AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46089

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46089.t1 MTR_8g106170 83.965 792 65 8 11 743 16 804 0.0 1125
MS.gene46089.t1 MTR_7g063860 82.080 452 50 3 298 743 1 427 0.0 527
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46089.t1 AT1G14650 64.151 795 219 15 1 743 5 785 0.0 822
MS.gene46089.t1 AT1G14650 64.151 795 219 15 1 743 5 785 0.0 822
MS.gene46089.t1 AT1G14650 64.151 795 219 15 1 743 5 785 0.0 822
MS.gene46089.t1 AT1G14640 57.775 746 260 17 1 706 5 735 0.0 696
MS.gene46089.t1 AT1G14640 57.775 746 260 17 1 706 5 735 0.0 696
MS.gene46089.t1 AT5G12280 48.966 145 53 3 590 734 294 417 3.64e-30 124
MS.gene46089.t1 AT5G12280 30.978 184 99 5 40 222 89 245 9.27e-12 68.2
MS.gene46089.t1 AT4G16200 32.331 266 106 7 33 224 10 275 5.44e-30 120
MS.gene46089.t1 AT5G06520 33.607 244 121 8 34 273 391 597 7.07e-29 123
MS.gene46089.t1 AT5G06520 26.587 252 137 8 47 271 92 322 1.49e-14 78.2
MS.gene46089.t1 AT5G06520 34.706 170 88 6 141 308 79 227 4.36e-14 76.6
MS.gene46089.t1 AT5G06890 54.667 75 22 3 661 734 2 65 6.41e-15 70.5
MS.gene46089.t1 AT2G43960 26.744 258 155 9 40 284 9 245 3.08e-14 76.3

Find 232 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGTGGTTTCTCGAATTT+TGG 0.158981 7.2:-41752822 None:intergenic
TACTTCATCCTCTTTGGTTC+TGG 0.241819 7.2:-41753484 None:intergenic
GATCCCTGAGGATAAATTTC+TGG 0.243440 7.2:+41753522 MS.gene46089:CDS
ACTTGTCAATTCTGTCAAAA+AGG 0.246516 7.2:-41752090 None:intergenic
GGGAATGAGAGATGCTAGTT+TGG 0.254518 7.2:+41752562 MS.gene46089:CDS
CCGAGAGGCTTTATCAATAA+TGG 0.256433 7.2:-41751730 None:intergenic
AGATTTCCTTCATCAAAATT+AGG 0.258736 7.2:-41753583 None:intergenic
TGTTCTGACATTTCACTAAT+AGG 0.259470 7.2:-41752743 None:intergenic
CTCTTTGGTTCTGGTTCCTC+TGG 0.261880 7.2:-41753475 None:intergenic
AGCAACCTAAGCAGGTTATA+TGG 0.279454 7.2:+41752969 MS.gene46089:CDS
TTGGTTTCATGAAATGAAAT+TGG 0.291074 7.2:-41752130 None:intergenic
CCATCGTTACCATCAGTTTC+CGG 0.300288 7.2:-41751900 None:intergenic
GGATCAAGTACTTTCCTTAC+TGG 0.315230 7.2:-41751963 None:intergenic
CTCAATTTCTGCTTGTTAGC+AGG 0.319229 7.2:-41753694 None:intergenic
GAAATTAAACTTGGGATTGC+TGG 0.322274 7.2:-41751805 None:intergenic
CACAATTTGTGGCTCGTAAT+GGG 0.323408 7.2:+41752063 MS.gene46089:CDS
GAAGAAGATACTGCTGAGTT+AGG 0.325436 7.2:+41752488 MS.gene46089:CDS
TGGTTTCATGAAATGAAATT+GGG 0.327351 7.2:-41752129 None:intergenic
GGCATTCCTTGGTTATTCAT+AGG 0.329052 7.2:-41753307 None:intergenic
GCTTCCTCAGGAGGCGGCGG+TGG 0.330227 7.2:-41753439 None:intergenic
TCGTCATACTTCATCCTCTT+TGG 0.331389 7.2:-41753490 None:intergenic
ATTGGAAGGCCAATGCTATT+AGG 0.334626 7.2:-41753217 None:intergenic
AGCTTCTCTGTCAACCCCTT+TGG 0.339349 7.2:-41752215 None:intergenic
CAAGCAATGTCACAAAATAT+TGG 0.348373 7.2:+41753028 MS.gene46089:CDS
TGGTTATTCATAGGAATTGA+TGG 0.349393 7.2:-41753298 None:intergenic
CCTCCCACTGATGGAAATCT+TGG 0.352504 7.2:+41751618 MS.gene46089:CDS
TTAAACCGGGCAGAAATATC+AGG 0.353449 7.2:-41751939 None:intergenic
TCCTCCCTTGTAATGCCTTC+AGG 0.361482 7.2:-41752017 None:intergenic
AGTCCAGGTGGTGGCGGAAT+AGG 0.370020 7.2:-41753145 None:intergenic
AAGGGAATAAGAGTGAAGTT+AGG 0.372148 7.2:+41752597 MS.gene46089:CDS
GTGCTGATAATATGCATGAT+AGG 0.375932 7.2:-41751844 None:intergenic
CTTCCTCAGGAGGCGGCGGT+GGG 0.381326 7.2:-41753438 None:intergenic
AAATCTCAAAGGACAAGTTC+TGG 0.387127 7.2:+41753600 MS.gene46089:CDS
GCCACACACACTAGAACTAT+TGG 0.387802 7.2:+41751678 MS.gene46089:CDS
TCATTCCCTCTTCAACAAGC+TGG 0.390495 7.2:-41752547 None:intergenic
CAGTTCTTCACAATCCTAAT+CGG 0.396930 7.2:-41752641 None:intergenic
CTTTCCTTACTGGTTTAAAC+CGG 0.399511 7.2:-41751953 None:intergenic
CCCTTGCCAATGCATATTCA+AGG 0.403415 7.2:+41752180 MS.gene46089:CDS
ACTCCTTGAGGTGGAGGTGG+TGG 0.405349 7.2:-41753412 None:intergenic
TAAATTTCTGGATCAGCATC+AGG 0.405570 7.2:+41753534 MS.gene46089:CDS
AGAGGTTTCCAATGCTGTTA+AGG 0.406420 7.2:+41752922 MS.gene46089:CDS
CTCCCACTGATGGAAATCTT+GGG 0.407306 7.2:+41751619 MS.gene46089:CDS
TGTGCATGCCTGGTCTTGGT+GGG 0.408145 7.2:-41753243 None:intergenic
CGATTAGGATTGTGAAGAAC+TGG 0.415914 7.2:+41752642 MS.gene46089:CDS
AAAGCTTACAACACAATTTG+TGG 0.416193 7.2:+41752052 MS.gene46089:CDS
GTGGAGGAATGGGCATTCCT+TGG 0.419123 7.2:-41753318 None:intergenic
GTTAGGGAAGGAAGTAGAAA+TGG 0.421339 7.2:+41752505 MS.gene46089:CDS
TTCTCTGTCAACCCCTTTGG+AGG 0.429998 7.2:-41752212 None:intergenic
TTACCATCAGTTTCCGGTGC+AGG 0.435503 7.2:-41751894 None:intergenic
CCTCACCCTCATCCACCATC+AGG 0.435685 7.2:+41753370 MS.gene46089:CDS
TAGTGATTCAACCAAGTTTG+TGG 0.439178 7.2:+41752694 MS.gene46089:CDS
TAGGAATTGATGGATGCATT+GGG 0.444523 7.2:-41753288 None:intergenic
TACAAATGGCTATGGTTGAT+TGG 0.445085 7.2:+41752354 MS.gene46089:CDS
ACACAATTTGTGGCTCGTAA+TGG 0.446772 7.2:+41752062 MS.gene46089:CDS
TCTGCACGAAGCCTGTCTTC+TGG 0.451304 7.2:-41752671 None:intergenic
ACCATCAGGGATGATGCTTA+TGG 0.453017 7.2:+41753384 MS.gene46089:CDS
GCAACCTAAGCAGGTTATAT+GGG 0.454626 7.2:+41752970 MS.gene46089:CDS
AAAACATTGTTGGACTTGCT+CGG 0.455205 7.2:+41752867 MS.gene46089:CDS
AATTTCAGCCTTAACAGCAT+TGG 0.456041 7.2:-41752930 None:intergenic
GATACTCCTTGAGGTGGAGG+TGG 0.456648 7.2:-41753415 None:intergenic
TGCATGCCTGGTCTTGGTGG+GGG 0.457278 7.2:-41753241 None:intergenic
GGATGAGGGTGAGGAACATA+AGG 0.458423 7.2:-41753361 None:intergenic
ATGTGCATGCCTGGTCTTGG+TGG 0.461170 7.2:-41753244 None:intergenic
GATCCAGGTGGTGGAGGAAT+GGG 0.466476 7.2:-41753328 None:intergenic
TCTTTCTGTTCTTTGTACTT+CGG 0.466761 7.2:-41752788 None:intergenic
GAAGGAAGTAGAAATGGAAA+TGG 0.467583 7.2:+41752511 MS.gene46089:CDS
AGGGAATAAGAGTGAAGTTA+GGG 0.469948 7.2:+41752598 MS.gene46089:CDS
AGATCCAGGTGGTGGAGGAA+TGG 0.470134 7.2:-41753329 None:intergenic
TGGATTGAGGAAATTAAACT+TGG 0.471770 7.2:-41751814 None:intergenic
TTCTCTTTATCACCTCCTCA+AGG 0.472098 7.2:-41752448 None:intergenic
TTTGTGGTTTCTCCTATCAC+TGG 0.472995 7.2:+41752710 MS.gene46089:CDS
GGAATCAGTTCACCAGTGAT+AGG 0.473489 7.2:-41752722 None:intergenic
TCAATTTCTGCTTGTTAGCA+GGG 0.474049 7.2:-41753693 None:intergenic
GTCATGTGCATGCCTGGTCT+TGG 0.475861 7.2:-41753247 None:intergenic
GATGTGTGAATGGGCTGGAA+TGG 0.475952 7.2:+41752273 MS.gene46089:CDS
CATTCCCTCTTCAACAAGCT+GGG 0.478566 7.2:-41752546 None:intergenic
TTCTGGTTCCTCTGGAAACA+AGG 0.479917 7.2:-41753467 None:intergenic
ATCACCTCCTCAAGGGTCAA+TGG 0.481787 7.2:-41752440 None:intergenic
CCATCCCATATAACCTGCTT+AGG 0.482921 7.2:-41752974 None:intergenic
AGAGCAAGAAAGAATACAAA+TGG 0.484421 7.2:+41752340 MS.gene46089:CDS
GGCTTCCTGAAGGCATTACA+AGG 0.485693 7.2:+41752012 MS.gene46089:CDS
GGAGCTTCCTCAGGAGGCGG+CGG 0.486510 7.2:-41753442 None:intergenic
CTGCCCGGTTTAAACCAGTA+AGG 0.487537 7.2:+41751949 MS.gene46089:CDS
GGGGATACTCCTTGAGGTGG+AGG 0.491423 7.2:-41753418 None:intergenic
TCAGTGGGAGGAGCGGGTAG+AGG 0.492761 7.2:-41751606 None:intergenic
AACTGAGATCCAGGTGGTGG+AGG 0.493314 7.2:-41753334 None:intergenic
TGCACATGACGCAATCTCTC+CGG 0.493421 7.2:+41753260 MS.gene46089:CDS
TGATCCAGAAATTTATCCTC+AGG 0.493754 7.2:-41753526 None:intergenic
AACACCGTGAACCACCGATT+AGG 0.494010 7.2:+41752627 MS.gene46089:CDS
AAATGATGAGCAACCTAAGC+AGG 0.494557 7.2:+41752961 MS.gene46089:CDS
TTTCCATCAGTGGGAGGAGC+GGG 0.498622 7.2:-41751612 None:intergenic
ATAGGAATTGATGGATGCAT+TGG 0.501574 7.2:-41753289 None:intergenic
ACAAGAGCACGCTAGGCAAA+AGG 0.502855 7.2:+41752304 MS.gene46089:CDS
GAGAAGCAAGATAACACCTA+TGG 0.505678 7.2:+41752466 MS.gene46089:CDS
AGGTTGAGCAGTATACAGTT+AGG 0.506422 7.2:+41751991 MS.gene46089:CDS
ATATTGTCCTTGAGAAAGCC+TGG 0.508540 7.2:-41753724 None:intergenic
CTACCCGCTCCTCCCACTGA+TGG 0.510889 7.2:+41751609 MS.gene46089:CDS
AACAAGGGAGGAGCTTCCTC+AGG 0.512702 7.2:-41753451 None:intergenic
GATTGCGTCATGTGCATGCC+TGG 0.513367 7.2:-41753253 None:intergenic
AATGGAAATGGACGAGGAAG+AGG 0.514865 7.2:+41752523 MS.gene46089:CDS
ACTGTATACTGCTCAACCTC+GGG 0.515323 7.2:-41751987 None:intergenic
TTCCTCAGGAGGCGGCGGTG+GGG 0.516253 7.2:-41753437 None:intergenic
ATGGTCTTGAATTCGAAAAG+AGG 0.517310 7.2:+41751766 MS.gene46089:CDS
CGTCCTATTCCGCCACCACC+TGG 0.517611 7.2:+41753142 MS.gene46089:CDS
AAGAAGATACTGCTGAGTTA+GGG 0.518992 7.2:+41752489 MS.gene46089:CDS
GAATATTGCATGTTATGTAA+AGG 0.519024 7.2:-41753190 None:intergenic
TGATGGAAATCTTGGGGAGG+AGG 0.519562 7.2:+41751626 MS.gene46089:CDS
CAGAAATTGAGTGGAAAGCC+AGG 0.519574 7.2:+41753706 MS.gene46089:CDS
AGAGGCCCAGCTTGTTGAAG+AGG 0.521543 7.2:+41752541 MS.gene46089:CDS
GGAGGAGCTTCCTCAGGAGG+CGG 0.521643 7.2:-41753445 None:intergenic
TAAGGAGTGAACTGAGATCC+AGG 0.526111 7.2:-41753343 None:intergenic
GGACGAACTGAAGGCATACC+AGG 0.526431 7.2:-41753124 None:intergenic
ATGCCCATTCCTCCACCACC+TGG 0.528755 7.2:+41753325 MS.gene46089:CDS
AGAAAGAATACAAATGGCTA+TGG 0.530036 7.2:+41752346 MS.gene46089:CDS
GATAGGAGAAACCACAAACT+TGG 0.531209 7.2:-41752705 None:intergenic
GTGCATGCCTGGTCTTGGTG+GGG 0.532518 7.2:-41753242 None:intergenic
TATGCATGATAGGGATCAGA+TGG 0.533403 7.2:-41751834 None:intergenic
TATTCTAATCCTAATAGCAT+TGG 0.533446 7.2:+41753208 MS.gene46089:CDS
TTTGACAGAATTGACAAGTA+GGG 0.533631 7.2:+41752094 MS.gene46089:CDS
ATCATCCCTGATGGTGGATG+AGG 0.533964 7.2:-41753376 None:intergenic
GAAGGCATACCAGGTCTTGG+AGG 0.534350 7.2:-41753115 None:intergenic
AGTACAAAGAACAGAAAGAA+AGG 0.535684 7.2:+41752792 MS.gene46089:CDS
ACTGAAGGCATACCAGGTCT+TGG 0.536230 7.2:-41753118 None:intergenic
GGTTTCATGAAATGAAATTG+GGG 0.538125 7.2:-41752128 None:intergenic
TCCTCAAGGGTCAATGGAGG+AGG 0.541375 7.2:-41752434 None:intergenic
TCGAGAAACCACTCTGGCAC+AGG 0.543441 7.2:+41752829 MS.gene46089:CDS
TCTCTTTATCACCTCCTCAA+GGG 0.544098 7.2:-41752447 None:intergenic
CCTTGCCAATGCATATTCAA+GGG 0.544711 7.2:+41752181 MS.gene46089:CDS
AATGTAAACATGCTGTGAGT+TGG 0.547838 7.2:-41752149 None:intergenic
GATAGGGATCAGATGGATTG+AGG 0.547989 7.2:-41751827 None:intergenic
CAAAACCCTTGAATATGCAT+TGG 0.548056 7.2:-41752186 None:intergenic
CACCACGCTCTCTCAAGGCT+AGG 0.548324 7.2:-41753789 None:intergenic
TCCCCAAGATTTCCATCAGT+GGG 0.549023 7.2:-41751621 None:intergenic
AGTTTGGAAGACAATGATGA+AGG 0.550080 7.2:+41752578 MS.gene46089:CDS
GGAGCGGGTAGAGGAAGTAT+AGG 0.550091 7.2:-41751597 None:intergenic
CAATCTTTGTCTGAAACTGT+TGG 0.550457 7.2:+41753634 MS.gene46089:CDS
GTGAACTGAGATCCAGGTGG+TGG 0.552277 7.2:-41753337 None:intergenic
GATGGTCACAGCGGTAGTAT+TGG 0.553821 7.2:+41752992 MS.gene46089:CDS
CCCTTGAATATGCATTGGCA+AGG 0.554951 7.2:-41752181 None:intergenic
ATGTGTGAATGGGCTGGAAT+GGG 0.557358 7.2:+41752274 MS.gene46089:CDS
TGCTTGAAAGATGTGTGAAT+GGG 0.557641 7.2:+41752264 MS.gene46089:CDS
GTCACAAAATATTGGAAGTG+AGG 0.557834 7.2:+41753036 MS.gene46089:CDS
AACTGTATACTGCTCAACCT+CGG 0.558211 7.2:-41751988 None:intergenic
TGAAAGATGTGTGAATGGGC+TGG 0.558858 7.2:+41752268 MS.gene46089:CDS
TCAGCAGTATCTTCTTCCAT+AGG 0.558891 7.2:-41752482 None:intergenic
TCCAATAGTTCTAGTGTGTG+TGG 0.560378 7.2:-41751679 None:intergenic
ACTGGAAGAGACCAGAAGAC+AGG 0.560860 7.2:+41752660 MS.gene46089:CDS
GGCATACCAGGTCTTGGAGG+AGG 0.561127 7.2:-41753112 None:intergenic
ACATATATACTGATGCGAGC+AGG 0.561433 7.2:-41753559 None:intergenic
GTGTGTGTGGCAACAGTTGT+CGG 0.561561 7.2:-41751666 None:intergenic
GTGCTTGAAAGATGTGTGAA+TGG 0.563862 7.2:+41752263 MS.gene46089:CDS
AGCTCCTCCCTTGTTTCCAG+AGG 0.565510 7.2:+41753459 MS.gene46089:CDS
AGCAGGGAGTTGAATCTCCC+CGG 0.565840 7.2:-41753677 None:intergenic
AAAGCTAGTCCAGGTGGTGG+CGG 0.566441 7.2:-41753151 None:intergenic
CAATCCTAATCGGTGGTTCA+CGG 0.567153 7.2:-41752631 None:intergenic
ATCCCCACCGCCGCCTCCTG+AGG 0.567346 7.2:+41753435 MS.gene46089:CDS
TCTACCACCACGCTCTCTCA+AGG 0.569307 7.2:-41753794 None:intergenic
AGCATTCACAAGAGCACGCT+AGG 0.576104 7.2:+41752297 MS.gene46089:CDS
CTCCCCAAGATTTCCATCAG+TGG 0.579945 7.2:-41751622 None:intergenic
TGCTGATAATATGCATGATA+GGG 0.580063 7.2:-41751843 None:intergenic
TGGTAACGATGGAGCAACTA+CGG 0.582435 7.2:+41751911 MS.gene46089:CDS
AGTAGAAATGGAAATGGACG+AGG 0.582780 7.2:+41752517 MS.gene46089:CDS
TTTGATGAAGGAAATCTCAA+AGG 0.585080 7.2:+41753589 MS.gene46089:CDS
GTTTGGAAGACAATGATGAA+GGG 0.585538 7.2:+41752579 MS.gene46089:CDS
CCTGATGGTGGATGAGGGTG+AGG 0.585720 7.2:-41753370 None:intergenic
TCCCACTGATGGAAATCTTG+GGG 0.587594 7.2:+41751620 MS.gene46089:CDS
GGATTGAGGAAATTAAACTT+GGG 0.589490 7.2:-41751813 None:intergenic
GCTGCACCTCCTCCAAGACC+TGG 0.589894 7.2:+41753106 MS.gene46089:CDS
CCTAAGCAGGTTATATGGGA+TGG 0.590606 7.2:+41752974 MS.gene46089:CDS
AGCATTGGAAACCTCTTCCT+CGG 0.590624 7.2:-41752915 None:intergenic
ACCACGCTCTCTCAAGGCTA+GGG 0.592917 7.2:-41753788 None:intergenic
GAGGCCCAGCTTGTTGAAGA+GGG 0.593577 7.2:+41752542 MS.gene46089:CDS
GAGGAGGTGCAGCAGAACCA+AGG 0.594853 7.2:-41753096 None:intergenic
TTCAAAGCTAGTCCAGGTGG+TGG 0.596324 7.2:-41753154 None:intergenic
TCCCTAGCCTTGAGAGAGCG+TGG 0.597079 7.2:+41753787 MS.gene46089:CDS
GGTAGATTCAAAGCTAGTCC+AGG 0.601016 7.2:-41753160 None:intergenic
AGATACTGCTGAGTTAGGGA+AGG 0.605643 7.2:+41752493 MS.gene46089:CDS
TGAAACTGTTGGCAGCCTGA+AGG 0.606065 7.2:+41753645 MS.gene46089:CDS
CTCACCCTCATCCACCATCA+GGG 0.607170 7.2:+41753371 MS.gene46089:CDS
AAGGGAGGAGCTTCCTCAGG+AGG 0.607480 7.2:-41753448 None:intergenic
TTCTTCACAATCCTAATCGG+TGG 0.607876 7.2:-41752638 None:intergenic
TGGAAAGCCAGGCTTTCTCA+AGG 0.611679 7.2:+41753717 MS.gene46089:CDS
CCATTATTGATAAAGCCTCT+CGG 0.611957 7.2:+41751730 MS.gene46089:CDS
GGCGGTGGGGATACTCCTTG+AGG 0.612815 7.2:-41753424 None:intergenic
ATAAGCATCATCCCTGATGG+TGG 0.613914 7.2:-41753382 None:intergenic
TCTTGGGGAGGAGGTGATCG+AGG 0.614190 7.2:+41751635 MS.gene46089:CDS
ATTTCCATCAGTGGGAGGAG+CGG 0.614809 7.2:-41751613 None:intergenic
AAACCTGCACCGGAAACTGA+TGG 0.615397 7.2:+41751891 MS.gene46089:CDS
CACTGATGGAAATCTTGGGG+AGG 0.616691 7.2:+41751623 MS.gene46089:CDS
ACCATAAGCATCATCCCTGA+TGG 0.617198 7.2:-41753385 None:intergenic
GGAATTGATGGATGCATTGG+GGG 0.617363 7.2:-41753286 None:intergenic
CATCCACCACCTCCACCTCA+AGG 0.617512 7.2:+41753409 MS.gene46089:CDS
GCTAACAAGCAGAAATTGAG+TGG 0.618988 7.2:+41753697 MS.gene46089:CDS
TTCATCATCCTGTGCCAGAG+TGG 0.619478 7.2:-41752837 None:intergenic
TCTGGTTCCTCTGGAAACAA+GGG 0.620399 7.2:-41753466 None:intergenic
TCCTCCATTGACCCTTGAGG+AGG 0.620640 7.2:+41752436 MS.gene46089:CDS
AGAAGCCTGATATTTCTGCC+CGG 0.622543 7.2:+41751934 MS.gene46089:CDS
ACCTCCTCCATTGACCCTTG+AGG 0.623113 7.2:+41752433 MS.gene46089:CDS
GTTTCATGAAATGAAATTGG+GGG 0.624393 7.2:-41752127 None:intergenic
TCAATTCCTATGAATAACCA+AGG 0.629776 7.2:+41753301 MS.gene46089:CDS
AGGAATTGATGGATGCATTG+GGG 0.631433 7.2:-41753287 None:intergenic
ATTCACACATCTTTCAAGCA+CGG 0.633398 7.2:-41752261 None:intergenic
TCCTGAAGGCATTACAAGGG+AGG 0.633482 7.2:+41752016 MS.gene46089:CDS
GGCGGAATAGGACGAACTGA+AGG 0.633577 7.2:-41753133 None:intergenic
GATCCAGAAATTTATCCTCA+GGG 0.634230 7.2:-41753525 None:intergenic
TCGTAGTCAGAAACCTGCAC+CGG 0.636446 7.2:+41751881 MS.gene46089:CDS
CCTTGAATATGCATTGGCAA+GGG 0.639644 7.2:-41752180 None:intergenic
CAGAGGAACCAGAACCAAAG+AGG 0.642866 7.2:+41753476 MS.gene46089:CDS
TTTCCTTACTGGTTTAAACC+GGG 0.644189 7.2:-41751952 None:intergenic
CTTGCACATTACAATGTCAG+TGG 0.646215 7.2:+41753751 MS.gene46089:CDS
AGTAGACTTTGCTGATGATG+AGG 0.647823 7.2:+41752400 MS.gene46089:CDS
GGTTCCTCTGGAAACAAGGG+AGG 0.650047 7.2:-41753463 None:intergenic
GGTGGGGATACTCCTTGAGG+TGG 0.652903 7.2:-41753421 None:intergenic
ACCTCCTCAAGGGTCAATGG+AGG 0.655749 7.2:-41752437 None:intergenic
AAATTTCTGGATCAGCATCA+GGG 0.656993 7.2:+41753535 MS.gene46089:CDS
CAAAATTCGAGAAACCACTC+TGG 0.660209 7.2:+41752823 MS.gene46089:CDS
CCGGAAACTGATGGTAACGA+TGG 0.662265 7.2:+41751900 MS.gene46089:CDS
GCTTCCTGAAGGCATTACAA+GGG 0.666795 7.2:+41752013 MS.gene46089:CDS
TCATCCCTGATGGTGGATGA+GGG 0.667117 7.2:-41753375 None:intergenic
CGATTCTGCTCTGATCCCTG+AGG 0.667531 7.2:+41753510 MS.gene46089:CDS
GTATACTGCTCAACCTCGGG+AGG 0.668295 7.2:-41751984 None:intergenic
CCAAGATTTCCATCAGTGGG+AGG 0.670695 7.2:-41751618 None:intergenic
GCACATTACAATGTCAGTGG+AGG 0.674142 7.2:+41753754 MS.gene46089:CDS
TATACAGTTAGGCTTCCTGA+AGG 0.674309 7.2:+41752002 MS.gene46089:CDS
GAAAGTACTTGATCCTCCCG+AGG 0.687940 7.2:+41751971 MS.gene46089:CDS
AGATTCAAAGCTAGTCCAGG+TGG 0.698870 7.2:-41753157 None:intergenic
GAGGTGCAGCAGAACCAAGG+AGG 0.718372 7.2:-41753093 None:intergenic
CTAGCCTTGAGAGAGCGTGG+TGG 0.725849 7.2:+41753790 MS.gene46089:CDS
CTAGCTTTGAATCTACCTCG+TGG 0.727501 7.2:+41753166 MS.gene46089:CDS
GTTATATGGGATGGTCACAG+CGG 0.750758 7.2:+41752983 MS.gene46089:CDS
ATGTTATGTAAAGGACCACG+AGG 0.782735 7.2:-41753181 None:intergenic
GGAGTGAACTGAGATCCAGG+TGG 0.832532 7.2:-41753340 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AGATTTCCTTCATCAAAATT+AGG - chr7.2:41753586-41753605 None:intergenic 25.0%
! GAAATCTCAAAAAACATTGT+TGG + chr7.2:41752857-41752876 MS.gene46089:CDS 25.0%
! GAATATTGCATGTTATGTAA+AGG - chr7.2:41753193-41753212 None:intergenic 25.0%
! TATTCTAATCCTAATAGCAT+TGG + chr7.2:41753208-41753227 MS.gene46089:CDS 25.0%
! TGGTTTCATGAAATGAAATT+GGG - chr7.2:41752132-41752151 None:intergenic 25.0%
! TTGGTTTCATGAAATGAAAT+TGG - chr7.2:41752133-41752152 None:intergenic 25.0%
!!! TATGTTCCTAATTTTGATGA+AGG + chr7.2:41753577-41753596 MS.gene46089:CDS 25.0%
!!! TCAATAATGGTTTTAATGTC+TGG - chr7.2:41751720-41751739 None:intergenic 25.0%
AAAGCTTACAACACAATTTG+TGG + chr7.2:41752052-41752071 MS.gene46089:CDS 30.0%
AATGAATCTAAAAACCTCCT+TGG + chr7.2:41753079-41753098 MS.gene46089:CDS 30.0%
ACTTGTCAATTCTGTCAAAA+AGG - chr7.2:41752093-41752112 None:intergenic 30.0%
AGAAAGAATACAAATGGCTA+TGG + chr7.2:41752346-41752365 MS.gene46089:CDS 30.0%
AGAGCAAGAAAGAATACAAA+TGG + chr7.2:41752340-41752359 MS.gene46089:CDS 30.0%
AGTACAAAGAACAGAAAGAA+AGG + chr7.2:41752792-41752811 MS.gene46089:CDS 30.0%
CAAGCAATGTCACAAAATAT+TGG + chr7.2:41753028-41753047 MS.gene46089:CDS 30.0%
GGATTGAGGAAATTAAACTT+GGG - chr7.2:41751816-41751835 None:intergenic 30.0%
GGTTTCATGAAATGAAATTG+GGG - chr7.2:41752131-41752150 None:intergenic 30.0%
GTTTCATGAAATGAAATTGG+GGG - chr7.2:41752130-41752149 None:intergenic 30.0%
TCAATTCCTATGAATAACCA+AGG + chr7.2:41753301-41753320 MS.gene46089:CDS 30.0%
TCTTTCTGTTCTTTGTACTT+CGG - chr7.2:41752791-41752810 None:intergenic 30.0%
TGCTGATAATATGCATGATA+GGG - chr7.2:41751846-41751865 None:intergenic 30.0%
TGGATTGAGGAAATTAAACT+TGG - chr7.2:41751817-41751836 None:intergenic 30.0%
TGGTTATTCATAGGAATTGA+TGG - chr7.2:41753301-41753320 None:intergenic 30.0%
TGTTCTGACATTTCACTAAT+AGG - chr7.2:41752746-41752765 None:intergenic 30.0%
TTTGACAGAATTGACAAGTA+GGG + chr7.2:41752094-41752113 MS.gene46089:CDS 30.0%
TTTGATGAAGGAAATCTCAA+AGG + chr7.2:41753589-41753608 MS.gene46089:CDS 30.0%
! CAATATTTTGTGACATTGCT+TGG - chr7.2:41753030-41753049 None:intergenic 30.0%
! TTTTGACAGAATTGACAAGT+AGG + chr7.2:41752093-41752112 MS.gene46089:CDS 30.0%
!!! ATAATGGTTTTAATGTCTGG+AGG - chr7.2:41751717-41751736 None:intergenic 30.0%
!!! TAATGGTTTTAATGTCTGGA+GGG - chr7.2:41751716-41751735 None:intergenic 30.0%
AAATCTCAAAGGACAAGTTC+TGG + chr7.2:41753600-41753619 MS.gene46089:CDS 35.0%
AAGAAGATACTGCTGAGTTA+GGG + chr7.2:41752489-41752508 MS.gene46089:CDS 35.0%
AAGGGAATAAGAGTGAAGTT+AGG + chr7.2:41752597-41752616 MS.gene46089:CDS 35.0%
AATGTAAACATGCTGTGAGT+TGG - chr7.2:41752152-41752171 None:intergenic 35.0%
AATTTCAGCCTTAACAGCAT+TGG - chr7.2:41752933-41752952 None:intergenic 35.0%
AGGGAATAAGAGTGAAGTTA+GGG + chr7.2:41752598-41752617 MS.gene46089:CDS 35.0%
AGTTTGGAAGACAATGATGA+AGG + chr7.2:41752578-41752597 MS.gene46089:CDS 35.0%
ATTCACACATCTTTCAAGCA+CGG - chr7.2:41752264-41752283 None:intergenic 35.0%
CAAAACCCTTGAATATGCAT+TGG - chr7.2:41752189-41752208 None:intergenic 35.0%
CAGTTCTTCACAATCCTAAT+CGG - chr7.2:41752644-41752663 None:intergenic 35.0%
CCATTATTGATAAAGCCTCT+CGG + chr7.2:41751730-41751749 MS.gene46089:CDS 35.0%
GAAATTAAACTTGGGATTGC+TGG - chr7.2:41751808-41751827 None:intergenic 35.0%
GAAGGAAGTAGAAATGGAAA+TGG + chr7.2:41752511-41752530 MS.gene46089:CDS 35.0%
GATCCAGAAATTTATCCTCA+GGG - chr7.2:41753528-41753547 None:intergenic 35.0%
GTCACAAAATATTGGAAGTG+AGG + chr7.2:41753036-41753055 MS.gene46089:CDS 35.0%
GTTTGGAAGACAATGATGAA+GGG + chr7.2:41752579-41752598 MS.gene46089:CDS 35.0%
TACAAATGGCTATGGTTGAT+TGG + chr7.2:41752354-41752373 MS.gene46089:CDS 35.0%
TAGTGATTCAACCAAGTTTG+TGG + chr7.2:41752694-41752713 MS.gene46089:CDS 35.0%
TCGGTAGTACCAAAAATATC+AGG - chr7.2:41752899-41752918 None:intergenic 35.0%
TGATCCAGAAATTTATCCTC+AGG - chr7.2:41753529-41753548 None:intergenic 35.0%
TGCTTGAAAGATGTGTGAAT+GGG + chr7.2:41752264-41752283 MS.gene46089:CDS 35.0%
! AAAACATTGTTGGACTTGCT+CGG + chr7.2:41752867-41752886 MS.gene46089:CDS 35.0%
! AAATTTCTGGATCAGCATCA+GGG + chr7.2:41753535-41753554 MS.gene46089:CDS 35.0%
! ATAGGAATTGATGGATGCAT+TGG - chr7.2:41753292-41753311 None:intergenic 35.0%
! ATGGTCTTGAATTCGAAAAG+AGG + chr7.2:41751766-41751785 MS.gene46089:CDS 35.0%
! CAATCTTTGTCTGAAACTGT+TGG + chr7.2:41753634-41753653 MS.gene46089:CDS 35.0%
! GTGCTGATAATATGCATGAT+AGG - chr7.2:41751847-41751866 None:intergenic 35.0%
! TAAATTTCTGGATCAGCATC+AGG + chr7.2:41753534-41753553 MS.gene46089:CDS 35.0%
! TAGGAATTGATGGATGCATT+GGG - chr7.2:41753291-41753310 None:intergenic 35.0%
! TCAATTTCTGCTTGTTAGCA+GGG - chr7.2:41753696-41753715 None:intergenic 35.0%
!! CTTTCCTTACTGGTTTAAAC+CGG - chr7.2:41751956-41751975 None:intergenic 35.0%
!! TTTCCTTACTGGTTTAAACC+GGG - chr7.2:41751955-41751974 None:intergenic 35.0%
!!! AATGGTTTTAATGTCTGGAG+GGG - chr7.2:41751715-41751734 None:intergenic 35.0%
!!! TGATATTTTTGGTACTACCG+AGG + chr7.2:41752898-41752917 MS.gene46089:CDS 35.0%
AAATGATGAGCAACCTAAGC+AGG + chr7.2:41752961-41752980 MS.gene46089:CDS 40.0%
AACTGTATACTGCTCAACCT+CGG - chr7.2:41751991-41752010 None:intergenic 40.0%
ACACAATTTGTGGCTCGTAA+TGG + chr7.2:41752062-41752081 MS.gene46089:CDS 40.0%
ACATATATACTGATGCGAGC+AGG - chr7.2:41753562-41753581 None:intergenic 40.0%
AGAGGTTTCCAATGCTGTTA+AGG + chr7.2:41752922-41752941 MS.gene46089:CDS 40.0%
AGCAACCTAAGCAGGTTATA+TGG + chr7.2:41752969-41752988 MS.gene46089:CDS 40.0%
AGCCTGAAGGAAAAAATTGC+CGG + chr7.2:41753658-41753677 MS.gene46089:CDS 40.0%
AGGTTGAGCAGTATACAGTT+AGG + chr7.2:41751991-41752010 MS.gene46089:CDS 40.0%
AGTAGAAATGGAAATGGACG+AGG + chr7.2:41752517-41752536 MS.gene46089:CDS 40.0%
ATATTGTCCTTGAGAAAGCC+TGG - chr7.2:41753727-41753746 None:intergenic 40.0%
ATGTTATGTAAAGGACCACG+AGG - chr7.2:41753184-41753203 None:intergenic 40.0%
ATTGGAAGGCCAATGCTATT+AGG - chr7.2:41753220-41753239 None:intergenic 40.0%
CAAAATTCGAGAAACCACTC+TGG + chr7.2:41752823-41752842 MS.gene46089:CDS 40.0%
CACAATTTGTGGCTCGTAAT+GGG + chr7.2:41752063-41752082 MS.gene46089:CDS 40.0%
CCTTGCCAATGCATATTCAA+GGG + chr7.2:41752181-41752200 MS.gene46089:CDS 40.0%
CGATTAGGATTGTGAAGAAC+TGG + chr7.2:41752642-41752661 MS.gene46089:CDS 40.0%
CTTGCACATTACAATGTCAG+TGG + chr7.2:41753751-41753770 MS.gene46089:CDS 40.0%
GAAGAAGATACTGCTGAGTT+AGG + chr7.2:41752488-41752507 MS.gene46089:CDS 40.0%
GAGAAGCAAGATAACACCTA+TGG + chr7.2:41752466-41752485 MS.gene46089:CDS 40.0%
GATAGGAGAAACCACAAACT+TGG - chr7.2:41752708-41752727 None:intergenic 40.0%
GATCCCTGAGGATAAATTTC+TGG + chr7.2:41753522-41753541 MS.gene46089:CDS 40.0%
GCAACCTAAGCAGGTTATAT+GGG + chr7.2:41752970-41752989 MS.gene46089:CDS 40.0%
GCTAACAAGCAGAAATTGAG+TGG + chr7.2:41753697-41753716 MS.gene46089:CDS 40.0%
GGATCAAGTACTTTCCTTAC+TGG - chr7.2:41751966-41751985 None:intergenic 40.0%
GGCATTCCTTGGTTATTCAT+AGG - chr7.2:41753310-41753329 None:intergenic 40.0%
GTGCTTGAAAGATGTGTGAA+TGG + chr7.2:41752263-41752282 MS.gene46089:CDS 40.0%
GTTAGGGAAGGAAGTAGAAA+TGG + chr7.2:41752505-41752524 MS.gene46089:CDS 40.0%
TATACAGTTAGGCTTCCTGA+AGG + chr7.2:41752002-41752021 MS.gene46089:CDS 40.0%
TATGCATGATAGGGATCAGA+TGG - chr7.2:41751837-41751856 None:intergenic 40.0%
TCAGCAGTATCTTCTTCCAT+AGG - chr7.2:41752485-41752504 None:intergenic 40.0%
TCGTCATACTTCATCCTCTT+TGG - chr7.2:41753493-41753512 None:intergenic 40.0%
TCTCTTTATCACCTCCTCAA+GGG - chr7.2:41752450-41752469 None:intergenic 40.0%
TTAAACCGGGCAGAAATATC+AGG - chr7.2:41751942-41751961 None:intergenic 40.0%
TTCTCTTTATCACCTCCTCA+AGG - chr7.2:41752451-41752470 None:intergenic 40.0%
TTCTTCACAATCCTAATCGG+TGG - chr7.2:41752641-41752660 None:intergenic 40.0%
TTTGTGGTTTCTCCTATCAC+TGG + chr7.2:41752710-41752729 MS.gene46089:CDS 40.0%
! AGGAATTGATGGATGCATTG+GGG - chr7.2:41753290-41753309 None:intergenic 40.0%
! AGTAGACTTTGCTGATGATG+AGG + chr7.2:41752400-41752419 MS.gene46089:CDS 40.0%
! CAGAGTGGTTTCTCGAATTT+TGG - chr7.2:41752825-41752844 None:intergenic 40.0%
! CCGAGAGGCTTTATCAATAA+TGG - chr7.2:41751733-41751752 None:intergenic 40.0%
! CCTTGAATATGCATTGGCAA+GGG - chr7.2:41752183-41752202 None:intergenic 40.0%
! CTCAATTTCTGCTTGTTAGC+AGG - chr7.2:41753697-41753716 None:intergenic 40.0%
! GGTTGATTGGCATGATTTTG+TGG + chr7.2:41752367-41752386 MS.gene46089:CDS 40.0%
! TACTTCATCCTCTTTGGTTC+TGG - chr7.2:41753487-41753506 None:intergenic 40.0%
! TCTCGGTTCGTTGCTAAAAA+TGG + chr7.2:41751747-41751766 MS.gene46089:CDS 40.0%
! TGATTGGCATGATTTTGTGG+TGG + chr7.2:41752370-41752389 MS.gene46089:CDS 40.0%
!! TCCAATAGTTCTAGTGTGTG+TGG - chr7.2:41751682-41751701 None:intergenic 40.0%
!!! ATGGTTTTAATGTCTGGAGG+GGG - chr7.2:41751714-41751733 None:intergenic 40.0%
!!! ATTTTTAGCAACGAACCGAG+AGG - chr7.2:41751748-41751767 None:intergenic 40.0%
AATGGAAATGGACGAGGAAG+AGG + chr7.2:41752523-41752542 MS.gene46089:CDS 45.0%
ACCATAAGCATCATCCCTGA+TGG - chr7.2:41753388-41753407 None:intergenic 45.0%
ACCATCAGGGATGATGCTTA+TGG + chr7.2:41753384-41753403 MS.gene46089:CDS 45.0%
ACTGTATACTGCTCAACCTC+GGG - chr7.2:41751990-41752009 None:intergenic 45.0%
AGATACTGCTGAGTTAGGGA+AGG + chr7.2:41752493-41752512 MS.gene46089:CDS 45.0%
AGATTCAAAGCTAGTCCAGG+TGG - chr7.2:41753160-41753179 None:intergenic 45.0%
ATAAGCATCATCCCTGATGG+TGG - chr7.2:41753385-41753404 None:intergenic 45.0%
CAATCCTAATCGGTGGTTCA+CGG - chr7.2:41752634-41752653 None:intergenic 45.0%
CAGAAATTGAGTGGAAAGCC+AGG + chr7.2:41753706-41753725 MS.gene46089:CDS 45.0%
CATTCCCTCTTCAACAAGCT+GGG - chr7.2:41752549-41752568 None:intergenic 45.0%
CCATCCCATATAACCTGCTT+AGG - chr7.2:41752977-41752996 None:intergenic 45.0%
CCATCGTTACCATCAGTTTC+CGG - chr7.2:41751903-41751922 None:intergenic 45.0%
CCCTTGCCAATGCATATTCA+AGG + chr7.2:41752180-41752199 MS.gene46089:CDS 45.0%
CCTAAGCAGGTTATATGGGA+TGG + chr7.2:41752974-41752993 MS.gene46089:CDS 45.0%
CCTGAAGGAAAAAATTGCCG+GGG + chr7.2:41753660-41753679 MS.gene46089:CDS 45.0%
CTCCCACTGATGGAAATCTT+GGG + chr7.2:41751619-41751638 MS.gene46089:CDS 45.0%
GCACATTACAATGTCAGTGG+AGG + chr7.2:41753754-41753773 MS.gene46089:CDS 45.0%
GCCACACACACTAGAACTAT+TGG + chr7.2:41751678-41751697 MS.gene46089:CDS 45.0%
GCCTGAAGGAAAAAATTGCC+GGG + chr7.2:41753659-41753678 MS.gene46089:CDS 45.0%
GGAATCAGTTCACCAGTGAT+AGG - chr7.2:41752725-41752744 None:intergenic 45.0%
GGGAATGAGAGATGCTAGTT+TGG + chr7.2:41752562-41752581 MS.gene46089:CDS 45.0%
GGTAGATTCAAAGCTAGTCC+AGG - chr7.2:41753163-41753182 None:intergenic 45.0%
GTTATATGGGATGGTCACAG+CGG + chr7.2:41752983-41753002 MS.gene46089:CDS 45.0%
TAAGGAGTGAACTGAGATCC+AGG - chr7.2:41753346-41753365 None:intergenic 45.0%
TCATTCCCTCTTCAACAAGC+TGG - chr7.2:41752550-41752569 None:intergenic 45.0%
TCCCACTGATGGAAATCTTG+GGG + chr7.2:41751620-41751639 MS.gene46089:CDS 45.0%
TCCCCAAGATTTCCATCAGT+GGG - chr7.2:41751624-41751643 None:intergenic 45.0%
TGAAAGATGTGTGAATGGGC+TGG + chr7.2:41752268-41752287 MS.gene46089:CDS 45.0%
! AGAAGCCTGATATTTCTGCC+CGG + chr7.2:41751934-41751953 MS.gene46089:CDS 45.0%
! AGCATTGGAAACCTCTTCCT+CGG - chr7.2:41752918-41752937 None:intergenic 45.0%
! CCCTTGAATATGCATTGGCA+AGG - chr7.2:41752184-41752203 None:intergenic 45.0%
! CGGACTCGTCCTGATATTTT+TGG + chr7.2:41752887-41752906 MS.gene46089:CDS 45.0%
! GGAATTGATGGATGCATTGG+GGG - chr7.2:41753289-41753308 None:intergenic 45.0%
! TCTGGTTCCTCTGGAAACAA+GGG - chr7.2:41753469-41753488 None:intergenic 45.0%
! TGGTAACGATGGAGCAACTA+CGG + chr7.2:41751911-41751930 MS.gene46089:CDS 45.0%
! TTTTGGTACTACCGAGGAAG+AGG + chr7.2:41752904-41752923 MS.gene46089:CDS 45.0%
!! AAGGGTTTTGATGCCTCCAA+AGG + chr7.2:41752199-41752218 MS.gene46089:CDS 45.0%
!! AGGGTTTTGATGCCTCCAAA+GGG + chr7.2:41752200-41752219 MS.gene46089:CDS 45.0%
!! ATGTGTGAATGGGCTGGAAT+GGG + chr7.2:41752274-41752293 MS.gene46089:CDS 45.0%
!! CTAGCTTTGAATCTACCTCG+TGG + chr7.2:41753166-41753185 MS.gene46089:CDS 45.0%
!! GATAGGGATCAGATGGATTG+AGG - chr7.2:41751830-41751849 None:intergenic 45.0%
!! GCTTCCTGAAGGCATTACAA+GGG + chr7.2:41752013-41752032 MS.gene46089:CDS 45.0%
!! TTCTGGTTCCTCTGGAAACA+AGG - chr7.2:41753470-41753489 None:intergenic 45.0%
!!! TGGTTTTAATGTCTGGAGGG+GGG - chr7.2:41751713-41751732 None:intergenic 45.0%
AAACCTGCACCGGAAACTGA+TGG + chr7.2:41751891-41751910 MS.gene46089:CDS 50.0%
ACTGGAAGAGACCAGAAGAC+AGG + chr7.2:41752660-41752679 MS.gene46089:CDS 50.0%
AGCTTCTCTGTCAACCCCTT+TGG - chr7.2:41752218-41752237 None:intergenic 50.0%
ATCACCTCCTCAAGGGTCAA+TGG - chr7.2:41752443-41752462 None:intergenic 50.0%
ATTTCCATCAGTGGGAGGAG+CGG - chr7.2:41751616-41751635 None:intergenic 50.0%
CACTGATGGAAATCTTGGGG+AGG + chr7.2:41751623-41751642 MS.gene46089:CDS 50.0%
CAGAGGAACCAGAACCAAAG+AGG + chr7.2:41753476-41753495 MS.gene46089:CDS 50.0%
CCAAGATTTCCATCAGTGGG+AGG - chr7.2:41751621-41751640 None:intergenic 50.0%
CCTCCCACTGATGGAAATCT+TGG + chr7.2:41751618-41751637 MS.gene46089:CDS 50.0%
CTCCCCAAGATTTCCATCAG+TGG - chr7.2:41751625-41751644 None:intergenic 50.0%
CTGCCCGGTTTAAACCAGTA+AGG + chr7.2:41751949-41751968 MS.gene46089:CDS 50.0%
GATGGTCACAGCGGTAGTAT+TGG + chr7.2:41752992-41753011 MS.gene46089:CDS 50.0%
GGATGAGGGTGAGGAACATA+AGG - chr7.2:41753364-41753383 None:intergenic 50.0%
GTGTGTGTGGCAACAGTTGT+CGG - chr7.2:41751669-41751688 None:intergenic 50.0%
TCCTCCCTTGTAATGCCTTC+AGG - chr7.2:41752020-41752039 None:intergenic 50.0%
TCGTAGTCAGAAACCTGCAC+CGG + chr7.2:41751881-41751900 MS.gene46089:CDS 50.0%
TGAAACTGTTGGCAGCCTGA+AGG + chr7.2:41753645-41753664 MS.gene46089:CDS 50.0%
TGATGGAAATCTTGGGGAGG+AGG + chr7.2:41751626-41751645 MS.gene46089:CDS 50.0%
TGCACATGACGCAATCTCTC+CGG + chr7.2:41753260-41753279 MS.gene46089:CDS 50.0%
TGGAAAGCCAGGCTTTCTCA+AGG + chr7.2:41753717-41753736 MS.gene46089:CDS 50.0%
TTACCATCAGTTTCCGGTGC+AGG - chr7.2:41751897-41751916 None:intergenic 50.0%
TTCAAAGCTAGTCCAGGTGG+TGG - chr7.2:41753157-41753176 None:intergenic 50.0%
TTCATCATCCTGTGCCAGAG+TGG - chr7.2:41752840-41752859 None:intergenic 50.0%
TTCTCTGTCAACCCCTTTGG+AGG - chr7.2:41752215-41752234 None:intergenic 50.0%
! AACACCGTGAACCACCGATT+AGG + chr7.2:41752627-41752646 MS.gene46089:CDS 50.0%
! ACAAGAGCACGCTAGGCAAA+AGG + chr7.2:41752304-41752323 MS.gene46089:CDS 50.0%
! ACTGAAGGCATACCAGGTCT+TGG - chr7.2:41753121-41753140 None:intergenic 50.0%
! AGCATTCACAAGAGCACGCT+AGG + chr7.2:41752297-41752316 MS.gene46089:CDS 50.0%
! ATTGATGGATGCATTGGGGG+TGG - chr7.2:41753286-41753305 None:intergenic 50.0%
! CCGGAAACTGATGGTAACGA+TGG + chr7.2:41751900-41751919 MS.gene46089:CDS 50.0%
!! ATCATCCCTGATGGTGGATG+AGG - chr7.2:41753379-41753398 None:intergenic 50.0%
!! CTCTTTGGTTCTGGTTCCTC+TGG - chr7.2:41753478-41753497 None:intergenic 50.0%
!! GAAAGTACTTGATCCTCCCG+AGG + chr7.2:41751971-41751990 MS.gene46089:CDS 50.0%
!! GATGTGTGAATGGGCTGGAA+TGG + chr7.2:41752273-41752292 MS.gene46089:CDS 50.0%
!! GGCTTCCTGAAGGCATTACA+AGG + chr7.2:41752012-41752031 MS.gene46089:CDS 50.0%
!! GGGTTTTGATGCCTCCAAAG+GGG + chr7.2:41752201-41752220 MS.gene46089:CDS 50.0%
!! TCATCCCTGATGGTGGATGA+GGG - chr7.2:41753378-41753397 None:intergenic 50.0%
!! TCCTGAAGGCATTACAAGGG+AGG + chr7.2:41752016-41752035 MS.gene46089:CDS 50.0%
!!! CCCCGGCAATTTTTTCCTTC+AGG - chr7.2:41753663-41753682 None:intergenic 50.0%
AACAAGGGAGGAGCTTCCTC+AGG - chr7.2:41753454-41753473 None:intergenic 55.0%
ACCACGCTCTCTCAAGGCTA+GGG - chr7.2:41753791-41753810 None:intergenic 55.0%
ACCTCCTCAAGGGTCAATGG+AGG - chr7.2:41752440-41752459 None:intergenic 55.0%
ACCTCCTCCATTGACCCTTG+AGG + chr7.2:41752433-41752452 MS.gene46089:CDS 55.0%
AGCAGGGAGTTGAATCTCCC+CGG - chr7.2:41753680-41753699 None:intergenic 55.0%
CGATTCTGCTCTGATCCCTG+AGG + chr7.2:41753510-41753529 MS.gene46089:CDS 55.0%
CTCACCCTCATCCACCATCA+GGG + chr7.2:41753371-41753390 MS.gene46089:CDS 55.0%
GATACTCCTTGAGGTGGAGG+TGG - chr7.2:41753418-41753437 None:intergenic 55.0%
GATTGCGTCATGTGCATGCC+TGG - chr7.2:41753256-41753275 None:intergenic 55.0%
GGAGTGAACTGAGATCCAGG+TGG - chr7.2:41753343-41753362 None:intergenic 55.0%
GGCGGAATAGGACGAACTGA+AGG - chr7.2:41753136-41753155 None:intergenic 55.0%
GTATACTGCTCAACCTCGGG+AGG - chr7.2:41751987-41752006 None:intergenic 55.0%
GTCATGTGCATGCCTGGTCT+TGG - chr7.2:41753250-41753269 None:intergenic 55.0%
GTCTTGGTGGGGGAATTGGA+AGG - chr7.2:41753234-41753253 None:intergenic 55.0%
GTGAACTGAGATCCAGGTGG+TGG - chr7.2:41753340-41753359 None:intergenic 55.0%
GTGGAGGAATGGGCATTCCT+TGG - chr7.2:41753321-41753340 None:intergenic 55.0%
TCCTCAAGGGTCAATGGAGG+AGG - chr7.2:41752437-41752456 None:intergenic 55.0%
TCCTCCATTGACCCTTGAGG+AGG + chr7.2:41752436-41752455 MS.gene46089:CDS 55.0%
TCGAGAAACCACTCTGGCAC+AGG + chr7.2:41752829-41752848 MS.gene46089:CDS 55.0%
TCTACCACCACGCTCTCTCA+AGG - chr7.2:41753797-41753816 None:intergenic 55.0%
TCTGCACGAAGCCTGTCTTC+TGG - chr7.2:41752674-41752693 None:intergenic 55.0%
TTTCCATCAGTGGGAGGAGC+GGG - chr7.2:41751615-41751634 None:intergenic 55.0%
! AAAGCTAGTCCAGGTGGTGG+CGG - chr7.2:41753154-41753173 None:intergenic 55.0%
! AACTGAGATCCAGGTGGTGG+AGG - chr7.2:41753337-41753356 None:intergenic 55.0%
! AGCTCCTCCCTTGTTTCCAG+AGG + chr7.2:41753459-41753478 MS.gene46089:CDS 55.0%
! GAAGGCATACCAGGTCTTGG+AGG - chr7.2:41753118-41753137 None:intergenic 55.0%
! GGACGAACTGAAGGCATACC+AGG - chr7.2:41753127-41753146 None:intergenic 55.0%
! GGAGCGGGTAGAGGAAGTAT+AGG - chr7.2:41751600-41751619 None:intergenic 55.0%
! GGTTCCTCTGGAAACAAGGG+AGG - chr7.2:41753466-41753485 None:intergenic 55.0%
!! AGAGGCCCAGCTTGTTGAAG+AGG + chr7.2:41752541-41752560 MS.gene46089:CDS 55.0%
!! AGATCCAGGTGGTGGAGGAA+TGG - chr7.2:41753332-41753351 None:intergenic 55.0%
!! ATGTGCATGCCTGGTCTTGG+TGG - chr7.2:41753247-41753266 None:intergenic 55.0%
!! GAGGCCCAGCTTGTTGAAGA+GGG + chr7.2:41752542-41752561 MS.gene46089:CDS 55.0%
!! GATCCAGGTGGTGGAGGAAT+GGG - chr7.2:41753331-41753350 None:intergenic 55.0%
!! TGTGCATGCCTGGTCTTGGT+GGG - chr7.2:41753246-41753265 None:intergenic 55.0%
AAGGGAGGAGCTTCCTCAGG+AGG - chr7.2:41753451-41753470 None:intergenic 60.0%
ACTCCTTGAGGTGGAGGTGG+TGG - chr7.2:41753415-41753434 None:intergenic 60.0%
ATGCCCATTCCTCCACCACC+TGG + chr7.2:41753325-41753344 MS.gene46089:CDS 60.0%
ATGGATGCATTGGGGGTGGC+CGG - chr7.2:41753282-41753301 None:intergenic 60.0%
CACCACGCTCTCTCAAGGCT+AGG - chr7.2:41753792-41753811 None:intergenic 60.0%
CATCCACCACCTCCACCTCA+AGG + chr7.2:41753409-41753428 MS.gene46089:CDS 60.0%
CCAATTCCCCCACCAAGACC+AGG + chr7.2:41753235-41753254 MS.gene46089:CDS 60.0%
CCTCACCCTCATCCACCATC+AGG + chr7.2:41753370-41753389 MS.gene46089:CDS 60.0%
GAGGTGCAGCAGAACCAAGG+AGG - chr7.2:41753096-41753115 None:intergenic 60.0%
GGCATACCAGGTCTTGGAGG+AGG - chr7.2:41753115-41753134 None:intergenic 60.0%
GGGGATACTCCTTGAGGTGG+AGG - chr7.2:41753421-41753440 None:intergenic 60.0%
GGTGGGGATACTCCTTGAGG+TGG - chr7.2:41753424-41753443 None:intergenic 60.0%
TCTTGGGGAGGAGGTGATCG+AGG + chr7.2:41751635-41751654 MS.gene46089:CDS 60.0%
! GAGGAGGTGCAGCAGAACCA+AGG - chr7.2:41753099-41753118 None:intergenic 60.0%
!! AGTCCAGGTGGTGGCGGAAT+AGG - chr7.2:41753148-41753167 None:intergenic 60.0%
!! CCTGATGGTGGATGAGGGTG+AGG - chr7.2:41753373-41753392 None:intergenic 60.0%
!! CCTGGTCTTGGTGGGGGAAT+TGG - chr7.2:41753238-41753257 None:intergenic 60.0%
!! CTAGCCTTGAGAGAGCGTGG+TGG + chr7.2:41753790-41753809 MS.gene46089:CDS 60.0%
!! GTGCATGCCTGGTCTTGGTG+GGG - chr7.2:41753245-41753264 None:intergenic 60.0%
!! TCCCTAGCCTTGAGAGAGCG+TGG + chr7.2:41753787-41753806 MS.gene46089:CDS 60.0%
!! TGCATGCCTGGTCTTGGTGG+GGG - chr7.2:41753244-41753263 None:intergenic 60.0%
CGTCCTATTCCGCCACCACC+TGG + chr7.2:41753142-41753161 MS.gene46089:CDS 65.0%
CTACCCGCTCCTCCCACTGA+TGG + chr7.2:41751609-41751628 MS.gene46089:CDS 65.0%
GCTGCACCTCCTCCAAGACC+TGG + chr7.2:41753106-41753125 MS.gene46089:CDS 65.0%
GGAGGAGCTTCCTCAGGAGG+CGG - chr7.2:41753448-41753467 None:intergenic 65.0%
GGCGGTGGGGATACTCCTTG+AGG - chr7.2:41753427-41753446 None:intergenic 65.0%
TCAGTGGGAGGAGCGGGTAG+AGG - chr7.2:41751609-41751628 None:intergenic 65.0%
CTTCCTCAGGAGGCGGCGGT+GGG - chr7.2:41753441-41753460 None:intergenic 70.0%
GGAGCTTCCTCAGGAGGCGG+CGG - chr7.2:41753445-41753464 None:intergenic 70.0%
TTCCTCAGGAGGCGGCGGTG+GGG - chr7.2:41753440-41753459 None:intergenic 70.0%
ATCCCCACCGCCGCCTCCTG+AGG + chr7.2:41753435-41753454 MS.gene46089:CDS 75.0%
GCTTCCTCAGGAGGCGGCGG+TGG - chr7.2:41753442-41753461 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 41751594 41753825 41751594 ID=MS.gene46089
chr7.2 mRNA 41751594 41753825 41751594 ID=MS.gene46089.t1;Parent=MS.gene46089
chr7.2 exon 41751594 41753825 41751594 ID=MS.gene46089.t1.exon1;Parent=MS.gene46089.t1
chr7.2 CDS 41751594 41753825 41751594 ID=cds.MS.gene46089.t1;Parent=MS.gene46089.t1
Gene Sequence

>MS.gene46089

ATGCCTATACTTCCTCTACCCGCTCCTCCCACTGATGGAAATCTTGGGGAGGAGGTGATCGAGGAAGCAGCACCGACAACTGTTGCCACACACACTAGAACTATTGGAATAATTCACCCCCCTCCAGACATTAAAACCATTATTGATAAAGCCTCTCGGTTCGTTGCTAAAAATGGTCTTGAATTCGAAAAGAGGATTATTGCTAATTATGCCAGCAATCCCAAGTTTAATTTCCTCAATCCATCTGATCCCTATCATGCATATTATCAGCACATGCTTTCTGAGTTTCGTAGTCAGAAACCTGCACCGGAAACTGATGGTAACGATGGAGCAACTACGGAGAAGCCTGATATTTCTGCCCGGTTTAAACCAGTAAGGAAAGTACTTGATCCTCCCGAGGTTGAGCAGTATACAGTTAGGCTTCCTGAAGGCATTACAAGGGAGGAGCTAGATATAATAAAGCTTACAACACAATTTGTGGCTCGTAATGGGAAATCCTTTTTGACAGAATTGACAAGTAGGGAGATTAATAACCCCCAATTTCATTTCATGAAACCAACTCACAGCATGTTTACATTTTTCACTTCCCTTGCCAATGCATATTCAAGGGTTTTGATGCCTCCAAAGGGGTTGACAGAGAAGCTAAAGAAGAGTGTCGACAAGACTACCGTGCTTGAAAGATGTGTGAATGGGCTGGAATGGGAGCATTCACAAGAGCACGCTAGGCAAAAGGCTGATGATGAGATAGAGCAAGAAAGAATACAAATGGCTATGGTTGATTGGCATGATTTTGTGGTGGTTGAATCAGTAGACTTTGCTGATGATGAGGATGAAGAATTACCTCCTCCATTGACCCTTGAGGAGGTGATAAAGAGAAGCAAGATAACACCTATGGAAGAAGATACTGCTGAGTTAGGGAAGGAAGTAGAAATGGAAATGGACGAGGAAGAGGCCCAGCTTGTTGAAGAGGGAATGAGAGATGCTAGTTTGGAAGACAATGATGAAGGGAATAAGAGTGAAGTTAGGGTTACTGAACACCGTGAACCACCGATTAGGATTGTGAAGAACTGGAAGAGACCAGAAGACAGGCTTCGTGCAGATAGTGATTCAACCAAGTTTGTGGTTTCTCCTATCACTGGTGAACTGATTCCTATTAGTGAAATGTCAGAACACATGCGAATTTCTCTCATTGATCCGAAGTACAAAGAACAGAAAGAAAGGATGTTTGCCAAAATTCGAGAAACCACTCTGGCACAGGATGATGAAATCTCAAAAAACATTGTTGGACTTGCTCGGACTCGTCCTGATATTTTTGGTACTACCGAGGAAGAGGTTTCCAATGCTGTTAAGGCTGAAATTGAGAAGAAAAATGATGAGCAACCTAAGCAGGTTATATGGGATGGTCACAGCGGTAGTATTGGTCGTATTGCAAACCAAGCAATGTCACAAAATATTGGAAGTGAGGATCAAAATGATGCTTATAATAATGAATCTAAAAACCTCCTTGGTTCTGCTGCACCTCCTCCAAGACCTGGTATGCCTTCAGTTCGTCCTATTCCGCCACCACCTGGACTAGCTTTGAATCTACCTCGTGGTCCTTTACATAACATGCAATATTCTAATCCTAATAGCATTGGCCTTCCAATTCCCCCACCAAGACCAGGCATGCACATGACGCAATCTCTCCGGCCACCCCCAATGCATCCATCAATTCCTATGAATAACCAAGGAATGCCCATTCCTCCACCACCTGGATCTCAGTTCACTCCTTATGTTCCTCACCCTCATCCACCATCAGGGATGATGCTTATGGTGCATCCACCACCTCCACCTCAAGGAGTATCCCCACCGCCGCCTCCTGAGGAAGCTCCTCCCTTGTTTCCAGAGGAACCAGAACCAAAGAGGATGAAGTATGACGATTCTGCTCTGATCCCTGAGGATAAATTTCTGGATCAGCATCAGGGACCTGCTCGCATCAGTATATATGTTCCTAATTTTGATGAAGGAAATCTCAAAGGACAAGTTCTGGAAATAACTGTGCAATCTTTGTCTGAAACTGTTGGCAGCCTGAAGGAAAAAATTGCCGGGGAGATTCAACTCCCTGCTAACAAGCAGAAATTGAGTGGAAAGCCAGGCTTTCTCAAGGACAATATGTCACTTGCACATTACAATGTCAGTGGAGGAGAAACTCTTTCCCTAGCCTTGAGAGAGCGTGGTGGTAGAAAGAGATGA
Protein sequence

>MS.gene46089.t1

MPILPLPAPPTDGNLGEEVIEEAAPTTVATHTRTIGIIHPPPDIKTIIDKASRFVAKNGLEFEKRIIANYASNPKFNFLNPSDPYHAYYQHMLSEFRSQKPAPETDGNDGATTEKPDISARFKPVRKVLDPPEVEQYTVRLPEGITREELDIIKLTTQFVARNGKSFLTELTSREINNPQFHFMKPTHSMFTFFTSLANAYSRVLMPPKGLTEKLKKSVDKTTVLERCVNGLEWEHSQEHARQKADDEIEQERIQMAMVDWHDFVVVESVDFADDEDEELPPPLTLEEVIKRSKITPMEEDTAELGKEVEMEMDEEEAQLVEEGMRDASLEDNDEGNKSEVRVTEHREPPIRIVKNWKRPEDRLRADSDSTKFVVSPITGELIPISEMSEHMRISLIDPKYKEQKERMFAKIRETTLAQDDEISKNIVGLARTRPDIFGTTEEEVSNAVKAEIEKKNDEQPKQVIWDGHSGSIGRIANQAMSQNIGSEDQNDAYNNESKNLLGSAAPPPRPGMPSVRPIPPPPGLALNLPRGPLHNMQYSNPNSIGLPIPPPRPGMHMTQSLRPPPMHPSIPMNNQGMPIPPPPGSQFTPYVPHPHPPSGMMLMVHPPPPPQGVSPPPPPEEAPPLFPEEPEPKRMKYDDSALIPEDKFLDQHQGPARISIYVPNFDEGNLKGQVLEITVQSLSETVGSLKEKIAGEIQLPANKQKLSGKPGFLKDNMSLAHYNVSGGETLSLALRERGGRKR