Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49466.t1 | XP_003610744.2 | 97.1 | 756 | 22 | 0 | 2 | 757 | 23 | 778 | 0.00E+00 | 1450.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49466.t1 | F4JIF5 | 42.5 | 779 | 294 | 27 | 2 | 754 | 21 | 671 | 9.9e-122 | 439.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49466.t1 | G7K3P9 | 97.1 | 756 | 22 | 0 | 2 | 757 | 23 | 778 | 0.0e+00 | 1450.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49466.t1 | TF | CPP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052308 | MS.gene49466 | 0.811488 | 6.83E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene49466 | 0.807944 | 3.95E-50 | -1.69E-46 |
| MS.gene054459 | MS.gene49466 | 0.802016 | 6.85E-49 | -1.69E-46 |
| MS.gene054662 | MS.gene49466 | 0.811454 | 6.94E-51 | -1.69E-46 |
| MS.gene055578 | MS.gene49466 | 0.823066 | 1.69E-53 | -1.69E-46 |
| MS.gene055957 | MS.gene49466 | 0.80088 | 1.17E-48 | -1.69E-46 |
| MS.gene056041 | MS.gene49466 | 0.823688 | 1.21E-53 | -1.69E-46 |
| MS.gene057367 | MS.gene49466 | 0.809274 | 2.05E-50 | -1.69E-46 |
| MS.gene057458 | MS.gene49466 | 0.813915 | 2.01E-51 | -1.69E-46 |
| MS.gene059553 | MS.gene49466 | 0.802429 | 5.63E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene49466 | 0.834727 | 2.54E-56 | -1.69E-46 |
| MS.gene061260 | MS.gene49466 | 0.810239 | 1.27E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene49466 | MS.gene21825 | PPI |
| MS.gene49466 | MS.gene001040 | PPI |
| MS.gene49466 | MS.gene024852 | PPI |
| MS.gene49466 | MS.gene49465 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49466.t1 | MTR_5g006530 | 96.962 | 757 | 23 | 0 | 1 | 757 | 22 | 778 | 0.0 | 1513 |
| MS.gene49466.t1 | MTR_5g006530 | 97.473 | 554 | 14 | 0 | 204 | 757 | 1 | 554 | 0.0 | 1117 |
| MS.gene49466.t1 | MTR_1g103230 | 31.905 | 677 | 290 | 19 | 1 | 613 | 15 | 584 | 1.66e-69 | 240 |
| MS.gene49466.t1 | MTR_1g012020 | 29.190 | 877 | 434 | 33 | 1 | 754 | 33 | 845 | 5.80e-68 | 241 |
| MS.gene49466.t1 | MTR_4g061370 | 90.625 | 96 | 9 | 0 | 130 | 225 | 272 | 367 | 2.10e-49 | 188 |
| MS.gene49466.t1 | MTR_6g087590 | 44.079 | 152 | 82 | 2 | 447 | 596 | 106 | 256 | 1.92e-30 | 127 |
| MS.gene49466.t1 | MTR_8g103320 | 41.447 | 152 | 83 | 2 | 450 | 596 | 61 | 211 | 1.29e-29 | 123 |
| MS.gene49466.t1 | MTR_3g110122 | 48.800 | 125 | 60 | 4 | 467 | 590 | 148 | 269 | 5.40e-27 | 117 |
| MS.gene49466.t1 | MTR_2g049305 | 47.321 | 112 | 49 | 2 | 427 | 532 | 28 | 135 | 5.18e-22 | 97.8 |
| MS.gene49466.t1 | MTR_1g103190 | 35.075 | 268 | 135 | 12 | 295 | 540 | 3 | 253 | 1.17e-19 | 89.7 |
| MS.gene49466.t1 | MTR_1g103180 | 58.333 | 60 | 25 | 0 | 455 | 514 | 161 | 220 | 3.78e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49466.t1 | AT3G22780 | 43.534 | 781 | 303 | 32 | 1 | 753 | 21 | 691 | 2.00e-157 | 473 |
| MS.gene49466.t1 | AT4G14770 | 44.487 | 780 | 279 | 31 | 1 | 754 | 1 | 652 | 6.88e-154 | 463 |
| MS.gene49466.t1 | AT4G14770 | 44.231 | 780 | 281 | 31 | 1 | 754 | 20 | 671 | 2.39e-152 | 459 |
| MS.gene49466.t1 | AT4G14770 | 44.344 | 778 | 279 | 30 | 3 | 754 | 2 | 651 | 4.82e-152 | 458 |
| MS.gene49466.t1 | AT3G22760 | 40.208 | 771 | 264 | 31 | 1 | 756 | 20 | 608 | 1.58e-130 | 401 |
| MS.gene49466.t1 | AT3G22760 | 43.932 | 585 | 209 | 24 | 186 | 756 | 6 | 485 | 1.94e-116 | 360 |
| MS.gene49466.t1 | AT3G04850 | 34.472 | 615 | 323 | 20 | 1 | 590 | 17 | 576 | 3.50e-79 | 267 |
| MS.gene49466.t1 | AT5G25790 | 46.923 | 130 | 68 | 1 | 467 | 596 | 95 | 223 | 5.76e-30 | 124 |
| MS.gene49466.t1 | AT5G25790 | 46.923 | 130 | 68 | 1 | 467 | 596 | 95 | 223 | 7.55e-30 | 124 |
| MS.gene49466.t1 | AT2G20110 | 35.526 | 228 | 124 | 5 | 380 | 590 | 20 | 241 | 1.24e-29 | 124 |
| MS.gene49466.t1 | AT5G25790 | 48.462 | 130 | 62 | 2 | 467 | 596 | 95 | 219 | 1.33e-29 | 123 |
| MS.gene49466.t1 | AT2G20110 | 35.526 | 228 | 124 | 5 | 380 | 590 | 20 | 241 | 1.64e-29 | 124 |
| MS.gene49466.t1 | AT2G20110 | 35.526 | 228 | 124 | 5 | 380 | 590 | 20 | 241 | 1.66e-29 | 124 |
| MS.gene49466.t1 | AT4G29000 | 45.385 | 130 | 70 | 1 | 467 | 596 | 132 | 260 | 3.75e-29 | 124 |
| MS.gene49466.t1 | AT3G16160 | 34.979 | 243 | 129 | 9 | 467 | 697 | 66 | 291 | 3.28e-23 | 102 |
Find 165 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCACTGGTTCTGGATATT+TGG | 0.157115 | 5.1:-1285213 | MS.gene49466:CDS |
| TCACCACCACGGAGAATTTC+TGG | 0.214113 | 5.1:+1285113 | None:intergenic |
| GATTGAGACCAAAGAGAATT+TGG | 0.224349 | 5.1:+1285170 | None:intergenic |
| GCAGATTTAACTGGCTTTAT+AGG | 0.232000 | 5.1:+1288693 | None:intergenic |
| TATCTTCTAACCCCAGTTTC+AGG | 0.233911 | 5.1:+1285958 | None:intergenic |
| AATTAACATATTAGCAGAAT+TGG | 0.258385 | 5.1:+1288027 | None:intergenic |
| CAAATTGAAAATTTGACTTC+TGG | 0.261230 | 5.1:-1286971 | MS.gene49466:CDS |
| CGCTTTCGCGTCTTAATTCC+AGG | 0.270053 | 5.1:-1288366 | MS.gene49466:CDS |
| AAGATTTACATGGTTGATTC+AGG | 0.271475 | 5.1:-1287899 | MS.gene49466:CDS |
| TGGCAATTCAAATGAGAAAA+TGG | 0.271811 | 5.1:-1287771 | MS.gene49466:CDS |
| CAACACCTTTACGGCTTTCC+AGG | 0.273435 | 5.1:-1285379 | MS.gene49466:intron |
| TTTGCCTTTGTGATCCTTTA+CGG | 0.280925 | 5.1:+1286994 | None:intergenic |
| TCAGCACTTCGGATGACTTT+AGG | 0.288928 | 5.1:+1285988 | None:intergenic |
| GCTGACTCTGTGCCTGAAAC+TGG | 0.291755 | 5.1:-1285970 | MS.gene49466:CDS |
| GTTACAACCCTCACTGGTTC+TGG | 0.305204 | 5.1:-1285221 | MS.gene49466:CDS |
| TTGCGAAACCAAATTCTCTT+TGG | 0.309179 | 5.1:-1285178 | MS.gene49466:CDS |
| TGTACAGGTTCTGCTTCTAT+AGG | 0.312813 | 5.1:-1285518 | MS.gene49466:intron |
| CCGAGAGATGCTGATGTTCT+TGG | 0.317181 | 5.1:+1286900 | None:intergenic |
| TCTTTAGCCTTTGATTCTTC+CGG | 0.320531 | 5.1:+1288445 | None:intergenic |
| GAAATATTGTGAATGCTATC+AGG | 0.323011 | 5.1:-1285789 | MS.gene49466:intron |
| TTTGAAGAACAGTATCTTCA+TGG | 0.328335 | 5.1:+1286052 | None:intergenic |
| ATTTCTGGCATTTCATCATC+TGG | 0.343435 | 5.1:+1285128 | None:intergenic |
| GTACAGGTTCTGCTTCTATA+GGG | 0.354552 | 5.1:-1285517 | MS.gene49466:intron |
| CCCTTCACATCTGCAGCTAA+TGG | 0.355774 | 5.1:+1285673 | None:intergenic |
| AGCATTCACAATATTTCTTT+AGG | 0.370111 | 5.1:+1285795 | None:intergenic |
| TCCTGGTACATTGTTGTAGC+AGG | 0.370487 | 5.1:+1287933 | None:intergenic |
| CTGGGGTCTCAACACCTTTA+CGG | 0.372102 | 5.1:-1285388 | MS.gene49466:CDS |
| TGATGAGGATAACACACTTT+TGG | 0.374598 | 5.1:-1288197 | MS.gene49466:CDS |
| AATATCATCTGAAAGAGAAT+TGG | 0.381101 | 5.1:-1286864 | MS.gene49466:CDS |
| TTCGCAAAGATGCATGTTGC+CGG | 0.388684 | 5.1:-1287047 | MS.gene49466:CDS |
| ATTAACATATTAGCAGAATT+GGG | 0.391197 | 5.1:+1288028 | None:intergenic |
| CTCTTCGCCTAACTGTGAAA+TGG | 0.395894 | 5.1:-1285039 | MS.gene49466:CDS |
| GTTGAGACCCCAGCAGAATC+AGG | 0.402631 | 5.1:+1285398 | None:intergenic |
| GTAATGTGAGCAGATTTAAC+TGG | 0.404452 | 5.1:+1288684 | None:intergenic |
| TGGCTTTCCCTTTGATGAAA+AGG | 0.412518 | 5.1:+1285256 | None:intergenic |
| CTGTCACACACCGTGGCATT+CGG | 0.418651 | 5.1:-1287213 | MS.gene49466:CDS |
| AATAAATTGTACTCAAATGA+AGG | 0.424880 | 5.1:-1288406 | MS.gene49466:CDS |
| GTGAAAGTTCAGACTGTGAT+TGG | 0.429225 | 5.1:-1288063 | MS.gene49466:CDS |
| GGCTTTCCCTTTGATGAAAA+GGG | 0.433636 | 5.1:+1285257 | None:intergenic |
| TTGTTGATATAGTTGAATAC+TGG | 0.434917 | 5.1:+1288723 | None:intergenic |
| CATCCCTCAATTTCTCCGAC+TGG | 0.435335 | 5.1:+1286635 | None:intergenic |
| TCTTCGCCTAACTGTGAAAT+GGG | 0.439819 | 5.1:-1285038 | MS.gene49466:CDS |
| GGTTATGATCCTACACTTTG+TGG | 0.443504 | 5.1:-1288220 | MS.gene49466:CDS |
| ACAAAATCGCTGAGTCGTAT+AGG | 0.443839 | 5.1:+1287959 | None:intergenic |
| TCAGTAGCCATGTAAGCTAT+AGG | 0.446368 | 5.1:+1286797 | None:intergenic |
| GCACAGGACAATCTTGCTAA+TGG | 0.451745 | 5.1:-1287806 | MS.gene49466:CDS |
| TCTGCTTCTATAGGGATAGA+AGG | 0.452212 | 5.1:-1285509 | MS.gene49466:CDS |
| AATTGGACCCATCCGACAAT+GGG | 0.452280 | 5.1:-1286847 | MS.gene49466:CDS |
| GAAGGGTGCAAGAACGCATT+TGG | 0.452291 | 5.1:-1285656 | MS.gene49466:CDS |
| GCAATGATGTAGAGCTGGTC+AGG | 0.456666 | 5.1:+1286936 | None:intergenic |
| GAAGATCATCCTGATTCTGC+TGG | 0.460122 | 5.1:-1285407 | MS.gene49466:CDS |
| AATCTTCTGATCATCATTCC+TGG | 0.460270 | 5.1:+1287916 | None:intergenic |
| CTGACTCTGTGCCTGAAACT+GGG | 0.462110 | 5.1:-1285969 | MS.gene49466:CDS |
| AGAGCCAGTCGGAGAAATTG+AGG | 0.468017 | 5.1:-1286639 | MS.gene49466:CDS |
| CAGTATAATTGTGGTAGTCC+TGG | 0.468942 | 5.1:-1288241 | MS.gene49466:CDS |
| AGCACTTTCATGCAATTCCC+TGG | 0.472085 | 5.1:+1288348 | None:intergenic |
| CATAGAACCTTGTTCCTGTC+AGG | 0.475825 | 5.1:-1286094 | MS.gene49466:CDS |
| AGATGCATGTTGCCGGGTAT+CGG | 0.479372 | 5.1:-1287040 | MS.gene49466:CDS |
| GCTAATGGTTCTTCGATGAC+TGG | 0.480583 | 5.1:-1287791 | MS.gene49466:CDS |
| CTTCATCTCCAAATGGCAAA+AGG | 0.482506 | 5.1:-1285064 | MS.gene49466:CDS |
| TAGCCATGTAAGCTATAGGC+TGG | 0.482786 | 5.1:+1286801 | None:intergenic |
| GAGGCTGAATTGCATCTTCA+AGG | 0.483131 | 5.1:-1288109 | MS.gene49466:CDS |
| CCCTTTGATGAAAAGGGCAT+CGG | 0.485976 | 5.1:+1285263 | None:intergenic |
| CTCCTAGTCGCAGAGGTGGC+AGG | 0.487950 | 5.1:-1285010 | MS.gene49466:CDS |
| ATCAAAACTTCATCTCCAAA+TGG | 0.504677 | 5.1:-1285071 | MS.gene49466:CDS |
| GTCCGTTGCGGCTACTAGCT+CGG | 0.508571 | 5.1:+1287838 | None:intergenic |
| GGTCTGATGCAGAAATCATC+AGG | 0.508813 | 5.1:-1287986 | MS.gene49466:CDS |
| TAGCCTTTGATTCTTCCGGC+TGG | 0.510192 | 5.1:+1288449 | None:intergenic |
| AGAACAGTATCTTCATGGAT+AGG | 0.511164 | 5.1:+1286057 | None:intergenic |
| CAAGAACGCATTTGGTAGAA+AGG | 0.511592 | 5.1:-1285648 | MS.gene49466:CDS |
| GAGTAGCAATGATGTAGAGC+TGG | 0.514316 | 5.1:+1286931 | None:intergenic |
| TTTGTTGAAGCATTCCTGAC+AGG | 0.514321 | 5.1:+1286080 | None:intergenic |
| TCCCCAGCCTATAGCTTACA+TGG | 0.518437 | 5.1:-1286804 | MS.gene49466:CDS |
| AAATGAGAAAATGGATAATG+AGG | 0.521298 | 5.1:-1287762 | MS.gene49466:intron |
| GGCTGAACCCCATTGTCGGA+TGG | 0.521823 | 5.1:+1286839 | None:intergenic |
| ATAAATTGTACTCAAATGAA+GGG | 0.524572 | 5.1:-1288405 | MS.gene49466:CDS |
| CCCTGCTACAACAATGTACC+AGG | 0.525552 | 5.1:-1287934 | MS.gene49466:CDS |
| GACGATCCCATTTCACAGTT+AGG | 0.526872 | 5.1:+1285032 | None:intergenic |
| GCTTCAGCGCGCCATAAAAG+AGG | 0.528280 | 5.1:-1285842 | MS.gene49466:CDS |
| ATCGGATGATGCATATGCTC+AGG | 0.530983 | 5.1:-1288155 | MS.gene49466:CDS |
| TGCGATCTTCCTTCGCACAC+TGG | 0.531010 | 5.1:+1287165 | None:intergenic |
| AAGATCATCCTGATTCTGCT+GGG | 0.531460 | 5.1:-1285406 | MS.gene49466:CDS |
| AGGGTTGTAACAAAAGATCT+TGG | 0.531631 | 5.1:+1285233 | None:intergenic |
| GAATGCACTTGCTACCGTAA+AGG | 0.534952 | 5.1:-1287008 | MS.gene49466:CDS |
| CCTGGTACATTGTTGTAGCA+GGG | 0.537895 | 5.1:+1287934 | None:intergenic |
| GAATTAAGACGCGAAAGCGT+AGG | 0.538425 | 5.1:+1288370 | None:intergenic |
| GCTGAACCCCATTGTCGGAT+GGG | 0.544431 | 5.1:+1286840 | None:intergenic |
| AGTAGGCTGAACCCCATTGT+CGG | 0.545258 | 5.1:+1286835 | None:intergenic |
| TAGGAATCTAGATTCCTTGA+GGG | 0.545296 | 5.1:+1288596 | None:intergenic |
| AACGCATTTGGTAGAAAGGA+TGG | 0.546612 | 5.1:-1285644 | MS.gene49466:intron |
| GCGCTGTCTTGACTTTGAGA+TGG | 0.547351 | 5.1:-1287188 | MS.gene49466:CDS |
| AGCCATGTAAGCTATAGGCT+GGG | 0.550019 | 5.1:+1286802 | None:intergenic |
| GCCTCATGTCACCTCCCTCA+AGG | 0.551599 | 5.1:-1288610 | MS.gene49466:CDS |
| TCGCAAAGATGCATGTTGCC+GGG | 0.554525 | 5.1:-1287046 | MS.gene49466:CDS |
| AACGGACACTGACCGTGCAC+AGG | 0.555108 | 5.1:-1287822 | MS.gene49466:CDS |
| AACTAGTCAGATCGATCGAA+AGG | 0.555727 | 5.1:-1288086 | MS.gene49466:CDS |
| TAAGGGTGATGTGTGAGAGA+AGG | 0.557637 | 5.1:+1284957 | None:intergenic |
| GCCATGTAAGCTATAGGCTG+GGG | 0.557913 | 5.1:+1286803 | None:intergenic |
| GAATTGGACCCATCCGACAA+TGG | 0.560509 | 5.1:-1286848 | MS.gene49466:CDS |
| AGCATATGCATCATCCGATA+CGG | 0.562944 | 5.1:+1288159 | None:intergenic |
| TCCATTAGCTGCAGATGTGA+AGG | 0.563119 | 5.1:-1285674 | MS.gene49466:CDS |
| TGACTCTGTGCCTGAAACTG+GGG | 0.566690 | 5.1:-1285968 | MS.gene49466:intron |
| GAGCCAGTCGGAGAAATTGA+GGG | 0.568531 | 5.1:-1286638 | MS.gene49466:CDS |
| TGAAAGTTCAGACTGTGATT+GGG | 0.569942 | 5.1:-1288062 | MS.gene49466:CDS |
| GTTGTAACAAAAGATCTTGG+TGG | 0.570269 | 5.1:+1285236 | None:intergenic |
| TCAAACCTGGAAAGCCGTAA+AGG | 0.570767 | 5.1:+1285374 | None:intergenic |
| TAACCAGCCGGAAGAATCAA+AGG | 0.570940 | 5.1:-1288452 | MS.gene49466:CDS |
| CTCGAGTTTATTACCTGCGT+AGG | 0.579058 | 5.1:+1288577 | None:intergenic |
| TGAGGCGACGCGAAAACAGA+CGG | 0.581467 | 5.1:+1288627 | None:intergenic |
| TCCTTGAGGGAGGTGACATG+AGG | 0.583987 | 5.1:+1288609 | None:intergenic |
| AGACTGTGGTGTACTAGAGT+TGG | 0.586929 | 5.1:+1287126 | None:intergenic |
| AGAAACTAGTGACAAGGGTG+TGG | 0.586951 | 5.1:-1285468 | MS.gene49466:CDS |
| TCACACACCGTGGCATTCGG+AGG | 0.587057 | 5.1:-1287210 | MS.gene49466:CDS |
| GCTTTCGCGTCTTAATTCCA+GGG | 0.588910 | 5.1:-1288365 | MS.gene49466:CDS |
| CAATTATACTGTAATGATTG+TGG | 0.589570 | 5.1:+1288253 | None:intergenic |
| ATTGTCTGGTGAAGCCGTAT+CGG | 0.592735 | 5.1:-1288173 | MS.gene49466:CDS |
| AAGCATTCCTGACAGGAACA+AGG | 0.596059 | 5.1:+1286087 | None:intergenic |
| AACTAGTGACAAGGGTGTGG+AGG | 0.596480 | 5.1:-1285465 | MS.gene49466:CDS |
| CCAAGAACATCAGCATCTCT+CGG | 0.597520 | 5.1:-1286900 | MS.gene49466:CDS |
| GAATTCATTATTTCAGACTG+TGG | 0.599589 | 5.1:+1287112 | None:intergenic |
| GCTGAGCAACTGATTTCAGT+AGG | 0.602495 | 5.1:-1288328 | MS.gene49466:CDS |
| CTGGTACATTGTTGTAGCAG+GGG | 0.602762 | 5.1:+1287935 | None:intergenic |
| TTCAAGTGTAAACCGATACC+CGG | 0.605302 | 5.1:+1287028 | None:intergenic |
| TGATGATCAGAAGATTTACA+TGG | 0.605691 | 5.1:-1287909 | MS.gene49466:CDS |
| TTGAGATGGCCAGTGTGCGA+AGG | 0.607118 | 5.1:-1287174 | MS.gene49466:CDS |
| TAGCAAGATTGTCCTGTGCA+CGG | 0.611369 | 5.1:+1287810 | None:intergenic |
| CTTTAGGAGCAAATGCAAGA+GGG | 0.612218 | 5.1:+1286004 | None:intergenic |
| ACTAGTCAGATCGATCGAAA+GGG | 0.612598 | 5.1:-1288085 | MS.gene49466:CDS |
| AGGAATCTAGATTCCTACGC+AGG | 0.613226 | 5.1:-1288590 | MS.gene49466:intron |
| CAAATATCCAGAACCAGTGA+GGG | 0.617109 | 5.1:+1285214 | None:intergenic |
| TCGTCTCCTAGTCGCAGAGG+TGG | 0.618263 | 5.1:-1285014 | MS.gene49466:CDS |
| TGGTACATTGTTGTAGCAGG+GGG | 0.619846 | 5.1:+1287936 | None:intergenic |
| ACTTTAGGAGCAAATGCAAG+AGG | 0.620252 | 5.1:+1286003 | None:intergenic |
| CCATTAGCTGCAGATGTGAA+GGG | 0.621617 | 5.1:-1285673 | MS.gene49466:CDS |
| TTCCGAGCTAGTAGCCGCAA+CGG | 0.624512 | 5.1:-1287840 | MS.gene49466:CDS |
| AGATCATCCTGATTCTGCTG+GGG | 0.627174 | 5.1:-1285405 | MS.gene49466:CDS |
| CCAAATATCCAGAACCAGTG+AGG | 0.627791 | 5.1:+1285213 | None:intergenic |
| TTCCTGCCACCTCTGCGACT+AGG | 0.628203 | 5.1:+1285008 | None:intergenic |
| GGCTGGGGACAATCTTCAGT+AGG | 0.630869 | 5.1:+1286818 | None:intergenic |
| TAAATTGTACTCAAATGAAG+GGG | 0.630996 | 5.1:-1288404 | MS.gene49466:CDS |
| GTAGGAATCTAGATTCCTTG+AGG | 0.640124 | 5.1:+1288595 | None:intergenic |
| CAATCATTACAGTATAATTG+TGG | 0.641974 | 5.1:-1288250 | MS.gene49466:CDS |
| AGAAACAGAAACTAGTGACA+AGG | 0.642503 | 5.1:-1285474 | MS.gene49466:CDS |
| CAGGCACAGAGTCAGCACTT+CGG | 0.643193 | 5.1:+1285977 | None:intergenic |
| TTTATCTAGACATAACCAGC+CGG | 0.647804 | 5.1:-1288464 | MS.gene49466:intron |
| TGCACGGTCAGTGTCCGTTG+CGG | 0.648114 | 5.1:+1287826 | None:intergenic |
| AGTTCAGACTGTGATTGGGA+TGG | 0.649288 | 5.1:-1288058 | MS.gene49466:CDS |
| GAAACAGAAACTAGTGACAA+GGG | 0.650767 | 5.1:-1285473 | MS.gene49466:CDS |
| TGTGTGAGAGAAGGAAACGA+TGG | 0.651131 | 5.1:+1284966 | None:intergenic |
| GAATCTAGATTCCTTGAGGG+AGG | 0.652274 | 5.1:+1288599 | None:intergenic |
| TCCTACACTTTGTGGTGATG+AGG | 0.652902 | 5.1:-1288212 | MS.gene49466:CDS |
| GATGATGCATATGCTCAGGA+AGG | 0.661427 | 5.1:-1288151 | MS.gene49466:CDS |
| GACAGCGCCTCCGAATGCCA+CGG | 0.667054 | 5.1:+1287203 | None:intergenic |
| CAAAGTGTAGGATCATAACC+AGG | 0.669535 | 5.1:+1288223 | None:intergenic |
| CTTGTTTCTGTCACACACCG+TGG | 0.670686 | 5.1:-1287220 | MS.gene49466:CDS |
| AGGCGTAAGTCAGAGCCAGT+CGG | 0.672763 | 5.1:-1286650 | MS.gene49466:CDS |
| TCCTCATCACCACAAAGTGT+AGG | 0.678275 | 5.1:+1288211 | None:intergenic |
| GGATCGTCTCCTAGTCGCAG+AGG | 0.678306 | 5.1:-1285017 | MS.gene49466:CDS |
| TTGTGTGACAGATTCAGTCG+AGG | 0.697669 | 5.1:-1288128 | MS.gene49466:CDS |
| ATTGGACCCATCCGACAATG+GGG | 0.707831 | 5.1:-1286846 | MS.gene49466:CDS |
| GGCGACGCGAAAACAGACGG+AGG | 0.713947 | 5.1:+1288630 | None:intergenic |
| ATGCCAGAAATTCTCCGTGG+TGG | 0.726252 | 5.1:-1285116 | MS.gene49466:CDS |
| TAGGAGAGCTATCACCACCA+CGG | 0.736061 | 5.1:+1285102 | None:intergenic |
| GCTACCGTAAAGGATCACAA+AGG | 0.764621 | 5.1:-1286998 | MS.gene49466:CDS |
| GAAATGCCAGAAATTCTCCG+TGG | 0.824692 | 5.1:-1285119 | MS.gene49466:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGCTTATATAATATAATA+GGG | + | chr5.1:1286189-1286208 | None:intergenic | 10.0% |
| !! | ATAACTGAAAAAGAATAATA+TGG | + | chr5.1:1287548-1287567 | None:intergenic | 15.0% |
| !! | GTATGCTTATATAATATAAT+AGG | + | chr5.1:1286190-1286209 | None:intergenic | 15.0% |
| !! | GTCTAGATAAATAAATAAAT+TGG | + | chr5.1:1285218-1285237 | None:intergenic | 15.0% |
| !! | GTTATAATATGAATTACTTA+TGG | - | chr5.1:1287963-1287982 | MS.gene49466:CDS | 15.0% |
| !! | AATAAATTGTACTCAAATGA+AGG | - | chr5.1:1285285-1285304 | MS.gene49466:intron | 20.0% |
| !! | AATTAACATATTAGCAGAAT+TGG | + | chr5.1:1285667-1285686 | None:intergenic | 20.0% |
| !! | ACAAAAATTGATAAAAGGAA+TGG | + | chr5.1:1288156-1288175 | None:intergenic | 20.0% |
| !! | ATAAAAAGAAATCAATGAGA+TGG | + | chr5.1:1286995-1287014 | None:intergenic | 20.0% |
| !! | ATAAATTGTACTCAAATGAA+GGG | - | chr5.1:1285286-1285305 | MS.gene49466:intron | 20.0% |
| !! | ATTAACATATTAGCAGAATT+GGG | + | chr5.1:1285666-1285685 | None:intergenic | 20.0% |
| !! | GATCAATTAAACATAGAAAA+TGG | + | chr5.1:1287277-1287296 | None:intergenic | 20.0% |
| !! | TATTATACTTATACTAAGCT+TGG | - | chr5.1:1287012-1287031 | MS.gene49466:CDS | 20.0% |
| !!! | AAATTGGTAATCATTAGAAA+TGG | + | chr5.1:1285202-1285221 | None:intergenic | 20.0% |
| !!! | CATAACTTATTTAGTTTTCA+AGG | + | chr5.1:1287207-1287226 | None:intergenic | 20.0% |
| !!! | TAAGACAAATTTAAAGCTAA+TGG | + | chr5.1:1288124-1288143 | None:intergenic | 20.0% |
| !!! | TATAAGCATACTTTTTGTTA+TGG | - | chr5.1:1286199-1286218 | MS.gene49466:intron | 20.0% |
| !!! | TGTTTAATTGATCCTTTTTA+CGG | - | chr5.1:1287284-1287303 | MS.gene49466:intron | 20.0% |
| ! | AAATGAGAAAATGGATAATG+AGG | - | chr5.1:1285929-1285948 | MS.gene49466:intron | 25.0% |
| ! | AACGAAAAACAGATGAAAAA+AGG | + | chr5.1:1287137-1287156 | None:intergenic | 25.0% |
| ! | AACTAAGATCAATCAATAAC+GGG | + | chr5.1:1288388-1288407 | None:intergenic | 25.0% |
| ! | AAGGAAATTAATCAACTGAT+TGG | + | chr5.1:1287473-1287492 | None:intergenic | 25.0% |
| ! | AATATCATCTGAAAGAGAAT+TGG | - | chr5.1:1286827-1286846 | MS.gene49466:CDS | 25.0% |
| ! | ACGAAAAACAGATGAAAAAA+GGG | + | chr5.1:1287136-1287155 | None:intergenic | 25.0% |
| ! | AGCATTCACAATATTTCTTT+AGG | + | chr5.1:1287899-1287918 | None:intergenic | 25.0% |
| ! | AGGAAATTAATCAACTGATT+GGG | + | chr5.1:1287472-1287491 | None:intergenic | 25.0% |
| ! | CAATCATTACAGTATAATTG+TGG | - | chr5.1:1285441-1285460 | MS.gene49466:CDS | 25.0% |
| ! | CAATTATACTGTAATGATTG+TGG | + | chr5.1:1285441-1285460 | None:intergenic | 25.0% |
| ! | CATATTATAACTGAAACTTG+AGG | + | chr5.1:1287954-1287973 | None:intergenic | 25.0% |
| ! | CCTGTACAAAAATTGATAAA+AGG | + | chr5.1:1288161-1288180 | None:intergenic | 25.0% |
| ! | GAACTAAGATCAATCAATAA+CGG | + | chr5.1:1288389-1288408 | None:intergenic | 25.0% |
| ! | GTCATTTAAATTCTACAGAA+TGG | + | chr5.1:1287234-1287253 | None:intergenic | 25.0% |
| ! | TAAATTGTACTCAAATGAAG+GGG | - | chr5.1:1285287-1285306 | MS.gene49466:intron | 25.0% |
| ! | TCAGTTGATTAATTTCCTTA+AGG | - | chr5.1:1287474-1287493 | MS.gene49466:intron | 25.0% |
| ! | TTGTTGATATAGTTGAATAC+TGG | + | chr5.1:1284971-1284990 | None:intergenic | 25.0% |
| !! | CAAATTGAAAATTTGACTTC+TGG | - | chr5.1:1286720-1286739 | MS.gene49466:intron | 25.0% |
| !! | CCTTTTATCAATTTTTGTAC+AGG | - | chr5.1:1288158-1288177 | MS.gene49466:CDS | 25.0% |
| !! | GTTTAATTGATCCTTTTTAC+GGG | - | chr5.1:1287285-1287304 | MS.gene49466:intron | 25.0% |
| !! | TATGGTAGTTTTCTTTTGAA+GGG | - | chr5.1:1287981-1288000 | MS.gene49466:CDS | 25.0% |
| !! | TTATGGTAGTTTTCTTTTGA+AGG | - | chr5.1:1287980-1287999 | MS.gene49466:CDS | 25.0% |
| !! | TTCACTTACCTTTTCTTTTT+GGG | + | chr5.1:1286939-1286958 | None:intergenic | 25.0% |
| !!! | ATGGCATTTTGTTTTCTTTT+GGG | - | chr5.1:1286351-1286370 | MS.gene49466:intron | 25.0% |
| !!! | TATGGCATTTTGTTTTCTTT+TGG | - | chr5.1:1286350-1286369 | MS.gene49466:intron | 25.0% |
| !!! | TTCATCTGTTTTTCGTTTTT+GGG | - | chr5.1:1287140-1287159 | MS.gene49466:CDS | 25.0% |
| !!! | TTTCATCTGTTTTTCGTTTT+TGG | - | chr5.1:1287139-1287158 | MS.gene49466:CDS | 25.0% |
| AACTTGAGGTAAACATGATA+TGG | + | chr5.1:1287940-1287959 | None:intergenic | 30.0% | |
| AAGTGTGTTGTAATGTTGTA+TGG | - | chr5.1:1286332-1286351 | MS.gene49466:intron | 30.0% | |
| AGAAAATGGATAATGAGGTA+AGG | - | chr5.1:1285934-1285953 | MS.gene49466:intron | 30.0% | |
| AGCTGACAAACAAAACATTT+GGG | + | chr5.1:1288345-1288364 | None:intergenic | 30.0% | |
| ATCAAAACTTCATCTCCAAA+TGG | - | chr5.1:1288620-1288639 | MS.gene49466:CDS | 30.0% | |
| GAAATATTGTGAATGCTATC+AGG | - | chr5.1:1287902-1287921 | MS.gene49466:CDS | 30.0% | |
| GAATTCATTATTTCAGACTG+TGG | + | chr5.1:1286582-1286601 | None:intergenic | 30.0% | |
| GTTCTGTTACAATCATTTCT+AGG | - | chr5.1:1286031-1286050 | MS.gene49466:CDS | 30.0% | |
| TAGCTGACAAACAAAACATT+TGG | + | chr5.1:1288346-1288365 | None:intergenic | 30.0% | |
| TCATGGAAAAACACAATTAC+AGG | + | chr5.1:1286071-1286090 | None:intergenic | 30.0% | |
| TGATGATCAGAAGATTTACA+TGG | - | chr5.1:1285782-1285801 | MS.gene49466:intron | 30.0% | |
| TGGCAATTCAAATGAGAAAA+TGG | - | chr5.1:1285920-1285939 | MS.gene49466:intron | 30.0% | |
| TTTGAAGAACAGTATCTTCA+TGG | + | chr5.1:1287642-1287661 | None:intergenic | 30.0% | |
| ! | AAGATTTACATGGTTGATTC+AGG | - | chr5.1:1285792-1285811 | MS.gene49466:CDS | 30.0% |
| ! | AATTGAAGCAGAAGCTTTTA+AGG | - | chr5.1:1285683-1285702 | MS.gene49466:CDS | 30.0% |
| ! | ATTGAAGCAGAAGCTTTTAA+GGG | - | chr5.1:1285684-1285703 | MS.gene49466:CDS | 30.0% |
| ! | CCAAACAGAAGCATAATTTA+GGG | + | chr5.1:1286312-1286331 | None:intergenic | 30.0% |
| ! | CTTCACTTACCTTTTCTTTT+TGG | + | chr5.1:1286940-1286959 | None:intergenic | 30.0% |
| ! | TCACTTACCTTTTCTTTTTG+GGG | + | chr5.1:1286938-1286957 | None:intergenic | 30.0% |
| ! | TCCAAACAGAAGCATAATTT+AGG | + | chr5.1:1286313-1286332 | None:intergenic | 30.0% |
| !!! | TGGCATTTTGTTTTCTTTTG+GGG | - | chr5.1:1286352-1286371 | MS.gene49466:intron | 30.0% |
| AAACATTTGGGTATCAAACC+TGG | + | chr5.1:1288333-1288352 | None:intergenic | 35.0% | |
| AACCTGGCTGAAAAAAACTT+TGG | + | chr5.1:1287420-1287439 | None:intergenic | 35.0% | |
| AATCTTCTGATCATCATTCC+TGG | + | chr5.1:1285778-1285797 | None:intergenic | 35.0% | |
| AGAAACAGAAACTAGTGACA+AGG | - | chr5.1:1288217-1288236 | MS.gene49466:CDS | 35.0% | |
| AGAACAGTATCTTCATGGAT+AGG | + | chr5.1:1287637-1287656 | None:intergenic | 35.0% | |
| AGGGTTGTAACAAAAGATCT+TGG | + | chr5.1:1288461-1288480 | None:intergenic | 35.0% | |
| ATAATATGCAGCCCGTAAAA+AGG | + | chr5.1:1287299-1287318 | None:intergenic | 35.0% | |
| ATCCCAAATGCATGATTTCT+AGG | - | chr5.1:1286095-1286114 | MS.gene49466:CDS | 35.0% | |
| ATGTAGTTGTATGTTTCCCT+GGG | - | chr5.1:1286000-1286019 | MS.gene49466:CDS | 35.0% | |
| CAATGCTGCATATAACCTTA+AGG | + | chr5.1:1287492-1287511 | None:intergenic | 35.0% | |
| CCCTAAATTATGCTTCTGTT+TGG | - | chr5.1:1286309-1286328 | MS.gene49466:intron | 35.0% | |
| GAAACAGAAACTAGTGACAA+GGG | - | chr5.1:1288218-1288237 | MS.gene49466:CDS | 35.0% | |
| GAGGTAAACATGATATGGTA+AGG | + | chr5.1:1287935-1287954 | None:intergenic | 35.0% | |
| GATTGAGACCAAAGAGAATT+TGG | + | chr5.1:1288524-1288543 | None:intergenic | 35.0% | |
| GCTAGGACAAGAAAAACTAA+TGG | + | chr5.1:1287331-1287350 | None:intergenic | 35.0% | |
| GGTTAATTTCAGTACCAGTA+TGG | + | chr5.1:1287527-1287546 | None:intergenic | 35.0% | |
| GTAATGTGAGCAGATTTAAC+TGG | + | chr5.1:1285010-1285029 | None:intergenic | 35.0% | |
| GTTGTAACAAAAGATCTTGG+TGG | + | chr5.1:1288458-1288477 | None:intergenic | 35.0% | |
| TAGGAATCTAGATTCCTTGA+GGG | + | chr5.1:1285098-1285117 | None:intergenic | 35.0% | |
| TATACTAAGCTTGGATATGC+AGG | - | chr5.1:1287021-1287040 | MS.gene49466:CDS | 35.0% | |
| TGAAAGTTCAGACTGTGATT+GGG | - | chr5.1:1285629-1285648 | MS.gene49466:intron | 35.0% | |
| TGCCTAGAAATCATGCATTT+GGG | + | chr5.1:1286100-1286119 | None:intergenic | 35.0% | |
| TTGCCTAGAAATCATGCATT+TGG | + | chr5.1:1286101-1286120 | None:intergenic | 35.0% | |
| TTGCGAAACCAAATTCTCTT+TGG | - | chr5.1:1288513-1288532 | MS.gene49466:intron | 35.0% | |
| TTTATCTAGACATAACCAGC+CGG | - | chr5.1:1285227-1285246 | MS.gene49466:CDS | 35.0% | |
| TTTGCCTTTGTGATCCTTTA+CGG | + | chr5.1:1286700-1286719 | None:intergenic | 35.0% | |
| ! | AATTTGCGTTACGTTTTGCA+GGG | + | chr5.1:1286626-1286645 | None:intergenic | 35.0% |
| ! | ACTGTGATTTGTAGTCAATC+AGG | - | chr5.1:1286266-1286285 | MS.gene49466:intron | 35.0% |
| ! | ATGCATTTGGGATAAACTCA+TGG | + | chr5.1:1286088-1286107 | None:intergenic | 35.0% |
| ! | CTGTGATTTGTAGTCAATCA+GGG | - | chr5.1:1286267-1286286 | MS.gene49466:intron | 35.0% |
| ! | TCTTTAGCCTTTGATTCTTC+CGG | + | chr5.1:1285249-1285268 | None:intergenic | 35.0% |
| ! | TGATGAGGATAACACACTTT+TGG | - | chr5.1:1285494-1285513 | MS.gene49466:CDS | 35.0% |
| ! | TTGATCTTAGTTCTTGCAAC+AGG | - | chr5.1:1288396-1288415 | MS.gene49466:CDS | 35.0% |
| !! | ATTTCTGGCATTTCATCATC+TGG | + | chr5.1:1288566-1288585 | None:intergenic | 35.0% |
| !! | GAAGTTTTGATGCATGCAAT+AGG | + | chr5.1:1288611-1288630 | None:intergenic | 35.0% |
| !! | GCAGATTTAACTGGCTTTAT+AGG | + | chr5.1:1285001-1285020 | None:intergenic | 35.0% |
| !! | GGAATTTTCAAGCATAAAGC+AGG | + | chr5.1:1286974-1286993 | None:intergenic | 35.0% |
| !!! | AACACACTTTTGGAATTGTC+TGG | - | chr5.1:1285504-1285523 | MS.gene49466:CDS | 35.0% |
| !!! | TTTCAGCCAGGTTTTTTTAC+CGG | - | chr5.1:1287427-1287446 | MS.gene49466:intron | 35.0% |
| AACAGAACTCTCTAAACCCA+GGG | + | chr5.1:1286019-1286038 | None:intergenic | 40.0% | |
| AACGCATTTGGTAGAAAGGA+TGG | - | chr5.1:1288047-1288066 | MS.gene49466:CDS | 40.0% | |
| AACTAGTCAGATCGATCGAA+AGG | - | chr5.1:1285605-1285624 | MS.gene49466:intron | 40.0% | |
| AAGATCATCCTGATTCTGCT+GGG | - | chr5.1:1288285-1288304 | MS.gene49466:CDS | 40.0% | |
| ACAAAATCGCTGAGTCGTAT+AGG | + | chr5.1:1285735-1285754 | None:intergenic | 40.0% | |
| ACTAGTCAGATCGATCGAAA+GGG | - | chr5.1:1285606-1285625 | MS.gene49466:intron | 40.0% | |
| AGAACAGCCCCAAAAAGAAA+AGG | - | chr5.1:1286928-1286947 | MS.gene49466:CDS | 40.0% | |
| AGCATATGCATCATCCGATA+CGG | + | chr5.1:1285535-1285554 | None:intergenic | 40.0% | |
| CAAAGTGTAGGATCATAACC+AGG | + | chr5.1:1285471-1285490 | None:intergenic | 40.0% | |
| CAAATATCCAGAACCAGTGA+GGG | + | chr5.1:1288480-1288499 | None:intergenic | 40.0% | |
| CAAGAACGCATTTGGTAGAA+AGG | - | chr5.1:1288043-1288062 | MS.gene49466:CDS | 40.0% | |
| CAGTATAATTGTGGTAGTCC+TGG | - | chr5.1:1285450-1285469 | MS.gene49466:CDS | 40.0% | |
| CATGTAGTTGTATGTTTCCC+TGG | - | chr5.1:1285999-1286018 | MS.gene49466:CDS | 40.0% | |
| CTCAAGTGGTTAATGAACTC+CGG | + | chr5.1:1287449-1287468 | None:intergenic | 40.0% | |
| CTTCATCTCCAAATGGCAAA+AGG | - | chr5.1:1288627-1288646 | MS.gene49466:CDS | 40.0% | |
| GGACCTAGTAATCCAAACTT+TGG | - | chr5.1:1287372-1287391 | MS.gene49466:intron | 40.0% | |
| GGCTTTCCCTTTGATGAAAA+GGG | + | chr5.1:1288437-1288456 | None:intergenic | 40.0% | |
| GGTTATGATCCTACACTTTG+TGG | - | chr5.1:1285471-1285490 | MS.gene49466:CDS | 40.0% | |
| GTACAGGTTCTGCTTCTATA+GGG | - | chr5.1:1288174-1288193 | MS.gene49466:CDS | 40.0% | |
| GTAGGAATCTAGATTCCTTG+AGG | + | chr5.1:1285099-1285118 | None:intergenic | 40.0% | |
| GTGAAAGTTCAGACTGTGAT+TGG | - | chr5.1:1285628-1285647 | MS.gene49466:intron | 40.0% | |
| TAACAGAACTCTCTAAACCC+AGG | + | chr5.1:1286020-1286039 | None:intergenic | 40.0% | |
| TACCATGGTCTGCAATGTAA+GGG | + | chr5.1:1288081-1288100 | None:intergenic | 40.0% | |
| TAGGCAATGAGTATGAGTAC+AGG | - | chr5.1:1286114-1286133 | MS.gene49466:CDS | 40.0% | |
| TATCTTCTAACCCCAGTTTC+AGG | + | chr5.1:1287736-1287755 | None:intergenic | 40.0% | |
| TCAGTAGCCATGTAAGCTAT+AGG | + | chr5.1:1286897-1286916 | None:intergenic | 40.0% | |
| TCTGCTTCTATAGGGATAGA+AGG | - | chr5.1:1288182-1288201 | MS.gene49466:CDS | 40.0% | |
| TCTTCGCCTAACTGTGAAAT+GGG | - | chr5.1:1288653-1288672 | MS.gene49466:CDS | 40.0% | |
| TGAACTCCGGTAAAAAAACC+TGG | + | chr5.1:1287436-1287455 | None:intergenic | 40.0% | |
| TGACTTGAAGATGACCATAC+TGG | - | chr5.1:1287510-1287529 | MS.gene49466:intron | 40.0% | |
| TGGCCAAAGTTTGGATTACT+AGG | + | chr5.1:1287378-1287397 | None:intergenic | 40.0% | |
| TGGCTTTCCCTTTGATGAAA+AGG | + | chr5.1:1288438-1288457 | None:intergenic | 40.0% | |
| TGTACAGGTTCTGCTTCTAT+AGG | - | chr5.1:1288173-1288192 | MS.gene49466:CDS | 40.0% | |
| TTAAAGCTAATGGCCCTGAT+TGG | + | chr5.1:1288114-1288133 | None:intergenic | 40.0% | |
| TTCAAGTGTAAACCGATACC+CGG | + | chr5.1:1286666-1286685 | None:intergenic | 40.0% | |
| ! | ACTTTAGGAGCAAATGCAAG+AGG | + | chr5.1:1287691-1287710 | None:intergenic | 40.0% |
| ! | AGAGTACAAGACTGGTTGAA+GGG | + | chr5.1:1287173-1287192 | None:intergenic | 40.0% |
| ! | CTTTAGGAGCAAATGCAAGA+GGG | + | chr5.1:1287690-1287709 | None:intergenic | 40.0% |
| ! | GAAGAGATCCTTTTGCCATT+TGG | + | chr5.1:1288638-1288657 | None:intergenic | 40.0% |
| ! | GAATTTGCGTTACGTTTTGC+AGG | + | chr5.1:1286627-1286646 | None:intergenic | 40.0% |
| ! | GATACAAGAGAGTACAAGAC+TGG | + | chr5.1:1287181-1287200 | None:intergenic | 40.0% |
| ! | TATTGTGAGTGTTTTGCTGC+TGG | - | chr5.1:1287565-1287584 | MS.gene49466:intron | 40.0% |
| ! | TCTTTTGTTACAACCCTCAC+TGG | - | chr5.1:1288464-1288483 | MS.gene49466:intron | 40.0% |
| ! | TGCAGTTGCATCCTCTTTTA+TGG | + | chr5.1:1287863-1287882 | None:intergenic | 40.0% |
| ! | TTTGTTGAAGCATTCCTGAC+AGG | + | chr5.1:1287614-1287633 | None:intergenic | 40.0% |
| !! | GGTAGTTTTCTTTTGAAGGG+TGG | - | chr5.1:1287984-1288003 | MS.gene49466:CDS | 40.0% |
| !! | TTTCTTTTGAAGGGTGGTGT+TGG | - | chr5.1:1287990-1288009 | MS.gene49466:CDS | 40.0% |
| !! | TTTTTCTTGTCCTAGCCTTC+CGG | - | chr5.1:1287335-1287354 | MS.gene49466:intron | 40.0% |
| !!! | CTGAAGCTGGAGTTTTGTTT+GGG | + | chr5.1:1287836-1287855 | None:intergenic | 40.0% |
| AAGCATTCCTGACAGGAACA+AGG | + | chr5.1:1287607-1287626 | None:intergenic | 45.0% | |
| AATTGGACCCATCCGACAAT+GGG | - | chr5.1:1286844-1286863 | MS.gene49466:CDS | 45.0% | |
| AGAAACTAGTGACAAGGGTG+TGG | - | chr5.1:1288223-1288242 | MS.gene49466:CDS | 45.0% | |
| AGACTGTGGTGTACTAGAGT+TGG | + | chr5.1:1286568-1286587 | None:intergenic | 45.0% | |
| AGATCATCCTGATTCTGCTG+GGG | - | chr5.1:1288286-1288305 | MS.gene49466:CDS | 45.0% | |
| AGCACTTTCATGCAATTCCC+TGG | + | chr5.1:1285346-1285365 | None:intergenic | 45.0% | |
| AGCCATGTAAGCTATAGGCT+GGG | + | chr5.1:1286892-1286911 | None:intergenic | 45.0% | |
| AGGAATCTAGATTCCTACGC+AGG | - | chr5.1:1285101-1285120 | MS.gene49466:CDS | 45.0% | |
| AGTTCAGACTGTGATTGGGA+TGG | - | chr5.1:1285633-1285652 | MS.gene49466:intron | 45.0% | |
| ATCAACTGATTGGGCTCAAG+TGG | + | chr5.1:1287463-1287482 | None:intergenic | 45.0% | |
| ATCGGATGATGCATATGCTC+AGG | - | chr5.1:1285536-1285555 | MS.gene49466:intron | 45.0% | |
| ATTGTCTGGTGAAGCCGTAT+CGG | - | chr5.1:1285518-1285537 | MS.gene49466:intron | 45.0% | |
| CATAGAACCTTGTTCCTGTC+AGG | - | chr5.1:1287597-1287616 | MS.gene49466:intron | 45.0% | |
| CCAAATATCCAGAACCAGTG+AGG | + | chr5.1:1288481-1288500 | None:intergenic | 45.0% | |
| CCAAGAACATCAGCATCTCT+CGG | - | chr5.1:1286791-1286810 | MS.gene49466:CDS | 45.0% | |
| CCATTAGCTGCAGATGTGAA+GGG | - | chr5.1:1288018-1288037 | MS.gene49466:CDS | 45.0% | |
| CCTGGTACATTGTTGTAGCA+GGG | + | chr5.1:1285760-1285779 | None:intergenic | 45.0% | |
| CTACCATGGTCTGCAATGTA+AGG | + | chr5.1:1288082-1288101 | None:intergenic | 45.0% | |
| CTCGAGTTTATTACCTGCGT+AGG | + | chr5.1:1285117-1285136 | None:intergenic | 45.0% | |
| CTCTTCGCCTAACTGTGAAA+TGG | - | chr5.1:1288652-1288671 | MS.gene49466:CDS | 45.0% | |
| CTGGTACATTGTTGTAGCAG+GGG | + | chr5.1:1285759-1285778 | None:intergenic | 45.0% | |
| CTTGTCTCTTGGCCAAAGTT+TGG | + | chr5.1:1287387-1287406 | None:intergenic | 45.0% | |
| GAAATGCCAGAAATTCTCCG+TGG | - | chr5.1:1288572-1288591 | MS.gene49466:intron | 45.0% | |
| GAAGATCATCCTGATTCTGC+TGG | - | chr5.1:1288284-1288303 | MS.gene49466:CDS | 45.0% | |
| GAATCTAGATTCCTTGAGGG+AGG | + | chr5.1:1285095-1285114 | None:intergenic | 45.0% | |
| GACGATCCCATTTCACAGTT+AGG | + | chr5.1:1288662-1288681 | None:intergenic | 45.0% | |
| GAGGCTGAATTGCATCTTCA+AGG | - | chr5.1:1285582-1285601 | MS.gene49466:intron | 45.0% | |
| GAGTAGCAATGATGTAGAGC+TGG | + | chr5.1:1286763-1286782 | None:intergenic | 45.0% | |
| GATGATGCATATGCTCAGGA+AGG | - | chr5.1:1285540-1285559 | MS.gene49466:intron | 45.0% | |
| GCACAGGACAATCTTGCTAA+TGG | - | chr5.1:1285885-1285904 | MS.gene49466:intron | 45.0% | |
| GCCAAGAGACAAGTAAACTC+TGG | - | chr5.1:1287394-1287413 | MS.gene49466:intron | 45.0% | |
| GCCAGAGTTTACTTGTCTCT+TGG | + | chr5.1:1287398-1287417 | None:intergenic | 45.0% | |
| GCTAATGGTTCTTCGATGAC+TGG | - | chr5.1:1285900-1285919 | MS.gene49466:intron | 45.0% | |
| GCTACCGTAAAGGATCACAA+AGG | - | chr5.1:1286693-1286712 | MS.gene49466:intron | 45.0% | |
| GCTTTCGCGTCTTAATTCCA+GGG | - | chr5.1:1285326-1285345 | MS.gene49466:intron | 45.0% | |
| GGTCTGATGCAGAAATCATC+AGG | - | chr5.1:1285705-1285724 | MS.gene49466:intron | 45.0% | |
| TAACCAGCCGGAAGAATCAA+AGG | - | chr5.1:1285239-1285258 | MS.gene49466:CDS | 45.0% | |
| TAAGGGTGATGTGTGAGAGA+AGG | + | chr5.1:1288737-1288756 | None:intergenic | 45.0% | |
| TAGCAAGATTGTCCTGTGCA+CGG | + | chr5.1:1285884-1285903 | None:intergenic | 45.0% | |
| TAGCCATGTAAGCTATAGGC+TGG | + | chr5.1:1286893-1286912 | None:intergenic | 45.0% | |
| TCAAACCTGGAAAGCCGTAA+AGG | + | chr5.1:1288320-1288339 | None:intergenic | 45.0% | |
| TCAGCACTTCGGATGACTTT+AGG | + | chr5.1:1287706-1287725 | None:intergenic | 45.0% | |
| TCCATTAGCTGCAGATGTGA+AGG | - | chr5.1:1288017-1288036 | MS.gene49466:CDS | 45.0% | |
| TCCTCATCACCACAAAGTGT+AGG | + | chr5.1:1285483-1285502 | None:intergenic | 45.0% | |
| TCCTGGTACATTGTTGTAGC+AGG | + | chr5.1:1285761-1285780 | None:intergenic | 45.0% | |
| TGGTACATTGTTGTAGCAGG+GGG | + | chr5.1:1285758-1285777 | None:intergenic | 45.0% | |
| TGTGTGAGAGAAGGAAACGA+TGG | + | chr5.1:1288728-1288747 | None:intergenic | 45.0% | |
| TTCCCTTACATTGCAGACCA+TGG | - | chr5.1:1288076-1288095 | MS.gene49466:CDS | 45.0% | |
| TTCGCAAAGATGCATGTTGC+CGG | - | chr5.1:1286644-1286663 | MS.gene49466:CDS | 45.0% | |
| TTGTGTGACAGATTCAGTCG+AGG | - | chr5.1:1285563-1285582 | MS.gene49466:intron | 45.0% | |
| ! | CCCTTTGATGAAAAGGGCAT+CGG | + | chr5.1:1288431-1288450 | None:intergenic | 45.0% |
| ! | CCGATGCCCTTTTCATCAAA+GGG | - | chr5.1:1288428-1288447 | MS.gene49466:CDS | 45.0% |
| ! | GAAAATGGTCGCAAAGTGCT+TGG | + | chr5.1:1287262-1287281 | None:intergenic | 45.0% |
| ! | GAATGCACTTGCTACCGTAA+AGG | - | chr5.1:1286683-1286702 | MS.gene49466:intron | 45.0% |
| ! | GAATTAAGACGCGAAAGCGT+AGG | + | chr5.1:1285324-1285343 | None:intergenic | 45.0% |
| ! | GAGAGTACAAGACTGGTTGA+AGG | + | chr5.1:1287174-1287193 | None:intergenic | 45.0% |
| ! | GCTGAGCAACTGATTTCAGT+AGG | - | chr5.1:1285363-1285382 | MS.gene49466:intron | 45.0% |
| ! | TACGTTTTGCAGGGAGCAAT+TGG | + | chr5.1:1286617-1286636 | None:intergenic | 45.0% |
| ! | TCCGATGCCCTTTTCATCAA+AGG | - | chr5.1:1288427-1288446 | MS.gene49466:CDS | 45.0% |
| ! | TCCTACACTTTGTGGTGATG+AGG | - | chr5.1:1285479-1285498 | MS.gene49466:CDS | 45.0% |
| ! | TGGTTTCGCAAGCTTTTGAC+TGG | + | chr5.1:1288504-1288523 | None:intergenic | 45.0% |
| !! | CCTCACTGGTTCTGGATATT+TGG | - | chr5.1:1288478-1288497 | MS.gene49466:intron | 45.0% |
| !!! | GCTGAAGCTGGAGTTTTGTT+TGG | + | chr5.1:1287837-1287856 | None:intergenic | 45.0% |
| !!! | GGCCAAAGTTTTTTTCAGCC+AGG | - | chr5.1:1287415-1287434 | MS.gene49466:intron | 45.0% |
| !! | TAGTTAAAAAAAAAAAAAAA+AGG | + | chr5.1:1285146-1285165 | None:intergenic | 5.0% |
| AGAGCCAGTCGGAGAAATTG+AGG | - | chr5.1:1287052-1287071 | MS.gene49466:CDS | 50.0% | |
| AGATGCATGTTGCCGGGTAT+CGG | - | chr5.1:1286651-1286670 | MS.gene49466:CDS | 50.0% | |
| AGTAGGCTGAACCCCATTGT+CGG | + | chr5.1:1286859-1286878 | None:intergenic | 50.0% | |
| ATGCCAGAAATTCTCCGTGG+TGG | - | chr5.1:1288575-1288594 | MS.gene49466:intron | 50.0% | |
| ATTGGACCCATCCGACAATG+GGG | - | chr5.1:1286845-1286864 | MS.gene49466:CDS | 50.0% | |
| ATTGGCGTTCCAAGCTACCA+TGG | + | chr5.1:1288096-1288115 | None:intergenic | 50.0% | |
| CAACACCTTTACGGCTTTCC+AGG | - | chr5.1:1288312-1288331 | MS.gene49466:CDS | 50.0% | |
| CATCCCTCAATTTCTCCGAC+TGG | + | chr5.1:1287059-1287078 | None:intergenic | 50.0% | |
| CATTGCAGACCATGGTAGCT+TGG | - | chr5.1:1288084-1288103 | MS.gene49466:CDS | 50.0% | |
| CCCTGCTACAACAATGTACC+AGG | - | chr5.1:1285757-1285776 | MS.gene49466:intron | 50.0% | |
| CCCTTCACATCTGCAGCTAA+TGG | + | chr5.1:1288021-1288040 | None:intergenic | 50.0% | |
| CCGAGAGATGCTGATGTTCT+TGG | + | chr5.1:1286794-1286813 | None:intergenic | 50.0% | |
| CCTTCCGGTTCTCAAAGGAA+GGG | - | chr5.1:1287350-1287369 | MS.gene49466:intron | 50.0% | |
| CGCTTTCGCGTCTTAATTCC+AGG | - | chr5.1:1285325-1285344 | MS.gene49466:intron | 50.0% | |
| CTGACTCTGTGCCTGAAACT+GGG | - | chr5.1:1287722-1287741 | MS.gene49466:intron | 50.0% | |
| CTGGGGTCTCAACACCTTTA+CGG | - | chr5.1:1288303-1288322 | MS.gene49466:CDS | 50.0% | |
| CTTCCGGTTCTCAAAGGAAG+GGG | - | chr5.1:1287351-1287370 | MS.gene49466:intron | 50.0% | |
| GAATTGGACCCATCCGACAA+TGG | - | chr5.1:1286843-1286862 | MS.gene49466:CDS | 50.0% | |
| GAGCCAGTCGGAGAAATTGA+GGG | - | chr5.1:1287053-1287072 | MS.gene49466:CDS | 50.0% | |
| GCAATGATGTAGAGCTGGTC+AGG | + | chr5.1:1286758-1286777 | None:intergenic | 50.0% | |
| GCCATGTAAGCTATAGGCTG+GGG | + | chr5.1:1286891-1286910 | None:intergenic | 50.0% | |
| GTAGCTTGGAACGCCAATCA+GGG | - | chr5.1:1288098-1288117 | MS.gene49466:CDS | 50.0% | |
| TAGCCTTTGATTCTTCCGGC+TGG | + | chr5.1:1285245-1285264 | None:intergenic | 50.0% | |
| TAGGAGAGCTATCACCACCA+CGG | + | chr5.1:1288592-1288611 | None:intergenic | 50.0% | |
| TCACCACCACGGAGAATTTC+TGG | + | chr5.1:1288581-1288600 | None:intergenic | 50.0% | |
| TCCCCAGCCTATAGCTTACA+TGG | - | chr5.1:1286887-1286906 | MS.gene49466:CDS | 50.0% | |
| TCGCAAAGATGCATGTTGCC+GGG | - | chr5.1:1286645-1286664 | MS.gene49466:CDS | 50.0% | |
| TGACTCTGTGCCTGAAACTG+GGG | - | chr5.1:1287723-1287742 | MS.gene49466:intron | 50.0% | |
| ! | AACTAGTGACAAGGGTGTGG+AGG | - | chr5.1:1288226-1288245 | MS.gene49466:CDS | 50.0% |
| ! | GAAGGGTGCAAGAACGCATT+TGG | - | chr5.1:1288035-1288054 | MS.gene49466:CDS | 50.0% |
| ! | GCGCTGTCTTGACTTTGAGA+TGG | - | chr5.1:1286503-1286522 | MS.gene49466:intron | 50.0% |
| !! | CTTGTTTCTGTCACACACCG+TGG | - | chr5.1:1286471-1286490 | MS.gene49466:intron | 50.0% |
| !! | GTTACAACCCTCACTGGTTC+TGG | - | chr5.1:1288470-1288489 | MS.gene49466:intron | 50.0% |
| AGGCGTAAGTCAGAGCCAGT+CGG | - | chr5.1:1287041-1287060 | MS.gene49466:CDS | 55.0% | |
| CAGGCACAGAGTCAGCACTT+CGG | + | chr5.1:1287717-1287736 | None:intergenic | 55.0% | |
| CTGTCACACACCGTGGCATT+CGG | - | chr5.1:1286478-1286497 | MS.gene49466:intron | 55.0% | |
| GCCTTCCGGTTCTCAAAGGA+AGG | - | chr5.1:1287349-1287368 | MS.gene49466:intron | 55.0% | |
| GCTGAACCCCATTGTCGGAT+GGG | + | chr5.1:1286854-1286873 | None:intergenic | 55.0% | |
| GCTTCAGCGCGCCATAAAAG+AGG | - | chr5.1:1287849-1287868 | MS.gene49466:CDS | 55.0% | |
| GGCTGGGGACAATCTTCAGT+AGG | + | chr5.1:1286876-1286895 | None:intergenic | 55.0% | |
| GGTAGCTTGGAACGCCAATC+AGG | - | chr5.1:1288097-1288116 | MS.gene49466:CDS | 55.0% | |
| GTTGAGACCCCAGCAGAATC+AGG | + | chr5.1:1288296-1288315 | None:intergenic | 55.0% | |
| TCCTTGAGGGAGGTGACATG+AGG | + | chr5.1:1285085-1285104 | None:intergenic | 55.0% | |
| TGAGGCGACGCGAAAACAGA+CGG | + | chr5.1:1285067-1285086 | None:intergenic | 55.0% | |
| TGCGATCTTCCTTCGCACAC+TGG | + | chr5.1:1286529-1286548 | None:intergenic | 55.0% | |
| TTCCGAGCTAGTAGCCGCAA+CGG | - | chr5.1:1285851-1285870 | MS.gene49466:CDS | 55.0% | |
| TTGAGATGGCCAGTGTGCGA+AGG | - | chr5.1:1286517-1286536 | MS.gene49466:intron | 55.0% | |
| ! | CCCTTCCTTTGAGAACCGGA+AGG | + | chr5.1:1287353-1287372 | None:intergenic | 55.0% |
| ! | CCTAGCCTTCCGGTTCTCAA+AGG | - | chr5.1:1287345-1287364 | MS.gene49466:intron | 55.0% |
| ! | CCTTTGAGAACCGGAAGGCT+AGG | + | chr5.1:1287348-1287367 | None:intergenic | 55.0% |
| ! | CTTTTATGGCGCGCTGAAGC+TGG | + | chr5.1:1287849-1287868 | None:intergenic | 55.0% |
| ! | GCTGACTCTGTGCCTGAAAC+TGG | - | chr5.1:1287721-1287740 | MS.gene49466:intron | 55.0% |
| ! | GGTCCCCTTCCTTTGAGAAC+CGG | + | chr5.1:1287357-1287376 | None:intergenic | 55.0% |
| AACGGACACTGACCGTGCAC+AGG | - | chr5.1:1285869-1285888 | MS.gene49466:intron | 60.0% | |
| GCCTCATGTCACCTCCCTCA+AGG | - | chr5.1:1285081-1285100 | MS.gene49466:CDS | 60.0% | |
| GGATCGTCTCCTAGTCGCAG+AGG | - | chr5.1:1288674-1288693 | MS.gene49466:CDS | 60.0% | |
| GGCTGAACCCCATTGTCGGA+TGG | + | chr5.1:1286855-1286874 | None:intergenic | 60.0% | |
| GTCCGTTGCGGCTACTAGCT+CGG | + | chr5.1:1285856-1285875 | None:intergenic | 60.0% | |
| TCACACACCGTGGCATTCGG+AGG | - | chr5.1:1286481-1286500 | MS.gene49466:intron | 60.0% | |
| TCGTCTCCTAGTCGCAGAGG+TGG | - | chr5.1:1288677-1288696 | MS.gene49466:CDS | 60.0% | |
| TGCACGGTCAGTGTCCGTTG+CGG | + | chr5.1:1285868-1285887 | None:intergenic | 60.0% | |
| TTCCTGCCACCTCTGCGACT+AGG | + | chr5.1:1288686-1288705 | None:intergenic | 60.0% | |
| CTCCTAGTCGCAGAGGTGGC+AGG | - | chr5.1:1288681-1288700 | MS.gene49466:CDS | 65.0% | |
| GACAGCGCCTCCGAATGCCA+CGG | + | chr5.1:1286491-1286510 | None:intergenic | 65.0% | |
| GGCGACGCGAAAACAGACGG+AGG | + | chr5.1:1285064-1285083 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 1284956 | 1288757 | 1284956 | ID=MS.gene49466 |
| chr5.1 | mRNA | 1284956 | 1288757 | 1284956 | ID=MS.gene49466.t1;Parent=MS.gene49466 |
| chr5.1 | exon | 1288591 | 1288757 | 1288591 | ID=MS.gene49466.t1.exon1;Parent=MS.gene49466.t1 |
| chr5.1 | CDS | 1288591 | 1288757 | 1288591 | ID=cds.MS.gene49466.t1;Parent=MS.gene49466.t1 |
| chr5.1 | exon | 1287763 | 1288477 | 1287763 | ID=MS.gene49466.t1.exon2;Parent=MS.gene49466.t1 |
| chr5.1 | CDS | 1287763 | 1288477 | 1287763 | ID=cds.MS.gene49466.t1;Parent=MS.gene49466.t1 |
| chr5.1 | exon | 1286764 | 1287242 | 1286764 | ID=MS.gene49466.t1.exon3;Parent=MS.gene49466.t1 |
| chr5.1 | CDS | 1286764 | 1287242 | 1286764 | ID=cds.MS.gene49466.t1;Parent=MS.gene49466.t1 |
| chr5.1 | exon | 1286596 | 1286670 | 1286596 | ID=MS.gene49466.t1.exon4;Parent=MS.gene49466.t1 |
| chr5.1 | CDS | 1286596 | 1286670 | 1286596 | ID=cds.MS.gene49466.t1;Parent=MS.gene49466.t1 |
| chr5.1 | exon | 1285969 | 1286149 | 1285969 | ID=MS.gene49466.t1.exon5;Parent=MS.gene49466.t1 |
| chr5.1 | CDS | 1285969 | 1286149 | 1285969 | ID=cds.MS.gene49466.t1;Parent=MS.gene49466.t1 |
| chr5.1 | exon | 1285790 | 1285885 | 1285790 | ID=MS.gene49466.t1.exon6;Parent=MS.gene49466.t1 |
| chr5.1 | CDS | 1285790 | 1285885 | 1285790 | ID=cds.MS.gene49466.t1;Parent=MS.gene49466.t1 |
| chr5.1 | exon | 1285645 | 1285711 | 1285645 | ID=MS.gene49466.t1.exon7;Parent=MS.gene49466.t1 |
| chr5.1 | CDS | 1285645 | 1285711 | 1285645 | ID=cds.MS.gene49466.t1;Parent=MS.gene49466.t1 |
| chr5.1 | exon | 1285380 | 1285533 | 1285380 | ID=MS.gene49466.t1.exon8;Parent=MS.gene49466.t1 |
| chr5.1 | CDS | 1285380 | 1285533 | 1285380 | ID=cds.MS.gene49466.t1;Parent=MS.gene49466.t1 |
| chr5.1 | exon | 1284956 | 1285295 | 1284956 | ID=MS.gene49466.t1.exon9;Parent=MS.gene49466.t1 |
| chr5.1 | CDS | 1284956 | 1285295 | 1284956 | ID=cds.MS.gene49466.t1;Parent=MS.gene49466.t1 |
| Gene Sequence |
| Protein sequence |
