAAATTGCCAAAAAGG+TGG | - | chr3.4:29926774-29926793 | None:intergenic | 35.0% | |
| GATCTCGAAGTATGCAAAAA+TGG | + | chr3.4:29927345-29927364 | MS.gene45593:CDS | 35.0% | |
| GCACATATTCATTGGGTAAT+AGG | - | chr3.4:29927841-29927860 | None:intergenic | 35.0% | |
| GCAGACATAAATTGCCAAAA+AGG | - | chr3.4:29926777-29926796 | None:intergenic | 35.0% | |
| GCATCTCAAATGTCGTAATT+AGG | - | chr3.4:29926946-29926965 | None:intergenic | 35.0% | |
| GGGTTGTTCTAACAATACTT+TGG | - | chr3.4:29926686-29926705 | None:intergenic | 35.0% | |
| GGTGTTAATGTGGATCTTAA+TGG | + | chr3.4:29928080-29928099 | MS.gene45593:CDS | 35.0% | |
| GGTTGTAAGCACATATTCAT+TGG | - | chr3.4:29927849-29927868 | None:intergenic | 35.0% | |
| TAGCAAAATAGTTGGAAGGA+GGG | + | chr3.4:29926570-29926589 | MS.gene45593:intron | 35.0% | |
| TCATCATATTCAATGGAAGG+AGG | - | chr3.4:29928110-29928129 | None:intergenic | 35.0% | |
| TCATGTTATGATGCCTTCAT+CGG | + | chr3.4:29927698-29927717 | MS.gene45593:CDS | 35.0% | |
| TGAAATGGCTTCAATCCAAA+AGG | + | chr3.4:29926875-29926894 | MS.gene45593:intron | 35.0% | |
| ! | CAATCCAAAAGGGATTTTGT+TGG | + | chr3.4:29926886-29926905 | MS.gene45593:intron | 35.0% |
| !!! | AACAGATTTTTTAGGTCCTG+AGG | + | chr3.4:29927047-29927066 | MS.gene45593:intron | 35.0% |
| AACTTCCATCCTCACATGTA+AGG | - | chr3.4:29927292-29927311 | None:intergenic | 40.0% | |
| AAGAAGAGCGAACTAAGGAT+TGG | + | chr3.4:29927177-29927196 | MS.gene45593:CDS | 40.0% | |
| AATAATCCTCCCCAAGTACT+AGG | - | chr3.4:29926479-29926498 | None:intergenic | 40.0% | |
| AATGTCGTAATTAGGCGACA+AGG | - | chr3.4:29926938-29926957 | None:intergenic | 40.0% | |
| AGAAGAGCGAACTAAGGATT+GGG | + | chr3.4:29927178-29927197 | MS.gene45593:CDS | 40.0% | |
| AGCAAAATAGTTGGAAGGAG+GGG | + | chr3.4:29926571-29926590 | MS.gene45593:intron | 40.0% | |
| AGGACAGGTAGCAAAATAGT+TGG | + | chr3.4:29926562-29926581 | MS.gene45593:intron | 40.0% | |
| AGTAGTTGGCCATTACTGAT+AGG | - | chr3.4:29926662-29926681 | None:intergenic | 40.0% | |
| AGTTGTTGGGCTCAAAGTAT+GGG | + | chr3.4:29926450-29926469 | MS.gene45593:intron | 40.0% | |
| ATCCTTAGTTCGCTCTTCTT+TGG | - | chr3.4:29927177-29927196 | None:intergenic | 40.0% | |
| ATGAAGCATGTGCTCAACAA+GGG | + | chr3.4:29927316-29927335 | MS.gene45593:CDS | 40.0% | |
| ATGTCGTAATTAGGCGACAA+GGG | - | chr3.4:29926937-29926956 | None:intergenic | 40.0% | |
| ATGTTAGATCTTTCACGCTC+AGG | - | chr3.4:29927633-29927652 | None:intergenic | 40.0% | |
| ATTCATTGGGTAATAGGGGT+AGG | - | chr3.4:29927835-29927854 | None:intergenic | 40.0% | |
| ATTGCTTAAAGGGAGGGAAT+TGG | + | chr3.4:29926512-29926531 | MS.gene45593:intron | 40.0% | |
| CACTACAATCATGTTCCACA+AGG | + | chr3.4:29927783-29927802 | MS.gene45593:CDS | 40.0% | |
| CAGGTAGCAAAATAGTTGGA+AGG | + | chr3.4:29926566-29926585 | MS.gene45593:intron | 40.0% | |
| CATATCGAGCTCAGAACAAT+AGG | - | chr3.4:29927544-29927563 | None:intergenic | 40.0% | |
| CATTCTGATGCATGATCATC+TGG | - | chr3.4:29926286-29926305 | None:intergenic | 40.0% | |
| GAACAATAGGTCCCATTTCT+TGG | - | chr3.4:29927531-29927550 | None:intergenic | 40.0% | |
| GTAGCAAAATAGTTGGAAGG+AGG | + | chr3.4:29926569-29926588 | MS.gene45593:intron | 40.0% | |
| GTCTGATGCATCCAAGAAAT+GGG | + | chr3.4:29927598-29927617 | MS.gene45593:CDS | 40.0% | |
| TACAATCATGTTCCACAAGG+CGG | + | chr3.4:29927786-29927805 | MS.gene45593:CDS | 40.0% | |
| TAGTGGAATTGATGGAACCT+GGG | + | chr3.4:29926414-29926433 | MS.gene45593:intron | 40.0% | |
| TCATTTACTCCATGGACATC+AGG | - | chr3.4:29926313-29926332 | None:intergenic | 40.0% | |
| TCTGATGCATCCAAGAAATG+GGG | + | chr3.4:29927599-29927618 | MS.gene45593:CDS | 40.0% | |
| TGTCTGATGCATCCAAGAAA+TGG | + | chr3.4:29927597-29927616 | MS.gene45593:CDS | 40.0% | |
| TTCGCTGATCATTTACTCCA+TGG | - | chr3.4:29926321-29926340 | None:intergenic | 40.0% | |
| ! | ACATTTGAGATGCCTTGTGT+TGG | + | chr3.4:29926953-29926972 | MS.gene45593:intron | 40.0% |
| ! | ATAGTGGAATTGATGGAACC+TGG | + | chr3.4:29926413-29926432 | MS.gene45593:intron | 40.0% |
| ! | TTCGTAACGGTTTTTCTGTG+AGG | - | chr3.4:29927475-29927494 | None:intergenic | 40.0% |
| ! | TTGTGATGCAAATTTTGCGC+AGG | - | chr3.4:29927576-29927595 | None:intergenic | 40.0% |
| !! | CGGTTTTGTAAGGATGAGTT+AGG | + | chr3.4:29927012-29927031 | MS.gene45593:intron | 40.0% |
| !! | GGAAACAACTTGCTGAAAGA+CGG | + | chr3.4:29928021-29928040 | MS.gene45593:CDS | 40.0% |
| AATTGATGGAACCTGGGGAA+TGG | + | chr3.4:29926420-29926439 | MS.gene45593:intron | 45.0% | |
| ACCAGGTATACTATTGCTGC+TGG | - | chr3.4:29927406-29927425 | None:intergenic | 45.0% | |
| AGATTCCTTCAGGTCAGTCA+TGG | + | chr3.4:29927874-29927893 | MS.gene45593:CDS | 45.0% | |
| AGTATGGGAAGCCTAGTACT+TGG | + | chr3.4:29926465-29926484 | MS.gene45593:intron | 45.0% | |
| AGTGGAATTGATGGAACCTG+GGG | + | chr3.4:29926415-29926434 | MS.gene45593:intron | 45.0% | |
| ATAGGGGTAGGACATCATTC+CGG | - | chr3.4:29927823-29927842 | None:intergenic | 45.0% | |
| ATCCGGATGCCTATCAGTAA+TGG | + | chr3.4:29926650-29926669 | MS.gene45593:intron | 45.0% | |
| ATGTACCAGCATGATTCTGC+AGG | - | chr3.4:29927752-29927771 | None:intergenic | 45.0% | |
| ATTGATGGAACCTGGGGAAT+GGG | + | chr3.4:29926421-29926440 | MS.gene45593:intron | 45.0% | |
| CAAGGGGCAGATCACAATAA+AGG | - | chr3.4:29926920-29926939 | None:intergenic | 45.0% | |
| CAGCATGAACAATCCCTTCA+AGG | - | chr3.4:29927260-29927279 | None:intergenic | 45.0% | |
| CAGGTATACTATTGCTGCTG+GGG | - | chr3.4:29927404-29927423 | None:intergenic | 45.0% | |
| CAGTTGTTGGGCTCAAAGTA+TGG | + | chr3.4:29926449-29926468 | MS.gene45593:intron | 45.0% | |
| CATGAAGCATGTGCTCAACA+AGG | + | chr3.4:29927315-29927334 | MS.gene45593:CDS | 45.0% | |
| CCAGGTATACTATTGCTGCT+GGG | - | chr3.4:29927405-29927424 | None:intergenic | 45.0% | |
| CTCCAAAGAAGAGCGAACTA+AGG | + | chr3.4:29927172-29927191 | MS.gene45593:CDS | 45.0% | |
| GAAGAGCGAACTAAGGATTG+GGG | + | chr3.4:29927179-29927198 | MS.gene45593:CDS | 45.0% | |
| GGACAATGAACCCCATTTCT+TGG | - | chr3.4:29927612-29927631 | None:intergenic | 45.0% | |
| GGAGTAAATGATCAGCGAAC+AGG | + | chr3.4:29926322-29926341 | MS.gene45593:CDS | 45.0% | |
| GTATGGGAAGCCTAGTACTT+GGG | + | chr3.4:29926466-29926485 | MS.gene45593:intron | 45.0% | |
| TATGGGAAGCCTAGTACTTG+GGG | + | chr3.4:29926467-29926486 | MS.gene45593:intron | 45.0% | |
| TCTGATGCATGATCATCTGG+AGG | - | chr3.4:29926283-29926302 | None:intergenic | 45.0% | |
| TGAAGCATGTGCTCAACAAG+GGG | + | chr3.4:29927317-29927336 | MS.gene45593:CDS | 45.0% | |
| TGCTAATGCTGATGCTGTTG+AGG | + | chr3.4:29926255-29926274 | MS.gene45593:CDS | 45.0% | |
| TGTCGTAATTAGGCGACAAG+GGG | - | chr3.4:29926936-29926955 | None:intergenic | 45.0% | |
| TTCCATCCTCACATGTAAGG+CGG | - | chr3.4:29927289-29927308 | None:intergenic | 45.0% | |
| TTGTACTCCACCTGCATCTT+TGG | + | chr3.4:29927446-29927465 | MS.gene45593:CDS | 45.0% | |
| ! | ATTGGTTGCACTTGCTGAGT+TGG | + | chr3.4:29926530-29926549 | MS.gene45593:intron | 45.0% |
| ! | CTCATCTTTCCCCACCTTTT+TGG | + | chr3.4:29926760-29926779 | MS.gene45593:intron | 45.0% |
| ! | TGATACATTTGCGCCGATGA+AGG | - | chr3.4:29927714-29927733 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGCTTGTA+AGG | - | chr3.4:29927005-29927024 | None:intergenic | 45.0% |
| !! | CCTTACAAGCCGGTTTTGTA+AGG | + | chr3.4:29927002-29927021 | MS.gene45593:intron | 45.0% |
| ACAATGCCGCCTTACATGTG+AGG | + | chr3.4:29927280-29927299 | MS.gene45593:CDS | 50.0% | |
| ACCCTCTCAAAGCCAACACA+AGG | - | chr3.4:29926968-29926987 | None:intergenic | 50.0% | |
| AGCGAACTAAGGATTGGGGT+TGG | + | chr3.4:29927183-29927202 | MS.gene45593:CDS | 50.0% | |
| CAACCAGGTCAGATTCCTTC+AGG | + | chr3.4:29927864-29927883 | MS.gene45593:CDS | 50.0% | |
| CCCAGCAGCAATAGTATACC+TGG | + | chr3.4:29927402-29927421 | MS.gene45593:CDS | 50.0% | |
| CGAACTAAGGATTGGGGTTG+GGG | + | chr3.4:29927185-29927204 | MS.gene45593:CDS | 50.0% | |
| GAATGGGTGGGTCAGTTGTT+GGG | + | chr3.4:29926437-29926456 | MS.gene45593:intron | 50.0% | |
| GAATGTCAGCCTGATGTCCA+TGG | + | chr3.4:29926301-29926320 | MS.gene45593:CDS | 50.0% | |
| GACATCATTCCGGTGGTATG+AGG | - | chr3.4:29927813-29927832 | None:intergenic | 50.0% | |
| GCGAACTAAGGATTGGGGTT+GGG | + | chr3.4:29927184-29927203 | MS.gene45593:CDS | 50.0% | |
| GGCCATTACTGATAGGCATC+CGG | - | chr3.4:29926655-29926674 | None:intergenic | 50.0% | |
| GGGGCAGATCACAATAAAGG+TGG | - | chr3.4:29926917-29926936 | None:intergenic | 50.0% | |
| TCGGATGAACTTCCGAAGGA+TGG | - | chr3.4:29927900-29927919 | None:intergenic | 50.0% | |
| TGACCTGAAGGAATCTGACC+TGG | - | chr3.4:29927870-29927889 | None:intergenic | 50.0% | |
| TGCTTCGGATGAACTTCCGA+AGG | - | chr3.4:29927904-29927923 | None:intergenic | 50.0% | |
| TGTGAGGCTTCCAAAGATGC+AGG | - | chr3.4:29927459-29927478 | None:intergenic | 50.0% | |
| ! | TTGCACTTGCTGAGTTGGCA+GGG | + | chr3.4:29926535-29926554 | MS.gene45593:intron | 50.0% |
| !! | CAAAACCGGCTTGTAAGGTG+AGG | - | chr3.4:29927000-29927019 | None:intergenic | 50.0% |
| !! | GCCTTGTGTTGGCTTTGAGA+GGG | + | chr3.4:29926964-29926983 | MS.gene45593:intron | 50.0% |
| !! | TGCCTTGTGTTGGCTTTGAG+AGG | + | chr3.4:29926963-29926982 | MS.gene45593:intron | 50.0% |
| !! | TTGTGTTGGCTTTGAGAGGG+TGG | + | chr3.4:29926967-29926986 | MS.gene45593:intron | 50.0% |
| ACAAACTGTCCCCTCACACG+AGG | - | chr3.4:29928047-29928066 | None:intergenic | 55.0% | |
| ATGGAACCTGGGGAATGGGT+GGG | + | chr3.4:29926425-29926444 | MS.gene45593:intron | 55.0% | |
| CACGACCTGCAGAATCATGC+TGG | + | chr3.4:29927744-29927763 | MS.gene45593:CDS | 55.0% | |
| CAGCATGATTCTGCAGGTCG+TGG | - | chr3.4:29927746-29927765 | None:intergenic | 55.0% | |
| GAGGCTTCCAAAGATGCAGG+TGG | - | chr3.4:29927456-29927475 | None:intergenic | 55.0% | |
| GATGGCCATGACTGACCTGA+AGG | - | chr3.4:29927882-29927901 | None:intergenic | 55.0% | |
| GCACTCCTCACCTTACAAGC+CGG | + | chr3.4:29926992-29927011 | MS.gene45593:intron | 55.0% | |
| GGAATGGGTGGGTCAGTTGT+TGG | + | chr3.4:29926436-29926455 | MS.gene45593:intron | 55.0% | |
| GGTCAGTCATGGCCATCCTT+CGG | + | chr3.4:29927885-29927904 | MS.gene45593:CDS | 55.0% | |
| TGAAAGACGGCCTCGTGTGA+GGG | + | chr3.4:29928034-29928053 | MS.gene45593:CDS | 55.0% | |
| TGCCGCCTTACATGTGAGGA+TGG | + | chr3.4:29927284-29927303 | MS.gene45593:CDS | 55.0% | |
| ! | AGTTGGCAGGGTGTTAGGAC+AGG | + | chr3.4:29926547-29926566 | MS.gene45593:intron | 55.0% |
| ! | GTTGCACTTGCTGAGTTGGC+AGG | + | chr3.4:29926534-29926553 | MS.gene45593:intron | 55.0% |
| ! | TGCTGAGTTGGCAGGGTGTT+AGG | + | chr3.4:29926542-29926561 | MS.gene45593:intron | 55.0% |
| !! | TGTTGGCTTTGAGAGGGTGG+AGG | + | chr3.4:29926970-29926989 | MS.gene45593:intron | 55.0% |
| AACTGACCCACCCATTCCCC+AGG | - | chr3.4:29926434-29926453 | None:intergenic | 60.0% | |
| CAAGGCGGTCCTCATACCAC+CGG | + | chr3.4:29927801-29927820 | MS.gene45593:CDS | 60.0% | |
| CTGAAAGACGGCCTCGTGTG+AGG | + | chr3.4:29928033-29928052 | MS.gene45593:CDS | 60.0% | |
| GAAAGACGGCCTCGTGTGAG+GGG | + | chr3.4:29928035-29928054 | MS.gene45593:CDS | 60.0% | |
| GATGGAACCTGGGGAATGGG+TGG | + | chr3.4:29926424-29926443 | MS.gene45593:intron | 60.0% | |
| GGGAAGCCTAGTACTTGGGG+AGG | + | chr3.4:29926470-29926489 | MS.gene45593:intron | 60.0% | |
| GGGGTAGGACATCATTCCGG+TGG | - | chr3.4:29927820-29927839 | None:intergenic | 60.0% | |
| GTGGTATGAGGACCGCCTTG+TGG | - | chr3.4:29927801-29927820 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 29926229 | 29928145 | 29926229 | ID=MS.gene45593 |
| chr3.4 | mRNA | 29926229 | 29928145 | 29926229 | ID=MS.gene45593.t1;Parent=MS.gene45593 |
| chr3.4 | exon | 29926229 | 29926343 | 29926229 | ID=MS.gene45593.t1.exon1;Parent=MS.gene45593.t1 |
| chr3.4 | CDS | 29926229 | 29926343 | 29926229 | ID=cds.MS.gene45593.t1;Parent=MS.gene45593.t1 |
| chr3.4 | exon | 29927157 | 29928145 | 29927157 | ID=MS.gene45593.t1.exon2;Parent=MS.gene45593.t1 |
| chr3.4 | CDS | 29927157 | 29928145 | 29927157 | ID=cds.MS.gene45593.t1;Parent=MS.gene45593.t1 |
| Gene Sequence |
| Protein sequence |
