AlfalfaGEDB | MS.gene46407

M. sativa cultivar XinJiangDaYe / MS.gene46407

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF01535.23 PF12854.10 PF12921.10 PF13041.9 PF14559.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46407.t1	XP_013467813.1	85.9	1047	147	1	1	1047	1	1046	1.10E-284	989.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46407.t1	Q9FNG8	46.5	821	414	7	55	870	54	854	1.0e-63	246.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46407.t1	A0A072VUV4	85.9	1047	147	1	1	1047	1	1046	8.2e-285	989.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049824	MS.gene46407	0.812802	3.53E-51	-1.69E-46
MS.gene049825	MS.gene46407	0.807361	5.25E-50	-1.69E-46
MS.gene051744	MS.gene46407	0.806597	7.62E-50	-1.69E-46
MS.gene052582	MS.gene46407	0.806593	7.63E-50	-1.69E-46
MS.gene052584	MS.gene46407	0.824705	6.99E-54	-1.69E-46
MS.gene055808	MS.gene46407	0.80535	1.39E-49	-1.69E-46
MS.gene056091	MS.gene46407	0.806795	6.92E-50	-1.69E-46
MS.gene05954	MS.gene46407	0.823527	1.32E-53	-1.69E-46
MS.gene059625	MS.gene46407	0.8002	1.61E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene018021	MS.gene46407	PPI
MS.gene026903	MS.gene46407	PPI
MS.gene031357	MS.gene46407	PPI
MS.gene032328	MS.gene46407	PPI
MS.gene034729	MS.gene46407	PPI
MS.gene05461	MS.gene46407	PPI
MS.gene055966	MS.gene46407	PPI
MS.gene071299	MS.gene46407	PPI
MS.gene32245	MS.gene46407	PPI
MS.gene38991	MS.gene46407	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46407.t1	MTR_1g055295	94.460	1047	57	1	1	1047	1	1046	0.0	2045
MS.gene46407.t1	MTR_3g105900	23.259	804	558	16	186	979	361	1115	8.83e-56	211
MS.gene46407.t1	MTR_3g105900	24.740	384	286	3	184	566	219	600	3.80e-35	145
MS.gene46407.t1	MTR_3g105900	20.022	904	586	15	181	1035	111	926	4.00e-33	139
MS.gene46407.t1	MTR_3g105900	26.462	359	249	6	661	1013	99	448	8.22e-26	115
MS.gene46407.t1	MTR_3g105900	23.846	390	287	6	138	520	729	1115	9.42e-25	112
MS.gene46407.t1	MTR_3g105900	25.424	295	217	2	742	1035	809	1101	1.68e-24	111
MS.gene46407.t1	MTR_3g105900	27.344	256	180	4	770	1022	766	1018	5.45e-21	100
MS.gene46407.t1	MTR_2g036080	22.186	924	617	19	157	1035	99	965	9.15e-46	180
MS.gene46407.t1	MTR_2g036080	22.632	380	272	5	183	542	38	415	2.98e-21	101

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene46407.t1	AT5G06400	50.474	1054	484	10	1	1043	1	1027	0.0	1043
MS.gene46407.t1	AT4G31850	24.088	905	550	18	195	978	217	1105	2.31e-59	222
MS.gene46407.t1	AT4G31850	27.978	361	255	3	689	1047	218	575	3.41e-36	149
MS.gene46407.t1	AT4G31850	22.902	572	397	8	433	1002	175	704	3.08e-31	133
MS.gene46407.t1	AT4G31850	25.000	336	245	3	708	1040	342	673	9.75e-27	119
MS.gene46407.t1	AT4G31850	23.885	381	280	5	146	519	728	1105	1.14e-24	112
MS.gene46407.t1	AT4G31850	28.500	200	142	1	837	1035	822	1021	1.58e-23	108
MS.gene46407.t1	AT4G31850	27.195	353	251	6	199	548	116	465	6.50e-23	106
MS.gene46407.t1	AT4G31850	19.881	674	483	14	268	932	79	704	3.72e-19	94.4
MS.gene46407.t1	AT4G31850	28.082	146	105	0	872	1017	190	335	3.10e-13	74.7

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Find 208 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCCTCAAACCCAAATG+CGG	0.668788	1.2:-43708155	None:intergenic
AAAAGCTATTCAGATATATG+CGG	0.655393	1.2:+43710380	MS.gene46407:CDS
AAAATCGTATATCCGAAGCC+TGG	0.545856	1.2:+43709095	MS.gene46407:CDS
AAACGTGATGAGAATGTGAA+AGG	0.641153	1.2:-43707662	None:intergenic
AAATTCCGCATTTGGGTTTG+AGG	0.451267	1.2:+43708150	MS.gene46407:CDS
AACATTGCAATCAAAATTGC+AGG	0.368044	1.2:+43709706	MS.gene46407:CDS
AACTGGGTCTCTTCCAAAAC+CGG	0.395826	1.2:-43707966	None:intergenic
AACTGGTTGAAGCTTAAGGA+TGG	0.569370	1.2:+43708179	MS.gene46407:CDS
AACTTACATGGAAACCAAGG+GGG	0.726033	1.2:+43709288	MS.gene46407:CDS
AAGAGAAGGGACATTGTTGT+GGG	0.478916	1.2:+43708824	MS.gene46407:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATTGCAATCAAAATTGC+AGG	+	chr1.2:43709706-43709725	MS.gene46407:CDS	30.0%
ACATTGCAATCAAAATTGCA+GGG	+	chr1.2:43709707-43709726	MS.gene46407:CDS	30.0%
ACGATCATGATCATGATTTA+CGG	+	chr1.2:43709811-43709830	MS.gene46407:CDS	30.0%
ACTAAGGTCTCAAAATATTC+AGG	-	chr1.2:43708746-43708765	None:intergenic	30.0%
AGGAATTAAACCAGATATTG+TGG	+	chr1.2:43709039-43709058	MS.gene46407:CDS	30.0%
ATAACTTACATGGAAACCAA+GGG	+	chr1.2:43709286-43709305	MS.gene46407:CDS	30.0%
ATCCAATAACATCAGAAACA+TGG	+	chr1.2:43709788-43709807	MS.gene46407:CDS	30.0%
ATGGTCCTTTGAATTTCATA+CGG	-	chr1.2:43710509-43710528	None:intergenic	30.0%
ATTTATTAAGGAGCTTTGCA+AGG	+	chr1.2:43709177-43709196	MS.gene46407:CDS	30.0%
CAATACTTTGACAATGTCAT+CGG	-	chr1.2:43709212-43709231	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	43707615	43710758	43707615	ID=MS.gene46407
chr1.2	mRNA	43707615	43710758	43707615	ID=MS.gene46407.t1;Parent=MS.gene46407
chr1.2	exon	43707615	43710758	43707615	ID=MS.gene46407.t1.exon1;Parent=MS.gene46407.t1
chr1.2	CDS	43707615	43710758	43707615	ID=cds.MS.gene46407.t1;Parent=MS.gene46407.t1

Gene Sequence

>MS.gene46407

ATGAGAGCATTATTAAAAATCAAACTCCGATTCTATGATTCATCTTTCCTTTCACATTCTCATCACGTTTTTCATCTTTCTACATTCTCAAATTCATCAAAACTTTCACATTCTCACAAAACAACACAACAACTTTCAAACTCAGACATTGAACCCTCACGTGCACTTTTCAACGAGATTACTGAGATTTTAGGTTCTGATACTGTAATCCATGATAATTCCCCCTCTGGGTTATTGTTTCCACTCGAAATTCGTGATACCCAATTGGGTTTTAAGGAGATACATGATTGCACTGAACCTGTTTGTGAAAATGCCGCAGAGAGTGTGGTACTTGATAAAGATGAAAACTTTCCGGTTTTGGAAGAGACCCAGTTGGTTAAAATGGAAGAAGAAGATATGTGTCGAATGGTGGGTGAGATTATGGAAATAATTCGAGGTGAAAATGGTTCGGTTTCTGTGGAAGAGCGATTAGAAAAGATGGGTTATTGTGAATTGAATGTTGAGGTTTTCGATAGAGTTTTGAAAAGGTGTTTTAAAATTCCGCATTTGGGTTTGAGGGTTTTTAACTGGTTGAAGCTTAAGGATGGTTTTCGTCATACAACACAGACTTATAATACCATGTTGTGTCTTGCCGGAGAAGGTAAGGACTTTGGGTTGGTGAAGAAGTTGGTGGAGGAAATGGATGAATGTAGAGTTCAAAAGGATGTAAATACGTGGACCATTCTTGTGTCTCTTTATGGGAAGGCTAAGAAAATCAGTGAAGCTTTGTTGGCTTTTGAAAATATGCAAAAGTGTGGCTGTGAACCTGATGTGGTTTCGTATAGAACGGCCATTCGTTTGCTTTGTAGTTCGGGTAGGGGTGATATTGCTATGGAGTTCTATAAGGACATGGTCAAGAAGGACATTGTACTTGATGATGTAAGGTTGTATAAGATGCTTATGAACTGTATGGCAGAATCAGGAGATGTTGCAGCTGTTAGTTTGCTTGGAAATGACATGACTCGGTTGTGTCTGATGCCGGAAAACAGTGTTTTTGGGTGTATGCTTAAGAGCTTTTGTATTTCTGGTAGGATTAAAGAAGCTTTGGAATTGATTCGTGACCTCAAATATAAAGATGTAGTTCTTGAACCTGAATATTTTGAGACCTTAGTGAGAGGGCTGTGTAAGGCAGGAAGGATTTCAGACGCTTTAGAGATTGTTGAAATTATGAAGAGAAGGGACATTGTTGTGGGGAACGTTCAAGGGATTATCATAAATGGCTATTTACGGAGAAACGATGTTTGCTTGGCACTTGATGTGTTTCAAAGCATGAAAGAATCTGGTTATGTGCCTACAGTTTCCTCATATACTGAACTGATACAGCATCTGTTTAAGTTGAGTAGGTATGAAGAAGCTTGCATGCTGTATGATGAGATGCTCGGAAAAGGAATTAAACCAGATATTGTGGCCATAACAGCCATGGCTGCAGGCCATGTTTCACAAAATCGTATATCCGAAGCCTGGAAAATTTTCAAGAGTATGGAAAGCCAAGGCATCAAGCCTACATGGAAGTCGTATTCGGTATTTATTAAGGAGCTTTGCAAGGCTTCAAAGACCGATGACATTGTCAAAGTATTGTATGAAATGCAGTCTTCAAAGATTGTAATCAAAGATGAAGTATTCCGTTGGGTTATAACTTACATGGAAACCAAGGGGGAGTTTGCTTTAAAAGAGAGAGTGCAAAAGATGCATACAACATCTAAACTCTATCCTGAAAATTTTGAGGAGTCTGAAAAACGAGTGTCATTGAGAAATGAGGTGGAAGAAGATAGAGGAGTTGACCAACCAAAATCAGAAAAGGTAGACTGCTCATTACTAATTCCAATTCTCAAGACTTACAGTGAGCAAGATGTTCGCGATGTATGTAGGATTCTTTCATCCTCTCTAGATTGGTCTTCAATCCAAGAAAAGTTAGAGATAAGTAACATTGAGTTCACCCCAGAATTTGTTATGGAGATAATGCAAAGCTGCAGTATGCATGGCTGCTCGGTGCTAAATTTCTTTTTGTGGGTGGGAAAGAGACCTGGCTACAGACACACCACAGAATCATACAACATTGCAATCAAAATTGCAGGGCGTGGGAAAGATTTCAAGCACATGCGCAGCCTGTTATATGAAATGAGAAGAAACAATTATCCAATAACATCAGAAACATGGACGATCATGATCATGATTTACGGCCGAACAGGTTTGACAGAGATGGCCATGAATTGTTTCAAAGAGATGAAAGATGGTGGTTATTGCCCAAGTAGGAGTACATACAAGTATCTGATCATCGCCTTATGTGGGAGGAAAGGAAGGAAAATTGATGATGCTCTCAAAATATACGGTGAGATGATTAATTCCGGACATGTCCCAGACAAAGAATTGATTGAAACCTACCTTGGTTGCTTATGTGAAATGGGTAGGATCGTAGAGGCTAGGAAATGCATAGATTCACTTCAAAGATTCGGCTACACGGTCCCTCTTAGCTACTCGTTGTTTATAAGAGCTCTTTGTAGAGCTAGAAAAGTGGAAGAAGCATTGAAATTAGTTGAAGAAGCTGGTGCAGAGAAAACTAATGTTGAAAAGCTAACTTATGGAAGTATTGTACATGGTTTATTGCAAAAGGGTAAACTAGAAGAAGCATTAACCAAGGTGAATACAATGAAACAAGAGGGAATAACACCTACAATACATGTTTACACATCTTTAATAGTTCATTTCTTTAAAGAGAAACAAGTAGAAAAAGCTATTCAGATATATGCGGAAATGCTAGAATCAGGTTATGAACCAAATGTTGTTACATATTCTGCACTTATACGCGGGTACATGAACGTGGGGAGGTATAATGATGCATGGAATGTGTTCTACCGTATGAAATTCAAAGGACCATTTCCTGATTTTAAAACATATTCTATGTTCCTTTCTTGTCTATGCAAAGTTGGGAAATCTGAAGAAGCAATGAGACTTATTTCTGAAATGTTGGAGAGTGGGATTGTTCCTAGTACTATTAACTTTAGAACAGTTTTTTATGGGTTGAATAGAGAAGGGAAACAAGGTTTAGCACGTGTTGTGTTGCAACAAAAATCAGAACTTATAAGAAAGCGCAAGCTCATAACTTGA

Protein sequence

>MS.gene46407.t1

MRALLKIKLRFYDSSFLSHSHHVFHLSTFSNSSKLSHSHKTTQQLSNSDIEPSRALFNEITEILGSDTVIHDNSPSGLLFPLEIRDTQLGFKEIHDCTEPVCENAAESVVLDKDENFPVLEETQLVKMEEEDMCRMVGEIMEIIRGENGSVSVEERLEKMGYCELNVEVFDRVLKRCFKIPHLGLRVFNWLKLKDGFRHTTQTYNTMLCLAGEGKDFGLVKKLVEEMDECRVQKDVNTWTILVSLYGKAKKISEALLAFENMQKCGCEPDVVSYRTAIRLLCSSGRGDIAMEFYKDMVKKDIVLDDVRLYKMLMNCMAESGDVAAVSLLGNDMTRLCLMPENSVFGCMLKSFCISGRIKEALELIRDLKYKDVVLEPEYFETLVRGLCKAGRISDALEIVEIMKRRDIVVGNVQGIIINGYLRRNDVCLALDVFQSMKESGYVPTVSSYTELIQHLFKLSRYEEACMLYDEMLGKGIKPDIVAITAMAAGHVSQNRISEAWKIFKSMESQGIKPTWKSYSVFIKELCKASKTDDIVKVLYEMQSSKIVIKDEVFRWVITYMETKGEFALKERVQKMHTTSKLYPENFEESEKRVSLRNEVEEDRGVDQPKSEKVDCSLLIPILKTYSEQDVRDVCRILSSSLDWSSIQEKLEISNIEFTPEFVMEIMQSCSMHGCSVLNFFLWVGKRPGYRHTTESYNIAIKIAGRGKDFKHMRSLLYEMRRNNYPITSETWTIMIMIYGRTGLTEMAMNCFKEMKDGGYCPSRSTYKYLIIALCGRKGRKIDDALKIYGEMINSGHVPDKELIETYLGCLCEMGRIVEARKCIDSLQRFGYTVPLSYSLFIRALCRARKVEEALKLVEEAGAEKTNVEKLTYGSIVHGLLQKGKLEEALTKVNTMKQEGITPTIHVYTSLIVHFFKEKQVEKAIQIYAEMLESGYEPNVVTYSALIRGYMNVGRYNDAWNVFYRMKFKGPFPDFKTYSMFLSCLCKVGKSEEAMRLISEMLESGIVPSTINFRTVFYGLNREGKQGLARVVLQQKSELIRKRKLIT