Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054459.t1 | XP_013451238.1 | 95.5 | 465 | 19 | 1 | 1 | 463 | 1 | 465 | 1.30E-256 | 895.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054459.t1 | O04251 | 37.1 | 89 | 53 | 3 | 4 | 90 | 112 | 199 | 1.4e-12 | 75.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054459.t1 | A0A072U6H8 | 95.5 | 465 | 19 | 1 | 1 | 463 | 1 | 465 | 9.3e-257 | 895.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05124 | MS.gene054459 | 0.807693 | 4.46E-50 | -1.69E-46 |
| MS.gene051914 | MS.gene054459 | 0.819797 | 9.62E-53 | -1.69E-46 |
| MS.gene053173 | MS.gene054459 | 0.84365 | 1.23E-58 | -1.69E-46 |
| MS.gene054457 | MS.gene054459 | 0.847907 | 8.59E-60 | -1.69E-46 |
| MS.gene054459 | MS.gene054551 | 0.825905 | 3.63E-54 | -1.69E-46 |
| MS.gene054459 | MS.gene054633 | 0.802108 | 6.56E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene054662 | 0.850203 | 1.98E-60 | -1.69E-46 |
| MS.gene054459 | MS.gene05640 | 0.833564 | 4.96E-56 | -1.69E-46 |
| MS.gene054459 | MS.gene057367 | 0.809936 | 1.48E-50 | -1.69E-46 |
| MS.gene054459 | MS.gene06093 | 0.858043 | 1.08E-62 | -1.69E-46 |
| MS.gene054459 | MS.gene061260 | 0.80243 | 5.63E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene063308 | 0.848614 | 5.48E-60 | -1.69E-46 |
| MS.gene054459 | MS.gene066026 | 0.815624 | 8.41E-52 | -1.69E-46 |
| MS.gene054459 | MS.gene066779 | 0.810909 | 9.12E-51 | -1.69E-46 |
| MS.gene054459 | MS.gene067030 | 0.820797 | 5.67E-53 | -1.69E-46 |
| MS.gene054459 | MS.gene070800 | 0.822807 | 1.94E-53 | -1.69E-46 |
| MS.gene054459 | MS.gene071422 | 0.839958 | 1.16E-57 | -1.69E-46 |
| MS.gene054459 | MS.gene072471 | 0.8001 | 1.69E-48 | -1.69E-46 |
| MS.gene054459 | MS.gene073059 | 0.845231 | 4.62E-59 | -1.69E-46 |
| MS.gene054459 | MS.gene073062 | 0.842781 | 2.10E-58 | -1.69E-46 |
| MS.gene054459 | MS.gene08109 | 0.806617 | 7.54E-50 | -1.69E-46 |
| MS.gene054459 | MS.gene09885 | 0.801687 | 8.00E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene20224 | 0.844435 | 7.57E-59 | -1.69E-46 |
| MS.gene054459 | MS.gene22500 | 0.807093 | 5.98E-50 | -1.69E-46 |
| MS.gene054459 | MS.gene23886 | 0.819111 | 1.38E-52 | -1.69E-46 |
| MS.gene054459 | MS.gene28807 | 0.805991 | 1.02E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene32740 | 0.837409 | 5.29E-57 | -1.69E-46 |
| MS.gene054459 | MS.gene36271 | 0.815852 | 7.47E-52 | -1.69E-46 |
| MS.gene054459 | MS.gene37495 | 0.837797 | 4.21E-57 | -1.69E-46 |
| MS.gene054459 | MS.gene38724 | 0.817348 | 3.45E-52 | -1.69E-46 |
| MS.gene054459 | MS.gene39911 | 0.811053 | 8.49E-51 | -1.69E-46 |
| MS.gene054459 | MS.gene40241 | 0.8048 | 1.82E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene42651 | 0.821565 | 3.77E-53 | -1.69E-46 |
| MS.gene054459 | MS.gene42663 | 0.832018 | 1.20E-55 | -1.69E-46 |
| MS.gene054459 | MS.gene47007 | 0.821515 | 3.88E-53 | -1.69E-46 |
| MS.gene054459 | MS.gene48492 | 0.814 | 1.93E-51 | -1.69E-46 |
| MS.gene054459 | MS.gene49349 | 0.80526 | 1.45E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene49465 | 0.801982 | 6.96E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene49466 | 0.802016 | 6.85E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene50576 | 0.834539 | 2.83E-56 | -1.69E-46 |
| MS.gene054459 | MS.gene51554 | 0.810239 | 1.27E-50 | -1.69E-46 |
| MS.gene054459 | MS.gene52980 | 0.821776 | 3.37E-53 | -1.69E-46 |
| MS.gene054459 | MS.gene53887 | 0.805115 | 1.56E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene55401 | 0.854654 | 1.07E-61 | -1.69E-46 |
| MS.gene054459 | MS.gene55817 | 0.822397 | 2.42E-53 | -1.69E-46 |
| MS.gene054459 | MS.gene57750 | 0.822437 | 2.37E-53 | -1.69E-46 |
| MS.gene054459 | MS.gene57751 | 0.80531 | 1.42E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene58112 | 0.80471 | 1.90E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene58132 | 0.805346 | 1.40E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene58234 | 0.803852 | 2.86E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene58753 | 0.808495 | 3.01E-50 | -1.69E-46 |
| MS.gene054459 | MS.gene58754 | 0.801086 | 1.06E-48 | -1.69E-46 |
| MS.gene054459 | MS.gene58835 | 0.814792 | 1.29E-51 | -1.69E-46 |
| MS.gene054459 | MS.gene60269 | 0.828128 | 1.07E-54 | -1.69E-46 |
| MS.gene054459 | MS.gene61618 | 0.824348 | 8.47E-54 | -1.69E-46 |
| MS.gene054459 | MS.gene65301 | 0.846964 | 1.56E-59 | -1.69E-46 |
| MS.gene054459 | MS.gene65431 | 0.827489 | 1.52E-54 | -1.69E-46 |
| MS.gene054459 | MS.gene66615 | 0.810968 | 8.85E-51 | -1.69E-46 |
| MS.gene054459 | MS.gene67555 | 0.834592 | 2.74E-56 | -1.69E-46 |
| MS.gene054459 | MS.gene70203 | 0.804508 | 2.09E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene70263 | 0.805123 | 1.55E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene70279 | 0.816918 | 4.32E-52 | -1.69E-46 |
| MS.gene054459 | MS.gene72088 | 0.834877 | 2.32E-56 | -1.69E-46 |
| MS.gene054459 | MS.gene75579 | 0.830989 | 2.15E-55 | -1.69E-46 |
| MS.gene054459 | MS.gene75642 | 0.838492 | 2.78E-57 | -1.69E-46 |
| MS.gene054459 | MS.gene75761 | 0.836129 | 1.12E-56 | -1.69E-46 |
| MS.gene054459 | MS.gene75915 | 0.847829 | 9.02E-60 | -1.69E-46 |
| MS.gene054459 | MS.gene75918 | 0.845401 | 4.16E-59 | -1.69E-46 |
| MS.gene054459 | MS.gene77563 | 0.806667 | 7.36E-50 | -1.69E-46 |
| MS.gene054459 | MS.gene78224 | 0.805778 | 1.13E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene78972 | 0.812149 | 4.90E-51 | -1.69E-46 |
| MS.gene054459 | MS.gene79251 | 0.803283 | 3.75E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene79921 | 0.843978 | 1.00E-58 | -1.69E-46 |
| MS.gene054459 | MS.gene87884 | 0.804386 | 2.21E-49 | -1.69E-46 |
| MS.gene054459 | MS.gene89090 | 0.811797 | 5.85E-51 | -1.69E-46 |
| MS.gene054459 | MS.gene89653 | 0.81011 | 1.36E-50 | -1.69E-46 |
| MS.gene054459 | MS.gene93058 | 0.804242 | 2.37E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054459.t1 | MTR_6g016895 | 95.484 | 465 | 19 | 1 | 1 | 463 | 1 | 465 | 0.0 | 908 |
| MS.gene054459.t1 | MTR_6g016895 | 95.464 | 463 | 20 | 1 | 1 | 463 | 1 | 462 | 0.0 | 905 |
| MS.gene054459.t1 | MTR_4g124020 | 55.128 | 78 | 33 | 1 | 167 | 244 | 5 | 80 | 7.78e-19 | 81.3 |
| MS.gene054459.t1 | MTR_1g087290 | 39.326 | 89 | 51 | 3 | 4 | 90 | 111 | 198 | 1.87e-14 | 76.6 |
| MS.gene054459.t1 | MTR_1g087290 | 39.326 | 89 | 51 | 3 | 4 | 90 | 111 | 198 | 1.93e-14 | 76.6 |
| MS.gene054459.t1 | MTR_8g005560 | 55.224 | 67 | 28 | 1 | 179 | 245 | 81 | 145 | 5.43e-14 | 69.7 |
| MS.gene054459.t1 | MTR_8g006610 | 56.061 | 66 | 27 | 1 | 179 | 244 | 52 | 115 | 5.74e-14 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene054459.t1 | AT1G67180 | 39.792 | 480 | 245 | 11 | 1 | 463 | 1 | 453 | 3.40e-104 | 318 |
| MS.gene054459.t1 | AT1G67180 | 39.792 | 480 | 245 | 11 | 1 | 463 | 1 | 453 | 3.40e-104 | 318 |
| MS.gene054459.t1 | AT1G67180 | 39.759 | 415 | 204 | 12 | 1 | 399 | 1 | 385 | 1.07e-81 | 258 |
| MS.gene054459.t1 | AT1G67180 | 32.997 | 397 | 222 | 12 | 84 | 463 | 2 | 371 | 2.02e-54 | 186 |
| MS.gene054459.t1 | AT1G67180 | 32.997 | 397 | 222 | 12 | 84 | 463 | 2 | 371 | 2.02e-54 | 186 |
| MS.gene054459.t1 | AT1G67180 | 31.024 | 332 | 183 | 12 | 84 | 399 | 2 | 303 | 2.16e-32 | 125 |
| MS.gene054459.t1 | AT1G67180 | 31.024 | 332 | 183 | 12 | 84 | 399 | 2 | 303 | 2.16e-32 | 125 |
| MS.gene054459.t1 | AT4G02110 | 37.079 | 89 | 53 | 3 | 4 | 90 | 112 | 199 | 4.12e-14 | 75.5 |
| MS.gene054459.t1 | AT4G02110 | 51.852 | 54 | 24 | 2 | 38 | 90 | 18 | 70 | 9.99e-12 | 68.2 |
Find 105 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCGATGGCCCCTATAATTT+TGG | 0.151110 | 6.2:-12490583 | MS.gene054459:CDS |
| TCCTCTGACCACTTTATTCT+TGG | 0.198912 | 6.2:+12491251 | None:intergenic |
| GTGCTTAAATCCAAAATTAT+AGG | 0.247700 | 6.2:+12490573 | None:intergenic |
| TGCAAGGTATAAGAATCTTC+TGG | 0.269284 | 6.2:+12491915 | None:intergenic |
| TGCTTAAATCCAAAATTATA+GGG | 0.275232 | 6.2:+12490574 | None:intergenic |
| TCTGGAAATTCTTGATCAAT+TGG | 0.294794 | 6.2:+12489112 | None:intergenic |
| AGAAGTAGGGCCATTATTAA+TGG | 0.318080 | 6.2:-12491307 | MS.gene054459:CDS |
| CTATAAACAAAGTTGAATTT+CGG | 0.329097 | 6.2:+12490352 | None:intergenic |
| ACTGGAACTTCCATTAATAA+TGG | 0.331482 | 6.2:+12491297 | None:intergenic |
| ATTAAGCTCATTTCGCATTC+CGG | 0.336644 | 6.2:-12492800 | MS.gene054459:CDS |
| TTTCATGATCTTCATAATAC+TGG | 0.336831 | 6.2:+12489216 | None:intergenic |
| AGATTCTTCTTTACTGAAAC+AGG | 0.344144 | 6.2:-12491154 | MS.gene054459:intron |
| CGACATATCTCCAACGTAAC+TGG | 0.349272 | 6.2:+12492775 | None:intergenic |
| CAAAATACTGACTTCAGTTC+CGG | 0.356103 | 6.2:-12491201 | MS.gene054459:CDS |
| CAATTCTCAAGTAGATCTTC+AGG | 0.358088 | 6.2:+12488661 | None:intergenic |
| GGTCTGTGGAATTTCTGTTT+TGG | 0.374321 | 6.2:-12491178 | MS.gene054459:CDS |
| ATTTCCAGACAATAGCTTAG+AGG | 0.377434 | 6.2:-12489098 | MS.gene054459:intron |
| CAATATTTATAGAAAGCAAT+GGG | 0.396864 | 6.2:-12489268 | MS.gene054459:intron |
| GATTGAATCGCTCGAGTTCA+CGG | 0.397257 | 6.2:+12492825 | None:intergenic |
| CTGGAAATTCTTGATCAATT+GGG | 0.400835 | 6.2:+12489113 | None:intergenic |
| TGTAATCACATGGAATTGTC+TGG | 0.410081 | 6.2:+12489155 | None:intergenic |
| GCCTATCTATTTCGCAAAGC+TGG | 0.414993 | 6.2:+12490544 | None:intergenic |
| GTCGAAGTCAATTACTCATC+TGG | 0.430392 | 6.2:-12492756 | MS.gene054459:intron |
| CATACCTCTAAGCTATTGTC+TGG | 0.432494 | 6.2:+12489094 | None:intergenic |
| TTACCTTTCCTTGACAGTAT+AGG | 0.438031 | 6.2:+12490687 | None:intergenic |
| GACCACTTTATTCTTGGATA+AGG | 0.439955 | 6.2:+12491257 | None:intergenic |
| CAATATTGACATGGCGAGAA+AGG | 0.455363 | 6.2:+12490493 | None:intergenic |
| GCTAGATGTAGCTGCAGCTT+CGG | 0.455457 | 6.2:+12490515 | None:intergenic |
| GTACTTGCTTGAACATTGAC+TGG | 0.455699 | 6.2:+12491279 | None:intergenic |
| AAAATACTGACTTCAGTTCC+GGG | 0.458436 | 6.2:-12491200 | MS.gene054459:CDS |
| ACCAGCTTTGCGAAATAGAT+AGG | 0.461923 | 6.2:-12490545 | MS.gene054459:CDS |
| GCAAGGTATAAGAATCTTCT+GGG | 0.467419 | 6.2:+12491916 | None:intergenic |
| TTGGGTTGAAGACTGTATAA+AGG | 0.468632 | 6.2:-12491952 | MS.gene054459:CDS |
| GACATTCTCGTAAAGGAAGA+AGG | 0.471809 | 6.2:-12490629 | MS.gene054459:CDS |
| AAGAATTCATTCTTATTGCA+TGG | 0.472776 | 6.2:-12488620 | MS.gene054459:CDS |
| AGGAAAGGTAAAAGAAATAG+AGG | 0.477300 | 6.2:-12490675 | MS.gene054459:CDS |
| TTGTGTAATTTGCGGTGGTC+GGG | 0.484418 | 6.2:-12488686 | MS.gene054459:CDS |
| CTTGTGTAATTTGCGGTGGT+CGG | 0.486425 | 6.2:-12488687 | MS.gene054459:CDS |
| CAGGTGTGTTGGAAGTTTGA+AGG | 0.496423 | 6.2:-12492026 | MS.gene054459:CDS |
| CTGATGTTTGTGTCAGAGGA+AGG | 0.500424 | 6.2:+12490322 | None:intergenic |
| ATCTCCAACGTAACTGGCAC+CGG | 0.507756 | 6.2:+12492781 | None:intergenic |
| CATGACAACTCATTTGAAGT+AGG | 0.507841 | 6.2:+12490231 | None:intergenic |
| TGGACCCTCCATTGCGACCA+TGG | 0.508167 | 6.2:-12488600 | MS.gene054459:CDS |
| CATGTCCATGGTCGCAATGG+AGG | 0.508381 | 6.2:+12488595 | None:intergenic |
| AATAGTGAAGGACTTGATGC+TGG | 0.509801 | 6.2:-12490456 | MS.gene054459:CDS |
| CCTTTCCTTGACAGTATAGG+TGG | 0.513769 | 6.2:+12490690 | None:intergenic |
| GATGTTTGTGTCAGAGGAAG+GGG | 0.513973 | 6.2:+12490324 | None:intergenic |
| ATGACAACTCATTTGAAGTA+GGG | 0.514847 | 6.2:+12490232 | None:intergenic |
| GACTTCAGTTCCGGGGTCTG+TGG | 0.517468 | 6.2:-12491192 | MS.gene054459:CDS |
| TCAATATTTATAGAAAGCAA+TGG | 0.518517 | 6.2:-12489269 | MS.gene054459:intron |
| TCTACTGATGTTTGTGTCAG+AGG | 0.523823 | 6.2:+12490318 | None:intergenic |
| TTCAAACTGTCCTTTGTGCA+AGG | 0.528208 | 6.2:-12489239 | MS.gene054459:CDS |
| TCAGGTGCTTGTGTAATTTG+CGG | 0.532416 | 6.2:-12488694 | MS.gene054459:CDS |
| TACCTTATCCAAGAATAAAG+TGG | 0.536796 | 6.2:-12491259 | MS.gene054459:CDS |
| AGTTGTCATGTGTCATATGT+TGG | 0.545984 | 6.2:-12490218 | MS.gene054459:CDS |
| ATATGTAGTCAACCACCGTT+GGG | 0.547408 | 6.2:-12491970 | MS.gene054459:CDS |
| ATGGACATGCACTTCTTGCA+AGG | 0.547960 | 6.2:-12488581 | MS.gene054459:CDS |
| AGAAGGGTTGTGAGAAATGA+TGG | 0.551656 | 6.2:-12490612 | MS.gene054459:CDS |
| ACTAACAATGGAAGTTCAGA+TGG | 0.555404 | 6.2:-12490414 | MS.gene054459:CDS |
| GTGCATGTCCATGGTCGCAA+TGG | 0.556713 | 6.2:+12488592 | None:intergenic |
| GTTGAAGACTGTATAAAGGA+AGG | 0.565722 | 6.2:-12491948 | MS.gene054459:CDS |
| TGATGTTTGTGTCAGAGGAA+GGG | 0.566455 | 6.2:+12490323 | None:intergenic |
| AACAGAAATTCCACAGACCC+CGG | 0.570394 | 6.2:+12491182 | None:intergenic |
| CATTCCGGTGCCAGTTACGT+TGG | 0.571593 | 6.2:-12492785 | MS.gene054459:CDS |
| GTTTCAATGTTCAGGTGTGT+TGG | 0.572241 | 6.2:-12492037 | MS.gene054459:intron |
| TCGGCTAGACATTCTCGTAA+AGG | 0.573886 | 6.2:-12490636 | MS.gene054459:CDS |
| ATGTCCATGGTCGCAATGGA+GGG | 0.574382 | 6.2:+12488596 | None:intergenic |
| CTCTGCGATCAACCCAACCC+TGG | 0.576285 | 6.2:+12490133 | None:intergenic |
| TTGCAAGAAGTGCATGTCCA+TGG | 0.577126 | 6.2:+12488583 | None:intergenic |
| TATATGTAGTCAACCACCGT+TGG | 0.579549 | 6.2:-12491971 | MS.gene054459:CDS |
| GTAATCACATGGAATTGTCT+GGG | 0.585390 | 6.2:+12489156 | None:intergenic |
| AAGATTCTTATACCTTGCAA+AGG | 0.588139 | 6.2:-12491911 | MS.gene054459:intron |
| AGTCAAATTAGAACTAACAA+TGG | 0.597421 | 6.2:-12490426 | MS.gene054459:CDS |
| AAATGATGGTGAAGTGGCGA+TGG | 0.603502 | 6.2:-12490598 | MS.gene054459:CDS |
| GGTTGAAGGTATGGATCGAG+TGG | 0.604408 | 6.2:-12492867 | None:intergenic |
| GACAGATTTCAGTTCAACAA+GGG | 0.604559 | 6.2:-12490196 | MS.gene054459:CDS |
| GGACAGATTTCAGTTCAACA+AGG | 0.605166 | 6.2:-12490197 | MS.gene054459:CDS |
| ACATTCTCGTAAAGGAAGAA+GGG | 0.606318 | 6.2:-12490628 | MS.gene054459:CDS |
| AGGAAATGATGTTAGTACCT+CGG | 0.607880 | 6.2:-12490655 | MS.gene054459:CDS |
| ATTATCAACCACATCACCAT+CGG | 0.608577 | 6.2:+12490266 | None:intergenic |
| GCTTAAATCCAAAATTATAG+GGG | 0.610355 | 6.2:+12490575 | None:intergenic |
| CATATCCACCTATACTGTCA+AGG | 0.611976 | 6.2:-12490695 | MS.gene054459:CDS |
| GAATATTGTCAATATTGACA+TGG | 0.613834 | 6.2:+12490484 | None:intergenic |
| AAAACAAAATCACCTTTGCA+AGG | 0.615926 | 6.2:+12491899 | None:intergenic |
| CGAGTGGTTGCAACAGTGAG+TGG | 0.616249 | 6.2:-12492851 | MS.gene054459:CDS |
| AAAATGCTTACTAATATAAG+CGG | 0.616285 | 6.2:+12488536 | None:intergenic |
| CCACCTATACTGTCAAGGAA+AGG | 0.618189 | 6.2:-12490690 | MS.gene054459:CDS |
| AATATTCAAGAAAATAGTGA+AGG | 0.623793 | 6.2:-12490468 | MS.gene054459:CDS |
| TCCAAGAATAAAGTGGTCAG+AGG | 0.625433 | 6.2:-12491252 | MS.gene054459:CDS |
| GCAAATTACACAAGCACCTG+AGG | 0.629592 | 6.2:+12488696 | None:intergenic |
| TGACAACTCATTTGAAGTAG+GGG | 0.631458 | 6.2:+12490233 | None:intergenic |
| TGTGAGAAATGATGGTGAAG+TGG | 0.641159 | 6.2:-12490604 | MS.gene054459:CDS |
| AAGACTGTATAAAGGAAGGA+AGG | 0.641299 | 6.2:-12491944 | MS.gene054459:CDS |
| TCTGAGGTAGTGTAATCACA+TGG | 0.651511 | 6.2:+12489145 | None:intergenic |
| GGTGCTTGTGTAATTTGCGG+TGG | 0.655328 | 6.2:-12488691 | MS.gene054459:CDS |
| CATGTGATATTGTGTCCGAA+AGG | 0.657843 | 6.2:-12491224 | MS.gene054459:CDS |
| TTTACGAGAATGTCTAGCCG+AGG | 0.658425 | 6.2:+12490638 | None:intergenic |
| CAGATTTCAGTTCAACAAGG+GGG | 0.664303 | 6.2:-12490194 | MS.gene054459:CDS |
| AAAATTCTCCGATGGTGATG+TGG | 0.665179 | 6.2:-12490274 | MS.gene054459:CDS |
| TACAGTCTTCAACCCAACGG+TGG | 0.666109 | 6.2:+12491958 | None:intergenic |
| TTATACAGTCTTCAACCCAA+CGG | 0.666643 | 6.2:+12491955 | None:intergenic |
| ACAGATTTCAGTTCAACAAG+GGG | 0.667970 | 6.2:-12490195 | MS.gene054459:CDS |
| ATAATACTGGCCTTGCACAA+AGG | 0.674795 | 6.2:+12489229 | None:intergenic |
| AAATACTGACTTCAGTTCCG+GGG | 0.690610 | 6.2:-12491199 | MS.gene054459:CDS |
| AATATTTATAGAAAGCAATG+GGG | 0.692135 | 6.2:-12489267 | MS.gene054459:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATAAATATAGTTTAATA+TGG | + | chr6.2:12492340-12492359 | None:intergenic | 10.0% |
| !! | GTATAATAATAAAAAGATAT+TGG | + | chr6.2:12491307-12491326 | None:intergenic | 10.0% |
| !! | TATTAAACTATATTTATTGT+CGG | - | chr6.2:12492340-12492359 | MS.gene054459:intron | 10.0% |
| !!! | CTACATATATTTTTAATTTA+CGG | + | chr6.2:12489421-12489440 | None:intergenic | 10.0% |
| !!! | TACATATATTTTTAATTTAC+GGG | + | chr6.2:12489420-12489439 | None:intergenic | 10.0% |
| !! | ATAAACATAATTCATTTACT+TGG | + | chr6.2:12490619-12490638 | None:intergenic | 15.0% |
| !! | ATCTAATAAGTATAAACATT+TGG | + | chr6.2:12489190-12489209 | None:intergenic | 15.0% |
| !! | TTATGTATTTAACTAATTAC+AGG | - | chr6.2:12489266-12489285 | MS.gene054459:intron | 15.0% |
| !!! | AAATGGAATTTTATTTTAAC+TGG | - | chr6.2:12489241-12489260 | MS.gene054459:CDS | 15.0% |
| !!! | TAACTTATTATTATTTTCAG+TGG | - | chr6.2:12490070-12490089 | MS.gene054459:intron | 15.0% |
| !!! | TATATTTTATGTTATGTGAT+GGG | - | chr6.2:12489879-12489898 | MS.gene054459:intron | 15.0% |
| !!! | TTTGAAAACAAATTCTAAAA+AGG | + | chr6.2:12491580-12491599 | None:intergenic | 15.0% |
| !!! | TTTTGTGAATGATAAATATT+TGG | - | chr6.2:12492442-12492461 | MS.gene054459:intron | 15.0% |
| !! | AAAAGAAAAAAGTTGAAGAA+AGG | - | chr6.2:12488851-12488870 | MS.gene054459:intron | 20.0% |
| !! | AAAGAAAAAAGTTGAAGAAA+GGG | - | chr6.2:12488852-12488871 | MS.gene054459:intron | 20.0% |
| !! | AATAGGTTATGGTTTATATA+TGG | - | chr6.2:12492013-12492032 | MS.gene054459:CDS | 20.0% |
| !! | AATATTCAAGAAAATAGTGA+AGG | - | chr6.2:12490935-12490954 | MS.gene054459:intron | 20.0% |
| !! | AATATTTATAGAAAGCAATG+GGG | - | chr6.2:12492136-12492155 | MS.gene054459:intron | 20.0% |
| !! | AATTGTTTGATAAAAACTGA+TGG | + | chr6.2:12491654-12491673 | None:intergenic | 20.0% |
| !! | ATTGTATTAGTTGAATTGAA+TGG | - | chr6.2:12491532-12491551 | MS.gene054459:intron | 20.0% |
| !! | ATTTAACTATTCAATTGTTG+TGG | - | chr6.2:12488700-12488719 | MS.gene054459:CDS | 20.0% |
| !! | CAATATTTATAGAAAGCAAT+GGG | - | chr6.2:12492135-12492154 | MS.gene054459:intron | 20.0% |
| !! | CAATTGTTGAATAACATATT+AGG | + | chr6.2:12492566-12492585 | None:intergenic | 20.0% |
| !! | CTATAAACAAAGTTGAATTT+CGG | + | chr6.2:12491054-12491073 | None:intergenic | 20.0% |
| !! | GACTATACTAATCAATTAAT+AGG | + | chr6.2:12491337-12491356 | None:intergenic | 20.0% |
| !! | TCAATATTTATAGAAAGCAA+TGG | - | chr6.2:12492134-12492153 | MS.gene054459:intron | 20.0% |
| !! | TCAATTCAACTAATACAATA+AGG | + | chr6.2:12491531-12491550 | None:intergenic | 20.0% |
| !! | TGCTTAAATCCAAAATTATA+GGG | + | chr6.2:12490832-12490851 | None:intergenic | 20.0% |
| !! | TGGTTATACAAATACAAATA+TGG | - | chr6.2:12491552-12491571 | MS.gene054459:intron | 20.0% |
| !!! | AAACTGAAATTTACTTTTAC+AGG | - | chr6.2:12489734-12489753 | MS.gene054459:intron | 20.0% |
| !!! | GTATATTTTATGTTATGTGA+TGG | - | chr6.2:12489878-12489897 | MS.gene054459:intron | 20.0% |
| !!! | TAAATAACAAGTTGAGAAAA+TGG | + | chr6.2:12490493-12490512 | None:intergenic | 20.0% |
| !!! | TATTTAACAACACTGATTAT+AGG | - | chr6.2:12489059-12489078 | MS.gene054459:intron | 20.0% |
| !!! | TTATAAAATCCAATGCATTT+TGG | + | chr6.2:12489574-12489593 | None:intergenic | 20.0% |
| !!! | TTTTAATCCCATAAATAGAA+GGG | - | chr6.2:12490555-12490574 | MS.gene054459:CDS | 20.0% |
| !!! | TTTTAATTTTCCCTTAGAAT+AGG | - | chr6.2:12491996-12492015 | MS.gene054459:CDS | 20.0% |
| !!! | TTTTGAATGAATTTGAAAGT+TGG | - | chr6.2:12491379-12491398 | MS.gene054459:intron | 20.0% |
| !!! | TTTTTAATCCCATAAATAGA+AGG | - | chr6.2:12490554-12490573 | MS.gene054459:CDS | 20.0% |
| ! | AAAATGACATCTATAGAGTA+CGG | + | chr6.2:12492084-12492103 | None:intergenic | 25.0% |
| ! | AACAGAAACCAAATTACTAT+TGG | + | chr6.2:12491464-12491483 | None:intergenic | 25.0% |
| ! | AAGAATTCATTCTTATTGCA+TGG | - | chr6.2:12492783-12492802 | MS.gene054459:CDS | 25.0% |
| ! | AGAATTATACCAAAATGCAT+TGG | - | chr6.2:12489562-12489581 | MS.gene054459:intron | 25.0% |
| ! | AGTCAAATTAGAACTAACAA+TGG | - | chr6.2:12490977-12490996 | MS.gene054459:intron | 25.0% |
| ! | ATAAACCATAACCTATTCTA+AGG | + | chr6.2:12492010-12492029 | None:intergenic | 25.0% |
| ! | ATGATCAATTATATCAGCTA+TGG | - | chr6.2:12491725-12491744 | MS.gene054459:intron | 25.0% |
| ! | ATTCTTTCATTCTAACATGA+AGG | - | chr6.2:12492470-12492489 | MS.gene054459:intron | 25.0% |
| ! | GAATATTGTCAATATTGACA+TGG | + | chr6.2:12490922-12490941 | None:intergenic | 25.0% |
| ! | GAATTATGTTTATGTTCTTC+TGG | - | chr6.2:12490626-12490645 | MS.gene054459:CDS | 25.0% |
| ! | GACCTTATTAACAAATAAGA+CGG | - | chr6.2:12489960-12489979 | MS.gene054459:intron | 25.0% |
| ! | GATGAATGAGTAAAAATCAT+AGG | - | chr6.2:12488807-12488826 | MS.gene054459:intron | 25.0% |
| ! | GCTTAAATCCAAAATTATAG+GGG | + | chr6.2:12490831-12490850 | None:intergenic | 25.0% |
| ! | GGTATAATTCTACGATAATT+GGG | + | chr6.2:12489553-12489572 | None:intergenic | 25.0% |
| ! | GTGCTTAAATCCAAAATTAT+AGG | + | chr6.2:12490833-12490852 | None:intergenic | 25.0% |
| ! | GTTATTTATGCATGTTCTTT+AGG | - | chr6.2:12490505-12490524 | MS.gene054459:CDS | 25.0% |
| ! | TAAACCATAACCTATTCTAA+GGG | + | chr6.2:12492009-12492028 | None:intergenic | 25.0% |
| ! | TAACAAAATCTCACTTTATG+AGG | - | chr6.2:12488754-12488773 | MS.gene054459:intron | 25.0% |
| ! | TCATTCAACCAATAGTAATT+TGG | - | chr6.2:12491453-12491472 | MS.gene054459:intron | 25.0% |
| ! | TGGTATAATTCTACGATAAT+TGG | + | chr6.2:12489554-12489573 | None:intergenic | 25.0% |
| ! | TTTCATGATCTTCATAATAC+TGG | + | chr6.2:12492190-12492209 | None:intergenic | 25.0% |
| !! | AATCTTTACTGTACACATTT+TGG | - | chr6.2:12492617-12492636 | MS.gene054459:intron | 25.0% |
| !! | TAATCAGTGTTGTTAAATAG+AGG | + | chr6.2:12489058-12489077 | None:intergenic | 25.0% |
| !! | TCATTTAAGTTTCATCATCA+TGG | + | chr6.2:12491829-12491848 | None:intergenic | 25.0% |
| !! | TGTCTCTAAAAAAATTTCCT+TGG | + | chr6.2:12492503-12492522 | None:intergenic | 25.0% |
| !! | TTCAAAAGTGTGTAGTTATA+GGG | - | chr6.2:12491594-12491613 | MS.gene054459:intron | 25.0% |
| !! | TTTCAAAAGTGTGTAGTTAT+AGG | - | chr6.2:12491593-12491612 | MS.gene054459:intron | 25.0% |
| !!! | AACCGTCTTATTTGTTAATA+AGG | + | chr6.2:12489965-12489984 | None:intergenic | 25.0% |
| !!! | AATAAGACGGTTATTTTGTT+TGG | - | chr6.2:12489973-12489992 | MS.gene054459:intron | 25.0% |
| !!! | TTTTTTTGTAGTTTGAGGTT+CGG | - | chr6.2:12489930-12489949 | MS.gene054459:intron | 25.0% |
| AAAACAAAATCACCTTTGCA+AGG | + | chr6.2:12489507-12489526 | None:intergenic | 30.0% | |
| AAGATTCTTATACCTTGCAA+AGG | - | chr6.2:12489492-12489511 | MS.gene054459:intron | 30.0% | |
| AATATCGTGTTTCAATGTTC+AGG | - | chr6.2:12489358-12489377 | MS.gene054459:intron | 30.0% | |
| AATTGGGATACAAAAATCTG+AGG | + | chr6.2:12492277-12492296 | None:intergenic | 30.0% | |
| ACTGGAACTTCCATTAATAA+TGG | + | chr6.2:12490109-12490128 | None:intergenic | 30.0% | |
| AGACAGCAGATTATAACAAA+GGG | + | chr6.2:12490019-12490038 | None:intergenic | 30.0% | |
| AGATTCTTCTTTACTGAAAC+AGG | - | chr6.2:12490249-12490268 | MS.gene054459:CDS | 30.0% | |
| AGGAAAGGTAAAAGAAATAG+AGG | - | chr6.2:12490728-12490747 | MS.gene054459:intron | 30.0% | |
| ATCCACACAAACGTAATAAA+TGG | - | chr6.2:12489224-12489243 | MS.gene054459:CDS | 30.0% | |
| ATCTGCTGTCTAGTAAAATT+TGG | - | chr6.2:12490028-12490047 | MS.gene054459:intron | 30.0% | |
| CTATGTTGTTAGTGATGAAT+TGG | - | chr6.2:12488785-12488804 | MS.gene054459:intron | 30.0% | |
| CTGGAAATTCTTGATCAATT+GGG | + | chr6.2:12492293-12492312 | None:intergenic | 30.0% | |
| GGAACTTTGAATCAAATATG+TGG | - | chr6.2:12492034-12492053 | MS.gene054459:intron | 30.0% | |
| GTGTGAATTTAAATGACTGT+TGG | - | chr6.2:12489653-12489672 | MS.gene054459:intron | 30.0% | |
| GTTGAAACTCGAAAATGTAT+TGG | + | chr6.2:12491879-12491898 | None:intergenic | 30.0% | |
| TACCTTATCCAAGAATAAAG+TGG | - | chr6.2:12490144-12490163 | MS.gene054459:CDS | 30.0% | |
| TAGACAGCAGATTATAACAA+AGG | + | chr6.2:12490020-12490039 | None:intergenic | 30.0% | |
| TCTGGAAATTCTTGATCAAT+TGG | + | chr6.2:12492294-12492313 | None:intergenic | 30.0% | |
| TGTTATCCTTTCATTCTTAC+TGG | - | chr6.2:12491412-12491431 | MS.gene054459:intron | 30.0% | |
| TTATCGTAACCGCTTATATT+AGG | - | chr6.2:12492858-12492877 | MS.gene054459:CDS | 30.0% | |
| TTCCATTTATTACGTTTGTG+TGG | + | chr6.2:12489229-12489248 | None:intergenic | 30.0% | |
| TTGTTAAATAGAGGTTACAG+TGG | + | chr6.2:12489049-12489068 | None:intergenic | 30.0% | |
| ! | AACAAAATCCTTTTAGCACT+AGG | + | chr6.2:12491954-12491973 | None:intergenic | 30.0% |
| ! | ATGACAACTCATTTGAAGTA+GGG | + | chr6.2:12491174-12491193 | None:intergenic | 30.0% |
| ! | GTTTTTCCAGTAAGAATGAA+AGG | + | chr6.2:12491421-12491440 | None:intergenic | 30.0% |
| ! | TTAACAACACTGATTATAGG+AGG | - | chr6.2:12489062-12489081 | MS.gene054459:intron | 30.0% |
| ! | TTCACAAAATTAAAAAGCGC+AGG | + | chr6.2:12492431-12492450 | None:intergenic | 30.0% |
| ! | TTGGTTTCTGTTTTCTCATT+GGG | - | chr6.2:12491472-12491491 | MS.gene054459:intron | 30.0% |
| ! | TTTTCCCTTAGAATAGGTTA+TGG | - | chr6.2:12492002-12492021 | MS.gene054459:CDS | 30.0% |
| !! | TTTGGTTTCTGTTTTCTCAT+TGG | - | chr6.2:12491471-12491490 | MS.gene054459:intron | 30.0% |
| !!! | ACTTTCCTTTTTTCAAGCAT+GGG | - | chr6.2:12490675-12490694 | MS.gene054459:CDS | 30.0% |
| !!! | GAAGGTTTTTTTGTAGTTTG+AGG | - | chr6.2:12489925-12489944 | MS.gene054459:intron | 30.0% |
| !!! | GCTGTCTTTTTTCTATCAAA+AGG | + | chr6.2:12489608-12489627 | None:intergenic | 30.0% |
| !!! | GCTTAATTTTTTCTCATTGG+TGG | - | chr6.2:12489143-12489162 | MS.gene054459:CDS | 30.0% |
| !!! | GTGGCTTAATTTTTTCTCAT+TGG | - | chr6.2:12489140-12489159 | MS.gene054459:CDS | 30.0% |
| !!! | TACTTTCCTTTTTTCAAGCA+TGG | - | chr6.2:12490674-12490693 | MS.gene054459:CDS | 30.0% |
| !!! | TTTTGTTTTTCATGCATCCA+GGG | - | chr6.2:12491253-12491272 | MS.gene054459:CDS | 30.0% |
| !!! | TTTTTGTTTTTCATGCATCC+AGG | - | chr6.2:12491252-12491271 | MS.gene054459:CDS | 30.0% |
| AACAATTGAAAAGCAGCTAG+AGG | + | chr6.2:12490305-12490324 | None:intergenic | 35.0% | |
| AACATGAAGGATGAAAACCA+AGG | - | chr6.2:12492483-12492502 | MS.gene054459:intron | 35.0% | |
| AAGACTGTATAAAGGAAGGA+AGG | - | chr6.2:12489459-12489478 | MS.gene054459:intron | 35.0% | |
| ACAATTGAAAAGCAGCTAGA+GGG | + | chr6.2:12490304-12490323 | None:intergenic | 35.0% | |
| ACAGATTTCAGTTCAACAAG+GGG | - | chr6.2:12491208-12491227 | MS.gene054459:CDS | 35.0% | |
| ACATTCTCGTAAAGGAAGAA+GGG | - | chr6.2:12490775-12490794 | MS.gene054459:intron | 35.0% | |
| ACTAACAATGGAAGTTCAGA+TGG | - | chr6.2:12490989-12491008 | MS.gene054459:intron | 35.0% | |
| AGAAGTAGGGCCATTATTAA+TGG | - | chr6.2:12490096-12490115 | MS.gene054459:intron | 35.0% | |
| AGGAAATGATGTTAGTACCT+CGG | - | chr6.2:12490748-12490767 | MS.gene054459:intron | 35.0% | |
| AGTTGTCATGTGTCATATGT+TGG | - | chr6.2:12491185-12491204 | MS.gene054459:CDS | 35.0% | |
| ATAGAAAAAAGACAGCACGA+TGG | - | chr6.2:12489612-12489631 | MS.gene054459:intron | 35.0% | |
| ATCAGAATTCAGAACATGCT+TGG | + | chr6.2:12490379-12490398 | None:intergenic | 35.0% | |
| ATTAAGCTCATTTCGCATTC+CGG | - | chr6.2:12488603-12488622 | MS.gene054459:CDS | 35.0% | |
| ATTATCAACCACATCACCAT+CGG | + | chr6.2:12491140-12491159 | None:intergenic | 35.0% | |
| ATTTCCAGACAATAGCTTAG+AGG | - | chr6.2:12492305-12492324 | MS.gene054459:intron | 35.0% | |
| CAATTCTCAAGTAGATCTTC+AGG | + | chr6.2:12492745-12492764 | None:intergenic | 35.0% | |
| GAACATTGCATATAACGACT+GGG | + | chr6.2:12490344-12490363 | None:intergenic | 35.0% | |
| GACAGATTTCAGTTCAACAA+GGG | - | chr6.2:12491207-12491226 | MS.gene054459:CDS | 35.0% | |
| GACCACTTTATTCTTGGATA+AGG | + | chr6.2:12490149-12490168 | None:intergenic | 35.0% | |
| GCAAGGTATAAGAATCTTCT+GGG | + | chr6.2:12489490-12489509 | None:intergenic | 35.0% | |
| GGCACATCAGAAATCTAAAA+AGG | + | chr6.2:12491633-12491652 | None:intergenic | 35.0% | |
| GTAATCACATGGAATTGTCT+GGG | + | chr6.2:12492250-12492269 | None:intergenic | 35.0% | |
| GTTGAAGACTGTATAAAGGA+AGG | - | chr6.2:12489455-12489474 | MS.gene054459:intron | 35.0% | |
| TAGAAAAAAGACAGCACGAT+GGG | - | chr6.2:12489613-12489632 | MS.gene054459:intron | 35.0% | |
| TGAACATTGCATATAACGAC+TGG | + | chr6.2:12490345-12490364 | None:intergenic | 35.0% | |
| TGCAAGGTATAAGAATCTTC+TGG | + | chr6.2:12489491-12489510 | None:intergenic | 35.0% | |
| TGCTCAGTGTAGTATTTAAG+TGG | - | chr6.2:12489121-12489140 | MS.gene054459:CDS | 35.0% | |
| TGTAACGCCCTTCTATTTAT+GGG | + | chr6.2:12490565-12490584 | None:intergenic | 35.0% | |
| TGTAATCACATGGAATTGTC+TGG | + | chr6.2:12492251-12492270 | None:intergenic | 35.0% | |
| TTACCTTTCCTTGACAGTAT+AGG | + | chr6.2:12490719-12490738 | None:intergenic | 35.0% | |
| TTACTGAAACAGGTAACAAC+AGG | - | chr6.2:12490259-12490278 | MS.gene054459:CDS | 35.0% | |
| TTATACAGTCTTCAACCCAA+CGG | + | chr6.2:12489451-12489470 | None:intergenic | 35.0% | |
| TTGTAACGCCCTTCTATTTA+TGG | + | chr6.2:12490566-12490585 | None:intergenic | 35.0% | |
| ! | AAATCCTTTTAGCACTAGGT+TGG | + | chr6.2:12491950-12491969 | None:intergenic | 35.0% |
| ! | ATTTTCAGTGGACAAGAAGT+AGG | - | chr6.2:12490082-12490101 | MS.gene054459:intron | 35.0% |
| ! | CATGACAACTCATTTGAAGT+AGG | + | chr6.2:12491175-12491194 | None:intergenic | 35.0% |
| ! | GAAGTCAGTATTTTGCCTTT+CGG | + | chr6.2:12490197-12490216 | None:intergenic | 35.0% |
| ! | GCTATGTTTCTATTGCATAG+CGG | + | chr6.2:12489025-12489044 | None:intergenic | 35.0% |
| ! | GTTTTCTCATTGGGATTTTG+AGG | - | chr6.2:12491481-12491500 | MS.gene054459:intron | 35.0% |
| ! | TGACAACTCATTTGAAGTAG+GGG | + | chr6.2:12491173-12491192 | None:intergenic | 35.0% |
| ! | TGTTTTCTTTGCATAGCTGA+TGG | - | chr6.2:12491679-12491698 | MS.gene054459:intron | 35.0% |
| ! | TTTTCAGTGGACAAGAAGTA+GGG | - | chr6.2:12490083-12490102 | MS.gene054459:intron | 35.0% |
| !! | AAAATACTGACTTCAGTTCC+GGG | - | chr6.2:12490203-12490222 | MS.gene054459:CDS | 35.0% |
| !! | AGTATAGTCTTGTCTTATGC+TGG | - | chr6.2:12491348-12491367 | MS.gene054459:intron | 35.0% |
| !! | CAAAATACTGACTTCAGTTC+CGG | - | chr6.2:12490202-12490221 | MS.gene054459:CDS | 35.0% |
| !! | TTGGGTTGAAGACTGTATAA+AGG | - | chr6.2:12489451-12489470 | MS.gene054459:intron | 35.0% |
| !! | TTTACTGTACACATTTTGGC+TGG | - | chr6.2:12492621-12492640 | MS.gene054459:intron | 35.0% |
| !!! | CTTTCCTTTTTTCAAGCATG+GGG | - | chr6.2:12490676-12490695 | MS.gene054459:CDS | 35.0% |
| AATAGTGAAGGACTTGATGC+TGG | - | chr6.2:12490947-12490966 | MS.gene054459:intron | 40.0% | |
| ACAATCCTGTAGGTGCATTA+TGG | - | chr6.2:12490582-12490601 | MS.gene054459:CDS | 40.0% | |
| ACCAGCTTTGCGAAATAGAT+AGG | - | chr6.2:12490858-12490877 | MS.gene054459:intron | 40.0% | |
| AGAAGGGTTGTGAGAAATGA+TGG | - | chr6.2:12490791-12490810 | MS.gene054459:intron | 40.0% | |
| AGGTGCATTATGGTATACGA+TGG | - | chr6.2:12490592-12490611 | MS.gene054459:CDS | 40.0% | |
| ATATGTAGTCAACCACCGTT+GGG | - | chr6.2:12489433-12489452 | MS.gene054459:intron | 40.0% | |
| ATGAGTGCTATAGGCTATAG+TGG | - | chr6.2:12488936-12488955 | MS.gene054459:intron | 40.0% | |
| CAATATTGACATGGCGAGAA+AGG | + | chr6.2:12490913-12490932 | None:intergenic | 40.0% | |
| CAATTGAAAAGCAGCTAGAG+GGG | + | chr6.2:12490303-12490322 | None:intergenic | 40.0% | |
| CAGATTTCAGTTCAACAAGG+GGG | - | chr6.2:12491209-12491228 | MS.gene054459:CDS | 40.0% | |
| CATACCTCTAAGCTATTGTC+TGG | + | chr6.2:12492312-12492331 | None:intergenic | 40.0% | |
| CATATCCACCTATACTGTCA+AGG | - | chr6.2:12490708-12490727 | MS.gene054459:CDS | 40.0% | |
| CATGACAACAAAAACCAGTG+AGG | + | chr6.2:12489852-12489871 | None:intergenic | 40.0% | |
| CATGTGATATTGTGTCCGAA+AGG | - | chr6.2:12490179-12490198 | MS.gene054459:CDS | 40.0% | |
| GACATTCTCGTAAAGGAAGA+AGG | - | chr6.2:12490774-12490793 | MS.gene054459:intron | 40.0% | |
| GGACAGATTTCAGTTCAACA+AGG | - | chr6.2:12491206-12491225 | MS.gene054459:CDS | 40.0% | |
| GTACTTGCTTGAACATTGAC+TGG | + | chr6.2:12490127-12490146 | None:intergenic | 40.0% | |
| GTATACCATAATGCACCTAC+AGG | + | chr6.2:12490590-12490609 | None:intergenic | 40.0% | |
| GTCGAAGTCAATTACTCATC+TGG | - | chr6.2:12488647-12488666 | MS.gene054459:CDS | 40.0% | |
| GTTTCAATGTTCAGGTGTGT+TGG | - | chr6.2:12489366-12489385 | MS.gene054459:intron | 40.0% | |
| GTTTCCAACCTAGTGCTAAA+AGG | - | chr6.2:12491943-12491962 | MS.gene054459:CDS | 40.0% | |
| TAGACGCATACAACTCAATG+TGG | + | chr6.2:12489096-12489115 | None:intergenic | 40.0% | |
| TATATGTAGTCAACCACCGT+TGG | - | chr6.2:12489432-12489451 | MS.gene054459:intron | 40.0% | |
| TCAGGTGCTTGTGTAATTTG+CGG | - | chr6.2:12492709-12492728 | MS.gene054459:intron | 40.0% | |
| TCCAAGAATAAAGTGGTCAG+AGG | - | chr6.2:12490151-12490170 | MS.gene054459:CDS | 40.0% | |
| TCCTCTGACCACTTTATTCT+TGG | + | chr6.2:12490155-12490174 | None:intergenic | 40.0% | |
| TCTACTGATGTTTGTGTCAG+AGG | + | chr6.2:12491088-12491107 | None:intergenic | 40.0% | |
| TGATGTTTGTGTCAGAGGAA+GGG | + | chr6.2:12491083-12491102 | None:intergenic | 40.0% | |
| TTCAAACTGTCCTTTGTGCA+AGG | - | chr6.2:12492164-12492183 | MS.gene054459:intron | 40.0% | |
| ! | AAAATTCTCCGATGGTGATG+TGG | - | chr6.2:12491129-12491148 | MS.gene054459:intron | 40.0% |
| ! | ATTTTGCTTGTACAGTCCTC+AGG | - | chr6.2:12492691-12492710 | MS.gene054459:intron | 40.0% |
| ! | CTCAGCTTTCAAGTGATATG+TGG | - | chr6.2:12490432-12490451 | MS.gene054459:CDS | 40.0% |
| ! | GGTCTGTGGAATTTCTGTTT+TGG | - | chr6.2:12490225-12490244 | MS.gene054459:CDS | 40.0% |
| ! | TCTGAGGTAGTGTAATCACA+TGG | + | chr6.2:12492261-12492280 | None:intergenic | 40.0% |
| ! | TGTGAGAAATGATGGTGAAG+TGG | - | chr6.2:12490799-12490818 | MS.gene054459:intron | 40.0% |
| ! | TTTTTCATGCATCCAGGGTT+GGG | - | chr6.2:12491258-12491277 | MS.gene054459:CDS | 40.0% |
| !! | AAATACTGACTTCAGTTCCG+GGG | - | chr6.2:12490204-12490223 | MS.gene054459:CDS | 40.0% |
| !! | ATAATACTGGCCTTGCACAA+AGG | + | chr6.2:12492177-12492196 | None:intergenic | 40.0% |
| !! | GGAGTATGCTTTTTGATCAG+TGG | + | chr6.2:12492229-12492248 | None:intergenic | 40.0% |
| !!! | GTTTTGCTTTGAGTTGTGTC+TGG | - | chr6.2:12489708-12489727 | MS.gene054459:intron | 40.0% |
| !!! | TGGTGGCTAGCTTTTGAAAA+GGG | - | chr6.2:12489160-12489179 | MS.gene054459:CDS | 40.0% |
| !!! | TTGGTGGCTAGCTTTTGAAA+AGG | - | chr6.2:12489159-12489178 | MS.gene054459:CDS | 40.0% |
| AACAGAAATTCCACAGACCC+CGG | + | chr6.2:12490224-12490243 | None:intergenic | 45.0% | |
| ACCACCTTGCTGACATTGTT+GGG | - | chr6.2:12491505-12491524 | MS.gene054459:intron | 45.0% | |
| ACCAGTGAGGTTTAACTCGT+AGG | + | chr6.2:12489839-12489858 | None:intergenic | 45.0% | |
| ATGGACATGCACTTCTTGCA+AGG | - | chr6.2:12492822-12492841 | MS.gene054459:CDS | 45.0% | |
| CAGGTGTGTTGGAAGTTTGA+AGG | - | chr6.2:12489377-12489396 | MS.gene054459:intron | 45.0% | |
| CCACCTATACTGTCAAGGAA+AGG | - | chr6.2:12490713-12490732 | MS.gene054459:CDS | 45.0% | |
| CCTATAGCACTCATGTGTAG+CGG | + | chr6.2:12488930-12488949 | None:intergenic | 45.0% | |
| CCTTTCCTTGACAGTATAGG+TGG | + | chr6.2:12490716-12490735 | None:intergenic | 45.0% | |
| CGACATATCTCCAACGTAAC+TGG | + | chr6.2:12488631-12488650 | None:intergenic | 45.0% | |
| CTGATGTTTGTGTCAGAGGA+AGG | + | chr6.2:12491084-12491103 | None:intergenic | 45.0% | |
| GACTCCCCATGCTTGAAAAA+AGG | + | chr6.2:12490683-12490702 | None:intergenic | 45.0% | |
| GATGTTTGTGTCAGAGGAAG+GGG | + | chr6.2:12491082-12491101 | None:intergenic | 45.0% | |
| GATTGAATCGCTCGAGTTCA+CGG | + | chr6.2:12488581-12488600 | None:intergenic | 45.0% | |
| GCAAATTACACAAGCACCTG+AGG | + | chr6.2:12492710-12492729 | None:intergenic | 45.0% | |
| GCCTATCTATTTCGCAAAGC+TGG | + | chr6.2:12490862-12490881 | None:intergenic | 45.0% | |
| GCTGCTGAAAAATTCTCCGA+TGG | - | chr6.2:12491121-12491140 | MS.gene054459:intron | 45.0% | |
| TCGGCTAGACATTCTCGTAA+AGG | - | chr6.2:12490767-12490786 | MS.gene054459:intron | 45.0% | |
| TTGCATAGCTGATGGCACAT+GGG | - | chr6.2:12491687-12491706 | MS.gene054459:intron | 45.0% | |
| TTTACGAGAATGTCTAGCCG+AGG | + | chr6.2:12490768-12490787 | None:intergenic | 45.0% | |
| TTTGCATAGCTGATGGCACA+TGG | - | chr6.2:12491686-12491705 | MS.gene054459:intron | 45.0% | |
| ! | AAATGATGGTGAAGTGGCGA+TGG | - | chr6.2:12490805-12490824 | MS.gene054459:intron | 45.0% |
| ! | CAGTTCAACAAGGGGGATTT+TGG | - | chr6.2:12491216-12491235 | MS.gene054459:CDS | 45.0% |
| ! | CTTGTGTAATTTGCGGTGGT+CGG | - | chr6.2:12492716-12492735 | MS.gene054459:intron | 45.0% |
| ! | GTTTTTCATGCATCCAGGGT+TGG | - | chr6.2:12491257-12491276 | MS.gene054459:CDS | 45.0% |
| ! | TTGCAAGAAGTGCATGTCCA+TGG | + | chr6.2:12492823-12492842 | None:intergenic | 45.0% |
| ! | TTGTGTAATTTGCGGTGGTC+GGG | - | chr6.2:12492717-12492736 | MS.gene054459:intron | 45.0% |
| !! | GGAGAATTTTTCAGCAGCAC+TGG | + | chr6.2:12491119-12491138 | None:intergenic | 45.0% |
| !! | ATATTAAAAAAATAATAACA+AGG | + | chr6.2:12492371-12492390 | None:intergenic | 5.0% |
| AAAGCAGCTAGAGGGGAACA+TGG | + | chr6.2:12490296-12490315 | None:intergenic | 50.0% | |
| AACTCGTAGCTGATGGCACA+TGG | - | chr6.2:12491753-12491772 | MS.gene054459:intron | 50.0% | |
| AAGGCCCAACAATGTCAGCA+AGG | + | chr6.2:12491512-12491531 | None:intergenic | 50.0% | |
| ACTCGTAGCTGATGGCACAT+GGG | - | chr6.2:12491754-12491773 | MS.gene054459:intron | 50.0% | |
| ATCTCCAACGTAACTGGCAC+CGG | + | chr6.2:12488625-12488644 | None:intergenic | 50.0% | |
| ATGTCCATGGTCGCAATGGA+GGG | + | chr6.2:12492810-12492829 | None:intergenic | 50.0% | |
| CACCACCTTGCTGACATTGT+TGG | - | chr6.2:12491504-12491523 | MS.gene054459:intron | 50.0% | |
| CCGCTACACATGAGTGCTAT+AGG | - | chr6.2:12488927-12488946 | MS.gene054459:intron | 50.0% | |
| GCCTACGAGTTAAACCTCAC+TGG | - | chr6.2:12489835-12489854 | MS.gene054459:intron | 50.0% | |
| GCTAGATGTAGCTGCAGCTT+CGG | + | chr6.2:12490891-12490910 | None:intergenic | 50.0% | |
| GGCACAAAACTCGTAGCTGA+TGG | - | chr6.2:12491746-12491765 | MS.gene054459:intron | 50.0% | |
| TACAGTCTTCAACCCAACGG+TGG | + | chr6.2:12489448-12489467 | None:intergenic | 50.0% | |
| ! | GGCGATGGCCCCTATAATTT+TGG | - | chr6.2:12490820-12490839 | MS.gene054459:intron | 50.0% |
| ! | GGTGCTTGTGTAATTTGCGG+TGG | - | chr6.2:12492712-12492731 | MS.gene054459:intron | 50.0% |
| !! | ATGTGATGGGCTTCTCTGTG+TGG | - | chr6.2:12489892-12489911 | MS.gene054459:intron | 50.0% |
| !! | CTGTGTGGAGAGTTTGCTGA+AGG | - | chr6.2:12489907-12489926 | MS.gene054459:intron | 50.0% |
| !! | GAAGGGCGTTACAATCCTGT+AGG | - | chr6.2:12490572-12490591 | MS.gene054459:CDS | 50.0% |
| !!! | ACAAGGGGGATTTTGGAGTG+CGG | - | chr6.2:12491223-12491242 | MS.gene054459:CDS | 50.0% |
| CATGTCCATGGTCGCAATGG+AGG | + | chr6.2:12492811-12492830 | None:intergenic | 55.0% | |
| CGAGTGGTTGCAACAGTGAG+TGG | - | chr6.2:12488552-12488571 | MS.gene054459:CDS | 55.0% | |
| GCCCAACAATGTCAGCAAGG+TGG | + | chr6.2:12491509-12491528 | None:intergenic | 55.0% | |
| GTGCATGTCCATGGTCGCAA+TGG | + | chr6.2:12492814-12492833 | None:intergenic | 55.0% | |
| ! | CATTCCGGTGCCAGTTACGT+TGG | - | chr6.2:12488618-12488637 | MS.gene054459:CDS | 55.0% |
| CTCTGCGATCAACCCAACCC+TGG | + | chr6.2:12491273-12491292 | None:intergenic | 60.0% | |
| GACTTCAGTTCCGGGGTCTG+TGG | - | chr6.2:12490211-12490230 | MS.gene054459:CDS | 60.0% | |
| TGGACCCTCCATTGCGACCA+TGG | - | chr6.2:12492803-12492822 | MS.gene054459:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.2 | gene | 12488546 | 12492879 | 12488546 | ID=MS.gene054459 |
| chr6.2 | mRNA | 12488546 | 12492879 | 12488546 | ID=MS.gene054459.t1;Parent=MS.gene054459 |
| chr6.2 | exon | 12492757 | 12492879 | 12492757 | ID=MS.gene054459.t1.exon1;Parent=MS.gene054459.t1 |
| chr6.2 | CDS | 12492757 | 12492879 | 12492757 | ID=cds.MS.gene054459.t1;Parent=MS.gene054459.t1 |
| chr6.2 | exon | 12491912 | 12492045 | 12491912 | ID=MS.gene054459.t1.exon2;Parent=MS.gene054459.t1 |
| chr6.2 | CDS | 12491912 | 12492045 | 12491912 | ID=cds.MS.gene054459.t1;Parent=MS.gene054459.t1 |
| chr6.2 | exon | 12491155 | 12491335 | 12491155 | ID=MS.gene054459.t1.exon3;Parent=MS.gene054459.t1 |
| chr6.2 | CDS | 12491155 | 12491335 | 12491155 | ID=cds.MS.gene054459.t1;Parent=MS.gene054459.t1 |
| chr6.2 | exon | 12490134 | 12490733 | 12490134 | ID=MS.gene054459.t1.exon4;Parent=MS.gene054459.t1 |
| chr6.2 | CDS | 12490134 | 12490733 | 12490134 | ID=cds.MS.gene054459.t1;Parent=MS.gene054459.t1 |
| chr6.2 | exon | 12489099 | 12489278 | 12489099 | ID=MS.gene054459.t1.exon5;Parent=MS.gene054459.t1 |
| chr6.2 | CDS | 12489099 | 12489278 | 12489099 | ID=cds.MS.gene054459.t1;Parent=MS.gene054459.t1 |
| chr6.2 | exon | 12488546 | 12488719 | 12488546 | ID=MS.gene054459.t1.exon6;Parent=MS.gene054459.t1 |
| chr6.2 | CDS | 12488546 | 12488719 | 12488546 | ID=cds.MS.gene054459.t1;Parent=MS.gene054459.t1 |
| Gene Sequence |
| Protein sequence |
