Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48066.t1 | XP_003617683.1 | 90.2 | 205 | 13 | 2 | 1 | 199 | 1 | 204 | 1.20E-94 | 355.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48066.t1 | Q94EH2 | 70.7 | 167 | 41 | 2 | 35 | 193 | 43 | 209 | 1.2e-55 | 217.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48066.t1 | G7K4C7 | 90.2 | 205 | 13 | 2 | 1 | 199 | 1 | 204 | 8.7e-95 | 355.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049283 | MS.gene48066 | -0.806876 | 6.65E-50 | -1.69E-46 |
| MS.gene054489 | MS.gene48066 | -0.808 | 3.84E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene48066 | -0.815284 | 1.00E-51 | -1.69E-46 |
| MS.gene054893 | MS.gene48066 | -0.818467 | 1.93E-52 | -1.69E-46 |
| MS.gene056973 | MS.gene48066 | -0.807719 | 4.41E-50 | -1.69E-46 |
| MS.gene058279 | MS.gene48066 | -0.823865 | 1.10E-53 | -1.69E-46 |
| MS.gene059224 | MS.gene48066 | -0.834017 | 3.82E-56 | -1.69E-46 |
| MS.gene05985 | MS.gene48066 | 0.81021 | 1.29E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene48066 | -0.816523 | 5.29E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48066.t1 | MTR_5g094300 | 90.244 | 205 | 13 | 2 | 1 | 199 | 1 | 204 | 4.01e-120 | 338 |
| MS.gene48066.t1 | MTR_5g094300 | 85.930 | 199 | 16 | 2 | 1 | 199 | 1 | 187 | 9.49e-108 | 307 |
| MS.gene48066.t1 | MTR_4g077950 | 49.254 | 67 | 34 | 0 | 72 | 138 | 97 | 163 | 6.65e-14 | 67.0 |
| MS.gene48066.t1 | MTR_2g070380 | 49.254 | 67 | 34 | 0 | 72 | 138 | 97 | 163 | 6.65e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48066.t1 | AT4G26670 | 62.814 | 199 | 64 | 4 | 5 | 193 | 11 | 209 | 2.37e-75 | 226 |
| MS.gene48066.t1 | AT5G55510 | 60.417 | 192 | 70 | 1 | 15 | 200 | 23 | 214 | 1.65e-74 | 224 |
| MS.gene48066.t1 | AT3G10110 | 43.284 | 67 | 38 | 0 | 72 | 138 | 100 | 166 | 6.87e-12 | 61.6 |
Find 59 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCAGGGTTGCCTCACTTT+TGG | 0.154502 | 5.3:-76746608 | MS.gene48066:CDS |
| TTCCGCCGGTGGCGCTTTAA+TGG | 0.189872 | 5.3:-76749388 | MS.gene48066:CDS |
| CTGCCCATGTCCTGGAAAAC+AGG | 0.282308 | 5.3:-76746533 | MS.gene48066:CDS |
| AAAGCTTCTTTCAATTCATT+TGG | 0.319112 | 5.3:+76746458 | None:intergenic |
| GATGGCGGTGTTGGGAGAAT+TGG | 0.325669 | 5.3:+76749455 | None:intergenic |
| TCCGCCGGTGGCGCTTTAAT+GGG | 0.333280 | 5.3:-76749387 | MS.gene48066:intron |
| GTCATTAACGCTGGAGTAGC+TGG | 0.388658 | 5.3:-76747915 | MS.gene48066:CDS |
| GCGGGAACGATGGCGGTGTT+GGG | 0.392409 | 5.3:+76749447 | None:intergenic |
| CATTTGGAAGAGGGAGTTGA+AGG | 0.400267 | 5.3:+76746474 | None:intergenic |
| GCTGGATTGTTTAAGAAGAA+AGG | 0.402455 | 5.3:-76748273 | MS.gene48066:CDS |
| GGCGGGAACGATGGCGGTGT+TGG | 0.404837 | 5.3:+76749446 | None:intergenic |
| TTTGTCTGGAGTTCATAGTT+TGG | 0.413459 | 5.3:-76748061 | MS.gene48066:CDS |
| CACTTGCACTGCCCATGTCC+TGG | 0.433645 | 5.3:-76746541 | MS.gene48066:CDS |
| AAAGGATCCTTTGCAGATGC+GGG | 0.433799 | 5.3:-76748246 | MS.gene48066:CDS |
| ATGGCGGTGTTGGGAGAATT+GGG | 0.443939 | 5.3:+76749456 | None:intergenic |
| TGCATCTTGAAAAGACTTCG+AGG | 0.462635 | 5.3:-76748033 | MS.gene48066:CDS |
| GGAGGGAGCGGCGGGAACGA+TGG | 0.491257 | 5.3:+76749437 | None:intergenic |
| CAGATGTCTTATCGAGATGT+AGG | 0.501456 | 5.3:+76746389 | None:intergenic |
| TTTGGAAGAGGGAGTTGAAG+GGG | 0.501908 | 5.3:+76746476 | None:intergenic |
| TTGGAAGAGGGAGTTGAAGG+GGG | 0.503925 | 5.3:+76746477 | None:intergenic |
| CTTTCAATTCATTTGGAAGA+GGG | 0.504674 | 5.3:+76746465 | None:intergenic |
| AAGACAAACGGAGGGAGCGG+CGG | 0.509174 | 5.3:+76749428 | None:intergenic |
| AGACAAACGGAGGGAGCGGC+GGG | 0.510021 | 5.3:+76749429 | None:intergenic |
| TTCGCCACTGATTCCGCCGG+TGG | 0.514250 | 5.3:-76749399 | MS.gene48066:CDS |
| CGGCGGAATCAGTGGCGAAA+CGG | 0.519179 | 5.3:+76749403 | None:intergenic |
| ATTTGGAAGAGGGAGTTGAA+GGG | 0.523382 | 5.3:+76746475 | None:intergenic |
| CAACCCTGCAAAAGCGCTTG+TGG | 0.524162 | 5.3:+76746620 | None:intergenic |
| AGAATTGGGAACGGAGGAGT+CGG | 0.527066 | 5.3:+76749470 | None:intergenic |
| TCTTTCAATTCATTTGGAAG+AGG | 0.530636 | 5.3:+76746464 | None:intergenic |
| GACATGGGCAGTGCAAGTGC+TGG | 0.532373 | 5.3:+76746545 | None:intergenic |
| GATAAGACAAACGGAGGGAG+CGG | 0.540270 | 5.3:+76749425 | None:intergenic |
| AGCGCCACCGGCGGAATCAG+TGG | 0.542690 | 5.3:+76749395 | None:intergenic |
| TAAAGGATCCTTTGCAGATG+CGG | 0.548481 | 5.3:-76748247 | MS.gene48066:CDS |
| AGACTTCGAGGAAAGGATGA+TGG | 0.553368 | 5.3:-76748021 | MS.gene48066:intron |
| GGAGTAGCTGGATGTTGCAC+GGG | 0.556294 | 5.3:-76747903 | MS.gene48066:CDS |
| CTTGAAAAGACTTCGAGGAA+AGG | 0.562655 | 5.3:-76748028 | MS.gene48066:CDS |
| CGTTTCGCCACTGATTCCGC+CGG | 0.563253 | 5.3:-76749402 | MS.gene48066:CDS |
| GGGAGCGGCGGGAACGATGG+CGG | 0.565959 | 5.3:+76749440 | None:intergenic |
| TGGAGTAGCTGGATGTTGCA+CGG | 0.566090 | 5.3:-76747904 | MS.gene48066:CDS |
| TGCCCATGTCCTGGAAAACA+GGG | 0.580299 | 5.3:-76746532 | MS.gene48066:CDS |
| AGAAGACCCCGCATCTGCAA+AGG | 0.582837 | 5.3:+76748239 | None:intergenic |
| ATATATGCAGTCATTAACGC+TGG | 0.589905 | 5.3:-76747924 | MS.gene48066:intron |
| AAGAAAATGCCCCAAAAGTG+AGG | 0.594359 | 5.3:+76746597 | None:intergenic |
| GGAACCCATTAAAGCGCCAC+CGG | 0.594398 | 5.3:+76749383 | None:intergenic |
| ATGGCGACGGCGGATTCCGA+CGG | 0.594896 | 5.3:-76749525 | MS.gene48066:CDS |
| GGCGAAACGGATAAGACAAA+CGG | 0.596943 | 5.3:+76749416 | None:intergenic |
| ACCCATTAAAGCGCCACCGG+CGG | 0.607759 | 5.3:+76749386 | None:intergenic |
| ATTGGGAACGGAGGAGTCGG+AGG | 0.612660 | 5.3:+76749473 | None:intergenic |
| AGTGGCAGCAATGGCGACGG+CGG | 0.615157 | 5.3:-76749535 | None:intergenic |
| AGTAGTGGCAGCAATGGCGA+CGG | 0.625713 | 5.3:-76749538 | None:intergenic |
| GAGGAATCGTCGTCATGAGG+CGG | 0.635732 | 5.3:+76749492 | None:intergenic |
| TCGGAGGAATCGTCGTCATG+AGG | 0.636042 | 5.3:+76749489 | None:intergenic |
| AGATGCGGGGTCTTCTGCAA+AGG | 0.644010 | 5.3:-76748232 | MS.gene48066:intron |
| AAGGATCCTTTGCAGATGCG+GGG | 0.647122 | 5.3:-76748245 | MS.gene48066:CDS |
| AGGCGGTGTTGTGATACCGT+CGG | 0.666507 | 5.3:+76749509 | None:intergenic |
| GGTGTTGGGAGAATTGGGAA+CGG | 0.678466 | 5.3:+76749461 | None:intergenic |
| GAAACGGATAAGACAAACGG+AGG | 0.691757 | 5.3:+76749419 | None:intergenic |
| AAACGGATAAGACAAACGGA+GGG | 0.704958 | 5.3:+76749420 | None:intergenic |
| GTTGGGAGAATTGGGAACGG+AGG | 0.705073 | 5.3:+76749464 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAAAACTAAAACTGAAT+TGG | + | chr5.3:76746629-76746648 | None:intergenic | 15.0% |
| !! | TTTAAAAGTTAAAAGAATAC+CGG | + | chr5.3:76748062-76748081 | None:intergenic | 15.0% |
| !!! | AAACATTTTTGCTTTAATAA+CGG | - | chr5.3:76747944-76747963 | MS.gene48066:intron | 15.0% |
| !!! | TACTTCAATTTTGAAAAATT+GGG | + | chr5.3:76748410-76748429 | None:intergenic | 15.0% |
| !!! | TTTAAAAATTGTTGTTTGTT+TGG | - | chr5.3:76747071-76747090 | MS.gene48066:intron | 15.0% |
| !! | AGTTTAATATTCTGATTTAG+AGG | - | chr5.3:76748778-76748797 | MS.gene48066:intron | 20.0% |
| !! | ATTTATGAACTAATGAGTAA+TGG | - | chr5.3:76748724-76748743 | MS.gene48066:intron | 20.0% |
| !! | GAATATTAAACTATGTTCAT+AGG | + | chr5.3:76748770-76748789 | None:intergenic | 20.0% |
| !! | TATCATAGTTAGAAAATAAG+AGG | + | chr5.3:76747403-76747422 | None:intergenic | 20.0% |
| !! | TCATAAATTATAAGAAACAG+AGG | + | chr5.3:76748712-76748731 | None:intergenic | 20.0% |
| !! | TGATATATGATAGAACATTA+TGG | - | chr5.3:76747418-76747437 | MS.gene48066:intron | 20.0% |
| !! | TTAAAAGTTAAAAGAATACC+GGG | + | chr5.3:76748061-76748080 | None:intergenic | 20.0% |
| !! | TTTGTGATTTCATTGAATAA+TGG | + | chr5.3:76746914-76746933 | None:intergenic | 20.0% |
| !!! | AACACATACATAGTTTATTT+TGG | - | chr5.3:76747258-76747277 | MS.gene48066:intron | 20.0% |
| !!! | AATTTTCATGTTTTAATCGA+GGG | - | chr5.3:76746646-76746665 | MS.gene48066:intron | 20.0% |
| !!! | ATAAACTATGTATGTGTTTT+TGG | + | chr5.3:76747256-76747275 | None:intergenic | 20.0% |
| !!! | CATTTTCTTTTATTATGGAA+GGG | - | chr5.3:76749339-76749358 | MS.gene48066:intron | 20.0% |
| !!! | CTACTTCAATTTTGAAAAAT+TGG | + | chr5.3:76748411-76748430 | None:intergenic | 20.0% |
| !!! | GCATTTTATCAAAATTTTGT+AGG | + | chr5.3:76746892-76746911 | None:intergenic | 20.0% |
| !!! | TAATTTTCATGTTTTAATCG+AGG | - | chr5.3:76746645-76746664 | MS.gene48066:intron | 20.0% |
| !!! | TCTATCTACGATAATTTTTA+GGG | - | chr5.3:76748809-76748828 | MS.gene48066:intron | 20.0% |
| !!! | TTTAAGAAGAAAGGTTTTAA+AGG | - | chr5.3:76747658-76747677 | MS.gene48066:intron | 20.0% |
| !!! | TTTTCTGATTATTATGCTTA+AGG | - | chr5.3:76747600-76747619 | MS.gene48066:intron | 20.0% |
| ! | AAAGCTTCTTTCAATTCATT+TGG | + | chr5.3:76749467-76749486 | None:intergenic | 25.0% |
| ! | ATCAATGATTAGAACTTAGA+AGG | + | chr5.3:76749181-76749200 | None:intergenic | 25.0% |
| ! | GACTATATTACAGCTATTTA+AGG | + | chr5.3:76748221-76748240 | None:intergenic | 25.0% |
| ! | TATAAAGAAAGAAGGGTAAA+GGG | - | chr5.3:76748132-76748151 | MS.gene48066:intron | 25.0% |
| ! | TATAACAAACATTGTCTGAA+AGG | + | chr5.3:76747226-76747245 | None:intergenic | 25.0% |
| ! | TTCAATGAAATCACAAATGT+TGG | - | chr5.3:76746917-76746936 | MS.gene48066:intron | 25.0% |
| ! | TTGAAAATCCAAACTAAAAG+AGG | + | chr5.3:76746741-76746760 | None:intergenic | 25.0% |
| !! | AACTAAAAGAGGCATAATTA+AGG | + | chr5.3:76746730-76746749 | None:intergenic | 25.0% |
| !! | AAGTGAAACTGATTCTTATA+TGG | - | chr5.3:76747024-76747043 | MS.gene48066:intron | 25.0% |
| !! | ATGAAAGTATAGACATAATC+AGG | + | chr5.3:76747980-76747999 | None:intergenic | 25.0% |
| !! | CTCTATCTACGATAATTTTT+AGG | - | chr5.3:76748808-76748827 | MS.gene48066:intron | 25.0% |
| !! | GCATTTTCTTTTATTATGGA+AGG | - | chr5.3:76749338-76749357 | MS.gene48066:intron | 25.0% |
| !! | GTCTGGTTTATAAAAAATTC+AGG | - | chr5.3:76748436-76748455 | MS.gene48066:intron | 25.0% |
| !! | GTTAACAAGAAATAGCATTT+TGG | - | chr5.3:76747370-76747389 | MS.gene48066:intron | 25.0% |
| !! | TGAAAGTATAGACATAATCA+GGG | + | chr5.3:76747979-76747998 | None:intergenic | 25.0% |
| !! | TTTTCAAAATTGAAGTAGTC+CGG | - | chr5.3:76748413-76748432 | MS.gene48066:intron | 25.0% |
| !!! | AATTTTTTATAAACCAGACC+CGG | + | chr5.3:76748435-76748454 | None:intergenic | 25.0% |
| !!! | ATTGTTGTTTGTTTGGAATT+AGG | - | chr5.3:76747078-76747097 | MS.gene48066:intron | 25.0% |
| !!! | CAATTTACCGTTTTAATCAA+GGG | - | chr5.3:76746758-76746777 | MS.gene48066:intron | 25.0% |
| !!! | GTTTCATTTTTGTACTTGTT+TGG | - | chr5.3:76749243-76749262 | MS.gene48066:intron | 25.0% |
| !!! | TAATTATGCCTCTTTTAGTT+TGG | - | chr5.3:76746730-76746749 | MS.gene48066:intron | 25.0% |
| !!! | TCAATTTACCGTTTTAATCA+AGG | - | chr5.3:76746757-76746776 | MS.gene48066:intron | 25.0% |
| !!! | TTGTTGTTTGTTTGGAATTA+GGG | - | chr5.3:76747079-76747098 | MS.gene48066:intron | 25.0% |
| AAACTGCAAATGTCTAACAA+AGG | + | chr5.3:76747843-76747862 | None:intergenic | 30.0% | |
| ACTAACAACAATAAGCTTTG+TGG | + | chr5.3:76746997-76747016 | None:intergenic | 30.0% | |
| AGAAAAACCGTATCCAAAAA+CGG | + | chr5.3:76746563-76746582 | None:intergenic | 30.0% | |
| ATTGGCGTATAAAGAAAGAA+GGG | - | chr5.3:76748125-76748144 | MS.gene48066:intron | 30.0% | |
| CACTAAACCCTTGATTAAAA+CGG | + | chr5.3:76746768-76746787 | None:intergenic | 30.0% | |
| CATCTTAGTCAGAAAATAAG+AGG | + | chr5.3:76747521-76747540 | None:intergenic | 30.0% | |
| CTTATCATCTAGTATTCTTC+AGG | - | chr5.3:76749275-76749294 | MS.gene48066:intron | 30.0% | |
| CTTTCAATTCATTTGGAAGA+GGG | + | chr5.3:76749460-76749479 | None:intergenic | 30.0% | |
| GTATAAAGAAAGAAGGGTAA+AGG | - | chr5.3:76748131-76748150 | MS.gene48066:intron | 30.0% | |
| TAATATAGTCCCTTATTGGT+GGG | - | chr5.3:76748231-76748250 | MS.gene48066:intron | 30.0% | |
| TATGAAAAACAGACACGAAA+CGG | - | chr5.3:76746855-76746874 | MS.gene48066:intron | 30.0% | |
| TATTGGCGTATAAAGAAAGA+AGG | - | chr5.3:76748124-76748143 | MS.gene48066:intron | 30.0% | |
| TCTTTCAATTCATTTGGAAG+AGG | + | chr5.3:76749461-76749480 | None:intergenic | 30.0% | |
| TCTTTCTTTATACGCCAATA+AGG | + | chr5.3:76748124-76748143 | None:intergenic | 30.0% | |
| TGGAACAAGTTTCAAAGAAA+GGG | + | chr5.3:76748101-76748120 | None:intergenic | 30.0% | |
| TTTCAAAATTGAAGTAGTCC+GGG | - | chr5.3:76748414-76748433 | MS.gene48066:intron | 30.0% | |
| ! | ACTTTTGGATTCCTTAACAA+GGG | + | chr5.3:76748850-76748869 | None:intergenic | 30.0% |
| ! | ATACATTGATTGTCAATGCT+TGG | - | chr5.3:76746803-76746822 | MS.gene48066:intron | 30.0% |
| ! | GAAAGTATAGACATAATCAG+GGG | + | chr5.3:76747978-76747997 | None:intergenic | 30.0% |
| ! | TACTTTTGGATTCCTTAACA+AGG | + | chr5.3:76748851-76748870 | None:intergenic | 30.0% |
| ! | TTTTTGATACCTCAATTAGC+TGG | - | chr5.3:76747574-76747593 | MS.gene48066:intron | 30.0% |
| !! | TGGGGCATTTTCTTTTATTA+TGG | - | chr5.3:76749334-76749353 | MS.gene48066:intron | 30.0% |
| !!! | ACTATGTATGTGTTTTTGGT+TGG | + | chr5.3:76747252-76747271 | None:intergenic | 30.0% |
| !!! | AGAAGCTTTCTCTTTTTTCT+CGG | - | chr5.3:76749478-76749497 | MS.gene48066:CDS | 30.0% |
| !!! | TTATTTTGGAAGTGACAAGA+TGG | - | chr5.3:76747272-76747291 | MS.gene48066:intron | 30.0% |
| AAATGAACTGAAGTTGTGCT+TGG | + | chr5.3:76747159-76747178 | None:intergenic | 35.0% | |
| ACTTCTTGAATCCTAGAATC+AGG | + | chr5.3:76748337-76748356 | None:intergenic | 35.0% | |
| AGTATACCATTTCGTACTAG+TGG | - | chr5.3:76749024-76749043 | MS.gene48066:intron | 35.0% | |
| ATATATGCAGTCATTAACGC+TGG | - | chr5.3:76747998-76748017 | MS.gene48066:intron | 35.0% | |
| ATGCTTAAGGATGCTTGTAA+TGG | - | chr5.3:76747613-76747632 | MS.gene48066:intron | 35.0% | |
| ATTAAGAGTCTACGCAAGAT+TGG | + | chr5.3:76749089-76749108 | None:intergenic | 35.0% | |
| ATTGTCAATGCTTGGAATAC+TGG | - | chr5.3:76746811-76746830 | MS.gene48066:intron | 35.0% | |
| CAACAACAACAACAACAACA+AGG | + | chr5.3:76747487-76747506 | None:intergenic | 35.0% | |
| GCATGAAGTAACAAAAACAG+AGG | + | chr5.3:76748629-76748648 | None:intergenic | 35.0% | |
| GCTGGATTGTTTAAGAAGAA+AGG | - | chr5.3:76747649-76747668 | MS.gene48066:intron | 35.0% | |
| GCTGTAATATAGTCCCTTAT+TGG | - | chr5.3:76748227-76748246 | MS.gene48066:intron | 35.0% | |
| GGTTAAAAGATCGTAACTCT+AGG | + | chr5.3:76749061-76749080 | None:intergenic | 35.0% | |
| GTAATATAGTCCCTTATTGG+TGG | - | chr5.3:76748230-76748249 | MS.gene48066:intron | 35.0% | |
| GTATACCATTTCGTACTAGT+GGG | - | chr5.3:76749025-76749044 | MS.gene48066:intron | 35.0% | |
| GTGGAACAAGTTTCAAAGAA+AGG | + | chr5.3:76748102-76748121 | None:intergenic | 35.0% | |
| TGCTTAAGGATGCTTGTAAT+GGG | - | chr5.3:76747614-76747633 | MS.gene48066:intron | 35.0% | |
| TTAAGAGTCTACGCAAGATT+GGG | + | chr5.3:76749088-76749107 | None:intergenic | 35.0% | |
| TTCAACCTCTGTTCTGTAAA+TGG | - | chr5.3:76748668-76748687 | MS.gene48066:intron | 35.0% | |
| TTCCTTAACATGTACCCTTA+GGG | - | chr5.3:76748955-76748974 | MS.gene48066:intron | 35.0% | |
| TTCTTTATACGCCAATAAGG+TGG | + | chr5.3:76748121-76748140 | None:intergenic | 35.0% | |
| ! | CACTGCACAATTTCTACTTT+TGG | + | chr5.3:76748865-76748884 | None:intergenic | 35.0% |
| ! | TGAAACTTGTTCCACCTTAT+TGG | - | chr5.3:76748107-76748126 | MS.gene48066:intron | 35.0% |
| ! | TTTGTCTGGAGTTCATAGTT+TGG | - | chr5.3:76747861-76747880 | MS.gene48066:intron | 35.0% |
| !! | TAGACATTTGCAGTTTTGTC+TGG | - | chr5.3:76747847-76747866 | MS.gene48066:intron | 35.0% |
| !!! | CTTTTTTTCCCTTTGCTTGA+CGG | + | chr5.3:76749131-76749150 | None:intergenic | 35.0% |
| !!! | TTTTTAGTTGTATTCCACCG+TGG | - | chr5.3:76748263-76748282 | MS.gene48066:CDS | 35.0% |
| AAACGGATAAGACAAACGGA+GGG | + | chr5.3:76746505-76746524 | None:intergenic | 40.0% | |
| AAATGCTAATGTGTGCCCTA+AGG | + | chr5.3:76748973-76748992 | None:intergenic | 40.0% | |
| AAATGTTGGTGTGTCCATGT+CGG | - | chr5.3:76746931-76746950 | MS.gene48066:intron | 40.0% | |
| AACAGAGAAACGAGGAAAAG+TGG | + | chr5.3:76748592-76748611 | None:intergenic | 40.0% | |
| AAGAAAATGCCCCAAAAGTG+AGG | + | chr5.3:76749328-76749347 | None:intergenic | 40.0% | |
| AAGATCCCACTAGTACGAAA+TGG | + | chr5.3:76749033-76749052 | None:intergenic | 40.0% | |
| AAGTCGACATCAAGCAATCA+AGG | + | chr5.3:76747742-76747761 | None:intergenic | 40.0% | |
| AATGCTAATGTGTGCCCTAA+GGG | + | chr5.3:76748972-76748991 | None:intergenic | 40.0% | |
| ACAGAGAAACGAGGAAAAGT+GGG | + | chr5.3:76748591-76748610 | None:intergenic | 40.0% | |
| AGAAAAACGCCAGCTAATTG+AGG | + | chr5.3:76747586-76747605 | None:intergenic | 40.0% | |
| ATCTCACCATTGTGATCCAA+AGG | + | chr5.3:76748378-76748397 | None:intergenic | 40.0% | |
| ATGCAAGAAACAGAGAAACG+AGG | + | chr5.3:76748600-76748619 | None:intergenic | 40.0% | |
| ATTTGGAAGAGGGAGTTGAA+GGG | + | chr5.3:76749450-76749469 | None:intergenic | 40.0% | |
| CGTCAAGCAAAGGGAAAAAA+AGG | - | chr5.3:76749129-76749148 | MS.gene48066:intron | 40.0% | |
| CTTGAAAAGACTTCGAGGAA+AGG | - | chr5.3:76747894-76747913 | MS.gene48066:CDS | 40.0% | |
| GAGTAATGGTTATGAACCTG+TGG | - | chr5.3:76748738-76748757 | MS.gene48066:intron | 40.0% | |
| GTTCCTTAACATGTACCCTT+AGG | - | chr5.3:76748954-76748973 | MS.gene48066:intron | 40.0% | |
| TAAAGGATCCTTTGCAGATG+CGG | - | chr5.3:76747675-76747694 | MS.gene48066:intron | 40.0% | |
| TGAAGCCATTTACAGAACAG+AGG | + | chr5.3:76748676-76748695 | None:intergenic | 40.0% | |
| TGCATCTTGAAAAGACTTCG+AGG | - | chr5.3:76747889-76747908 | MS.gene48066:CDS | 40.0% | |
| TGGTTATGAACCTGTGGATT+TGG | - | chr5.3:76748744-76748763 | MS.gene48066:intron | 40.0% | |
| TTGCTAGTGGAAAAACGAAG+CGG | + | chr5.3:76748557-76748576 | None:intergenic | 40.0% | |
| ! | CTTCTGATCAAAAGTGTGTC+CGG | + | chr5.3:76746960-76746979 | None:intergenic | 40.0% |
| ! | GTTTCTCTGTTTCTTGCATG+TGG | - | chr5.3:76748601-76748620 | MS.gene48066:intron | 40.0% |
| ! | TCTTTGAAAAAGCGCAGCAA+GGG | - | chr5.3:76749503-76749522 | MS.gene48066:CDS | 40.0% |
| !! | AAAGGCACTTCAGCAAGTTA+AGG | + | chr5.3:76748360-76748379 | None:intergenic | 40.0% |
| !! | ATGGGTTCCGTTTTTGGATA+CGG | - | chr5.3:76746553-76746572 | MS.gene48066:CDS | 40.0% |
| !! | TTAACTTGCTGAAGTGCCTT+TGG | - | chr5.3:76748359-76748378 | MS.gene48066:intron | 40.0% |
| !!! | GCTTTAATGGGTTCCGTTTT+TGG | - | chr5.3:76746547-76746566 | MS.gene48066:CDS | 40.0% |
| AAAGGATCCTTTGCAGATGC+GGG | - | chr5.3:76747676-76747695 | MS.gene48066:intron | 45.0% | |
| AAATTGAAGTAGTCCGGGTC+TGG | - | chr5.3:76748419-76748438 | MS.gene48066:intron | 45.0% | |
| AATAACCTCGCCCACCAATA+AGG | + | chr5.3:76748244-76748263 | None:intergenic | 45.0% | |
| AGACTTCGAGGAAAGGATGA+TGG | - | chr5.3:76747901-76747920 | MS.gene48066:CDS | 45.0% | |
| ATAACCTCGCCCACCAATAA+GGG | + | chr5.3:76748243-76748262 | None:intergenic | 45.0% | |
| CATTTGGAAGAGGGAGTTGA+AGG | + | chr5.3:76749451-76749470 | None:intergenic | 45.0% | |
| GAAACGGATAAGACAAACGG+AGG | + | chr5.3:76746506-76746525 | None:intergenic | 45.0% | |
| GGCGAAACGGATAAGACAAA+CGG | + | chr5.3:76746509-76746528 | None:intergenic | 45.0% | |
| TGTCATCACCGTCAAGCAAA+GGG | - | chr5.3:76749120-76749139 | MS.gene48066:intron | 45.0% | |
| TGTTCATAGGCCAAATCCAC+AGG | + | chr5.3:76748757-76748776 | None:intergenic | 45.0% | |
| TTGTCATCACCGTCAAGCAA+AGG | - | chr5.3:76749119-76749138 | MS.gene48066:intron | 45.0% | |
| TTTGGAAGAGGGAGTTGAAG+GGG | + | chr5.3:76749449-76749468 | None:intergenic | 45.0% | |
| ! | AAGGCCTTATCCCACTTAGT+GGG | + | chr5.3:76747468-76747487 | None:intergenic | 45.0% |
| ! | GAAGTGCCTTTGGATCACAA+TGG | - | chr5.3:76748369-76748388 | MS.gene48066:intron | 45.0% |
| ! | GTCTTTGAAAAAGCGCAGCA+AGG | - | chr5.3:76749502-76749521 | MS.gene48066:CDS | 45.0% |
| ! | TCCTTAACAAGGGCACACAT+TGG | + | chr5.3:76748840-76748859 | None:intergenic | 45.0% |
| ! | TGCCCTAAGGGTACATGTTA+AGG | + | chr5.3:76748960-76748979 | None:intergenic | 45.0% |
| !! | GCTTGTAATGGGTGTGTTTC+AGG | - | chr5.3:76747625-76747644 | MS.gene48066:intron | 45.0% |
| !! | GGACTTGCTCTAAGTTTTCC+CGG | - | chr5.3:76748040-76748059 | MS.gene48066:CDS | 45.0% |
| AAACGAGGAAAAGTGGGAGG+AGG | + | chr5.3:76748585-76748604 | None:intergenic | 50.0% | |
| AAGGATCCTTTGCAGATGCG+GGG | - | chr5.3:76747677-76747696 | MS.gene48066:intron | 50.0% | |
| ACTGGAGATTCCACCAACAC+TGG | + | chr5.3:76748299-76748318 | None:intergenic | 50.0% | |
| ACTTAGTGGGGTAGGCTACA+TGG | + | chr5.3:76747455-76747474 | None:intergenic | 50.0% | |
| AGAATTGGGAACGGAGGAGT+CGG | + | chr5.3:76746455-76746474 | None:intergenic | 50.0% | |
| AGAGTCTACGCAAGATTGGG+AGG | + | chr5.3:76749085-76749104 | None:intergenic | 50.0% | |
| AGTCTACGCAAGATTGGGAG+GGG | + | chr5.3:76749083-76749102 | None:intergenic | 50.0% | |
| ATGTAGCCTACCCCACTAAG+TGG | - | chr5.3:76747454-76747473 | MS.gene48066:intron | 50.0% | |
| ATTCCACCAACACTGGATGG+TGG | + | chr5.3:76748292-76748311 | None:intergenic | 50.0% | |
| CTACCCCACTAAGTGGGATA+AGG | - | chr5.3:76747461-76747480 | MS.gene48066:intron | 50.0% | |
| CTTATCCCACTTAGTGGGGT+AGG | + | chr5.3:76747463-76747482 | None:intergenic | 50.0% | |
| GAGAAACGAGGAAAAGTGGG+AGG | + | chr5.3:76748588-76748607 | None:intergenic | 50.0% | |
| GAGATTCCACCAACACTGGA+TGG | + | chr5.3:76748295-76748314 | None:intergenic | 50.0% | |
| GAGTCTACGCAAGATTGGGA+GGG | + | chr5.3:76749084-76749103 | None:intergenic | 50.0% | |
| GATAAGACAAACGGAGGGAG+CGG | + | chr5.3:76746500-76746519 | None:intergenic | 50.0% | |
| GCCAATGTGTGCCCTTGTTA+AGG | - | chr5.3:76748836-76748855 | MS.gene48066:intron | 50.0% | |
| GGAATCTCCAGTTGAAGCCT+AGG | - | chr5.3:76748307-76748326 | MS.gene48066:intron | 50.0% | |
| GGAGGAGGTAGTATTGCTAG+TGG | + | chr5.3:76748570-76748589 | None:intergenic | 50.0% | |
| GTCATTAACGCTGGAGTAGC+TGG | - | chr5.3:76748007-76748026 | MS.gene48066:intron | 50.0% | |
| TCCTAGAATCAGGCGATCCT+AGG | + | chr5.3:76748327-76748346 | None:intergenic | 50.0% | |
| TGCCCATGTCCTGGAAAACA+GGG | - | chr5.3:76749390-76749409 | MS.gene48066:CDS | 50.0% | |
| TGGAATCCACCATCCAGTGT+TGG | - | chr5.3:76748283-76748302 | MS.gene48066:intron | 50.0% | |
| TGGAGTAGCTGGATGTTGCA+CGG | - | chr5.3:76748018-76748037 | MS.gene48066:intron | 50.0% | |
| TGTAGCCTACCCCACTAAGT+GGG | - | chr5.3:76747455-76747474 | MS.gene48066:intron | 50.0% | |
| TTGGAAGAGGGAGTTGAAGG+GGG | + | chr5.3:76749448-76749467 | None:intergenic | 50.0% | |
| ! | AATCCACCATCCAGTGTTGG+TGG | - | chr5.3:76748286-76748305 | MS.gene48066:intron | 50.0% |
| ! | AATGGGTGTGTTTCAGGTGC+TGG | - | chr5.3:76747631-76747650 | MS.gene48066:intron | 50.0% |
| ! | AGCCCTGTTTTCCAGGACAT+GGG | + | chr5.3:76749395-76749414 | None:intergenic | 50.0% |
| ! | AGGCCTTATCCCACTTAGTG+GGG | + | chr5.3:76747467-76747486 | None:intergenic | 50.0% |
| ! | AGTTGAAGGGGGAGTACAAG+GGG | + | chr5.3:76749437-76749456 | None:intergenic | 50.0% |
| ! | ATGGCGGTGTTGGGAGAATT+GGG | + | chr5.3:76746469-76746488 | None:intergenic | 50.0% |
| ! | CAAGGCCTTATCCCACTTAG+TGG | + | chr5.3:76747469-76747488 | None:intergenic | 50.0% |
| ! | GAGTTGAAGGGGGAGTACAA+GGG | + | chr5.3:76749438-76749457 | None:intergenic | 50.0% |
| ! | GGTGTTGGGAGAATTGGGAA+CGG | + | chr5.3:76746464-76746483 | None:intergenic | 50.0% |
| ! | TTGCAGGGTTGCCTCACTTT+TGG | - | chr5.3:76749314-76749333 | MS.gene48066:intron | 50.0% |
| !! | ACACTGGATGGTGGATTCCA+CGG | + | chr5.3:76748283-76748302 | None:intergenic | 50.0% |
| !! | TGCAGGGTTGCCTCACTTTT+GGG | - | chr5.3:76749315-76749334 | MS.gene48066:intron | 50.0% |
| AGAAGACCCCGCATCTGCAA+AGG | + | chr5.3:76747686-76747705 | None:intergenic | 55.0% | |
| AGATGCGGGGTCTTCTGCAA+AGG | - | chr5.3:76747690-76747709 | MS.gene48066:intron | 55.0% | |
| AGGCGATCCTAGGCTTCAAC+TGG | + | chr5.3:76748317-76748336 | None:intergenic | 55.0% | |
| CTGCCCATGTCCTGGAAAAC+AGG | - | chr5.3:76749389-76749408 | MS.gene48066:CDS | 55.0% | |
| GAGGAATCGTCGTCATGAGG+CGG | + | chr5.3:76746433-76746452 | None:intergenic | 55.0% | |
| GCCTAGGATCGCCTGATTCT+AGG | - | chr5.3:76748323-76748342 | MS.gene48066:intron | 55.0% | |
| GGAGTAGCTGGATGTTGCAC+GGG | - | chr5.3:76748019-76748038 | MS.gene48066:intron | 55.0% | |
| GTCTACGCAAGATTGGGAGG+GGG | + | chr5.3:76749082-76749101 | None:intergenic | 55.0% | |
| GTTGGGAGAATTGGGAACGG+AGG | + | chr5.3:76746461-76746480 | None:intergenic | 55.0% | |
| TCGGAGGAATCGTCGTCATG+AGG | + | chr5.3:76746436-76746455 | None:intergenic | 55.0% | |
| ! | CAGCCCTGTTTTCCAGGACA+TGG | + | chr5.3:76749396-76749415 | None:intergenic | 55.0% |
| ! | GATGGCGGTGTTGGGAGAAT+TGG | + | chr5.3:76746470-76746489 | None:intergenic | 55.0% |
| ! | GCACCACAAGCGCTTTTGCA+GGG | - | chr5.3:76749299-76749318 | MS.gene48066:intron | 55.0% |
| ! | GGAACCCATTAAAGCGCCAC+CGG | + | chr5.3:76746542-76746561 | None:intergenic | 55.0% |
| ! | GGAGTTGAAGGGGGAGTACA+AGG | + | chr5.3:76749439-76749458 | None:intergenic | 55.0% |
| ! | TAGTCCCTTATTGGTGGGCG+AGG | - | chr5.3:76748236-76748255 | MS.gene48066:CDS | 55.0% |
| ! | TGCACCACAAGCGCTTTTGC+AGG | - | chr5.3:76749298-76749317 | MS.gene48066:intron | 55.0% |
| !! | AGGCGGTGTTGTGATACCGT+CGG | + | chr5.3:76746416-76746435 | None:intergenic | 55.0% |
| !! | CAACCCTGCAAAAGCGCTTG+TGG | + | chr5.3:76749305-76749324 | None:intergenic | 55.0% |
| !! | GCAGGGTTGCCTCACTTTTG+GGG | - | chr5.3:76749316-76749335 | MS.gene48066:intron | 55.0% |
| AAGACAAACGGAGGGAGCGG+CGG | + | chr5.3:76746497-76746516 | None:intergenic | 60.0% | |
| AGGTAGCATCGCTGTCGCAC+AGG | + | chr5.3:76748511-76748530 | None:intergenic | 60.0% | |
| AGTGTGTCCGGTGTCCGACA+TGG | + | chr5.3:76746948-76746967 | None:intergenic | 60.0% | |
| ATCGCTGTCGCACAGGGAAG+AGG | + | chr5.3:76748504-76748523 | None:intergenic | 60.0% | |
| ATTGGGAACGGAGGAGTCGG+AGG | + | chr5.3:76746452-76746471 | None:intergenic | 60.0% | |
| CACTTGCACTGCCCATGTCC+TGG | - | chr5.3:76749381-76749400 | MS.gene48066:intron | 60.0% | |
| CGGCGGAATCAGTGGCGAAA+CGG | + | chr5.3:76746522-76746541 | None:intergenic | 60.0% | |
| GACATGGGCAGTGCAAGTGC+TGG | + | chr5.3:76749380-76749399 | None:intergenic | 60.0% | |
| GGTAGCATCGCTGTCGCACA+GGG | + | chr5.3:76748510-76748529 | None:intergenic | 60.0% | |
| GGTGTGTCCATGTCGGACAC+CGG | - | chr5.3:76746938-76746957 | MS.gene48066:intron | 60.0% | |
| TCCGCCGGTGGCGCTTTAAT+GGG | - | chr5.3:76746535-76746554 | MS.gene48066:CDS | 60.0% | |
| TGCTACCTCTCCTCCACCAG+CGG | - | chr5.3:76748523-76748542 | MS.gene48066:intron | 60.0% | |
| TTCCGCCGGTGGCGCTTTAA+TGG | - | chr5.3:76746534-76746553 | MS.gene48066:CDS | 60.0% | |
| ! | ACCCATTAAAGCGCCACCGG+CGG | + | chr5.3:76746539-76746558 | None:intergenic | 60.0% |
| ! | GTGCTGCAGCCCTGTTTTCC+AGG | + | chr5.3:76749402-76749421 | None:intergenic | 60.0% |
| ! | TGAAGGGGGAGTACAAGGGG+AGG | + | chr5.3:76749434-76749453 | None:intergenic | 60.0% |
| !! | CGTTTCGCCACTGATTCCGC+CGG | - | chr5.3:76746520-76746539 | MS.gene48066:CDS | 60.0% |
| !! | CTGGATGGTGGATTCCACGG+TGG | + | chr5.3:76748280-76748299 | None:intergenic | 60.0% |
| AGACAAACGGAGGGAGCGGC+GGG | + | chr5.3:76746496-76746515 | None:intergenic | 65.0% | |
| ! | ATGGCGACGGCGGATTCCGA+CGG | - | chr5.3:76746397-76746416 | MS.gene48066:CDS | 65.0% |
| ! | GCGGGAACGATGGCGGTGTT+GGG | + | chr5.3:76746478-76746497 | None:intergenic | 65.0% |
| !! | TTCGCCACTGATTCCGCCGG+TGG | - | chr5.3:76746523-76746542 | MS.gene48066:CDS | 65.0% |
| AGCGCCACCGGCGGAATCAG+TGG | + | chr5.3:76746530-76746549 | None:intergenic | 70.0% | |
| ! | GGCGGGAACGATGGCGGTGT+TGG | + | chr5.3:76746479-76746498 | None:intergenic | 70.0% |
| CGCAGCCGCTGGTGGAGGAG+AGG | + | chr5.3:76748531-76748550 | None:intergenic | 75.0% | |
| GGAGGGAGCGGCGGGAACGA+TGG | + | chr5.3:76746488-76746507 | None:intergenic | 75.0% | |
| GGGAGCGGCGGGAACGATGG+CGG | + | chr5.3:76746485-76746504 | None:intergenic | 75.0% | |
| ! | GGTGTCGCAGCCGCTGGTGG+AGG | + | chr5.3:76748536-76748555 | None:intergenic | 75.0% |
| !! | AGCGGTGTCGCAGCCGCTGG+TGG | + | chr5.3:76748539-76748558 | None:intergenic | 75.0% |
| !! | CGAAGCGGTGTCGCAGCCGC+TGG | + | chr5.3:76748542-76748561 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 76746397 | 76749547 | 76746397 | ID=MS.gene48066 |
| chr5.3 | mRNA | 76746397 | 76749547 | 76746397 | ID=MS.gene48066.t1;Parent=MS.gene48066 |
| chr5.3 | exon | 76749388 | 76749547 | 76749388 | ID=MS.gene48066.t1.exon1;Parent=MS.gene48066.t1 |
| chr5.3 | CDS | 76749388 | 76749547 | 76749388 | ID=cds.MS.gene48066.t1;Parent=MS.gene48066.t1 |
| chr5.3 | exon | 76748233 | 76748297 | 76748233 | ID=MS.gene48066.t1.exon2;Parent=MS.gene48066.t1 |
| chr5.3 | CDS | 76748233 | 76748297 | 76748233 | ID=cds.MS.gene48066.t1;Parent=MS.gene48066.t1 |
| chr5.3 | exon | 76748022 | 76748094 | 76748022 | ID=MS.gene48066.t1.exon3;Parent=MS.gene48066.t1 |
| chr5.3 | CDS | 76748022 | 76748094 | 76748022 | ID=cds.MS.gene48066.t1;Parent=MS.gene48066.t1 |
| chr5.3 | exon | 76747883 | 76747936 | 76747883 | ID=MS.gene48066.t1.exon4;Parent=MS.gene48066.t1 |
| chr5.3 | CDS | 76747883 | 76747936 | 76747883 | ID=cds.MS.gene48066.t1;Parent=MS.gene48066.t1 |
| chr5.3 | exon | 76746397 | 76746647 | 76746397 | ID=MS.gene48066.t1.exon5;Parent=MS.gene48066.t1 |
| chr5.3 | CDS | 76746397 | 76746647 | 76746397 | ID=cds.MS.gene48066.t1;Parent=MS.gene48066.t1 |
| Gene Sequence |
| Protein sequence |
