Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45649.t1 | XP_013444029.1 | 96.3 | 535 | 20 | 0 | 1 | 535 | 1 | 535 | 3.90E-297 | 1030 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45649.t1 | A0A072TLF7 | 96.3 | 535 | 20 | 0 | 1 | 535 | 1 | 535 | 2.8e-297 | 1030.0 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052493 | MS.gene45649 | 0.800297 | 1.54E-48 | -1.69E-46 |
MS.gene054222 | MS.gene45649 | 0.809196 | 2.13E-50 | -1.69E-46 |
MS.gene054576 | MS.gene45649 | 0.8422 | 2.99E-58 | -1.69E-46 |
MS.gene054892 | MS.gene45649 | 0.801585 | 8.40E-49 | -1.69E-46 |
MS.gene056638 | MS.gene45649 | 0.809203 | 2.13E-50 | -1.69E-46 |
MS.gene059774 | MS.gene45649 | 0.829019 | 6.51E-55 | -1.69E-46 |
MS.gene060012 | MS.gene45649 | 0.80669 | 7.28E-50 | -1.69E-46 |
MS.gene060697 | MS.gene45649 | 0.828006 | 1.14E-54 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45649.t1 | MTR_8g010360 | 96.262 | 535 | 20 | 0 | 1 | 535 | 1 | 535 | 0.0 | 1078 |
MS.gene45649.t1 | MTR_8g010360 | 97.154 | 527 | 15 | 0 | 1 | 527 | 1 | 527 | 0.0 | 1074 |
MS.gene45649.t1 | MTR_1g077190 | 31.876 | 549 | 305 | 10 | 45 | 525 | 187 | 734 | 2.62e-73 | 248 |
MS.gene45649.t1 | MTR_1g077190 | 31.876 | 549 | 305 | 10 | 45 | 525 | 181 | 728 | 3.28e-73 | 247 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene45649.t1 | AT3G03560 | 53.396 | 530 | 218 | 6 | 19 | 535 | 5 | 518 | 0.0 | 553 |
MS.gene45649.t1 | AT5G23490 | 31.767 | 532 | 297 | 10 | 44 | 525 | 26 | 541 | 4.76e-81 | 264 |
MS.gene45649.t1 | AT5G23490 | 31.767 | 532 | 297 | 10 | 44 | 525 | 195 | 710 | 9.18e-80 | 265 |
MS.gene45649.t1 | AT5G08440 | 32.941 | 510 | 283 | 9 | 54 | 525 | 218 | 706 | 1.29e-79 | 264 |
MS.gene45649.t1 | AT5G23490 | 31.767 | 532 | 297 | 10 | 44 | 525 | 195 | 710 | 1.62e-79 | 264 |
MS.gene45649.t1 | AT5G08440 | 32.943 | 513 | 280 | 10 | 54 | 525 | 218 | 707 | 2.81e-79 | 263 |
MS.gene45649.t1 | AT5G23490 | 31.323 | 514 | 292 | 9 | 44 | 512 | 195 | 692 | 2.24e-75 | 252 |
MS.gene45649.t1 | AT5G08440 | 30.755 | 556 | 278 | 12 | 54 | 525 | 218 | 750 | 2.24e-71 | 243 |
MS.gene45649.t1 | AT5G23510 | 45.098 | 204 | 106 | 2 | 326 | 525 | 45 | 246 | 3.23e-54 | 184 |
MS.gene45649.t1 | AT5G23510 | 45.098 | 204 | 106 | 2 | 326 | 525 | 45 | 246 | 7.01e-54 | 183 |
MS.gene45649.t1 | AT5G23510 | 45.098 | 204 | 106 | 2 | 326 | 525 | 84 | 285 | 7.07e-54 | 185 |
Find 104 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATCTCATGCTGCATTTC+TGG | 0.038144 | 8.3:+78171749 | None:intergenic |
AACTTCTCTTTGTATGTTTC+AGG | 0.122947 | 8.3:-78173283 | MS.gene45649:intron |
CAGTACCACTTATCTTAATT+TGG | 0.128038 | 8.3:+78170753 | None:intergenic |
AGATGGATTCATCTGAAAAT+TGG | 0.196559 | 8.3:-78170811 | MS.gene45649:CDS |
ATTCCCCAGCAAAATCTTAT+TGG | 0.213616 | 8.3:-78174289 | MS.gene45649:CDS |
CATGGTTTAATTGATCAAAT+TGG | 0.263912 | 8.3:-78173559 | MS.gene45649:CDS |
GCTTAACAACGATGAGATTC+AGG | 0.273041 | 8.3:-78177474 | MS.gene45649:CDS |
CTAGGATTGCTGGCAGAATA+TGG | 0.304704 | 8.3:-78175564 | MS.gene45649:CDS |
CAATCTCATGCTGCATTTCT+GGG | 0.321836 | 8.3:+78171750 | None:intergenic |
AGAATTGGAGAGTTAACTTC+TGG | 0.339289 | 8.3:-78174525 | MS.gene45649:CDS |
GTCATCTATGCTAGGATTGC+TGG | 0.343886 | 8.3:-78175574 | MS.gene45649:CDS |
TCATTATGAATGTGATTTGT+CGG | 0.364696 | 8.3:+78174444 | None:intergenic |
CGGGCGTTCACTGTGCTTAG+AGG | 0.366352 | 8.3:+78170387 | None:intergenic |
ATTCAGAAGGGTCAACTATC+AGG | 0.369128 | 8.3:-78174188 | MS.gene45649:CDS |
ACAGTGGGTTCGGCATCTTC+AGG | 0.373194 | 8.3:-78173171 | MS.gene45649:intron |
TCACATTCATAATGAATTCA+TGG | 0.378535 | 8.3:-78174436 | MS.gene45649:intron |
GAAATTCTCAAAGGACTTAT+CGG | 0.383309 | 8.3:-78170711 | MS.gene45649:intron |
ATCTGCGGTGATGCTATTCC+TGG | 0.388358 | 8.3:-78173342 | MS.gene45649:CDS |
GGTCAAGGCTCAGAATTTCT+AGG | 0.389100 | 8.3:-78177452 | MS.gene45649:CDS |
CAAGAAATTCATGCAGATAA+TGG | 0.393619 | 8.3:-78174501 | MS.gene45649:CDS |
AATCTTCAGTGTTCAACTTC+TGG | 0.398745 | 8.3:-78171702 | MS.gene45649:intron |
GATGGATTCATCTGAAAATT+GGG | 0.403914 | 8.3:-78170810 | MS.gene45649:CDS |
TGGGTTCGTGACAGTGGGTT+CGG | 0.415575 | 8.3:-78173181 | MS.gene45649:intron |
TGTATTCCAATGGACGATAA+AGG | 0.424243 | 8.3:-78172936 | MS.gene45649:CDS |
AGATTTCTAATGCTGCTGAT+AGG | 0.437149 | 8.3:-78174165 | MS.gene45649:intron |
CTAGACTCACTTTCAAATCA+TGG | 0.440697 | 8.3:+78176660 | None:intergenic |
TATCCTGTCATATTGCTCAT+TGG | 0.450061 | 8.3:+78174247 | None:intergenic |
TAACCATGCTGTTGAAAGTC+CGG | 0.453911 | 8.3:-78174478 | MS.gene45649:CDS |
ATTGACACATATTTGTCTAA+AGG | 0.457743 | 8.3:-78171731 | MS.gene45649:CDS |
GATTGCTGTTTCTTGTATGA+AGG | 0.459963 | 8.3:-78177004 | MS.gene45649:intron |
ACTCTATTCTTAAGACGATC+AGG | 0.466194 | 8.3:-78170779 | MS.gene45649:CDS |
ATTTGAAAATTCTCAATGCC+AGG | 0.470912 | 8.3:+78173363 | None:intergenic |
CGCTCAGGACCTAGACACTA+TGG | 0.471026 | 8.3:-78177232 | MS.gene45649:intron |
TGCTGGCAGAATATGGTTTG+TGG | 0.488103 | 8.3:-78175557 | MS.gene45649:CDS |
GACTGCTTCCTCTGTTTCTG+AGG | 0.488642 | 8.3:-78173458 | MS.gene45649:CDS |
TCGTTGTTAAGCCCGCGCGA+AGG | 0.490974 | 8.3:+78177485 | None:intergenic |
TATATGAACCCAGGTGTTAG+TGG | 0.491039 | 8.3:-78174226 | MS.gene45649:CDS |
CAAAGAGAAGTTCGACGGAC+TGG | 0.491588 | 8.3:+78173294 | None:intergenic |
ATCAATTAAACCATGTTGGA+AGG | 0.491708 | 8.3:+78173567 | None:intergenic |
CCTTCGAGCAAGATCATTAG+CGG | 0.495375 | 8.3:+78176715 | None:intergenic |
TTTGATCAATTAAACCATGT+TGG | 0.502162 | 8.3:+78173563 | None:intergenic |
ATTGGCATGCAAGAGAGAAC+TGG | 0.504735 | 8.3:-78173541 | MS.gene45649:CDS |
CGTTGTTAAGCCCGCGCGAA+GGG | 0.508565 | 8.3:+78177486 | None:intergenic |
GGTGTTAGTGGTGATGTAAA+CGG | 0.509141 | 8.3:-78174214 | MS.gene45649:CDS |
TTCAGTATCCAACTATGTAA+AGG | 0.509317 | 8.3:-78175514 | MS.gene45649:intron |
TGACGGCCTTTATCGTCCAT+TGG | 0.510180 | 8.3:+78172930 | None:intergenic |
CTGTTAAAAGCCCTTCGCGC+GGG | 0.513801 | 8.3:-78177496 | MS.gene45649:CDS |
CTCTAAGCACAGTGAACGCC+CGG | 0.517034 | 8.3:-78170386 | MS.gene45649:intron |
AATGGACGATAAAGGCCGTC+AGG | 0.517378 | 8.3:-78172928 | MS.gene45649:intron |
AACCATGTTGGAAGGAAGAT+AGG | 0.523000 | 8.3:+78173575 | None:intergenic |
GGCACTAGGCAGTACATTGA+AGG | 0.524560 | 8.3:-78173146 | MS.gene45649:intron |
GAATTGGAGAGTTAACTTCT+GGG | 0.530167 | 8.3:-78174524 | MS.gene45649:CDS |
AACTACATACTCTGGATTCG+TGG | 0.536633 | 8.3:+78172995 | None:intergenic |
AACCATGCTGTTGAAAGTCC+GGG | 0.539042 | 8.3:-78174477 | MS.gene45649:CDS |
ACAATTTGTGTTAACATGCT+CGG | 0.539879 | 8.3:-78170424 | MS.gene45649:CDS |
GGATACCAAATTAAGATAAG+TGG | 0.543072 | 8.3:-78170758 | MS.gene45649:CDS |
TAGACTCACTTTCAAATCAT+GGG | 0.552734 | 8.3:+78176661 | None:intergenic |
AATGATCTTGCTCGAAGGAA+AGG | 0.555271 | 8.3:-78176710 | MS.gene45649:CDS |
CAAATCTTTCTAGATGGCCC+TGG | 0.558170 | 8.3:-78173381 | MS.gene45649:intron |
TTTACATCACCACTAACACC+TGG | 0.560197 | 8.3:+78174217 | None:intergenic |
CTGTCATATTGCTCATTGGT+TGG | 0.564575 | 8.3:+78174251 | None:intergenic |
CAATCTGTTCACGAAGGGAG+AGG | 0.565208 | 8.3:+78177022 | None:intergenic |
ATGTAAACGGAGCATTCAGA+AGG | 0.570272 | 8.3:-78174201 | MS.gene45649:CDS |
TCGGCTGTAACTACATACTC+TGG | 0.571630 | 8.3:+78172987 | None:intergenic |
TGAGAAATGCAAACTAGAGA+GGG | 0.576355 | 8.3:-78176887 | MS.gene45649:CDS |
GGCATCTTCAGGATGGCACT+AGG | 0.576862 | 8.3:-78173160 | MS.gene45649:CDS |
ATCTTCATGTCATCTATGCT+AGG | 0.577473 | 8.3:-78175582 | MS.gene45649:CDS |
TACATAGTTGGATACTGAAG+AGG | 0.577579 | 8.3:+78175518 | None:intergenic |
TTTGTCGGATTTGCGGAACC+CGG | 0.579033 | 8.3:+78174459 | None:intergenic |
TGATGCACTTAATCACGCTC+AGG | 0.579821 | 8.3:-78177247 | MS.gene45649:CDS |
AAGGCTCAGAATTTCTAGGC+AGG | 0.581505 | 8.3:-78177448 | MS.gene45649:intron |
CTTAACAACGATGAGATTCA+GGG | 0.582740 | 8.3:-78177473 | MS.gene45649:CDS |
AGCAGTTGAGTGTATTCCAA+TGG | 0.584863 | 8.3:-78172946 | MS.gene45649:CDS |
GTCTCGTCATGCTCATGTGA+AGG | 0.586436 | 8.3:+78173478 | None:intergenic |
AACGATGAGATTCAGGGTCA+AGG | 0.586447 | 8.3:-78177467 | MS.gene45649:CDS |
GACCTATCTTCCTTCCAACA+TGG | 0.587812 | 8.3:-78173577 | MS.gene45649:CDS |
AATGTGATTTGTCGGATTTG+CGG | 0.589636 | 8.3:+78174452 | None:intergenic |
AACCCGGACTTTCAACAGCA+TGG | 0.591961 | 8.3:+78174475 | None:intergenic |
TCTGTTAAAAGCCCTTCGCG+CGG | 0.592133 | 8.3:-78177497 | MS.gene45649:CDS |
TTTGAAAATTCTCAATGCCA+GGG | 0.594336 | 8.3:+78173364 | None:intergenic |
ACTGCTTCCTCTGTTTCTGA+GGG | 0.597603 | 8.3:-78173457 | MS.gene45649:intron |
ATGAGAAATGCAAACTAGAG+AGG | 0.598711 | 8.3:-78176888 | MS.gene45649:CDS |
TTTGTGTTAACATGCTCGGA+TGG | 0.599067 | 8.3:-78170420 | MS.gene45649:CDS |
CCGCTAATGATCTTGCTCGA+AGG | 0.606083 | 8.3:-78176715 | MS.gene45649:CDS |
AACAGCAATCTGTTCACGAA+GGG | 0.608091 | 8.3:+78177017 | None:intergenic |
TATCAGTTTATCGACATCAT+CGG | 0.613449 | 8.3:+78172968 | None:intergenic |
GACCAGCACAAAATAAAATG+TGG | 0.616748 | 8.3:-78172154 | MS.gene45649:intron |
CAACCAATGAGCAATATGAC+AGG | 0.619492 | 8.3:-78174250 | MS.gene45649:CDS |
ACATACAAAGAGAAGTTCGA+CGG | 0.621070 | 8.3:+78173289 | None:intergenic |
TACATGATCAAATACAATGG+AGG | 0.622516 | 8.3:-78174964 | MS.gene45649:CDS |
AGTTTCTGAGAAATTCTCAA+AGG | 0.625438 | 8.3:-78170720 | MS.gene45649:CDS |
AATTGTGACGAGAGACCACA+TGG | 0.632894 | 8.3:+78170441 | None:intergenic |
TGGGTTCGGCATCTTCAGGA+TGG | 0.635824 | 8.3:-78173167 | MS.gene45649:CDS |
ATCATTAATCTAGATTGCAG+AGG | 0.641867 | 8.3:-78175616 | MS.gene45649:intron |
GATAAGTGGTACTGAAGCTG+CGG | 0.645103 | 8.3:-78170744 | MS.gene45649:CDS |
CTTACTCTGGAAGAGTCGCA+TGG | 0.652953 | 8.3:+78169845 | None:intergenic |
TAAATTACCCTCAGAAACAG+AGG | 0.657268 | 8.3:+78173450 | None:intergenic |
TTACATCACCACTAACACCT+GGG | 0.665988 | 8.3:+78174218 | None:intergenic |
GAAGAGGCATTCATAACGCG+AGG | 0.670089 | 8.3:+78175534 | None:intergenic |
ATGACAGGATATATGAACCC+AGG | 0.675735 | 8.3:-78174235 | MS.gene45649:CDS |
AAACAGCAATCTGTTCACGA+AGG | 0.678830 | 8.3:+78177016 | None:intergenic |
ATTTACATGATCAAATACAA+TGG | 0.689823 | 8.3:-78174967 | MS.gene45649:CDS |
TGTAAACGGAGCATTCAGAA+GGG | 0.697256 | 8.3:-78174200 | MS.gene45649:CDS |
CTGCAGATTAAAGTTCCATG+TGG | 0.704102 | 8.3:-78170456 | MS.gene45649:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 78169726 | 78177525 | 78169726 | ID=MS.gene45649 |
chr8.3 | mRNA | 78169726 | 78177525 | 78169726 | ID=MS.gene45649.t1;Parent=MS.gene45649 |
chr8.3 | exon | 78177449 | 78177525 | 78177449 | ID=MS.gene45649.t1.exon1;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78177449 | 78177525 | 78177449 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78177233 | 78177314 | 78177233 | ID=MS.gene45649.t1.exon2;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78177233 | 78177314 | 78177233 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78177005 | 78177082 | 78177005 | ID=MS.gene45649.t1.exon3;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78177005 | 78177082 | 78177005 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78176867 | 78176926 | 78176867 | ID=MS.gene45649.t1.exon4;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78176867 | 78176926 | 78176867 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78176670 | 78176774 | 78176670 | ID=MS.gene45649.t1.exon5;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78176670 | 78176774 | 78176670 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78175515 | 78175625 | 78175515 | ID=MS.gene45649.t1.exon6;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78175515 | 78175625 | 78175515 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78174949 | 78174990 | 78174949 | ID=MS.gene45649.t1.exon7;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78174949 | 78174990 | 78174949 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78174437 | 78174550 | 78174437 | ID=MS.gene45649.t1.exon8;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78174437 | 78174550 | 78174437 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78174166 | 78174323 | 78174166 | ID=MS.gene45649.t1.exon9;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78174166 | 78174323 | 78174166 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78173458 | 78173600 | 78173458 | ID=MS.gene45649.t1.exon10;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78173458 | 78173600 | 78173458 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78173284 | 78173390 | 78173284 | ID=MS.gene45649.t1.exon11;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78173284 | 78173390 | 78173284 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78173147 | 78173189 | 78173147 | ID=MS.gene45649.t1.exon12;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78173147 | 78173189 | 78173147 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78172929 | 78173020 | 78172929 | ID=MS.gene45649.t1.exon13;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78172929 | 78173020 | 78172929 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78172155 | 78172203 | 78172155 | ID=MS.gene45649.t1.exon14;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78172155 | 78172203 | 78172155 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78171703 | 78171773 | 78171703 | ID=MS.gene45649.t1.exon15;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78171703 | 78171773 | 78171703 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78170712 | 78170831 | 78170712 | ID=MS.gene45649.t1.exon16;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78170712 | 78170831 | 78170712 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78170387 | 78170472 | 78170387 | ID=MS.gene45649.t1.exon17;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78170387 | 78170472 | 78170387 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78169850 | 78169890 | 78169850 | ID=MS.gene45649.t1.exon18;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78169850 | 78169890 | 78169850 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
chr8.3 | exon | 78169726 | 78169769 | 78169726 | ID=MS.gene45649.t1.exon19;Parent=MS.gene45649.t1 |
chr8.3 | CDS | 78169726 | 78169769 | 78169726 | ID=cds.MS.gene45649.t1;Parent=MS.gene45649.t1 |
Gene Sequence |
Protein sequence |