Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47840.t1 | XP_003604643.1 | 86.7 | 83 | 11 | 0 | 5 | 87 | 27 | 109 | 1.70E-33 | 151.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47840.t1 | Q84YK7 | 67.2 | 67 | 22 | 0 | 21 | 87 | 25 | 91 | 2.1e-21 | 102.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47840.t1 | A8TVQ0 | 86.7 | 83 | 11 | 0 | 5 | 87 | 27 | 109 | 1.2e-33 | 151.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene47840 | 0.817789 | 2.75E-52 | -1.69E-46 |
| MS.gene05240 | MS.gene47840 | 0.827955 | 1.18E-54 | -1.69E-46 |
| MS.gene052702 | MS.gene47840 | 0.815912 | 7.25E-52 | -1.69E-46 |
| MS.gene053887 | MS.gene47840 | 0.803506 | 3.37E-49 | -1.69E-46 |
| MS.gene054277 | MS.gene47840 | 0.840174 | 1.02E-57 | -1.69E-46 |
| MS.gene054742 | MS.gene47840 | 0.801828 | 7.49E-49 | -1.69E-46 |
| MS.gene056590 | MS.gene47840 | 0.808001 | 3.84E-50 | -1.69E-46 |
| MS.gene056591 | MS.gene47840 | 0.808185 | 3.51E-50 | -1.69E-46 |
| MS.gene056748 | MS.gene47840 | 0.801074 | 1.07E-48 | -1.69E-46 |
| MS.gene056920 | MS.gene47840 | 0.81437 | 1.59E-51 | -1.69E-46 |
| MS.gene057261 | MS.gene47840 | 0.800263 | 1.56E-48 | -1.69E-46 |
| MS.gene058450 | MS.gene47840 | 0.800451 | 1.43E-48 | -1.69E-46 |
| MS.gene060087 | MS.gene47840 | 0.802596 | 5.20E-49 | -1.69E-46 |
| MS.gene061038 | MS.gene47840 | 0.804417 | 2.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47840.t1 | MTR_4g015460 | 86.747 | 83 | 11 | 0 | 5 | 87 | 27 | 109 | 5.08e-45 | 151 |
| MS.gene47840.t1 | MTR_4g015420 | 74.419 | 86 | 22 | 0 | 4 | 89 | 49 | 134 | 6.48e-39 | 135 |
| MS.gene47840.t1 | MTR_2g043200 | 70.769 | 65 | 19 | 0 | 25 | 89 | 70 | 134 | 3.69e-27 | 103 |
| MS.gene47840.t1 | MTR_4g083000 | 60.563 | 71 | 28 | 0 | 17 | 87 | 25 | 95 | 5.23e-25 | 97.4 |
| MS.gene47840.t1 | MTR_4g066330 | 52.874 | 87 | 40 | 1 | 4 | 89 | 25 | 111 | 1.27e-24 | 96.3 |
| MS.gene47840.t1 | MTR_2g079580 | 57.971 | 69 | 29 | 0 | 19 | 87 | 31 | 99 | 2.30e-24 | 95.1 |
| MS.gene47840.t1 | MTR_2g079550 | 57.971 | 69 | 29 | 0 | 19 | 87 | 29 | 97 | 2.80e-24 | 95.1 |
| MS.gene47840.t1 | MTR_2g079580 | 57.971 | 69 | 29 | 0 | 19 | 87 | 31 | 99 | 3.06e-24 | 95.1 |
| MS.gene47840.t1 | MTR_4g066640 | 61.111 | 72 | 27 | 1 | 12 | 82 | 31 | 102 | 1.04e-23 | 92.8 |
| MS.gene47840.t1 | MTR_6g078380 | 60.870 | 69 | 26 | 1 | 20 | 87 | 36 | 104 | 1.36e-23 | 93.2 |
| MS.gene47840.t1 | MTR_4g066630 | 55.422 | 83 | 35 | 2 | 2 | 82 | 20 | 102 | 2.30e-23 | 92.0 |
| MS.gene47840.t1 | MTR_4g066640 | 61.111 | 72 | 27 | 1 | 12 | 82 | 31 | 102 | 2.54e-23 | 92.4 |
| MS.gene47840.t1 | MTR_6g078450 | 63.768 | 69 | 24 | 1 | 20 | 87 | 36 | 104 | 2.70e-23 | 92.4 |
| MS.gene47840.t1 | MTR_4g066580 | 58.904 | 73 | 29 | 1 | 16 | 87 | 35 | 107 | 3.40e-23 | 91.7 |
| MS.gene47840.t1 | MTR_4g066630 | 55.422 | 83 | 35 | 2 | 2 | 82 | 20 | 102 | 3.44e-23 | 92.0 |
| MS.gene47840.t1 | MTR_4g067040 | 57.333 | 75 | 31 | 1 | 9 | 82 | 23 | 97 | 3.47e-23 | 91.7 |
| MS.gene47840.t1 | MTR_6g078450 | 63.768 | 69 | 24 | 1 | 20 | 87 | 36 | 104 | 3.76e-23 | 92.0 |
| MS.gene47840.t1 | MTR_4g066630 | 55.422 | 83 | 35 | 2 | 2 | 82 | 20 | 102 | 3.99e-23 | 91.7 |
| MS.gene47840.t1 | MTR_3g028720 | 58.904 | 73 | 29 | 1 | 16 | 87 | 34 | 106 | 4.10e-23 | 91.3 |
| MS.gene47840.t1 | MTR_4g067040 | 57.333 | 75 | 31 | 1 | 9 | 82 | 23 | 97 | 4.24e-23 | 91.3 |
| MS.gene47840.t1 | MTR_3g028720 | 58.904 | 73 | 29 | 1 | 16 | 87 | 34 | 106 | 4.38e-23 | 91.7 |
| MS.gene47840.t1 | MTR_3g028720 | 58.904 | 73 | 29 | 1 | 16 | 87 | 34 | 106 | 5.42e-23 | 91.3 |
| MS.gene47840.t1 | MTR_4g066630 | 55.422 | 83 | 35 | 2 | 2 | 82 | 20 | 102 | 6.03e-23 | 91.7 |
| MS.gene47840.t1 | MTR_4g066580 | 58.904 | 73 | 29 | 1 | 16 | 87 | 35 | 107 | 6.52e-23 | 91.3 |
| MS.gene47840.t1 | MTR_3g028720 | 58.904 | 73 | 29 | 1 | 16 | 87 | 34 | 106 | 7.85e-23 | 91.3 |
| MS.gene47840.t1 | MTR_4g066590 | 65.625 | 64 | 21 | 1 | 20 | 82 | 33 | 96 | 1.05e-22 | 90.9 |
| MS.gene47840.t1 | MTR_2g098540 | 54.762 | 84 | 35 | 3 | 1 | 82 | 12 | 94 | 3.21e-22 | 89.4 |
| MS.gene47840.t1 | MTR_2g098520 | 60.294 | 68 | 26 | 1 | 16 | 82 | 30 | 97 | 7.52e-22 | 88.6 |
| MS.gene47840.t1 | MTR_4g066280 | 48.235 | 85 | 43 | 1 | 6 | 89 | 27 | 111 | 9.63e-22 | 88.2 |
| MS.gene47840.t1 | MTR_2g022710 | 54.412 | 68 | 31 | 0 | 20 | 87 | 35 | 102 | 1.04e-21 | 87.8 |
| MS.gene47840.t1 | MTR_2g022710 | 54.412 | 68 | 31 | 0 | 20 | 87 | 35 | 102 | 1.11e-21 | 87.4 |
| MS.gene47840.t1 | MTR_2g022710 | 54.412 | 68 | 31 | 0 | 20 | 87 | 35 | 102 | 1.16e-21 | 87.4 |
| MS.gene47840.t1 | MTR_2g022710 | 54.412 | 68 | 31 | 0 | 20 | 87 | 35 | 102 | 1.18e-21 | 87.8 |
| MS.gene47840.t1 | MTR_2g022710 | 54.412 | 68 | 31 | 0 | 20 | 87 | 35 | 102 | 1.24e-21 | 87.8 |
| MS.gene47840.t1 | MTR_2g022710 | 54.412 | 68 | 31 | 0 | 20 | 87 | 35 | 102 | 1.57e-21 | 87.4 |
| MS.gene47840.t1 | MTR_4g066210 | 60.000 | 70 | 27 | 1 | 19 | 87 | 42 | 111 | 2.19e-21 | 87.0 |
| MS.gene47840.t1 | MTR_2g098790 | 53.750 | 80 | 35 | 2 | 4 | 82 | 23 | 101 | 3.16e-21 | 86.7 |
| MS.gene47840.t1 | MTR_4g023000 | 47.872 | 94 | 45 | 2 | 3 | 92 | 7 | 100 | 5.82e-21 | 85.9 |
| MS.gene47840.t1 | MTR_3g026280 | 56.944 | 72 | 30 | 1 | 12 | 82 | 14 | 85 | 8.86e-21 | 85.5 |
| MS.gene47840.t1 | MTR_3g033810 | 56.522 | 69 | 30 | 0 | 19 | 87 | 20 | 88 | 9.22e-21 | 85.1 |
| MS.gene47840.t1 | MTR_4g131800 | 56.061 | 66 | 29 | 0 | 17 | 82 | 513 | 578 | 1.61e-20 | 84.7 |
| MS.gene47840.t1 | MTR_6g078330 | 48.913 | 92 | 42 | 3 | 1 | 87 | 14 | 105 | 1.62e-20 | 84.3 |
| MS.gene47840.t1 | MTR_4g066240 | 61.538 | 65 | 24 | 1 | 19 | 82 | 35 | 99 | 1.71e-20 | 84.3 |
| MS.gene47840.t1 | MTR_4g066240 | 55.263 | 76 | 32 | 2 | 9 | 82 | 24 | 99 | 2.03e-20 | 84.3 |
| MS.gene47840.t1 | MTR_4g066240 | 55.263 | 76 | 32 | 2 | 9 | 82 | 24 | 99 | 2.11e-20 | 84.3 |
| MS.gene47840.t1 | MTR_6g078330 | 48.913 | 92 | 42 | 3 | 1 | 87 | 14 | 105 | 2.46e-20 | 84.0 |
| MS.gene47840.t1 | MTR_3g033790 | 55.072 | 69 | 31 | 0 | 19 | 87 | 18 | 86 | 4.28e-20 | 83.6 |
| MS.gene47840.t1 | MTR_5g044000 | 42.000 | 100 | 37 | 1 | 9 | 87 | 14 | 113 | 8.26e-20 | 82.8 |
| MS.gene47840.t1 | MTR_5g071520 | 50.617 | 81 | 39 | 1 | 10 | 89 | 29 | 109 | 1.58e-19 | 81.6 |
| MS.gene47840.t1 | MTR_2g022760 | 45.455 | 88 | 47 | 1 | 1 | 87 | 17 | 104 | 9.12e-19 | 79.7 |
| MS.gene47840.t1 | MTR_0110s0020 | 43.038 | 79 | 45 | 0 | 9 | 87 | 32 | 110 | 1.61e-18 | 78.2 |
| MS.gene47840.t1 | MTR_0110s0040 | 43.038 | 79 | 45 | 0 | 9 | 87 | 32 | 110 | 2.82e-18 | 78.2 |
| MS.gene47840.t1 | MTR_0110s0040 | 43.038 | 79 | 45 | 0 | 9 | 87 | 32 | 110 | 4.86e-18 | 77.4 |
| MS.gene47840.t1 | MTR_0110s0030 | 43.038 | 79 | 45 | 0 | 9 | 87 | 32 | 110 | 5.58e-18 | 77.4 |
| MS.gene47840.t1 | MTR_4g081530 | 39.744 | 78 | 47 | 0 | 10 | 87 | 14 | 91 | 6.58e-18 | 77.4 |
| MS.gene47840.t1 | MTR_4g131810 | 53.125 | 64 | 29 | 1 | 25 | 87 | 33 | 96 | 1.47e-17 | 76.3 |
| MS.gene47840.t1 | MTR_7g068910 | 37.209 | 86 | 54 | 0 | 2 | 87 | 13 | 98 | 2.14e-16 | 72.8 |
| MS.gene47840.t1 | MTR_3g026400 | 51.471 | 68 | 32 | 1 | 21 | 87 | 38 | 105 | 1.01e-15 | 70.9 |
| MS.gene47840.t1 | MTR_1g088610 | 51.471 | 68 | 31 | 1 | 21 | 88 | 28 | 93 | 1.28e-15 | 70.9 |
| MS.gene47840.t1 | MTR_3g026400 | 50.000 | 70 | 34 | 1 | 19 | 87 | 36 | 105 | 1.28e-15 | 70.9 |
| MS.gene47840.t1 | MTR_7g068910 | 39.024 | 82 | 50 | 0 | 2 | 83 | 13 | 94 | 1.67e-15 | 70.5 |
| MS.gene47840.t1 | MTR_1g088630 | 50.746 | 67 | 31 | 1 | 22 | 88 | 29 | 93 | 2.86e-15 | 69.3 |
| MS.gene47840.t1 | MTR_1g088630 | 50.746 | 67 | 31 | 1 | 22 | 88 | 29 | 93 | 3.41e-15 | 69.3 |
| MS.gene47840.t1 | MTR_5g068740 | 50.000 | 68 | 32 | 1 | 21 | 88 | 28 | 93 | 3.78e-15 | 69.3 |
| MS.gene47840.t1 | MTR_3g026620 | 48.000 | 75 | 36 | 2 | 14 | 87 | 34 | 106 | 2.06e-14 | 67.4 |
| MS.gene47840.t1 | MTR_4g016920 | 43.939 | 66 | 37 | 0 | 22 | 87 | 29 | 94 | 2.52e-13 | 64.3 |
| MS.gene47840.t1 | MTR_7g033860 | 50.000 | 68 | 31 | 2 | 22 | 87 | 50 | 116 | 2.72e-13 | 63.9 |
| MS.gene47840.t1 | MTR_0108s0030 | 47.761 | 67 | 34 | 1 | 22 | 87 | 5 | 71 | 5.74e-13 | 63.2 |
| MS.gene47840.t1 | MTR_8g038650 | 49.057 | 53 | 27 | 0 | 29 | 81 | 7 | 59 | 6.19e-11 | 55.8 |
| MS.gene47840.t1 | MTR_7g051650 | 48.485 | 66 | 26 | 2 | 21 | 85 | 76 | 134 | 8.84e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47840.t1 | AT3G18070 | 52.941 | 68 | 32 | 0 | 20 | 87 | 30 | 97 | 4.82e-22 | 88.6 |
| MS.gene47840.t1 | AT3G18070 | 50.000 | 76 | 35 | 1 | 20 | 92 | 30 | 105 | 5.55e-22 | 87.8 |
| MS.gene47840.t1 | AT1G26560 | 56.522 | 69 | 30 | 0 | 19 | 87 | 31 | 99 | 5.63e-22 | 89.0 |
| MS.gene47840.t1 | AT3G18070 | 52.941 | 68 | 32 | 0 | 20 | 87 | 30 | 97 | 7.52e-22 | 88.6 |
| MS.gene47840.t1 | AT3G18070 | 52.941 | 68 | 32 | 0 | 20 | 87 | 30 | 97 | 8.98e-22 | 88.2 |
| MS.gene47840.t1 | AT3G18070 | 50.000 | 76 | 35 | 1 | 20 | 92 | 30 | 105 | 9.99e-22 | 87.8 |
| MS.gene47840.t1 | AT3G18080 | 51.471 | 68 | 33 | 0 | 20 | 87 | 39 | 106 | 1.54e-20 | 84.7 |
| MS.gene47840.t1 | AT5G44640 | 44.318 | 88 | 48 | 1 | 1 | 87 | 12 | 99 | 1.54e-20 | 84.7 |
| MS.gene47840.t1 | AT5G42260 | 44.318 | 88 | 48 | 1 | 1 | 87 | 12 | 99 | 1.90e-20 | 84.3 |
| MS.gene47840.t1 | AT1G61820 | 49.438 | 89 | 40 | 3 | 8 | 92 | 19 | 106 | 2.01e-20 | 84.3 |
| MS.gene47840.t1 | AT2G44470 | 47.126 | 87 | 46 | 0 | 1 | 87 | 10 | 96 | 6.93e-20 | 82.4 |
| MS.gene47840.t1 | AT2G44470 | 47.126 | 87 | 46 | 0 | 1 | 87 | 10 | 96 | 1.09e-19 | 82.4 |
| MS.gene47840.t1 | AT2G44470 | 47.126 | 87 | 46 | 0 | 1 | 87 | 10 | 96 | 1.45e-19 | 82.0 |
| MS.gene47840.t1 | AT2G25630 | 42.529 | 87 | 49 | 1 | 2 | 87 | 12 | 98 | 3.91e-19 | 80.9 |
| MS.gene47840.t1 | AT5G24540 | 57.353 | 68 | 29 | 0 | 20 | 87 | 32 | 99 | 2.25e-18 | 78.6 |
| MS.gene47840.t1 | AT2G44450 | 46.250 | 80 | 42 | 1 | 9 | 87 | 20 | 99 | 2.49e-18 | 78.6 |
| MS.gene47840.t1 | AT5G24540 | 57.353 | 68 | 29 | 0 | 20 | 87 | 32 | 99 | 2.81e-18 | 78.2 |
| MS.gene47840.t1 | AT1G61810 | 49.275 | 69 | 34 | 1 | 20 | 87 | 33 | 101 | 3.24e-18 | 77.4 |
| MS.gene47840.t1 | AT1G66280 | 44.304 | 79 | 44 | 0 | 9 | 87 | 25 | 103 | 3.36e-18 | 78.2 |
| MS.gene47840.t1 | AT2G44490 | 55.385 | 65 | 28 | 1 | 22 | 85 | 16 | 80 | 3.50e-18 | 78.2 |
| MS.gene47840.t1 | AT5G36890 | 53.030 | 66 | 31 | 0 | 22 | 87 | 18 | 83 | 4.50e-18 | 77.8 |
| MS.gene47840.t1 | AT2G44460 | 47.436 | 78 | 41 | 0 | 10 | 87 | 19 | 96 | 4.75e-18 | 77.8 |
| MS.gene47840.t1 | AT5G36890 | 53.030 | 66 | 31 | 0 | 22 | 87 | 18 | 83 | 4.79e-18 | 77.8 |
| MS.gene47840.t1 | AT1G61810 | 49.275 | 69 | 34 | 1 | 20 | 87 | 33 | 101 | 8.12e-18 | 77.0 |
| MS.gene47840.t1 | AT1G61810 | 49.275 | 69 | 34 | 1 | 20 | 87 | 33 | 101 | 9.51e-18 | 77.0 |
| MS.gene47840.t1 | AT3G09260 | 44.444 | 81 | 41 | 1 | 7 | 87 | 26 | 102 | 1.01e-17 | 76.6 |
| MS.gene47840.t1 | AT1G61810 | 49.275 | 69 | 34 | 1 | 20 | 87 | 33 | 101 | 1.02e-17 | 76.6 |
| MS.gene47840.t1 | AT4G21760 | 57.143 | 56 | 24 | 0 | 25 | 80 | 59 | 114 | 2.44e-17 | 75.5 |
| MS.gene47840.t1 | AT4G21760 | 57.143 | 56 | 24 | 0 | 25 | 80 | 59 | 114 | 2.59e-17 | 75.5 |
| MS.gene47840.t1 | AT3G62750 | 45.570 | 79 | 37 | 2 | 9 | 87 | 14 | 86 | 4.00e-17 | 74.7 |
| MS.gene47840.t1 | AT3G62750 | 45.570 | 79 | 37 | 2 | 9 | 87 | 14 | 86 | 4.00e-17 | 74.7 |
| MS.gene47840.t1 | AT3G60140 | 50.000 | 72 | 36 | 0 | 16 | 87 | 22 | 93 | 4.42e-17 | 74.7 |
| MS.gene47840.t1 | AT3G62750 | 45.570 | 79 | 37 | 2 | 9 | 87 | 40 | 112 | 4.84e-17 | 74.7 |
| MS.gene47840.t1 | AT3G62750 | 45.570 | 79 | 37 | 2 | 9 | 87 | 40 | 112 | 5.46e-17 | 74.7 |
| MS.gene47840.t1 | AT3G62750 | 45.570 | 79 | 37 | 2 | 9 | 87 | 14 | 86 | 5.52e-17 | 74.7 |
| MS.gene47840.t1 | AT3G62750 | 45.570 | 79 | 37 | 2 | 9 | 87 | 40 | 112 | 5.55e-17 | 74.7 |
| MS.gene47840.t1 | AT1G45191 | 46.988 | 83 | 34 | 2 | 5 | 87 | 20 | 92 | 6.03e-17 | 74.3 |
| MS.gene47840.t1 | AT1G45191 | 46.988 | 83 | 34 | 2 | 5 | 87 | 20 | 92 | 6.15e-17 | 74.3 |
| MS.gene47840.t1 | AT1G45191 | 46.988 | 83 | 34 | 2 | 5 | 87 | 20 | 92 | 6.62e-17 | 74.3 |
| MS.gene47840.t1 | AT1G45191 | 46.988 | 83 | 34 | 2 | 5 | 87 | 20 | 92 | 6.81e-17 | 74.3 |
| MS.gene47840.t1 | AT1G45191 | 46.988 | 83 | 34 | 2 | 5 | 87 | 20 | 92 | 7.56e-17 | 74.3 |
| MS.gene47840.t1 | AT3G60140 | 50.000 | 72 | 36 | 0 | 16 | 87 | 22 | 93 | 8.23e-17 | 74.3 |
| MS.gene47840.t1 | AT3G21370 | 47.561 | 82 | 37 | 3 | 7 | 87 | 24 | 100 | 8.90e-17 | 73.9 |
| MS.gene47840.t1 | AT5G24550 | 54.412 | 68 | 31 | 0 | 20 | 87 | 32 | 99 | 9.45e-17 | 73.9 |
| MS.gene47840.t1 | AT5G54570 | 50.000 | 68 | 33 | 1 | 14 | 80 | 24 | 91 | 9.45e-17 | 73.9 |
| MS.gene47840.t1 | AT1G60090 | 48.529 | 68 | 31 | 1 | 21 | 88 | 25 | 88 | 9.58e-17 | 73.9 |
| MS.gene47840.t1 | AT1G60090 | 48.529 | 68 | 31 | 1 | 21 | 88 | 25 | 88 | 1.03e-16 | 73.9 |
| MS.gene47840.t1 | AT5G54570 | 50.000 | 68 | 33 | 1 | 14 | 80 | 24 | 91 | 1.06e-16 | 73.9 |
| MS.gene47840.t1 | AT1G66270 | 44.928 | 69 | 38 | 0 | 19 | 87 | 35 | 103 | 1.27e-16 | 73.6 |
| MS.gene47840.t1 | AT1G66270 | 40.506 | 79 | 47 | 0 | 9 | 87 | 25 | 103 | 1.29e-16 | 73.6 |
| MS.gene47840.t1 | AT1G52400 | 43.373 | 83 | 45 | 1 | 5 | 87 | 26 | 106 | 2.04e-16 | 73.2 |
| MS.gene47840.t1 | AT1G52400 | 43.373 | 83 | 45 | 1 | 5 | 87 | 26 | 106 | 2.04e-16 | 73.2 |
| MS.gene47840.t1 | AT3G60130 | 48.571 | 70 | 35 | 1 | 19 | 87 | 29 | 98 | 2.17e-16 | 72.8 |
| MS.gene47840.t1 | AT1G52400 | 44.444 | 81 | 43 | 1 | 7 | 87 | 28 | 106 | 2.18e-16 | 72.8 |
| MS.gene47840.t1 | AT4G27830 | 43.529 | 85 | 47 | 1 | 3 | 87 | 6 | 89 | 6.21e-16 | 71.6 |
| MS.gene47840.t1 | AT1G45191 | 46.154 | 91 | 35 | 3 | 5 | 87 | 20 | 104 | 6.95e-16 | 71.6 |
| MS.gene47840.t1 | AT1G60270 | 48.529 | 68 | 32 | 1 | 21 | 88 | 25 | 89 | 7.49e-16 | 71.2 |
| MS.gene47840.t1 | AT1G02850 | 49.296 | 71 | 34 | 1 | 17 | 87 | 23 | 91 | 1.15e-15 | 70.9 |
| MS.gene47840.t1 | AT1G02850 | 49.296 | 71 | 34 | 1 | 17 | 87 | 23 | 91 | 1.43e-15 | 70.5 |
| MS.gene47840.t1 | AT1G02850 | 49.296 | 71 | 34 | 1 | 17 | 87 | 23 | 91 | 1.43e-15 | 70.5 |
| MS.gene47840.t1 | AT1G02850 | 49.296 | 71 | 34 | 1 | 17 | 87 | 23 | 91 | 1.76e-15 | 70.5 |
| MS.gene47840.t1 | AT1G02850 | 49.296 | 71 | 34 | 1 | 17 | 87 | 23 | 91 | 1.76e-15 | 70.5 |
| MS.gene47840.t1 | AT4G22100 | 45.588 | 68 | 33 | 1 | 21 | 88 | 23 | 86 | 2.20e-15 | 70.1 |
| MS.gene47840.t1 | AT2G44480 | 52.239 | 67 | 31 | 1 | 17 | 82 | 63 | 129 | 4.55e-15 | 68.9 |
| MS.gene47840.t1 | AT2G44480 | 52.239 | 67 | 31 | 1 | 17 | 82 | 63 | 129 | 5.34e-15 | 68.9 |
| MS.gene47840.t1 | AT1G75940 | 46.970 | 66 | 35 | 0 | 22 | 87 | 39 | 104 | 5.38e-15 | 68.9 |
| MS.gene47840.t1 | AT4G27820 | 47.297 | 74 | 33 | 2 | 14 | 87 | 19 | 86 | 5.40e-15 | 68.9 |
| MS.gene47840.t1 | AT5G28510 | 40.741 | 81 | 46 | 1 | 7 | 87 | 28 | 106 | 5.59e-15 | 68.9 |
| MS.gene47840.t1 | AT2G44480 | 52.239 | 67 | 31 | 1 | 17 | 82 | 32 | 98 | 6.27e-15 | 68.9 |
| MS.gene47840.t1 | AT2G32860 | 41.772 | 79 | 45 | 1 | 10 | 87 | 84 | 162 | 8.94e-15 | 68.6 |
| MS.gene47840.t1 | AT2G32860 | 41.772 | 79 | 45 | 1 | 10 | 87 | 84 | 162 | 9.12e-15 | 68.6 |
| MS.gene47840.t1 | AT3G60120 | 44.595 | 74 | 41 | 0 | 12 | 85 | 6 | 79 | 1.33e-13 | 65.1 |
| MS.gene47840.t1 | AT1G51470 | 48.529 | 68 | 31 | 2 | 21 | 87 | 46 | 110 | 3.57e-13 | 63.9 |
| MS.gene47840.t1 | AT3G62740 | 39.241 | 79 | 43 | 2 | 9 | 87 | 14 | 87 | 2.31e-12 | 61.6 |
| MS.gene47840.t1 | AT3G62740 | 39.241 | 79 | 43 | 2 | 9 | 87 | 14 | 87 | 2.33e-12 | 61.6 |
| MS.gene47840.t1 | AT1G47600 | 45.588 | 68 | 33 | 2 | 21 | 87 | 46 | 110 | 4.24e-12 | 60.8 |
| MS.gene47840.t1 | AT1G47600 | 45.588 | 68 | 33 | 2 | 21 | 87 | 46 | 110 | 4.24e-12 | 60.8 |
Find 17 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAAAACGTACCTGGTAAT+TGG | 0.306037 | 4.4:-85059598 | None:intergenic |
| AAATATATATACCTGGTGTA+TGG | 0.360290 | 4.4:-85060016 | None:intergenic |
| TGATCACTATCATCGTTATA+AGG | 0.379609 | 4.4:+85060906 | MS.gene47840:CDS |
| GCATAAATAGAGGAAATAAC+AGG | 0.457668 | 4.4:-85059513 | None:intergenic |
| AATATATATACCTGGTGTAT+GGG | 0.492563 | 4.4:-85060015 | None:intergenic |
| CATGAAGACGGAAGAGGACT+TGG | 0.495369 | 4.4:+85059975 | MS.gene47840:CDS |
| ACGGAAGAGGACTTGGTACA+TGG | 0.497433 | 4.4:+85059982 | MS.gene47840:CDS |
| AAAACTGTCAGCATAAATAG+AGG | 0.516772 | 4.4:-85059523 | None:intergenic |
| TACTGGCTCCTCCAATTACC+AGG | 0.536244 | 4.4:+85059587 | MS.gene47840:CDS |
| ACTGCATACAGGGAAGGTAA+AGG | 0.566891 | 4.4:+85060858 | MS.gene47840:intron |
| GCTGTACATGAAGACGGAAG+AGG | 0.576072 | 4.4:+85059969 | MS.gene47840:CDS |
| GATATATTTGCCCATACACC+AGG | 0.579641 | 4.4:+85060005 | MS.gene47840:CDS |
| AAAACGTACCTGGTAATTGG+AGG | 0.599628 | 4.4:-85059595 | None:intergenic |
| CATACAGGGAAGGTAAAGGA+TGG | 0.601036 | 4.4:+85060862 | MS.gene47840:intron |
| CGGAAGAGGACTTGGTACAT+GGG | 0.613526 | 4.4:+85059983 | MS.gene47840:CDS |
| GAAGGTGCTGTACATGAAGA+CGG | 0.652249 | 4.4:+85059963 | MS.gene47840:CDS |
| GTGTTGATAATGTAGTACGA+AGG | 0.730862 | 4.4:+85059945 | MS.gene47840:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAATCGTTATA+AGG | + | chr4.4:85060941-85060960 | MS.gene47840:intron | 10.0% |
| !!! | AAATTATTTGATTTTTTTGA+AGG | - | chr4.4:85061037-85061056 | None:intergenic | 10.0% |
| !!! | AATATATTTTTTTACACTAT+CGG | - | chr4.4:85060649-85060668 | None:intergenic | 10.0% |
| !!! | ATTTTACTTTCTATTATATT+AGG | + | chr4.4:85061151-85061170 | MS.gene47840:intron | 10.0% |
| !!! | ATTTTTTTTTTTTTGAAAGA+AGG | - | chr4.4:85060934-85060953 | None:intergenic | 10.0% |
| !! | AAGAAAAAAATATATATACC+TGG | - | chr4.4:85060026-85060045 | None:intergenic | 15.0% |
| !! | AAGAGATAAAAAAAAATTGA+AGG | - | chr4.4:85060414-85060433 | None:intergenic | 15.0% |
| !! | TATAGATTGATTATAATTGA+CGG | - | chr4.4:85060466-85060485 | None:intergenic | 15.0% |
| !!! | AAATAATTTTAGTGATCAAA+AGG | + | chr4.4:85061048-85061067 | MS.gene47840:intron | 15.0% |
| !!! | GGAATTAAACATAATTTTTT+TGG | - | chr4.4:85059701-85059720 | None:intergenic | 15.0% |
| !!! | TCAATTTTTTTTTATCTCTT+TGG | + | chr4.4:85060414-85060433 | MS.gene47840:intron | 15.0% |
| !!! | TTTATTTTTATTGCTGTATA+TGG | - | chr4.4:85060144-85060163 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTGAAGGTCTT+GGG | - | chr4.4:85060407-85060426 | None:intergenic | 20.0% |
| !! | ATATAAATCATCTGAAAGTT+TGG | - | chr4.4:85060515-85060534 | None:intergenic | 20.0% |
| !! | GAAATTATATATCACATTAG+AGG | - | chr4.4:85060969-85060988 | None:intergenic | 20.0% |
| !! | GTAAAAAAAATGTATGCTAT+TGG | + | chr4.4:85061089-85061108 | MS.gene47840:intron | 20.0% |
| !! | TAAAAAAAAATTGAAGGTCT+TGG | - | chr4.4:85060408-85060427 | None:intergenic | 20.0% |
| !! | TATTGAATCTTAAGAATTTG+AGG | + | chr4.4:85059906-85059925 | MS.gene47840:intron | 20.0% |
| !!! | TCTTTTCTTATATTTTAGAC+CGG | - | chr4.4:85059812-85059831 | None:intergenic | 20.0% |
| !!! | TTTAAGACATGTTTTTTCTT+TGG | - | chr4.4:85059741-85059760 | None:intergenic | 20.0% |
| ! | AAATATATATACCTGGTGTA+TGG | - | chr4.4:85060019-85060038 | None:intergenic | 25.0% |
| ! | AATATATATACCTGGTGTAT+GGG | - | chr4.4:85060018-85060037 | None:intergenic | 25.0% |
| ! | AATTCCTAATGCTATAAGAT+TGG | + | chr4.4:85059715-85059734 | MS.gene47840:intron | 25.0% |
| ! | GACAATGCATAATATATACA+AGG | - | chr4.4:85060254-85060273 | None:intergenic | 25.0% |
| ! | GACTAAAATGATTTGATCTA+CGG | - | chr4.4:85061015-85061034 | None:intergenic | 25.0% |
| ! | GTATGAGTAGTTCAATTATA+GGG | - | chr4.4:85060444-85060463 | None:intergenic | 25.0% |
| ! | TTTCCATTTCTCTAAATTTC+TGG | - | chr4.4:85059777-85059796 | None:intergenic | 25.0% |
| !! | ATTTTTATTGCTGTATATGG+TGG | - | chr4.4:85060141-85060160 | None:intergenic | 25.0% |
| !! | TCTTTTCTTCAATATCTAAC+AGG | - | chr4.4:85060731-85060750 | None:intergenic | 25.0% |
| !!! | ATGGAAAGTAATACTTTTTC+CGG | + | chr4.4:85059790-85059809 | MS.gene47840:intron | 25.0% |
| !!! | TATGCTTTTGCTTTTTGTAA+CGG | + | chr4.4:85059668-85059687 | MS.gene47840:intron | 25.0% |
| AAAACTGTCAGCATAAATAG+AGG | - | chr4.4:85059526-85059545 | None:intergenic | 30.0% | |
| AATTGTTGTAACTGCATACA+GGG | + | chr4.4:85060848-85060867 | MS.gene47840:intron | 30.0% | |
| AGAGTTTATAGACAAGTCAT+AGG | + | chr4.4:85060570-85060589 | MS.gene47840:intron | 30.0% | |
| AGTCCAGAAATTTAGAGAAA+TGG | + | chr4.4:85059771-85059790 | MS.gene47840:intron | 30.0% | |
| GCATAAATAGAGGAAATAAC+AGG | - | chr4.4:85059516-85059535 | None:intergenic | 30.0% | |
| GGTATGAGTAGTTCAATTAT+AGG | - | chr4.4:85060445-85060464 | None:intergenic | 30.0% | |
| TAATTGTTGTAACTGCATAC+AGG | + | chr4.4:85060847-85060866 | MS.gene47840:intron | 30.0% | |
| TGATCACTATCATCGTTATA+AGG | + | chr4.4:85060906-85060925 | MS.gene47840:CDS | 30.0% | |
| TGCATAATATATACAAGGTC+CGG | - | chr4.4:85060249-85060268 | None:intergenic | 30.0% | |
| !!! | TCTTGCCTTAGGAATTTTTT+TGG | + | chr4.4:85060203-85060222 | MS.gene47840:intron | 30.0% |
| ACAATGTTACAAAACGTACC+TGG | - | chr4.4:85059608-85059627 | None:intergenic | 35.0% | |
| ACATGAACATATCTTGCCTT+AGG | + | chr4.4:85060192-85060211 | MS.gene47840:intron | 35.0% | |
| CACCACCAAAAAAATTCCTA+AGG | - | chr4.4:85060211-85060230 | None:intergenic | 35.0% | |
| CATAATATATACAAGGTCCG+GGG | - | chr4.4:85060247-85060266 | None:intergenic | 35.0% | |
| GCATAATATATACAAGGTCC+GGG | - | chr4.4:85060248-85060267 | None:intergenic | 35.0% | |
| GTACCAAAAACAAAACCTTC+CGG | - | chr4.4:85059570-85059589 | None:intergenic | 35.0% | |
| TACAAAACGTACCTGGTAAT+TGG | - | chr4.4:85059601-85059620 | None:intergenic | 35.0% | |
| TGTGTATGTTACTATGCATG+TGG | + | chr4.4:85059625-85059644 | MS.gene47840:intron | 35.0% | |
| TTCATGTAGCTTTCTCTATG+TGG | - | chr4.4:85060179-85060198 | None:intergenic | 35.0% | |
| TTGGCCAATCTTATAGCATT+AGG | - | chr4.4:85059722-85059741 | None:intergenic | 35.0% | |
| ! | CTATCCACTATCTAGGTTTT+TGG | - | chr4.4:85060080-85060099 | None:intergenic | 35.0% |
| ! | TGCTGTATATGGTGGTTTTT+AGG | - | chr4.4:85060133-85060152 | None:intergenic | 35.0% |
| !! | CAAAAACCTAGATAGTGGAT+AGG | + | chr4.4:85060078-85060097 | MS.gene47840:intron | 35.0% |
| !! | GTGTTGATAATGTAGTACGA+AGG | + | chr4.4:85059945-85059964 | MS.gene47840:intron | 35.0% |
| !!! | CTGACAGTTTTGAGCTAAAT+CGG | + | chr4.4:85059535-85059554 | MS.gene47840:CDS | 35.0% |
| !!! | CTTAGGAATTTTTTTGGTGG+TGG | + | chr4.4:85060209-85060228 | MS.gene47840:intron | 35.0% |
| !!! | GAAGGTTTTGTTTTTGGTAC+TGG | + | chr4.4:85059570-85059589 | MS.gene47840:CDS | 35.0% |
| !!! | TGCCTTAGGAATTTTTTTGG+TGG | + | chr4.4:85060206-85060225 | MS.gene47840:intron | 35.0% |
| !!! | TTTCCGGAAGGTTTTGTTTT+TGG | + | chr4.4:85059564-85059583 | MS.gene47840:CDS | 35.0% |
| AAAACGTACCTGGTAATTGG+AGG | - | chr4.4:85059598-85059617 | None:intergenic | 40.0% | |
| ACAACCATGTGAGTTTAGCT+CGG | - | chr4.4:85060328-85060347 | None:intergenic | 40.0% | |
| ATGGTTGTAGTGGTGTGATT+TGG | + | chr4.4:85060340-85060359 | MS.gene47840:intron | 40.0% | |
| CTAAACTCACATGGTTGTAG+TGG | + | chr4.4:85060330-85060349 | MS.gene47840:intron | 40.0% | |
| CTAGCCAAAAACCTAGATAG+TGG | + | chr4.4:85060073-85060092 | MS.gene47840:intron | 40.0% | |
| GATATATTTGCCCATACACC+AGG | + | chr4.4:85060005-85060024 | MS.gene47840:CDS | 40.0% | |
| TAAACTCACGAGGAAGTCTT+AGG | + | chr4.4:85060288-85060307 | MS.gene47840:intron | 40.0% | |
| TTGTAGCCTATCCACTATCT+AGG | - | chr4.4:85060087-85060106 | None:intergenic | 40.0% | |
| ! | TGAGTTTAGCTCAGTTGGTA+TGG | - | chr4.4:85060276-85060295 | None:intergenic | 40.0% |
| ! | TTGTAGTGGTGTGATTTGGA+CGG | + | chr4.4:85060344-85060363 | MS.gene47840:intron | 40.0% |
| !! | TATATGGTGGTTTTTAGGCG+TGG | - | chr4.4:85060128-85060147 | None:intergenic | 40.0% |
| AACTCTAATGCCACTCCATG+TGG | + | chr4.4:85060788-85060807 | MS.gene47840:intron | 45.0% | |
| ACTGCATACAGGGAAGGTAA+AGG | + | chr4.4:85060858-85060877 | MS.gene47840:intron | 45.0% | |
| CATACAGGGAAGGTAAAGGA+TGG | + | chr4.4:85060862-85060881 | MS.gene47840:intron | 45.0% | |
| GTTGTAACTGCATACAGGGA+AGG | + | chr4.4:85060852-85060871 | MS.gene47840:intron | 45.0% | |
| ! | AGGCGTGGTCATGATTTGTA+AGG | - | chr4.4:85060113-85060132 | None:intergenic | 45.0% |
| ! | GCTAAATCGGAGCAGTTTTC+CGG | + | chr4.4:85059548-85059567 | MS.gene47840:CDS | 45.0% |
| !! | GAAGGTGCTGTACATGAAGA+CGG | + | chr4.4:85059963-85059982 | MS.gene47840:CDS | 45.0% |
| !!! | GGAATTTTTTTGGTGGTGGC+CGG | + | chr4.4:85060213-85060232 | MS.gene47840:intron | 45.0% |
| ATGCCACTCCATGTGGCTAA+TGG | + | chr4.4:85060795-85060814 | MS.gene47840:intron | 50.0% | |
| CATGAAGACGGAAGAGGACT+TGG | + | chr4.4:85059975-85059994 | MS.gene47840:CDS | 50.0% | |
| CCAACTGAGCTAAACTCACG+AGG | + | chr4.4:85060278-85060297 | MS.gene47840:intron | 50.0% | |
| CTAGCCGAGCTAAACTCACA+TGG | + | chr4.4:85060321-85060340 | MS.gene47840:intron | 50.0% | |
| GATTCCACCCATTAGCCACA+TGG | - | chr4.4:85060806-85060825 | None:intergenic | 50.0% | |
| GCTGTACATGAAGACGGAAG+AGG | + | chr4.4:85059969-85059988 | MS.gene47840:CDS | 50.0% | |
| TGCCACTCCATGTGGCTAAT+GGG | + | chr4.4:85060796-85060815 | MS.gene47840:intron | 50.0% | |
| ! | AATCGGAGCAGTTTTCCGGA+AGG | + | chr4.4:85059552-85059571 | MS.gene47840:CDS | 50.0% |
| ! | ACGGAAGAGGACTTGGTACA+TGG | + | chr4.4:85059982-85060001 | MS.gene47840:CDS | 50.0% |
| ! | CCTCGTGAGTTTAGCTCAGT+TGG | - | chr4.4:85060281-85060300 | None:intergenic | 50.0% |
| ! | CGGAAGAGGACTTGGTACAT+GGG | + | chr4.4:85059983-85060002 | MS.gene47840:CDS | 50.0% |
| !! | TACTGGCTCCTCCAATTACC+AGG | + | chr4.4:85059587-85059606 | MS.gene47840:CDS | 50.0% |
| AAGGTCCGGGGTTCTTACTC+CGG | - | chr4.4:85060235-85060254 | None:intergenic | 55.0% | |
| CACCCATTAGCCACATGGAG+TGG | - | chr4.4:85060801-85060820 | None:intergenic | 55.0% | |
| CACTCCATGTGGCTAATGGG+TGG | + | chr4.4:85060799-85060818 | MS.gene47840:intron | 55.0% | |
| ! | GTGTGATTTGGACGGTGTCG+TGG | + | chr4.4:85060352-85060371 | MS.gene47840:intron | 55.0% |
| !! | TGATTTGGACGGTGTCGTGG+TGG | + | chr4.4:85060355-85060374 | MS.gene47840:intron | 55.0% |
| !! | CGGTGTCGTGGTGGAAACTC+TGG | + | chr4.4:85060364-85060383 | MS.gene47840:intron | 60.0% |
| GGTGGCCGGAGTAAGAACCC+CGG | + | chr4.4:85060227-85060246 | MS.gene47840:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 85059492 | 85061217 | 85059492 | ID=MS.gene47840 |
| chr4.4 | mRNA | 85059492 | 85061217 | 85059492 | ID=MS.gene47840.t1;Parent=MS.gene47840 |
| chr4.4 | exon | 85059492 | 85059608 | 85059492 | ID=MS.gene47840.t1.exon1;Parent=MS.gene47840.t1 |
| chr4.4 | CDS | 85059492 | 85059608 | 85059492 | ID=cds.MS.gene47840.t1;Parent=MS.gene47840.t1 |
| chr4.4 | exon | 85059960 | 85060026 | 85059960 | ID=MS.gene47840.t1.exon2;Parent=MS.gene47840.t1 |
| chr4.4 | CDS | 85059960 | 85060026 | 85059960 | ID=cds.MS.gene47840.t1;Parent=MS.gene47840.t1 |
| chr4.4 | exon | 85060869 | 85060927 | 85060869 | ID=MS.gene47840.t1.exon3;Parent=MS.gene47840.t1 |
| chr4.4 | CDS | 85060869 | 85060927 | 85060869 | ID=cds.MS.gene47840.t1;Parent=MS.gene47840.t1 |
| chr4.4 | exon | 85061173 | 85061217 | 85061173 | ID=MS.gene47840.t1.exon4;Parent=MS.gene47840.t1 |
| chr4.4 | CDS | 85061173 | 85061217 | 85061173 | ID=cds.MS.gene47840.t1;Parent=MS.gene47840.t1 |
| Gene Sequence |
| Protein sequence |
