AlfalfaGEDB | MS.gene49262

M. sativa cultivar XinJiangDaYe / MS.gene49262

KEGG: -
GO: GO:0000145 GO:0005575 GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0032991 GO:0046903 GO:0051179 GO:0051234 GO:0099023 GO:0140352
PFAM: PF03081.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49262.t1	XP_003608835.1	97.9	655	12	1	25	677	39	693	0.00E+00	1234.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49262.t1	Q9LZD3	34.1	649	374	14	32	664	20	630	1.2e-97	359.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49262.t1	G7JLE3	97.9	655	12	1	25	677	39	693	0.0e+00	1234.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049182	MS.gene49262	0.804105	2.53E-49	-1.69E-46
MS.gene050379	MS.gene49262	0.810683	1.02E-50	-1.69E-46
MS.gene050945	MS.gene49262	0.824342	8.50E-54	-1.69E-46
MS.gene051960	MS.gene49262	0.801824	7.50E-49	-1.69E-46
MS.gene055886	MS.gene49262	0.812472	4.17E-51	-1.69E-46
MS.gene057148	MS.gene49262	-0.820643	6.15E-53	-1.69E-46
MS.gene057174	MS.gene49262	0.933999	7.95E-96	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49262.t1	MTR_4g103540	97.791	679	13	1	1	677	15	693	0.0	1362
MS.gene49262.t1	MTR_8g021330	40.510	627	322	15	82	676	9	616	1.71e-140	424
MS.gene49262.t1	MTR_7g013770	44.404	545	270	11	146	674	150	677	2.27e-139	423
MS.gene49262.t1	MTR_5g073450	33.886	664	391	11	17	665	4	634	8.80e-121	374
MS.gene49262.t1	MTR_3g025900	38.732	568	313	12	116	675	79	619	5.60e-120	371
MS.gene49262.t1	MTR_1g090620	32.738	672	392	12	17	664	6	641	9.34e-119	369
MS.gene49262.t1	MTR_1g057560	34.574	645	371	13	32	664	20	625	1.82e-116	363
MS.gene49262.t1	MTR_3g031130	34.545	660	378	14	17	665	4	620	2.70e-115	359
MS.gene49262.t1	MTR_6g033310	35.636	550	317	9	139	676	213	737	7.38e-106	338
MS.gene49262.t1	MTR_7g026630	36.531	542	306	13	144	671	137	654	7.66e-105	333

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene49262.t1	AT5G50380	57.625	682	242	10	20	676	24	683	0.0	735
MS.gene49262.t1	AT1G72470	40.510	627	324	12	82	676	23	632	8.58e-148	444
MS.gene49262.t1	AT3G14090	39.903	619	349	11	76	675	9	623	7.19e-140	423
MS.gene49262.t1	AT1G54090	45.275	455	233	8	232	674	170	620	5.50e-131	400
MS.gene49262.t1	AT3G29400	38.487	595	300	10	115	675	96	658	8.10e-120	372
MS.gene49262.t1	AT5G58430	34.071	678	354	15	18	665	5	619	6.88e-116	361
MS.gene49262.t1	AT5G52340	33.591	646	376	14	31	664	19	623	1.20e-115	360
MS.gene49262.t1	AT5G03540	33.487	651	375	13	32	664	20	630	6.89e-113	353
MS.gene49262.t1	AT5G03540	32.887	672	377	16	32	664	20	656	2.89e-108	342
MS.gene49262.t1	AT5G13150	36.891	534	308	10	147	669	134	649	1.36e-107	340

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Find 185 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCTGCTGCAATGCA+TGG	0.571711	8.2:+20708030	None:intergenic
AAAATCCTAAACAGCTTCTC+CGG	0.501012	8.2:+20708467	None:intergenic
AAATAAGTCTCTAGATCCTC+CGG	0.509666	8.2:+20707600	None:intergenic
AAATAGACTTCAGGATCATT+CGG	0.468898	8.2:+20709223	None:intergenic
AACAATATCTGTCGTCCTAG+AGG	0.484161	8.2:+20708107	None:intergenic
AAGAGGTGCAGAAGTTTGAG+TGG	0.490479	8.2:-20708694	MS.gene49262:CDS
AAGCAGTTGCCATTTGTAAG+AGG	0.461420	8.2:-20708493	MS.gene49262:CDS
AAGCTGTTAAGGTCGTTGTT+AGG	0.336199	8.2:-20708637	MS.gene49262:CDS
AAGGGTGTGCTTAGAGGACT+TGG	0.391145	8.2:-20708365	MS.gene49262:CDS
AATTGGGTTCGTAAGCGCCG+CGG	0.718269	8.2:-20707939	MS.gene49262:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATAGACTTCAGGATCATT+CGG	+	chr8.2:20707869-20707888	None:intergenic	30.0%
ACGATCCAATATAATCTTAC+CGG	+	chr8.2:20707966-20707985	None:intergenic	30.0%
ATATTATTGATCGGATGGTT+AGG	-	chr8.2:20708272-20708291	MS.gene49262:CDS	30.0%
CAAATACATCAAGTATGTAC+CGG	-	chr8.2:20709470-20709489	MS.gene49262:CDS	30.0%
GAAAGATATTATTGATCGGA+TGG	-	chr8.2:20708267-20708286	MS.gene49262:CDS	30.0%
GCGAATAAATATATCAGAGA+AGG	-	chr8.2:20709383-20709402	MS.gene49262:CDS	30.0%
TGTTTCAATGAAACAGCTAA+AGG	-	chr8.2:20708544-20708563	MS.gene49262:CDS	30.0%
AAAATCCTAAACAGCTTCTC+CGG	+	chr8.2:20708625-20708644	None:intergenic	35.0%
AAATAAGTCTCTAGATCCTC+CGG	+	chr8.2:20709492-20709511	None:intergenic	35.0%
AGAATTATCATCAAACCCAC+CGG	+	chr8.2:20708134-20708153	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.2	gene	20707539	20709572	20707539	ID=MS.gene49262
chr8.2	mRNA	20707539	20709572	20707539	ID=MS.gene49262.t1;Parent=MS.gene49262
chr8.2	exon	20707539	20709572	20707539	ID=MS.gene49262.t1.exon1;Parent=MS.gene49262.t1
chr8.2	CDS	20707539	20709572	20707539	ID=cds.MS.gene49262.t1;Parent=MS.gene49262.t1

Gene Sequence

>MS.gene49262

ATGGCCGCCACCACCACCAACCACGGCGGCGGCGGAGCCACCGGTGCCGGTGGAGACGATCGAGTTCTCGCTACAGCACAACAGATCCTCAAAAGCCTAAAAGCTCCCAAAGAAGATCGTGAAGACATGCTCTTAATCTTCTCCACCTTCGACAACCGTCTCTCCGGTATCACCGACCTTATCAACGGCGACGATTCCAAATCTTCCAAATCCGACGACGACGACGACGAAGACCTTGACCGATTCGAAGCTGCGGAGAAAGTCATACTCAATGATTCTTCGTTATCCACCGAGTCTTCTCGTCAATCAACTTCGCTTTTCGATCCTCCGAATGATCCTGAAGTCTATTTCAACGCTGTTGATGAGATTATTCAGTGGATGGAACACTTCACGATCTCGCCGCCGATTAATTCCGCTGGAAAAACCGGTAAGATTATATTGGATCGTGCTGATAACGCGATCCAAGTTGCCATGTCGAGGCTCGAGGATGAGCTTCGACATGTGTTGATTTGTAATACTGTTCCGCCGGATGCTGTTAGCCGGTGTAGTACTAATAGGAGGAGTTCGATGTCTTTCAGTTCGCAGGACGGTGCCGGTGGGTTTGATGATAATTCTGGGAGTTTTGGTGATGTGGGTGATCCTGGTTCTCATAGGTTTCATGAACGTGGTGTTAGTCTTGGTGATGATTTGTTTGTTGATTTGGTTCGTCCTGAATCAATTTTGAATTTGAAAGATATTATTGATCGGATGGTTAGGTCTGGATATGAGAGGGAGTGTTTGCAGGTTTATAGTAGCGTTCGTCGTGACGCGTTGGTTGAGTGTTTGGCAATTCTGGGAGTTGAGAAATTGAGTATTGAAGAGGTGCAGAAGTTTGAGTGGAAGAGTTTGGATGAGAGGATGAAGAATTGGGTGCAAGCTGTTAAGGTCGTTGTTAGGGTTTTGTTGAGTGGGGAGAAGAGGCTATGTGATAGTCTTTTCGGTGATCTGGAGGATGTGAAAGAGATGTGTTTCAATGAAACAGCTAAAGGTTGTGTTATGATGTTGTTGAATTTTGGCGAAGCAGTTGCCATTTGTAAGAGGTCGCCGGAGAAGCTGTTTAGGATTTTGGATATGTATGAGGTTCTGAGAGATGCTTTGCCTGAATTGGAGGATATGGTTACGGATGAGTTTGTGATTACTGAGGCGAAGGGTGTGCTTAGAGGACTTGGGGAGGCTGTGAAAGGGACGTTTGCTGAGTTTGAGAGTTGTATTCGGAATGAGACTTCCAGAAAGCCGGTTATAACTGGGGATGTTCATCCTTTGCCTCGTTATGTGATGAATTACCTGAAACTGCTTGCGGATTATAGCGATGCTATGGATTCGCTTTTGGAAATCAGTGAAGAGGCTCTTTATCACTTTAAAAATGATTTGGGTGGTGATGAGTCCCAGTTAGAAGCTTTGTCCCCTCTAGGACGACAGATATTGTTGTTGATGTCTGAACTTGAGCACAATCTTGAGGAAAAATCAAAACTTTACGAAGACCATGCATTGCAGCAGGTGTTTTTGATGAACAATCTGCATTACCTGGTGCGTAAAGTGAAGGACTCAGATCTTATAGAGGTTTTGGGGGATAATTGGGTTCGTAAGCGCCGCGGTCAGGTACGGCAGTATGCTACGGGGTACCTTAGAGCCTGTTGGAGCAAGGCCTTGGCTTGTTTGAGGGATGAAGGGGTTGGAGGGAGCTCTAATAATGCATCAAGGATGGCTTTGAAGGAGAGATTCAAGAATTTCAACGCGTGTTTTGAAGATATATACAGGGTTCAGACAGCTTGGAAGGTACCCGATGACCAGCTTCGTGAAGAGATGCGAATAAATATATCAGAGAAGGTGATACCTGCATACCGCTCGTTTATGGGGAGGTTTAGCGGTCAGCTGGAGGGAAGACATGCAGGCAAATACATCAAGTATGTACCGGAGGATCTAGAGACTTATTTATTAGATTTATTTGAAGGATCACCTGCTGTATTACATCACATAAGGAGAAAGAGTACATAG

Protein sequence

>MS.gene49262.t1

MAATTTNHGGGGATGAGGDDRVLATAQQILKSLKAPKEDREDMLLIFSTFDNRLSGITDLINGDDSKSSKSDDDDDEDLDRFEAAEKVILNDSSLSTESSRQSTSLFDPPNDPEVYFNAVDEIIQWMEHFTISPPINSAGKTGKIILDRADNAIQVAMSRLEDELRHVLICNTVPPDAVSRCSTNRRSSMSFSSQDGAGGFDDNSGSFGDVGDPGSHRFHERGVSLGDDLFVDLVRPESILNLKDIIDRMVRSGYERECLQVYSSVRRDALVECLAILGVEKLSIEEVQKFEWKSLDERMKNWVQAVKVVVRVLLSGEKRLCDSLFGDLEDVKEMCFNETAKGCVMMLLNFGEAVAICKRSPEKLFRILDMYEVLRDALPELEDMVTDEFVITEAKGVLRGLGEAVKGTFAEFESCIRNETSRKPVITGDVHPLPRYVMNYLKLLADYSDAMDSLLEISEEALYHFKNDLGGDESQLEALSPLGRQILLLMSELEHNLEEKSKLYEDHALQQVFLMNNLHYLVRKVKDSDLIEVLGDNWVRKRRGQVRQYATGYLRACWSKALACLRDEGVGGSSNNASRMALKERFKNFNACFEDIYRVQTAWKVPDDQLREEMRINISEKVIPAYRSFMGRFSGQLEGRHAGKYIKYVPEDLETYLLDLFEGSPAVLHHIRRKST