Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46301.t1 | XP_013449816.1 | 97.2 | 357 | 9 | 1 | 1 | 357 | 1 | 356 | 4.00E-197 | 697.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46301.t1 | A0A072U2B1 | 97.2 | 357 | 9 | 1 | 1 | 357 | 1 | 356 | 2.9e-197 | 697.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053189 | MS.gene46301 | 0.808528 | 2.96E-50 | -1.69E-46 |
| MS.gene054536 | MS.gene46301 | 0.834456 | 2.97E-56 | -1.69E-46 |
| MS.gene054537 | MS.gene46301 | 0.801813 | 7.54E-49 | -1.69E-46 |
| MS.gene05474 | MS.gene46301 | 0.845132 | 4.91E-59 | -1.69E-46 |
| MS.gene056849 | MS.gene46301 | 0.813842 | 2.09E-51 | -1.69E-46 |
| MS.gene058490 | MS.gene46301 | 0.801101 | 1.06E-48 | -1.69E-46 |
| MS.gene059872 | MS.gene46301 | -0.800338 | 1.51E-48 | -1.69E-46 |
| MS.gene060297 | MS.gene46301 | 0.823483 | 1.35E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46301.t1 | MTR_7g095960 | 97.199 | 357 | 9 | 1 | 1 | 357 | 1 | 356 | 0.0 | 710 |
| MS.gene46301.t1 | MTR_1g070970 | 61.351 | 370 | 108 | 9 | 1 | 356 | 1 | 349 | 1.25e-145 | 416 |
| MS.gene46301.t1 | MTR_1g076500 | 49.347 | 383 | 152 | 13 | 5 | 350 | 4 | 381 | 2.78e-99 | 299 |
| MS.gene46301.t1 | MTR_1g041155 | 45.358 | 377 | 159 | 11 | 5 | 357 | 4 | 357 | 7.22e-95 | 287 |
| MS.gene46301.t1 | MTR_7g083080 | 45.865 | 133 | 66 | 3 | 159 | 285 | 129 | 261 | 2.49e-34 | 129 |
| MS.gene46301.t1 | MTR_2g025520 | 36.771 | 223 | 125 | 5 | 73 | 285 | 43 | 259 | 4.49e-34 | 128 |
| MS.gene46301.t1 | MTR_8g093440 | 48.696 | 115 | 52 | 1 | 172 | 279 | 32 | 146 | 2.53e-33 | 123 |
| MS.gene46301.t1 | MTR_8g093440 | 47.934 | 121 | 51 | 2 | 166 | 279 | 93 | 208 | 4.93e-33 | 124 |
| MS.gene46301.t1 | MTR_4g132963 | 44.000 | 125 | 70 | 0 | 161 | 285 | 116 | 240 | 4.66e-32 | 122 |
| MS.gene46301.t1 | MTR_4g132940 | 44.000 | 125 | 70 | 0 | 161 | 285 | 116 | 240 | 4.66e-32 | 122 |
| MS.gene46301.t1 | MTR_4g132970 | 44.000 | 125 | 70 | 0 | 161 | 285 | 137 | 261 | 7.00e-32 | 122 |
| MS.gene46301.t1 | MTR_4g078310 | 38.514 | 148 | 80 | 2 | 152 | 288 | 107 | 254 | 1.70e-30 | 118 |
| MS.gene46301.t1 | MTR_8g012240 | 40.909 | 132 | 71 | 1 | 164 | 288 | 135 | 266 | 4.17e-28 | 112 |
| MS.gene46301.t1 | MTR_2g013780 | 39.516 | 124 | 69 | 1 | 168 | 285 | 151 | 274 | 7.27e-27 | 108 |
| MS.gene46301.t1 | MTR_4g088770 | 33.939 | 165 | 94 | 3 | 136 | 285 | 116 | 280 | 1.46e-26 | 108 |
| MS.gene46301.t1 | MTR_4g088760 | 37.903 | 124 | 71 | 1 | 168 | 285 | 210 | 333 | 3.19e-26 | 108 |
| MS.gene46301.t1 | MTR_7g053310 | 30.222 | 225 | 139 | 5 | 71 | 288 | 41 | 254 | 3.85e-25 | 103 |
| MS.gene46301.t1 | MTR_2g013880 | 34.921 | 126 | 76 | 1 | 164 | 283 | 147 | 272 | 4.56e-23 | 98.2 |
| MS.gene46301.t1 | MTR_5g008720 | 32.031 | 128 | 79 | 2 | 161 | 280 | 98 | 225 | 4.68e-20 | 88.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46301.t1 | AT3G22970 | 50.384 | 391 | 139 | 12 | 1 | 357 | 1 | 370 | 7.52e-110 | 325 |
| MS.gene46301.t1 | AT2G38820 | 54.915 | 295 | 110 | 9 | 1 | 284 | 1 | 283 | 3.90e-101 | 301 |
| MS.gene46301.t1 | AT4G14620 | 46.400 | 375 | 142 | 13 | 5 | 356 | 2 | 340 | 2.10e-93 | 282 |
| MS.gene46301.t1 | AT3G22970 | 50.391 | 256 | 88 | 5 | 123 | 357 | 22 | 259 | 2.27e-72 | 226 |
| MS.gene46301.t1 | AT3G54550 | 47.423 | 291 | 125 | 10 | 1 | 283 | 1 | 271 | 4.61e-72 | 226 |
| MS.gene46301.t1 | AT2G38820 | 50.000 | 202 | 78 | 9 | 1 | 191 | 1 | 190 | 3.63e-47 | 159 |
| MS.gene46301.t1 | AT3G25240 | 36.327 | 245 | 130 | 8 | 50 | 283 | 16 | 245 | 1.07e-34 | 129 |
| MS.gene46301.t1 | AT2G39650 | 39.024 | 164 | 85 | 4 | 159 | 307 | 46 | 209 | 2.05e-33 | 124 |
| MS.gene46301.t1 | AT2G39650 | 40.816 | 147 | 73 | 3 | 159 | 291 | 108 | 254 | 3.97e-33 | 125 |
| MS.gene46301.t1 | AT3G07350 | 45.312 | 128 | 64 | 1 | 164 | 285 | 139 | 266 | 2.40e-32 | 123 |
| MS.gene46301.t1 | AT4G32480 | 37.952 | 166 | 80 | 3 | 136 | 283 | 85 | 245 | 1.13e-28 | 113 |
| MS.gene46301.t1 | AT1G62420 | 43.802 | 121 | 65 | 1 | 168 | 285 | 116 | 236 | 7.73e-28 | 110 |
| MS.gene46301.t1 | AT1G12030 | 44.538 | 119 | 65 | 1 | 168 | 285 | 118 | 236 | 2.17e-27 | 109 |
| MS.gene46301.t1 | AT1G77145 | 38.462 | 143 | 67 | 3 | 157 | 278 | 69 | 211 | 1.08e-25 | 104 |
| MS.gene46301.t1 | AT1G77160 | 39.161 | 143 | 66 | 4 | 157 | 278 | 19 | 161 | 3.94e-25 | 101 |
| MS.gene46301.t1 | AT1G77160 | 33.898 | 177 | 95 | 5 | 123 | 278 | 41 | 216 | 6.88e-25 | 102 |
| MS.gene46301.t1 | AT2G20670 | 32.418 | 182 | 106 | 3 | 119 | 283 | 66 | 247 | 1.51e-24 | 102 |
| MS.gene46301.t1 | AT1G77145 | 43.299 | 97 | 45 | 1 | 192 | 278 | 58 | 154 | 5.84e-21 | 90.1 |
Find 65 sgRNAs with CRISPR-Local
Find 94 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAACAGAGTTTGAAGAAAA+AGG | 0.228804 | 7.3:-15322582 | MS.gene46301:CDS |
| GAATACATTGATGTGGTAAT+AGG | 0.271907 | 7.3:-15322761 | MS.gene46301:CDS |
| CTCTGTTCAGACTGGGGTTA+AGG | 0.326705 | 7.3:-15322330 | MS.gene46301:CDS |
| TATTACCTTAAGAATTTCAT+AGG | 0.344890 | 7.3:+15323197 | None:intergenic |
| GCCGATCGATTCTCAGATTC+CGG | 0.346655 | 7.3:-15323532 | MS.gene46301:CDS |
| GAGAATTACTTTGTAAGCTT+TGG | 0.347015 | 7.3:+15322679 | None:intergenic |
| TTCGCAAGACACACTGAGTT+TGG | 0.349350 | 7.3:+15323354 | None:intergenic |
| TCGAATACGTTAGATCAAAA+TGG | 0.354614 | 7.3:-15322532 | MS.gene46301:CDS |
| TTGATCGGCGGCGGTGAGTC+TGG | 0.364358 | 7.3:-15322422 | MS.gene46301:CDS |
| ATTGATGGATTGTTGAATCT+TGG | 0.376735 | 7.3:-15322953 | MS.gene46301:CDS |
| AAGTTTCTTTCATTAACATT+TGG | 0.413551 | 7.3:+15323055 | None:intergenic |
| CGAATACATAAGGAAGCGTT+TGG | 0.430093 | 7.3:+15322657 | None:intergenic |
| GCGCTTGGTGGTGGTACATC+TGG | 0.432758 | 7.3:-15323225 | MS.gene46301:CDS |
| GGTTAAGGTTGTGACTGGTT+TGG | 0.439989 | 7.3:-15322315 | MS.gene46301:CDS |
| CTCAGTGTGTCTTGCGAAGA+TGG | 0.440701 | 7.3:-15323349 | MS.gene46301:CDS |
| TGAAGCCTATGAAATTCTTA+AGG | 0.450279 | 7.3:-15323202 | MS.gene46301:intron |
| CTTCAATTTGTAAATCTCGC+TGG | 0.450704 | 7.3:-15322922 | MS.gene46301:CDS |
| ATTACCTGCTATACAGAAAG+TGG | 0.473400 | 7.3:+15322892 | None:intergenic |
| TTCAATTTGTAAATCTCGCT+GGG | 0.477588 | 7.3:-15322921 | MS.gene46301:CDS |
| AGTCAAAAGTGGTGGTTGAA+TGG | 0.479321 | 7.3:-15322379 | MS.gene46301:CDS |
| CGCTTCCTTATGTATTCGTA+GGG | 0.482238 | 7.3:-15322652 | MS.gene46301:CDS |
| GACAGTGAACTTCACGCGCT+TGG | 0.484979 | 7.3:-15323240 | MS.gene46301:CDS |
| GCGTAGATGCGGCTCATCTC+CGG | 0.486206 | 7.3:+15323413 | None:intergenic |
| AAATCCACTTTCTGTATAGC+AGG | 0.488720 | 7.3:-15322896 | MS.gene46301:intron |
| ACTGGGGTTAAGGTTGTGAC+TGG | 0.490506 | 7.3:-15322320 | MS.gene46301:CDS |
| CTCTTCCCTACGAATACATA+AGG | 0.499623 | 7.3:+15322647 | None:intergenic |
| GAACTTCACGCGCTTGGTGG+TGG | 0.503545 | 7.3:-15323234 | MS.gene46301:CDS |
| GGTGGTGTAATTCTTGTGTA+AGG | 0.506637 | 7.3:+15322503 | None:intergenic |
| TTCAACGGAAACTTCGACGA+TGG | 0.520096 | 7.3:-15323267 | MS.gene46301:CDS |
| ACGCTTCCTTATGTATTCGT+AGG | 0.529019 | 7.3:-15322653 | MS.gene46301:CDS |
| TTCAGCCGCGACTTGACGAC+CGG | 0.537184 | 7.3:+15323495 | None:intergenic |
| TTTCGCTGCCTCAGATGCTA+TGG | 0.541059 | 7.3:+15322601 | None:intergenic |
| AGGGTTTGCATGTTCCACCT+TGG | 0.550630 | 7.3:-15322562 | MS.gene46301:CDS |
| GGCTGAATCTTCATTGTGAA+AGG | 0.554368 | 7.3:+15323552 | None:intergenic |
| AGTGAACTTCACGCGCTTGG+TGG | 0.563216 | 7.3:-15323237 | MS.gene46301:CDS |
| CATTGATGTGGTAATAGGAA+AGG | 0.564023 | 7.3:-15322756 | MS.gene46301:CDS |
| TATTCGTAGGGAAGAGTGAT+CGG | 0.580857 | 7.3:-15322640 | MS.gene46301:CDS |
| ACCGGCTTAATCCTCTCTGC+CGG | 0.582629 | 7.3:+15323513 | None:intergenic |
| TAATGAAAGAAACTTGTTAG+CGG | 0.583047 | 7.3:-15323047 | MS.gene46301:CDS |
| CCACCACCGGAAAAGATCGC+CGG | 0.591984 | 7.3:-15323432 | MS.gene46301:CDS |
| GAACCGTCCTTGCGTAGATG+CGG | 0.593446 | 7.3:+15323402 | None:intergenic |
| GCCGGAATCTGAGAATCGAT+CGG | 0.595449 | 7.3:+15323531 | None:intergenic |
| TATTGTAGCCATAGCATCTG+AGG | 0.596656 | 7.3:-15322609 | MS.gene46301:CDS |
| AGATGAGCCGCATCTACGCA+AGG | 0.602105 | 7.3:-15323409 | MS.gene46301:CDS |
| TGTGCTCGTAACTGCTTCAA+CGG | 0.602134 | 7.3:-15323282 | MS.gene46301:CDS |
| ATGTGGTAATAGGAAAGGAG+AGG | 0.603084 | 7.3:-15322751 | MS.gene46301:CDS |
| AGGAAACAGAGAGAAAACAG+AGG | 0.611141 | 7.3:-15322448 | MS.gene46301:CDS |
| TCCGGCAGAGAGGATTAAGC+CGG | 0.628109 | 7.3:-15323514 | MS.gene46301:CDS |
| CGTGACCAAGGACAAAACAT+AGG | 0.628493 | 7.3:+15322482 | None:intergenic |
| TGTGGTAATAGGAAAGGAGA+GGG | 0.630701 | 7.3:-15322750 | MS.gene46301:CDS |
| GAGCCGCATCTACGCAAGGA+CGG | 0.639874 | 7.3:-15323405 | MS.gene46301:CDS |
| TTAAGCCGGTCGTCAAGTCG+CGG | 0.642301 | 7.3:-15323500 | MS.gene46301:CDS |
| GGTGAGTCTGGACAGAGTGG+TGG | 0.647788 | 7.3:-15322410 | MS.gene46301:CDS |
| TCACTGATTTCACGTGACCA+AGG | 0.649691 | 7.3:+15322470 | None:intergenic |
| CGTTCTGAAGAATCCACCAC+CGG | 0.660886 | 7.3:-15323445 | MS.gene46301:CDS |
| TGGTGGATTCTTCAGAACGC+CGG | 0.661044 | 7.3:+15323449 | None:intergenic |
| GGCGGTGAGTCTGGACAGAG+TGG | 0.665048 | 7.3:-15322413 | MS.gene46301:CDS |
| GGAAACAGAGAGAAAACAGA+GGG | 0.667200 | 7.3:-15322447 | MS.gene46301:CDS |
| TGAATATGAATACATTGATG+TGG | 0.676544 | 7.3:-15322768 | MS.gene46301:CDS |
| ATTCTCAGATTCCGGCAGAG+AGG | 0.685646 | 7.3:-15323524 | MS.gene46301:CDS |
| GACCAAGGACAAAACATAGG+TGG | 0.690820 | 7.3:+15322485 | None:intergenic |
| AAGCGCGTGAAGTTCACTGT+CGG | 0.695670 | 7.3:+15323242 | None:intergenic |
| TGGTGAGTCAGAGTCAAAAG+TGG | 0.696161 | 7.3:-15322390 | MS.gene46301:CDS |
| TGAGTCAGAGTCAAAAGTGG+TGG | 0.721751 | 7.3:-15322387 | MS.gene46301:CDS |
| TTGGTCACGTGAAATCAGTG+AGG | 0.759557 | 7.3:-15322468 | MS.gene46301:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAACAGTAACAATTAA+CGG | + | chr7.3:15322751-15322770 | None:intergenic | 15.0% |
| !! | TTAATTAATCTCTAACTTAT+CGG | + | chr7.3:15322706-15322725 | None:intergenic | 15.0% |
| !! | AAGTTTCTTTCATTAACATT+TGG | + | chr7.3:15322792-15322811 | None:intergenic | 20.0% |
| !! | TATTACCTTAAGAATTTCAT+AGG | + | chr7.3:15322650-15322669 | None:intergenic | 20.0% |
| !!! | AATTGTTACTGTTTTTAACA+GGG | - | chr7.3:15322753-15322772 | MS.gene46301:CDS | 20.0% |
| !!! | TAATTGTTACTGTTTTTAAC+AGG | - | chr7.3:15322752-15322771 | MS.gene46301:CDS | 20.0% |
| ! | AAACAGAGTTTGAAGAAAAA+GGG | - | chr7.3:15323263-15323282 | MS.gene46301:CDS | 25.0% |
| ! | TGAATATGAATACATTGATG+TGG | - | chr7.3:15323076-15323095 | MS.gene46301:intron | 25.0% |
| !! | TGCAGAAAAATTGTTATTGA+TGG | - | chr7.3:15322876-15322895 | MS.gene46301:intron | 25.0% |
| !!! | TAATGAAAGAAACTTGTTAG+CGG | - | chr7.3:15322797-15322816 | MS.gene46301:intron | 25.0% |
| !!! | TGTCTGATACAATTTTTTCA+TGG | + | chr7.3:15322986-15323005 | None:intergenic | 25.0% |
| GAAACAGAGTTTGAAGAAAA+AGG | - | chr7.3:15323262-15323281 | MS.gene46301:CDS | 30.0% | |
| GAATACATTGATGTGGTAAT+AGG | - | chr7.3:15323083-15323102 | MS.gene46301:intron | 30.0% | |
| GAGAATTACTTTGTAAGCTT+TGG | + | chr7.3:15323168-15323187 | None:intergenic | 30.0% | |
| TCGAATACGTTAGATCAAAA+TGG | - | chr7.3:15323312-15323331 | MS.gene46301:CDS | 30.0% | |
| TGAAGCCTATGAAATTCTTA+AGG | - | chr7.3:15322642-15322661 | MS.gene46301:CDS | 30.0% | |
| TTCAATTTGTAAATCTCGCT+GGG | - | chr7.3:15322923-15322942 | MS.gene46301:CDS | 30.0% | |
| ! | TATCAGACACTTTTGATCAA+AGG | - | chr7.3:15322997-15323016 | MS.gene46301:CDS | 30.0% |
| !! | ATTGATGGATTGTTGAATCT+TGG | - | chr7.3:15322891-15322910 | MS.gene46301:intron | 30.0% |
| !!! | TTACTGTTTTTAACAGGGTT+TGG | - | chr7.3:15322758-15322777 | MS.gene46301:CDS | 30.0% |
| AAATCCACTTTCTGTATAGC+AGG | - | chr7.3:15322948-15322967 | MS.gene46301:CDS | 35.0% | |
| ATTACCTGCTATACAGAAAG+TGG | + | chr7.3:15322955-15322974 | None:intergenic | 35.0% | |
| CATTGATGTGGTAATAGGAA+AGG | - | chr7.3:15323088-15323107 | MS.gene46301:intron | 35.0% | |
| CTTCAATTTGTAAATCTCGC+TGG | - | chr7.3:15322922-15322941 | MS.gene46301:CDS | 35.0% | |
| !! | AGAAAACAGAGGGTTTTGAT+CGG | - | chr7.3:15323407-15323426 | MS.gene46301:CDS | 35.0% |
| !!! | GAGTTTTTGGGTTTCAATTC+TGG | + | chr7.3:15323497-15323516 | None:intergenic | 35.0% |
| !!! | TTTTTGGGTTTCAATTCTGG+TGG | + | chr7.3:15323494-15323513 | None:intergenic | 35.0% |
| ACGCTTCCTTATGTATTCGT+AGG | - | chr7.3:15323191-15323210 | MS.gene46301:intron | 40.0% | |
| AGGAAACAGAGAGAAAACAG+AGG | - | chr7.3:15323396-15323415 | MS.gene46301:CDS | 40.0% | |
| AGTCAAAAGTGGTGGTTGAA+TGG | - | chr7.3:15323465-15323484 | MS.gene46301:CDS | 40.0% | |
| ATGTGGTAATAGGAAAGGAG+AGG | - | chr7.3:15323093-15323112 | MS.gene46301:intron | 40.0% | |
| CAAAAACTCTGTTCAGACTG+GGG | - | chr7.3:15323508-15323527 | MS.gene46301:CDS | 40.0% | |
| CCAAAAACTCTGTTCAGACT+GGG | - | chr7.3:15323507-15323526 | MS.gene46301:CDS | 40.0% | |
| CGCTTCCTTATGTATTCGTA+GGG | - | chr7.3:15323192-15323211 | MS.gene46301:intron | 40.0% | |
| CTCTTCCCTACGAATACATA+AGG | + | chr7.3:15323200-15323219 | None:intergenic | 40.0% | |
| GGAAACAGAGAGAAAACAGA+GGG | - | chr7.3:15323397-15323416 | MS.gene46301:CDS | 40.0% | |
| GGCTGAATCTTCATTGTGAA+AGG | + | chr7.3:15322295-15322314 | None:intergenic | 40.0% | |
| GGTGGTGTAATTCTTGTGTA+AGG | + | chr7.3:15323344-15323363 | None:intergenic | 40.0% | |
| TATTCGTAGGGAAGAGTGAT+CGG | - | chr7.3:15323204-15323223 | MS.gene46301:CDS | 40.0% | |
| TATTGTAGCCATAGCATCTG+AGG | - | chr7.3:15323235-15323254 | MS.gene46301:CDS | 40.0% | |
| TGTGGTAATAGGAAAGGAGA+GGG | - | chr7.3:15323094-15323113 | MS.gene46301:intron | 40.0% | |
| ! | CCAGTCTGAACAGAGTTTTT+GGG | + | chr7.3:15323509-15323528 | None:intergenic | 40.0% |
| !! | ACACTTTTGATCAAAGGCGT+CGG | - | chr7.3:15323003-15323022 | MS.gene46301:CDS | 40.0% |
| !! | ACGTATTCGAGTTTTCTCCA+AGG | + | chr7.3:15323302-15323321 | None:intergenic | 40.0% |
| !! | CGAATACATAAGGAAGCGTT+TGG | + | chr7.3:15323190-15323209 | None:intergenic | 40.0% |
| !! | TATTCGAGTTTTCTCCAAGG+TGG | + | chr7.3:15323299-15323318 | None:intergenic | 40.0% |
| !!! | CTGTTTTTAACAGGGTTTGG+TGG | - | chr7.3:15322761-15322780 | MS.gene46301:CDS | 40.0% |
| CCCAAAAACTCTGTTCAGAC+TGG | - | chr7.3:15323506-15323525 | MS.gene46301:CDS | 45.0% | |
| CGTGACCAAGGACAAAACAT+AGG | + | chr7.3:15323365-15323384 | None:intergenic | 45.0% | |
| GACCAAGGACAAAACATAGG+TGG | + | chr7.3:15323362-15323381 | None:intergenic | 45.0% | |
| TGAGTCAGAGTCAAAAGTGG+TGG | - | chr7.3:15323457-15323476 | MS.gene46301:CDS | 45.0% | |
| TGGTGAGTCAGAGTCAAAAG+TGG | - | chr7.3:15323454-15323473 | MS.gene46301:CDS | 45.0% | |
| TGTGCTCGTAACTGCTTCAA+CGG | - | chr7.3:15322562-15322581 | MS.gene46301:CDS | 45.0% | |
| TTCAACGGAAACTTCGACGA+TGG | - | chr7.3:15322577-15322596 | MS.gene46301:CDS | 45.0% | |
| TTCGCAAGACACACTGAGTT+TGG | + | chr7.3:15322493-15322512 | None:intergenic | 45.0% | |
| TTGGTCACGTGAAATCAGTG+AGG | - | chr7.3:15323376-15323395 | MS.gene46301:CDS | 45.0% | |
| ! | CACCACCTATGTTTTGTCCT+TGG | - | chr7.3:15323357-15323376 | MS.gene46301:CDS | 45.0% |
| ! | CCCAGTCTGAACAGAGTTTT+TGG | + | chr7.3:15323510-15323529 | None:intergenic | 45.0% |
| ! | GGTTAAGGTTGTGACTGGTT+TGG | - | chr7.3:15323529-15323548 | MS.gene46301:CDS | 45.0% |
| !! | AAACAGAGGGTTTTGATCGG+CGG | - | chr7.3:15323410-15323429 | MS.gene46301:CDS | 45.0% |
| !! | CTTTTCGAGCGACAATTCTC+CGG | - | chr7.3:15322376-15322395 | MS.gene46301:CDS | 45.0% |
| !! | TCACTGATTTCACGTGACCA+AGG | + | chr7.3:15323377-15323396 | None:intergenic | 45.0% |
| !!! | ATTTATTTGTATAATTTTTT+AGG | - | chr7.3:15323053-15323072 | MS.gene46301:CDS | 5.0% |
| AAGCGCGTGAAGTTCACTGT+CGG | + | chr7.3:15322605-15322624 | None:intergenic | 50.0% | |
| ACTGGGGTTAAGGTTGTGAC+TGG | - | chr7.3:15323524-15323543 | MS.gene46301:CDS | 50.0% | |
| AGGGTTTGCATGTTCCACCT+TGG | - | chr7.3:15323282-15323301 | MS.gene46301:CDS | 50.0% | |
| ATTCTCAGATTCCGGCAGAG+AGG | - | chr7.3:15322320-15322339 | MS.gene46301:CDS | 50.0% | |
| CTCAGTGTGTCTTGCGAAGA+TGG | - | chr7.3:15322495-15322514 | MS.gene46301:CDS | 50.0% | |
| CTCTGTTCAGACTGGGGTTA+AGG | - | chr7.3:15323514-15323533 | MS.gene46301:CDS | 50.0% | |
| GCCGGAATCTGAGAATCGAT+CGG | + | chr7.3:15322316-15322335 | None:intergenic | 50.0% | |
| TTTCGCTGCCTCAGATGCTA+TGG | + | chr7.3:15323246-15323265 | None:intergenic | 50.0% | |
| ! | GCCGATCGATTCTCAGATTC+CGG | - | chr7.3:15322312-15322331 | MS.gene46301:CDS | 50.0% |
| ! | TCATCTCCGGCGATCTTTTC+CGG | + | chr7.3:15322421-15322440 | None:intergenic | 50.0% |
| !! | CGTTCTGAAGAATCCACCAC+CGG | - | chr7.3:15322399-15322418 | MS.gene46301:CDS | 50.0% |
| !! | TGGTGGATTCTTCAGAACGC+CGG | + | chr7.3:15322398-15322417 | None:intergenic | 50.0% |
| AGATGAGCCGCATCTACGCA+AGG | - | chr7.3:15322435-15322454 | MS.gene46301:CDS | 55.0% | |
| AGTGAACTTCACGCGCTTGG+TGG | - | chr7.3:15322607-15322626 | MS.gene46301:CDS | 55.0% | |
| GAACCGTCCTTGCGTAGATG+CGG | + | chr7.3:15322445-15322464 | None:intergenic | 55.0% | |
| GACAGTGAACTTCACGCGCT+TGG | - | chr7.3:15322604-15322623 | MS.gene46301:CDS | 55.0% | |
| TCCGGCAGAGAGGATTAAGC+CGG | - | chr7.3:15322330-15322349 | MS.gene46301:CDS | 55.0% | |
| TTAAGCCGGTCGTCAAGTCG+CGG | - | chr7.3:15322344-15322363 | MS.gene46301:CDS | 55.0% | |
| ! | ACCGGCTTAATCCTCTCTGC+CGG | + | chr7.3:15322334-15322353 | None:intergenic | 55.0% |
| CCACCACCGGAAAAGATCGC+CGG | - | chr7.3:15322412-15322431 | MS.gene46301:CDS | 60.0% | |
| GAGCCGCATCTACGCAAGGA+CGG | - | chr7.3:15322439-15322458 | MS.gene46301:CDS | 60.0% | |
| GCGTAGATGCGGCTCATCTC+CGG | + | chr7.3:15322434-15322453 | None:intergenic | 60.0% | |
| GGTGAGTCTGGACAGAGTGG+TGG | - | chr7.3:15323434-15323453 | MS.gene46301:CDS | 60.0% | |
| TTCAGCCGCGACTTGACGAC+CGG | + | chr7.3:15322352-15322371 | None:intergenic | 60.0% | |
| ! | GAACTTCACGCGCTTGGTGG+TGG | - | chr7.3:15322610-15322629 | MS.gene46301:CDS | 60.0% |
| ! | TCTCCGGCGATCTTTTCCGG+TGG | + | chr7.3:15322418-15322437 | None:intergenic | 60.0% |
| !! | CAGAGGGTTTTGATCGGCGG+CGG | - | chr7.3:15323413-15323432 | MS.gene46301:CDS | 60.0% |
| !! | GCGCTTGGTGGTGGTACATC+TGG | - | chr7.3:15322619-15322638 | MS.gene46301:CDS | 60.0% |
| GGCGGTGAGTCTGGACAGAG+TGG | - | chr7.3:15323431-15323450 | MS.gene46301:CDS | 65.0% | |
| TTGATCGGCGGCGGTGAGTC+TGG | - | chr7.3:15323422-15323441 | MS.gene46301:CDS | 65.0% | |
| ! | CCGGCGATCTTTTCCGGTGG+TGG | + | chr7.3:15322415-15322434 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 15322289 | 15323577 | 15322289 | ID=MS.gene46301 |
| chr7.3 | mRNA | 15322289 | 15323577 | 15322289 | ID=MS.gene46301.t1;Parent=MS.gene46301 |
| chr7.3 | exon | 15323203 | 15323577 | 15323203 | ID=MS.gene46301.t1.exon1;Parent=MS.gene46301.t1 |
| chr7.3 | CDS | 15323203 | 15323577 | 15323203 | ID=cds.MS.gene46301.t1;Parent=MS.gene46301.t1 |
| chr7.3 | exon | 15322897 | 15323092 | 15322897 | ID=MS.gene46301.t1.exon2;Parent=MS.gene46301.t1 |
| chr7.3 | CDS | 15322897 | 15323092 | 15322897 | ID=cds.MS.gene46301.t1;Parent=MS.gene46301.t1 |
| chr7.3 | exon | 15322289 | 15322791 | 15322289 | ID=MS.gene46301.t1.exon3;Parent=MS.gene46301.t1 |
| chr7.3 | CDS | 15322289 | 15322791 | 15322289 | ID=cds.MS.gene46301.t1;Parent=MS.gene46301.t1 |
| Gene Sequence |
| Protein sequence |
