Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49465.t1 | XP_003610744.2 | 97.1 | 756 | 22 | 0 | 2 | 757 | 23 | 778 | 0.00E+00 | 1450.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49465.t1 | F4JIF5 | 42.5 | 779 | 294 | 27 | 2 | 754 | 21 | 671 | 9.9e-122 | 439.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49465.t1 | G7K3P9 | 97.1 | 756 | 22 | 0 | 2 | 757 | 23 | 778 | 0.0e+00 | 1450.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene49465.t1 | TF | CPP |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052308 | MS.gene49465 | 0.812703 | 3.71E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene49465 | 0.807803 | 4.23E-50 | -1.69E-46 |
| MS.gene054459 | MS.gene49465 | 0.801982 | 6.96E-49 | -1.69E-46 |
| MS.gene054662 | MS.gene49465 | 0.806207 | 9.20E-50 | -1.69E-46 |
| MS.gene055578 | MS.gene49465 | 0.82236 | 2.47E-53 | -1.69E-46 |
| MS.gene055957 | MS.gene49465 | 0.803578 | 3.26E-49 | -1.69E-46 |
| MS.gene056041 | MS.gene49465 | 0.826313 | 2.91E-54 | -1.69E-46 |
| MS.gene057367 | MS.gene49465 | 0.806775 | 6.98E-50 | -1.69E-46 |
| MS.gene057458 | MS.gene49465 | 0.812108 | 5.00E-51 | -1.69E-46 |
| MS.gene059553 | MS.gene49465 | 0.802445 | 5.59E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene49465 | 0.800866 | 1.18E-48 | -1.69E-46 |
| MS.gene06093 | MS.gene49465 | 0.832003 | 1.21E-55 | -1.69E-46 |
| MS.gene061260 | MS.gene49465 | 0.809325 | 2.00E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene024852 | MS.gene49465 | PPI |
| MS.gene49466 | MS.gene49465 | PPI |
| MS.gene001040 | MS.gene49465 | PPI |
| MS.gene21825 | MS.gene49465 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49465.t1 | MTR_5g006530 | 96.962 | 757 | 23 | 0 | 1 | 757 | 22 | 778 | 0.0 | 1513 |
| MS.gene49465.t1 | MTR_5g006530 | 97.473 | 554 | 14 | 0 | 204 | 757 | 1 | 554 | 0.0 | 1117 |
| MS.gene49465.t1 | MTR_1g103230 | 31.905 | 677 | 290 | 19 | 1 | 613 | 15 | 584 | 1.66e-69 | 240 |
| MS.gene49465.t1 | MTR_1g012020 | 29.190 | 877 | 434 | 33 | 1 | 754 | 33 | 845 | 5.80e-68 | 241 |
| MS.gene49465.t1 | MTR_4g061370 | 90.625 | 96 | 9 | 0 | 130 | 225 | 272 | 367 | 2.10e-49 | 188 |
| MS.gene49465.t1 | MTR_6g087590 | 44.079 | 152 | 82 | 2 | 447 | 596 | 106 | 256 | 1.92e-30 | 127 |
| MS.gene49465.t1 | MTR_8g103320 | 41.447 | 152 | 83 | 2 | 450 | 596 | 61 | 211 | 1.29e-29 | 123 |
| MS.gene49465.t1 | MTR_3g110122 | 48.800 | 125 | 60 | 4 | 467 | 590 | 148 | 269 | 5.40e-27 | 117 |
| MS.gene49465.t1 | MTR_2g049305 | 47.321 | 112 | 49 | 2 | 427 | 532 | 28 | 135 | 5.18e-22 | 97.8 |
| MS.gene49465.t1 | MTR_1g103190 | 35.075 | 268 | 135 | 12 | 295 | 540 | 3 | 253 | 1.17e-19 | 89.7 |
| MS.gene49465.t1 | MTR_1g103180 | 58.333 | 60 | 25 | 0 | 455 | 514 | 161 | 220 | 3.78e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49465.t1 | AT3G22780 | 43.534 | 781 | 303 | 32 | 1 | 753 | 21 | 691 | 2.00e-157 | 473 |
| MS.gene49465.t1 | AT4G14770 | 44.487 | 780 | 279 | 31 | 1 | 754 | 1 | 652 | 6.88e-154 | 463 |
| MS.gene49465.t1 | AT4G14770 | 44.231 | 780 | 281 | 31 | 1 | 754 | 20 | 671 | 2.39e-152 | 459 |
| MS.gene49465.t1 | AT4G14770 | 44.344 | 778 | 279 | 30 | 3 | 754 | 2 | 651 | 4.82e-152 | 458 |
| MS.gene49465.t1 | AT3G22760 | 40.208 | 771 | 264 | 31 | 1 | 756 | 20 | 608 | 1.58e-130 | 401 |
| MS.gene49465.t1 | AT3G22760 | 43.932 | 585 | 209 | 24 | 186 | 756 | 6 | 485 | 1.94e-116 | 360 |
| MS.gene49465.t1 | AT3G04850 | 34.472 | 615 | 323 | 20 | 1 | 590 | 17 | 576 | 3.50e-79 | 267 |
| MS.gene49465.t1 | AT5G25790 | 46.923 | 130 | 68 | 1 | 467 | 596 | 95 | 223 | 5.76e-30 | 124 |
| MS.gene49465.t1 | AT5G25790 | 46.923 | 130 | 68 | 1 | 467 | 596 | 95 | 223 | 7.55e-30 | 124 |
| MS.gene49465.t1 | AT2G20110 | 35.526 | 228 | 124 | 5 | 380 | 590 | 20 | 241 | 1.24e-29 | 124 |
| MS.gene49465.t1 | AT5G25790 | 48.462 | 130 | 62 | 2 | 467 | 596 | 95 | 219 | 1.33e-29 | 123 |
| MS.gene49465.t1 | AT2G20110 | 35.526 | 228 | 124 | 5 | 380 | 590 | 20 | 241 | 1.64e-29 | 124 |
| MS.gene49465.t1 | AT2G20110 | 35.526 | 228 | 124 | 5 | 380 | 590 | 20 | 241 | 1.66e-29 | 124 |
| MS.gene49465.t1 | AT4G29000 | 45.385 | 130 | 70 | 1 | 467 | 596 | 132 | 260 | 3.75e-29 | 124 |
| MS.gene49465.t1 | AT3G16160 | 34.979 | 243 | 129 | 9 | 467 | 697 | 66 | 291 | 3.28e-23 | 102 |
Find 165 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCACTGGTTCTGGATATT+TGG | 0.157115 | 5.1:-1304784 | MS.gene49465:CDS |
| TCACCACCACGGAGAATTTC+TGG | 0.214113 | 5.1:+1304684 | None:intergenic |
| GATTGAGACCAAAGAGAATT+TGG | 0.224349 | 5.1:+1304741 | None:intergenic |
| GCAGATTTAACTGGCTTTAT+AGG | 0.232000 | 5.1:+1308264 | None:intergenic |
| TATCTTCTAACCCCAGTTTC+AGG | 0.233911 | 5.1:+1305529 | None:intergenic |
| AATTAACATATTAGCAGAAT+TGG | 0.258385 | 5.1:+1307598 | None:intergenic |
| CAAATTGAAAATTTGACTTC+TGG | 0.261230 | 5.1:-1306542 | MS.gene49465:CDS |
| CGCTTTCGCGTCTTAATTCC+AGG | 0.270053 | 5.1:-1307937 | MS.gene49465:CDS |
| AAGATTTACATGGTTGATTC+AGG | 0.271475 | 5.1:-1307470 | MS.gene49465:CDS |
| TGGCAATTCAAATGAGAAAA+TGG | 0.271811 | 5.1:-1307342 | MS.gene49465:CDS |
| CAACACCTTTACGGCTTTCC+AGG | 0.273435 | 5.1:-1304950 | MS.gene49465:intron |
| TTTGCCTTTGTGATCCTTTA+CGG | 0.280925 | 5.1:+1306565 | None:intergenic |
| TCAGCACTTCGGATGACTTT+AGG | 0.288928 | 5.1:+1305559 | None:intergenic |
| GCTGACTCTGTGCCTGAAAC+TGG | 0.291755 | 5.1:-1305541 | MS.gene49465:CDS |
| GTTACAACCCTCACTGGTTC+TGG | 0.305204 | 5.1:-1304792 | MS.gene49465:CDS |
| TTGCGAAACCAAATTCTCTT+TGG | 0.309179 | 5.1:-1304749 | MS.gene49465:CDS |
| TGTACAGGTTCTGCTTCTAT+AGG | 0.312813 | 5.1:-1305089 | MS.gene49465:intron |
| CCGAGAGATGCTGATGTTCT+TGG | 0.317181 | 5.1:+1306471 | None:intergenic |
| TCTTTAGCCTTTGATTCTTC+CGG | 0.320531 | 5.1:+1308016 | None:intergenic |
| GAAATATTGTGAATGCTATC+AGG | 0.323011 | 5.1:-1305360 | MS.gene49465:intron |
| TTTGAAGAACAGTATCTTCA+TGG | 0.328335 | 5.1:+1305623 | None:intergenic |
| ATTTCTGGCATTTCATCATC+TGG | 0.343435 | 5.1:+1304699 | None:intergenic |
| GTACAGGTTCTGCTTCTATA+GGG | 0.354552 | 5.1:-1305088 | MS.gene49465:intron |
| CCCTTCACATCTGCAGCTAA+TGG | 0.355774 | 5.1:+1305244 | None:intergenic |
| AGCATTCACAATATTTCTTT+AGG | 0.370111 | 5.1:+1305366 | None:intergenic |
| TCCTGGTACATTGTTGTAGC+AGG | 0.370487 | 5.1:+1307504 | None:intergenic |
| CTGGGGTCTCAACACCTTTA+CGG | 0.372102 | 5.1:-1304959 | MS.gene49465:CDS |
| TGATGAGGATAACACACTTT+TGG | 0.374598 | 5.1:-1307768 | MS.gene49465:CDS |
| AATATCATCTGAAAGAGAAT+TGG | 0.381101 | 5.1:-1306435 | MS.gene49465:CDS |
| TTCGCAAAGATGCATGTTGC+CGG | 0.388684 | 5.1:-1306618 | MS.gene49465:CDS |
| ATTAACATATTAGCAGAATT+GGG | 0.391197 | 5.1:+1307599 | None:intergenic |
| CTCTTCGCCTAACTGTGAAA+TGG | 0.395894 | 5.1:-1304610 | MS.gene49465:CDS |
| GTTGAGACCCCAGCAGAATC+AGG | 0.402631 | 5.1:+1304969 | None:intergenic |
| GTAATGTGAGCAGATTTAAC+TGG | 0.404452 | 5.1:+1308255 | None:intergenic |
| TGGCTTTCCCTTTGATGAAA+AGG | 0.412518 | 5.1:+1304827 | None:intergenic |
| CTGTCACACACCGTGGCATT+CGG | 0.418651 | 5.1:-1306784 | MS.gene49465:CDS |
| AATAAATTGTACTCAAATGA+AGG | 0.424880 | 5.1:-1307977 | MS.gene49465:CDS |
| GTGAAAGTTCAGACTGTGAT+TGG | 0.429225 | 5.1:-1307634 | MS.gene49465:CDS |
| GGCTTTCCCTTTGATGAAAA+GGG | 0.433636 | 5.1:+1304828 | None:intergenic |
| TTGTTGATATAGTTGAATAC+TGG | 0.434917 | 5.1:+1308294 | None:intergenic |
| CATCCCTCAATTTCTCCGAC+TGG | 0.435335 | 5.1:+1306206 | None:intergenic |
| TCTTCGCCTAACTGTGAAAT+GGG | 0.439819 | 5.1:-1304609 | MS.gene49465:CDS |
| GGTTATGATCCTACACTTTG+TGG | 0.443504 | 5.1:-1307791 | MS.gene49465:CDS |
| ACAAAATCGCTGAGTCGTAT+AGG | 0.443839 | 5.1:+1307530 | None:intergenic |
| TCAGTAGCCATGTAAGCTAT+AGG | 0.446368 | 5.1:+1306368 | None:intergenic |
| GCACAGGACAATCTTGCTAA+TGG | 0.451745 | 5.1:-1307377 | MS.gene49465:CDS |
| TCTGCTTCTATAGGGATAGA+AGG | 0.452212 | 5.1:-1305080 | MS.gene49465:CDS |
| AATTGGACCCATCCGACAAT+GGG | 0.452280 | 5.1:-1306418 | MS.gene49465:CDS |
| GAAGGGTGCAAGAACGCATT+TGG | 0.452291 | 5.1:-1305227 | MS.gene49465:CDS |
| GCAATGATGTAGAGCTGGTC+AGG | 0.456666 | 5.1:+1306507 | None:intergenic |
| GAAGATCATCCTGATTCTGC+TGG | 0.460122 | 5.1:-1304978 | MS.gene49465:CDS |
| AATCTTCTGATCATCATTCC+TGG | 0.460270 | 5.1:+1307487 | None:intergenic |
| CTGACTCTGTGCCTGAAACT+GGG | 0.462110 | 5.1:-1305540 | MS.gene49465:CDS |
| AGAGCCAGTCGGAGAAATTG+AGG | 0.468017 | 5.1:-1306210 | MS.gene49465:CDS |
| CAGTATAATTGTGGTAGTCC+TGG | 0.468942 | 5.1:-1307812 | MS.gene49465:CDS |
| AGCACTTTCATGCAATTCCC+TGG | 0.472085 | 5.1:+1307919 | None:intergenic |
| CATAGAACCTTGTTCCTGTC+AGG | 0.475825 | 5.1:-1305665 | MS.gene49465:CDS |
| AGATGCATGTTGCCGGGTAT+CGG | 0.479372 | 5.1:-1306611 | MS.gene49465:CDS |
| GCTAATGGTTCTTCGATGAC+TGG | 0.480583 | 5.1:-1307362 | MS.gene49465:CDS |
| CTTCATCTCCAAATGGCAAA+AGG | 0.482506 | 5.1:-1304635 | MS.gene49465:CDS |
| TAGCCATGTAAGCTATAGGC+TGG | 0.482786 | 5.1:+1306372 | None:intergenic |
| GAGGCTGAATTGCATCTTCA+AGG | 0.483131 | 5.1:-1307680 | MS.gene49465:CDS |
| CCCTTTGATGAAAAGGGCAT+CGG | 0.485976 | 5.1:+1304834 | None:intergenic |
| CTCCTAGTCGCAGAGGTGGC+AGG | 0.487950 | 5.1:-1304581 | MS.gene49465:CDS |
| ATCAAAACTTCATCTCCAAA+TGG | 0.504677 | 5.1:-1304642 | MS.gene49465:CDS |
| GTCCGTTGCGGCTACTAGCT+CGG | 0.508571 | 5.1:+1307409 | None:intergenic |
| GGTCTGATGCAGAAATCATC+AGG | 0.508813 | 5.1:-1307557 | MS.gene49465:CDS |
| TAGCCTTTGATTCTTCCGGC+TGG | 0.510192 | 5.1:+1308020 | None:intergenic |
| AGAACAGTATCTTCATGGAT+AGG | 0.511164 | 5.1:+1305628 | None:intergenic |
| CAAGAACGCATTTGGTAGAA+AGG | 0.511592 | 5.1:-1305219 | MS.gene49465:CDS |
| GAGTAGCAATGATGTAGAGC+TGG | 0.514316 | 5.1:+1306502 | None:intergenic |
| TTTGTTGAAGCATTCCTGAC+AGG | 0.514321 | 5.1:+1305651 | None:intergenic |
| TCCCCAGCCTATAGCTTACA+TGG | 0.518437 | 5.1:-1306375 | MS.gene49465:CDS |
| AAATGAGAAAATGGATAATG+AGG | 0.521298 | 5.1:-1307333 | MS.gene49465:intron |
| GGCTGAACCCCATTGTCGGA+TGG | 0.521823 | 5.1:+1306410 | None:intergenic |
| ATAAATTGTACTCAAATGAA+GGG | 0.524572 | 5.1:-1307976 | MS.gene49465:CDS |
| CCCTGCTACAACAATGTACC+AGG | 0.525552 | 5.1:-1307505 | MS.gene49465:CDS |
| GACGATCCCATTTCACAGTT+AGG | 0.526872 | 5.1:+1304603 | None:intergenic |
| GCTTCAGCGCGCCATAAAAG+AGG | 0.528280 | 5.1:-1305413 | MS.gene49465:CDS |
| ATCGGATGATGCATATGCTC+AGG | 0.530983 | 5.1:-1307726 | MS.gene49465:CDS |
| TGCGATCTTCCTTCGCACAC+TGG | 0.531010 | 5.1:+1306736 | None:intergenic |
| AAGATCATCCTGATTCTGCT+GGG | 0.531460 | 5.1:-1304977 | MS.gene49465:CDS |
| AGGGTTGTAACAAAAGATCT+TGG | 0.531631 | 5.1:+1304804 | None:intergenic |
| GAATGCACTTGCTACCGTAA+AGG | 0.534952 | 5.1:-1306579 | MS.gene49465:CDS |
| CCTGGTACATTGTTGTAGCA+GGG | 0.537895 | 5.1:+1307505 | None:intergenic |
| GAATTAAGACGCGAAAGCGT+AGG | 0.538425 | 5.1:+1307941 | None:intergenic |
| GCTGAACCCCATTGTCGGAT+GGG | 0.544431 | 5.1:+1306411 | None:intergenic |
| AGTAGGCTGAACCCCATTGT+CGG | 0.545258 | 5.1:+1306406 | None:intergenic |
| TAGGAATCTAGATTCCTTGA+GGG | 0.545296 | 5.1:+1308167 | None:intergenic |
| AACGCATTTGGTAGAAAGGA+TGG | 0.546612 | 5.1:-1305215 | MS.gene49465:intron |
| GCGCTGTCTTGACTTTGAGA+TGG | 0.547351 | 5.1:-1306759 | MS.gene49465:CDS |
| AGCCATGTAAGCTATAGGCT+GGG | 0.550019 | 5.1:+1306373 | None:intergenic |
| GCCTCATGTCACCTCCCTCA+AGG | 0.551599 | 5.1:-1308181 | MS.gene49465:CDS |
| TCGCAAAGATGCATGTTGCC+GGG | 0.554525 | 5.1:-1306617 | MS.gene49465:CDS |
| AACGGACACTGACCGTGCAC+AGG | 0.555108 | 5.1:-1307393 | MS.gene49465:CDS |
| AACTAGTCAGATCGATCGAA+AGG | 0.555727 | 5.1:-1307657 | MS.gene49465:CDS |
| TAAGGGTGATGTGTGAGAGA+AGG | 0.557637 | 5.1:+1304528 | None:intergenic |
| GCCATGTAAGCTATAGGCTG+GGG | 0.557913 | 5.1:+1306374 | None:intergenic |
| GAATTGGACCCATCCGACAA+TGG | 0.560509 | 5.1:-1306419 | MS.gene49465:CDS |
| AGCATATGCATCATCCGATA+CGG | 0.562944 | 5.1:+1307730 | None:intergenic |
| TCCATTAGCTGCAGATGTGA+AGG | 0.563119 | 5.1:-1305245 | MS.gene49465:CDS |
| TGACTCTGTGCCTGAAACTG+GGG | 0.566690 | 5.1:-1305539 | MS.gene49465:intron |
| GAGCCAGTCGGAGAAATTGA+GGG | 0.568531 | 5.1:-1306209 | MS.gene49465:CDS |
| TGAAAGTTCAGACTGTGATT+GGG | 0.569942 | 5.1:-1307633 | MS.gene49465:CDS |
| GTTGTAACAAAAGATCTTGG+TGG | 0.570269 | 5.1:+1304807 | None:intergenic |
| TCAAACCTGGAAAGCCGTAA+AGG | 0.570767 | 5.1:+1304945 | None:intergenic |
| TAACCAGCCGGAAGAATCAA+AGG | 0.570940 | 5.1:-1308023 | MS.gene49465:CDS |
| CTCGAGTTTATTACCTGCGT+AGG | 0.579058 | 5.1:+1308148 | None:intergenic |
| TGAGGCGACGCGAAAACAGA+CGG | 0.581467 | 5.1:+1308198 | None:intergenic |
| TCCTTGAGGGAGGTGACATG+AGG | 0.583987 | 5.1:+1308180 | None:intergenic |
| AGACTGTGGTGTACTAGAGT+TGG | 0.586929 | 5.1:+1306697 | None:intergenic |
| AGAAACTAGTGACAAGGGTG+TGG | 0.586951 | 5.1:-1305039 | MS.gene49465:CDS |
| TCACACACCGTGGCATTCGG+AGG | 0.587057 | 5.1:-1306781 | MS.gene49465:CDS |
| GCTTTCGCGTCTTAATTCCA+GGG | 0.588910 | 5.1:-1307936 | MS.gene49465:CDS |
| CAATTATACTGTAATGATTG+TGG | 0.589570 | 5.1:+1307824 | None:intergenic |
| ATTGTCTGGTGAAGCCGTAT+CGG | 0.592735 | 5.1:-1307744 | MS.gene49465:CDS |
| AAGCATTCCTGACAGGAACA+AGG | 0.596059 | 5.1:+1305658 | None:intergenic |
| AACTAGTGACAAGGGTGTGG+AGG | 0.596480 | 5.1:-1305036 | MS.gene49465:CDS |
| CCAAGAACATCAGCATCTCT+CGG | 0.597520 | 5.1:-1306471 | MS.gene49465:CDS |
| GAATTCATTATTTCAGACTG+TGG | 0.599589 | 5.1:+1306683 | None:intergenic |
| GCTGAGCAACTGATTTCAGT+AGG | 0.602495 | 5.1:-1307899 | MS.gene49465:CDS |
| CTGGTACATTGTTGTAGCAG+GGG | 0.602762 | 5.1:+1307506 | None:intergenic |
| TTCAAGTGTAAACCGATACC+CGG | 0.605302 | 5.1:+1306599 | None:intergenic |
| TGATGATCAGAAGATTTACA+TGG | 0.605691 | 5.1:-1307480 | MS.gene49465:CDS |
| TTGAGATGGCCAGTGTGCGA+AGG | 0.607118 | 5.1:-1306745 | MS.gene49465:CDS |
| TAGCAAGATTGTCCTGTGCA+CGG | 0.611369 | 5.1:+1307381 | None:intergenic |
| CTTTAGGAGCAAATGCAAGA+GGG | 0.612218 | 5.1:+1305575 | None:intergenic |
| ACTAGTCAGATCGATCGAAA+GGG | 0.612598 | 5.1:-1307656 | MS.gene49465:CDS |
| AGGAATCTAGATTCCTACGC+AGG | 0.613226 | 5.1:-1308161 | MS.gene49465:intron |
| CAAATATCCAGAACCAGTGA+GGG | 0.617109 | 5.1:+1304785 | None:intergenic |
| TCGTCTCCTAGTCGCAGAGG+TGG | 0.618263 | 5.1:-1304585 | MS.gene49465:CDS |
| TGGTACATTGTTGTAGCAGG+GGG | 0.619846 | 5.1:+1307507 | None:intergenic |
| ACTTTAGGAGCAAATGCAAG+AGG | 0.620252 | 5.1:+1305574 | None:intergenic |
| CCATTAGCTGCAGATGTGAA+GGG | 0.621617 | 5.1:-1305244 | MS.gene49465:CDS |
| TTCCGAGCTAGTAGCCGCAA+CGG | 0.624512 | 5.1:-1307411 | MS.gene49465:CDS |
| AGATCATCCTGATTCTGCTG+GGG | 0.627174 | 5.1:-1304976 | MS.gene49465:CDS |
| CCAAATATCCAGAACCAGTG+AGG | 0.627791 | 5.1:+1304784 | None:intergenic |
| TTCCTGCCACCTCTGCGACT+AGG | 0.628203 | 5.1:+1304579 | None:intergenic |
| GGCTGGGGACAATCTTCAGT+AGG | 0.630869 | 5.1:+1306389 | None:intergenic |
| TAAATTGTACTCAAATGAAG+GGG | 0.630996 | 5.1:-1307975 | MS.gene49465:CDS |
| GTAGGAATCTAGATTCCTTG+AGG | 0.640124 | 5.1:+1308166 | None:intergenic |
| CAATCATTACAGTATAATTG+TGG | 0.641974 | 5.1:-1307821 | MS.gene49465:CDS |
| AGAAACAGAAACTAGTGACA+AGG | 0.642503 | 5.1:-1305045 | MS.gene49465:CDS |
| CAGGCACAGAGTCAGCACTT+CGG | 0.643193 | 5.1:+1305548 | None:intergenic |
| TTTATCTAGACATAACCAGC+CGG | 0.647804 | 5.1:-1308035 | MS.gene49465:intron |
| TGCACGGTCAGTGTCCGTTG+CGG | 0.648114 | 5.1:+1307397 | None:intergenic |
| AGTTCAGACTGTGATTGGGA+TGG | 0.649288 | 5.1:-1307629 | MS.gene49465:CDS |
| GAAACAGAAACTAGTGACAA+GGG | 0.650767 | 5.1:-1305044 | MS.gene49465:CDS |
| TGTGTGAGAGAAGGAAACGA+TGG | 0.651131 | 5.1:+1304537 | None:intergenic |
| GAATCTAGATTCCTTGAGGG+AGG | 0.652274 | 5.1:+1308170 | None:intergenic |
| TCCTACACTTTGTGGTGATG+AGG | 0.652902 | 5.1:-1307783 | MS.gene49465:CDS |
| GATGATGCATATGCTCAGGA+AGG | 0.661427 | 5.1:-1307722 | MS.gene49465:CDS |
| GACAGCGCCTCCGAATGCCA+CGG | 0.667054 | 5.1:+1306774 | None:intergenic |
| CAAAGTGTAGGATCATAACC+AGG | 0.669535 | 5.1:+1307794 | None:intergenic |
| CTTGTTTCTGTCACACACCG+TGG | 0.670686 | 5.1:-1306791 | MS.gene49465:CDS |
| AGGCGTAAGTCAGAGCCAGT+CGG | 0.672763 | 5.1:-1306221 | MS.gene49465:CDS |
| TCCTCATCACCACAAAGTGT+AGG | 0.678275 | 5.1:+1307782 | None:intergenic |
| GGATCGTCTCCTAGTCGCAG+AGG | 0.678306 | 5.1:-1304588 | MS.gene49465:CDS |
| TTGTGTGACAGATTCAGTCG+AGG | 0.697669 | 5.1:-1307699 | MS.gene49465:CDS |
| ATTGGACCCATCCGACAATG+GGG | 0.707831 | 5.1:-1306417 | MS.gene49465:CDS |
| GGCGACGCGAAAACAGACGG+AGG | 0.713947 | 5.1:+1308201 | None:intergenic |
| ATGCCAGAAATTCTCCGTGG+TGG | 0.726252 | 5.1:-1304687 | MS.gene49465:CDS |
| TAGGAGAGCTATCACCACCA+CGG | 0.736061 | 5.1:+1304673 | None:intergenic |
| GCTACCGTAAAGGATCACAA+AGG | 0.764621 | 5.1:-1306569 | MS.gene49465:CDS |
| GAAATGCCAGAAATTCTCCG+TGG | 0.824692 | 5.1:-1304690 | MS.gene49465:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGCTTATATAATATAATA+GGG | + | chr5.1:1305760-1305779 | None:intergenic | 10.0% |
| !! | ATAACTGAAAAAGAATAATA+TGG | + | chr5.1:1307119-1307138 | None:intergenic | 15.0% |
| !! | GTATGCTTATATAATATAAT+AGG | + | chr5.1:1305761-1305780 | None:intergenic | 15.0% |
| !! | GTCTAGATAAATAAATAAAT+TGG | + | chr5.1:1304789-1304808 | None:intergenic | 15.0% |
| !! | GTTATAATATGAATTACTTA+TGG | - | chr5.1:1307534-1307553 | MS.gene49465:CDS | 15.0% |
| !! | AATAAATTGTACTCAAATGA+AGG | - | chr5.1:1304856-1304875 | MS.gene49465:intron | 20.0% |
| !! | AATTAACATATTAGCAGAAT+TGG | + | chr5.1:1305238-1305257 | None:intergenic | 20.0% |
| !! | ACAAAAATTGATAAAAGGAA+TGG | + | chr5.1:1307727-1307746 | None:intergenic | 20.0% |
| !! | ATAAAAAGAAATCAATGAGA+TGG | + | chr5.1:1306566-1306585 | None:intergenic | 20.0% |
| !! | ATAAATTGTACTCAAATGAA+GGG | - | chr5.1:1304857-1304876 | MS.gene49465:intron | 20.0% |
| !! | ATTAACATATTAGCAGAATT+GGG | + | chr5.1:1305237-1305256 | None:intergenic | 20.0% |
| !! | GATCAATTAAACATAGAAAA+TGG | + | chr5.1:1306848-1306867 | None:intergenic | 20.0% |
| !! | TATTATACTTATACTAAGCT+TGG | - | chr5.1:1306583-1306602 | MS.gene49465:CDS | 20.0% |
| !!! | AAATTGGTAATCATTAGAAA+TGG | + | chr5.1:1304773-1304792 | None:intergenic | 20.0% |
| !!! | CATAACTTATTTAGTTTTCA+AGG | + | chr5.1:1306778-1306797 | None:intergenic | 20.0% |
| !!! | TAAGACAAATTTAAAGCTAA+TGG | + | chr5.1:1307695-1307714 | None:intergenic | 20.0% |
| !!! | TATAAGCATACTTTTTGTTA+TGG | - | chr5.1:1305770-1305789 | MS.gene49465:intron | 20.0% |
| !!! | TGTTTAATTGATCCTTTTTA+CGG | - | chr5.1:1306855-1306874 | MS.gene49465:intron | 20.0% |
| ! | AAATGAGAAAATGGATAATG+AGG | - | chr5.1:1305500-1305519 | MS.gene49465:intron | 25.0% |
| ! | AACGAAAAACAGATGAAAAA+AGG | + | chr5.1:1306708-1306727 | None:intergenic | 25.0% |
| ! | AACTAAGATCAATCAATAAC+GGG | + | chr5.1:1307959-1307978 | None:intergenic | 25.0% |
| ! | AAGGAAATTAATCAACTGAT+TGG | + | chr5.1:1307044-1307063 | None:intergenic | 25.0% |
| ! | AATATCATCTGAAAGAGAAT+TGG | - | chr5.1:1306398-1306417 | MS.gene49465:CDS | 25.0% |
| ! | ACGAAAAACAGATGAAAAAA+GGG | + | chr5.1:1306707-1306726 | None:intergenic | 25.0% |
| ! | AGCATTCACAATATTTCTTT+AGG | + | chr5.1:1307470-1307489 | None:intergenic | 25.0% |
| ! | AGGAAATTAATCAACTGATT+GGG | + | chr5.1:1307043-1307062 | None:intergenic | 25.0% |
| ! | CAATCATTACAGTATAATTG+TGG | - | chr5.1:1305012-1305031 | MS.gene49465:CDS | 25.0% |
| ! | CAATTATACTGTAATGATTG+TGG | + | chr5.1:1305012-1305031 | None:intergenic | 25.0% |
| ! | CATATTATAACTGAAACTTG+AGG | + | chr5.1:1307525-1307544 | None:intergenic | 25.0% |
| ! | CCTGTACAAAAATTGATAAA+AGG | + | chr5.1:1307732-1307751 | None:intergenic | 25.0% |
| ! | GAACTAAGATCAATCAATAA+CGG | + | chr5.1:1307960-1307979 | None:intergenic | 25.0% |
| ! | GTCATTTAAATTCTACAGAA+TGG | + | chr5.1:1306805-1306824 | None:intergenic | 25.0% |
| ! | TAAATTGTACTCAAATGAAG+GGG | - | chr5.1:1304858-1304877 | MS.gene49465:intron | 25.0% |
| ! | TCAGTTGATTAATTTCCTTA+AGG | - | chr5.1:1307045-1307064 | MS.gene49465:intron | 25.0% |
| ! | TTGTTGATATAGTTGAATAC+TGG | + | chr5.1:1304542-1304561 | None:intergenic | 25.0% |
| !! | CAAATTGAAAATTTGACTTC+TGG | - | chr5.1:1306291-1306310 | MS.gene49465:intron | 25.0% |
| !! | CCTTTTATCAATTTTTGTAC+AGG | - | chr5.1:1307729-1307748 | MS.gene49465:CDS | 25.0% |
| !! | GTTTAATTGATCCTTTTTAC+GGG | - | chr5.1:1306856-1306875 | MS.gene49465:intron | 25.0% |
| !! | TATGGTAGTTTTCTTTTGAA+GGG | - | chr5.1:1307552-1307571 | MS.gene49465:CDS | 25.0% |
| !! | TTATGGTAGTTTTCTTTTGA+AGG | - | chr5.1:1307551-1307570 | MS.gene49465:CDS | 25.0% |
| !! | TTCACTTACCTTTTCTTTTT+GGG | + | chr5.1:1306510-1306529 | None:intergenic | 25.0% |
| !!! | ATGGCATTTTGTTTTCTTTT+GGG | - | chr5.1:1305922-1305941 | MS.gene49465:intron | 25.0% |
| !!! | TATGGCATTTTGTTTTCTTT+TGG | - | chr5.1:1305921-1305940 | MS.gene49465:intron | 25.0% |
| !!! | TTCATCTGTTTTTCGTTTTT+GGG | - | chr5.1:1306711-1306730 | MS.gene49465:CDS | 25.0% |
| !!! | TTTCATCTGTTTTTCGTTTT+TGG | - | chr5.1:1306710-1306729 | MS.gene49465:CDS | 25.0% |
| AACTTGAGGTAAACATGATA+TGG | + | chr5.1:1307511-1307530 | None:intergenic | 30.0% | |
| AAGTGTGTTGTAATGTTGTA+TGG | - | chr5.1:1305903-1305922 | MS.gene49465:intron | 30.0% | |
| AGAAAATGGATAATGAGGTA+AGG | - | chr5.1:1305505-1305524 | MS.gene49465:intron | 30.0% | |
| AGCTGACAAACAAAACATTT+GGG | + | chr5.1:1307916-1307935 | None:intergenic | 30.0% | |
| ATCAAAACTTCATCTCCAAA+TGG | - | chr5.1:1308191-1308210 | MS.gene49465:CDS | 30.0% | |
| GAAATATTGTGAATGCTATC+AGG | - | chr5.1:1307473-1307492 | MS.gene49465:CDS | 30.0% | |
| GAATTCATTATTTCAGACTG+TGG | + | chr5.1:1306153-1306172 | None:intergenic | 30.0% | |
| GTTCTGTTACAATCATTTCT+AGG | - | chr5.1:1305602-1305621 | MS.gene49465:CDS | 30.0% | |
| TAGCTGACAAACAAAACATT+TGG | + | chr5.1:1307917-1307936 | None:intergenic | 30.0% | |
| TCATGGAAAAACACAATTAC+AGG | + | chr5.1:1305642-1305661 | None:intergenic | 30.0% | |
| TGATGATCAGAAGATTTACA+TGG | - | chr5.1:1305353-1305372 | MS.gene49465:intron | 30.0% | |
| TGGCAATTCAAATGAGAAAA+TGG | - | chr5.1:1305491-1305510 | MS.gene49465:intron | 30.0% | |
| TTTGAAGAACAGTATCTTCA+TGG | + | chr5.1:1307213-1307232 | None:intergenic | 30.0% | |
| ! | AAGATTTACATGGTTGATTC+AGG | - | chr5.1:1305363-1305382 | MS.gene49465:CDS | 30.0% |
| ! | AATTGAAGCAGAAGCTTTTA+AGG | - | chr5.1:1305254-1305273 | MS.gene49465:CDS | 30.0% |
| ! | ATTGAAGCAGAAGCTTTTAA+GGG | - | chr5.1:1305255-1305274 | MS.gene49465:CDS | 30.0% |
| ! | CCAAACAGAAGCATAATTTA+GGG | + | chr5.1:1305883-1305902 | None:intergenic | 30.0% |
| ! | CTTCACTTACCTTTTCTTTT+TGG | + | chr5.1:1306511-1306530 | None:intergenic | 30.0% |
| ! | TCACTTACCTTTTCTTTTTG+GGG | + | chr5.1:1306509-1306528 | None:intergenic | 30.0% |
| ! | TCCAAACAGAAGCATAATTT+AGG | + | chr5.1:1305884-1305903 | None:intergenic | 30.0% |
| !!! | TGGCATTTTGTTTTCTTTTG+GGG | - | chr5.1:1305923-1305942 | MS.gene49465:intron | 30.0% |
| AAACATTTGGGTATCAAACC+TGG | + | chr5.1:1307904-1307923 | None:intergenic | 35.0% | |
| AACCTGGCTGAAAAAAACTT+TGG | + | chr5.1:1306991-1307010 | None:intergenic | 35.0% | |
| AATCTTCTGATCATCATTCC+TGG | + | chr5.1:1305349-1305368 | None:intergenic | 35.0% | |
| AGAAACAGAAACTAGTGACA+AGG | - | chr5.1:1307788-1307807 | MS.gene49465:CDS | 35.0% | |
| AGAACAGTATCTTCATGGAT+AGG | + | chr5.1:1307208-1307227 | None:intergenic | 35.0% | |
| AGGGTTGTAACAAAAGATCT+TGG | + | chr5.1:1308032-1308051 | None:intergenic | 35.0% | |
| ATAATATGCAGCCCGTAAAA+AGG | + | chr5.1:1306870-1306889 | None:intergenic | 35.0% | |
| ATCCCAAATGCATGATTTCT+AGG | - | chr5.1:1305666-1305685 | MS.gene49465:CDS | 35.0% | |
| ATGTAGTTGTATGTTTCCCT+GGG | - | chr5.1:1305571-1305590 | MS.gene49465:CDS | 35.0% | |
| CAATGCTGCATATAACCTTA+AGG | + | chr5.1:1307063-1307082 | None:intergenic | 35.0% | |
| CCCTAAATTATGCTTCTGTT+TGG | - | chr5.1:1305880-1305899 | MS.gene49465:intron | 35.0% | |
| GAAACAGAAACTAGTGACAA+GGG | - | chr5.1:1307789-1307808 | MS.gene49465:CDS | 35.0% | |
| GAGGTAAACATGATATGGTA+AGG | + | chr5.1:1307506-1307525 | None:intergenic | 35.0% | |
| GATTGAGACCAAAGAGAATT+TGG | + | chr5.1:1308095-1308114 | None:intergenic | 35.0% | |
| GCTAGGACAAGAAAAACTAA+TGG | + | chr5.1:1306902-1306921 | None:intergenic | 35.0% | |
| GGTTAATTTCAGTACCAGTA+TGG | + | chr5.1:1307098-1307117 | None:intergenic | 35.0% | |
| GTAATGTGAGCAGATTTAAC+TGG | + | chr5.1:1304581-1304600 | None:intergenic | 35.0% | |
| GTTGTAACAAAAGATCTTGG+TGG | + | chr5.1:1308029-1308048 | None:intergenic | 35.0% | |
| TAGGAATCTAGATTCCTTGA+GGG | + | chr5.1:1304669-1304688 | None:intergenic | 35.0% | |
| TATACTAAGCTTGGATATGC+AGG | - | chr5.1:1306592-1306611 | MS.gene49465:CDS | 35.0% | |
| TGAAAGTTCAGACTGTGATT+GGG | - | chr5.1:1305200-1305219 | MS.gene49465:intron | 35.0% | |
| TGCCTAGAAATCATGCATTT+GGG | + | chr5.1:1305671-1305690 | None:intergenic | 35.0% | |
| TTGCCTAGAAATCATGCATT+TGG | + | chr5.1:1305672-1305691 | None:intergenic | 35.0% | |
| TTGCGAAACCAAATTCTCTT+TGG | - | chr5.1:1308084-1308103 | MS.gene49465:intron | 35.0% | |
| TTTATCTAGACATAACCAGC+CGG | - | chr5.1:1304798-1304817 | MS.gene49465:CDS | 35.0% | |
| TTTGCCTTTGTGATCCTTTA+CGG | + | chr5.1:1306271-1306290 | None:intergenic | 35.0% | |
| ! | AATTTGCGTTACGTTTTGCA+GGG | + | chr5.1:1306197-1306216 | None:intergenic | 35.0% |
| ! | ACTGTGATTTGTAGTCAATC+AGG | - | chr5.1:1305837-1305856 | MS.gene49465:intron | 35.0% |
| ! | ATGCATTTGGGATAAACTCA+TGG | + | chr5.1:1305659-1305678 | None:intergenic | 35.0% |
| ! | CTGTGATTTGTAGTCAATCA+GGG | - | chr5.1:1305838-1305857 | MS.gene49465:intron | 35.0% |
| ! | TCTTTAGCCTTTGATTCTTC+CGG | + | chr5.1:1304820-1304839 | None:intergenic | 35.0% |
| ! | TGATGAGGATAACACACTTT+TGG | - | chr5.1:1305065-1305084 | MS.gene49465:CDS | 35.0% |
| ! | TTGATCTTAGTTCTTGCAAC+AGG | - | chr5.1:1307967-1307986 | MS.gene49465:CDS | 35.0% |
| !! | ATTTCTGGCATTTCATCATC+TGG | + | chr5.1:1308137-1308156 | None:intergenic | 35.0% |
| !! | GAAGTTTTGATGCATGCAAT+AGG | + | chr5.1:1308182-1308201 | None:intergenic | 35.0% |
| !! | GCAGATTTAACTGGCTTTAT+AGG | + | chr5.1:1304572-1304591 | None:intergenic | 35.0% |
| !! | GGAATTTTCAAGCATAAAGC+AGG | + | chr5.1:1306545-1306564 | None:intergenic | 35.0% |
| !!! | AACACACTTTTGGAATTGTC+TGG | - | chr5.1:1305075-1305094 | MS.gene49465:CDS | 35.0% |
| !!! | TTTCAGCCAGGTTTTTTTAC+CGG | - | chr5.1:1306998-1307017 | MS.gene49465:intron | 35.0% |
| AACAGAACTCTCTAAACCCA+GGG | + | chr5.1:1305590-1305609 | None:intergenic | 40.0% | |
| AACGCATTTGGTAGAAAGGA+TGG | - | chr5.1:1307618-1307637 | MS.gene49465:CDS | 40.0% | |
| AACTAGTCAGATCGATCGAA+AGG | - | chr5.1:1305176-1305195 | MS.gene49465:intron | 40.0% | |
| AAGATCATCCTGATTCTGCT+GGG | - | chr5.1:1307856-1307875 | MS.gene49465:CDS | 40.0% | |
| ACAAAATCGCTGAGTCGTAT+AGG | + | chr5.1:1305306-1305325 | None:intergenic | 40.0% | |
| ACTAGTCAGATCGATCGAAA+GGG | - | chr5.1:1305177-1305196 | MS.gene49465:intron | 40.0% | |
| AGAACAGCCCCAAAAAGAAA+AGG | - | chr5.1:1306499-1306518 | MS.gene49465:CDS | 40.0% | |
| AGCATATGCATCATCCGATA+CGG | + | chr5.1:1305106-1305125 | None:intergenic | 40.0% | |
| CAAAGTGTAGGATCATAACC+AGG | + | chr5.1:1305042-1305061 | None:intergenic | 40.0% | |
| CAAATATCCAGAACCAGTGA+GGG | + | chr5.1:1308051-1308070 | None:intergenic | 40.0% | |
| CAAGAACGCATTTGGTAGAA+AGG | - | chr5.1:1307614-1307633 | MS.gene49465:CDS | 40.0% | |
| CAGTATAATTGTGGTAGTCC+TGG | - | chr5.1:1305021-1305040 | MS.gene49465:CDS | 40.0% | |
| CATGTAGTTGTATGTTTCCC+TGG | - | chr5.1:1305570-1305589 | MS.gene49465:CDS | 40.0% | |
| CTCAAGTGGTTAATGAACTC+CGG | + | chr5.1:1307020-1307039 | None:intergenic | 40.0% | |
| CTTCATCTCCAAATGGCAAA+AGG | - | chr5.1:1308198-1308217 | MS.gene49465:CDS | 40.0% | |
| GGACCTAGTAATCCAAACTT+TGG | - | chr5.1:1306943-1306962 | MS.gene49465:intron | 40.0% | |
| GGCTTTCCCTTTGATGAAAA+GGG | + | chr5.1:1308008-1308027 | None:intergenic | 40.0% | |
| GGTTATGATCCTACACTTTG+TGG | - | chr5.1:1305042-1305061 | MS.gene49465:CDS | 40.0% | |
| GTACAGGTTCTGCTTCTATA+GGG | - | chr5.1:1307745-1307764 | MS.gene49465:CDS | 40.0% | |
| GTAGGAATCTAGATTCCTTG+AGG | + | chr5.1:1304670-1304689 | None:intergenic | 40.0% | |
| GTGAAAGTTCAGACTGTGAT+TGG | - | chr5.1:1305199-1305218 | MS.gene49465:intron | 40.0% | |
| TAACAGAACTCTCTAAACCC+AGG | + | chr5.1:1305591-1305610 | None:intergenic | 40.0% | |
| TACCATGGTCTGCAATGTAA+GGG | + | chr5.1:1307652-1307671 | None:intergenic | 40.0% | |
| TAGGCAATGAGTATGAGTAC+AGG | - | chr5.1:1305685-1305704 | MS.gene49465:CDS | 40.0% | |
| TATCTTCTAACCCCAGTTTC+AGG | + | chr5.1:1307307-1307326 | None:intergenic | 40.0% | |
| TCAGTAGCCATGTAAGCTAT+AGG | + | chr5.1:1306468-1306487 | None:intergenic | 40.0% | |
| TCTGCTTCTATAGGGATAGA+AGG | - | chr5.1:1307753-1307772 | MS.gene49465:CDS | 40.0% | |
| TCTTCGCCTAACTGTGAAAT+GGG | - | chr5.1:1308224-1308243 | MS.gene49465:CDS | 40.0% | |
| TGAACTCCGGTAAAAAAACC+TGG | + | chr5.1:1307007-1307026 | None:intergenic | 40.0% | |
| TGACTTGAAGATGACCATAC+TGG | - | chr5.1:1307081-1307100 | MS.gene49465:intron | 40.0% | |
| TGGCCAAAGTTTGGATTACT+AGG | + | chr5.1:1306949-1306968 | None:intergenic | 40.0% | |
| TGGCTTTCCCTTTGATGAAA+AGG | + | chr5.1:1308009-1308028 | None:intergenic | 40.0% | |
| TGTACAGGTTCTGCTTCTAT+AGG | - | chr5.1:1307744-1307763 | MS.gene49465:CDS | 40.0% | |
| TTAAAGCTAATGGCCCTGAT+TGG | + | chr5.1:1307685-1307704 | None:intergenic | 40.0% | |
| TTCAAGTGTAAACCGATACC+CGG | + | chr5.1:1306237-1306256 | None:intergenic | 40.0% | |
| ! | ACTTTAGGAGCAAATGCAAG+AGG | + | chr5.1:1307262-1307281 | None:intergenic | 40.0% |
| ! | AGAGTACAAGACTGGTTGAA+GGG | + | chr5.1:1306744-1306763 | None:intergenic | 40.0% |
| ! | CTTTAGGAGCAAATGCAAGA+GGG | + | chr5.1:1307261-1307280 | None:intergenic | 40.0% |
| ! | GAAGAGATCCTTTTGCCATT+TGG | + | chr5.1:1308209-1308228 | None:intergenic | 40.0% |
| ! | GAATTTGCGTTACGTTTTGC+AGG | + | chr5.1:1306198-1306217 | None:intergenic | 40.0% |
| ! | GATACAAGAGAGTACAAGAC+TGG | + | chr5.1:1306752-1306771 | None:intergenic | 40.0% |
| ! | TATTGTGAGTGTTTTGCTGC+TGG | - | chr5.1:1307136-1307155 | MS.gene49465:intron | 40.0% |
| ! | TCTTTTGTTACAACCCTCAC+TGG | - | chr5.1:1308035-1308054 | MS.gene49465:intron | 40.0% |
| ! | TGCAGTTGCATCCTCTTTTA+TGG | + | chr5.1:1307434-1307453 | None:intergenic | 40.0% |
| ! | TTTGTTGAAGCATTCCTGAC+AGG | + | chr5.1:1307185-1307204 | None:intergenic | 40.0% |
| !! | GGTAGTTTTCTTTTGAAGGG+TGG | - | chr5.1:1307555-1307574 | MS.gene49465:CDS | 40.0% |
| !! | TTTCTTTTGAAGGGTGGTGT+TGG | - | chr5.1:1307561-1307580 | MS.gene49465:CDS | 40.0% |
| !! | TTTTTCTTGTCCTAGCCTTC+CGG | - | chr5.1:1306906-1306925 | MS.gene49465:intron | 40.0% |
| !!! | CTGAAGCTGGAGTTTTGTTT+GGG | + | chr5.1:1307407-1307426 | None:intergenic | 40.0% |
| AAGCATTCCTGACAGGAACA+AGG | + | chr5.1:1307178-1307197 | None:intergenic | 45.0% | |
| AATTGGACCCATCCGACAAT+GGG | - | chr5.1:1306415-1306434 | MS.gene49465:CDS | 45.0% | |
| AGAAACTAGTGACAAGGGTG+TGG | - | chr5.1:1307794-1307813 | MS.gene49465:CDS | 45.0% | |
| AGACTGTGGTGTACTAGAGT+TGG | + | chr5.1:1306139-1306158 | None:intergenic | 45.0% | |
| AGATCATCCTGATTCTGCTG+GGG | - | chr5.1:1307857-1307876 | MS.gene49465:CDS | 45.0% | |
| AGCACTTTCATGCAATTCCC+TGG | + | chr5.1:1304917-1304936 | None:intergenic | 45.0% | |
| AGCCATGTAAGCTATAGGCT+GGG | + | chr5.1:1306463-1306482 | None:intergenic | 45.0% | |
| AGGAATCTAGATTCCTACGC+AGG | - | chr5.1:1304672-1304691 | MS.gene49465:CDS | 45.0% | |
| AGTTCAGACTGTGATTGGGA+TGG | - | chr5.1:1305204-1305223 | MS.gene49465:intron | 45.0% | |
| ATCAACTGATTGGGCTCAAG+TGG | + | chr5.1:1307034-1307053 | None:intergenic | 45.0% | |
| ATCGGATGATGCATATGCTC+AGG | - | chr5.1:1305107-1305126 | MS.gene49465:intron | 45.0% | |
| ATTGTCTGGTGAAGCCGTAT+CGG | - | chr5.1:1305089-1305108 | MS.gene49465:intron | 45.0% | |
| CATAGAACCTTGTTCCTGTC+AGG | - | chr5.1:1307168-1307187 | MS.gene49465:intron | 45.0% | |
| CCAAATATCCAGAACCAGTG+AGG | + | chr5.1:1308052-1308071 | None:intergenic | 45.0% | |
| CCAAGAACATCAGCATCTCT+CGG | - | chr5.1:1306362-1306381 | MS.gene49465:CDS | 45.0% | |
| CCATTAGCTGCAGATGTGAA+GGG | - | chr5.1:1307589-1307608 | MS.gene49465:CDS | 45.0% | |
| CCTGGTACATTGTTGTAGCA+GGG | + | chr5.1:1305331-1305350 | None:intergenic | 45.0% | |
| CTACCATGGTCTGCAATGTA+AGG | + | chr5.1:1307653-1307672 | None:intergenic | 45.0% | |
| CTCGAGTTTATTACCTGCGT+AGG | + | chr5.1:1304688-1304707 | None:intergenic | 45.0% | |
| CTCTTCGCCTAACTGTGAAA+TGG | - | chr5.1:1308223-1308242 | MS.gene49465:CDS | 45.0% | |
| CTGGTACATTGTTGTAGCAG+GGG | + | chr5.1:1305330-1305349 | None:intergenic | 45.0% | |
| CTTGTCTCTTGGCCAAAGTT+TGG | + | chr5.1:1306958-1306977 | None:intergenic | 45.0% | |
| GAAATGCCAGAAATTCTCCG+TGG | - | chr5.1:1308143-1308162 | MS.gene49465:intron | 45.0% | |
| GAAGATCATCCTGATTCTGC+TGG | - | chr5.1:1307855-1307874 | MS.gene49465:CDS | 45.0% | |
| GAATCTAGATTCCTTGAGGG+AGG | + | chr5.1:1304666-1304685 | None:intergenic | 45.0% | |
| GACGATCCCATTTCACAGTT+AGG | + | chr5.1:1308233-1308252 | None:intergenic | 45.0% | |
| GAGGCTGAATTGCATCTTCA+AGG | - | chr5.1:1305153-1305172 | MS.gene49465:intron | 45.0% | |
| GAGTAGCAATGATGTAGAGC+TGG | + | chr5.1:1306334-1306353 | None:intergenic | 45.0% | |
| GATGATGCATATGCTCAGGA+AGG | - | chr5.1:1305111-1305130 | MS.gene49465:intron | 45.0% | |
| GCACAGGACAATCTTGCTAA+TGG | - | chr5.1:1305456-1305475 | MS.gene49465:intron | 45.0% | |
| GCCAAGAGACAAGTAAACTC+TGG | - | chr5.1:1306965-1306984 | MS.gene49465:intron | 45.0% | |
| GCCAGAGTTTACTTGTCTCT+TGG | + | chr5.1:1306969-1306988 | None:intergenic | 45.0% | |
| GCTAATGGTTCTTCGATGAC+TGG | - | chr5.1:1305471-1305490 | MS.gene49465:intron | 45.0% | |
| GCTACCGTAAAGGATCACAA+AGG | - | chr5.1:1306264-1306283 | MS.gene49465:intron | 45.0% | |
| GCTTTCGCGTCTTAATTCCA+GGG | - | chr5.1:1304897-1304916 | MS.gene49465:intron | 45.0% | |
| GGTCTGATGCAGAAATCATC+AGG | - | chr5.1:1305276-1305295 | MS.gene49465:intron | 45.0% | |
| TAACCAGCCGGAAGAATCAA+AGG | - | chr5.1:1304810-1304829 | MS.gene49465:CDS | 45.0% | |
| TAAGGGTGATGTGTGAGAGA+AGG | + | chr5.1:1308308-1308327 | None:intergenic | 45.0% | |
| TAGCAAGATTGTCCTGTGCA+CGG | + | chr5.1:1305455-1305474 | None:intergenic | 45.0% | |
| TAGCCATGTAAGCTATAGGC+TGG | + | chr5.1:1306464-1306483 | None:intergenic | 45.0% | |
| TCAAACCTGGAAAGCCGTAA+AGG | + | chr5.1:1307891-1307910 | None:intergenic | 45.0% | |
| TCAGCACTTCGGATGACTTT+AGG | + | chr5.1:1307277-1307296 | None:intergenic | 45.0% | |
| TCCATTAGCTGCAGATGTGA+AGG | - | chr5.1:1307588-1307607 | MS.gene49465:CDS | 45.0% | |
| TCCTCATCACCACAAAGTGT+AGG | + | chr5.1:1305054-1305073 | None:intergenic | 45.0% | |
| TCCTGGTACATTGTTGTAGC+AGG | + | chr5.1:1305332-1305351 | None:intergenic | 45.0% | |
| TGGTACATTGTTGTAGCAGG+GGG | + | chr5.1:1305329-1305348 | None:intergenic | 45.0% | |
| TGTGTGAGAGAAGGAAACGA+TGG | + | chr5.1:1308299-1308318 | None:intergenic | 45.0% | |
| TTCCCTTACATTGCAGACCA+TGG | - | chr5.1:1307647-1307666 | MS.gene49465:CDS | 45.0% | |
| TTCGCAAAGATGCATGTTGC+CGG | - | chr5.1:1306215-1306234 | MS.gene49465:CDS | 45.0% | |
| TTGTGTGACAGATTCAGTCG+AGG | - | chr5.1:1305134-1305153 | MS.gene49465:intron | 45.0% | |
| ! | CCCTTTGATGAAAAGGGCAT+CGG | + | chr5.1:1308002-1308021 | None:intergenic | 45.0% |
| ! | CCGATGCCCTTTTCATCAAA+GGG | - | chr5.1:1307999-1308018 | MS.gene49465:CDS | 45.0% |
| ! | GAAAATGGTCGCAAAGTGCT+TGG | + | chr5.1:1306833-1306852 | None:intergenic | 45.0% |
| ! | GAATGCACTTGCTACCGTAA+AGG | - | chr5.1:1306254-1306273 | MS.gene49465:intron | 45.0% |
| ! | GAATTAAGACGCGAAAGCGT+AGG | + | chr5.1:1304895-1304914 | None:intergenic | 45.0% |
| ! | GAGAGTACAAGACTGGTTGA+AGG | + | chr5.1:1306745-1306764 | None:intergenic | 45.0% |
| ! | GCTGAGCAACTGATTTCAGT+AGG | - | chr5.1:1304934-1304953 | MS.gene49465:intron | 45.0% |
| ! | TACGTTTTGCAGGGAGCAAT+TGG | + | chr5.1:1306188-1306207 | None:intergenic | 45.0% |
| ! | TCCGATGCCCTTTTCATCAA+AGG | - | chr5.1:1307998-1308017 | MS.gene49465:CDS | 45.0% |
| ! | TCCTACACTTTGTGGTGATG+AGG | - | chr5.1:1305050-1305069 | MS.gene49465:CDS | 45.0% |
| ! | TGGTTTCGCAAGCTTTTGAC+TGG | + | chr5.1:1308075-1308094 | None:intergenic | 45.0% |
| !! | CCTCACTGGTTCTGGATATT+TGG | - | chr5.1:1308049-1308068 | MS.gene49465:intron | 45.0% |
| !!! | GCTGAAGCTGGAGTTTTGTT+TGG | + | chr5.1:1307408-1307427 | None:intergenic | 45.0% |
| !!! | GGCCAAAGTTTTTTTCAGCC+AGG | - | chr5.1:1306986-1307005 | MS.gene49465:intron | 45.0% |
| !! | TAGTTAAAAAAAAAAAAAAA+AGG | + | chr5.1:1304717-1304736 | None:intergenic | 5.0% |
| AGAGCCAGTCGGAGAAATTG+AGG | - | chr5.1:1306623-1306642 | MS.gene49465:CDS | 50.0% | |
| AGATGCATGTTGCCGGGTAT+CGG | - | chr5.1:1306222-1306241 | MS.gene49465:CDS | 50.0% | |
| AGTAGGCTGAACCCCATTGT+CGG | + | chr5.1:1306430-1306449 | None:intergenic | 50.0% | |
| ATGCCAGAAATTCTCCGTGG+TGG | - | chr5.1:1308146-1308165 | MS.gene49465:intron | 50.0% | |
| ATTGGACCCATCCGACAATG+GGG | - | chr5.1:1306416-1306435 | MS.gene49465:CDS | 50.0% | |
| ATTGGCGTTCCAAGCTACCA+TGG | + | chr5.1:1307667-1307686 | None:intergenic | 50.0% | |
| CAACACCTTTACGGCTTTCC+AGG | - | chr5.1:1307883-1307902 | MS.gene49465:CDS | 50.0% | |
| CATCCCTCAATTTCTCCGAC+TGG | + | chr5.1:1306630-1306649 | None:intergenic | 50.0% | |
| CATTGCAGACCATGGTAGCT+TGG | - | chr5.1:1307655-1307674 | MS.gene49465:CDS | 50.0% | |
| CCCTGCTACAACAATGTACC+AGG | - | chr5.1:1305328-1305347 | MS.gene49465:intron | 50.0% | |
| CCCTTCACATCTGCAGCTAA+TGG | + | chr5.1:1307592-1307611 | None:intergenic | 50.0% | |
| CCGAGAGATGCTGATGTTCT+TGG | + | chr5.1:1306365-1306384 | None:intergenic | 50.0% | |
| CCTTCCGGTTCTCAAAGGAA+GGG | - | chr5.1:1306921-1306940 | MS.gene49465:intron | 50.0% | |
| CGCTTTCGCGTCTTAATTCC+AGG | - | chr5.1:1304896-1304915 | MS.gene49465:intron | 50.0% | |
| CTGACTCTGTGCCTGAAACT+GGG | - | chr5.1:1307293-1307312 | MS.gene49465:intron | 50.0% | |
| CTGGGGTCTCAACACCTTTA+CGG | - | chr5.1:1307874-1307893 | MS.gene49465:CDS | 50.0% | |
| CTTCCGGTTCTCAAAGGAAG+GGG | - | chr5.1:1306922-1306941 | MS.gene49465:intron | 50.0% | |
| GAATTGGACCCATCCGACAA+TGG | - | chr5.1:1306414-1306433 | MS.gene49465:CDS | 50.0% | |
| GAGCCAGTCGGAGAAATTGA+GGG | - | chr5.1:1306624-1306643 | MS.gene49465:CDS | 50.0% | |
| GCAATGATGTAGAGCTGGTC+AGG | + | chr5.1:1306329-1306348 | None:intergenic | 50.0% | |
| GCCATGTAAGCTATAGGCTG+GGG | + | chr5.1:1306462-1306481 | None:intergenic | 50.0% | |
| GTAGCTTGGAACGCCAATCA+GGG | - | chr5.1:1307669-1307688 | MS.gene49465:CDS | 50.0% | |
| TAGCCTTTGATTCTTCCGGC+TGG | + | chr5.1:1304816-1304835 | None:intergenic | 50.0% | |
| TAGGAGAGCTATCACCACCA+CGG | + | chr5.1:1308163-1308182 | None:intergenic | 50.0% | |
| TCACCACCACGGAGAATTTC+TGG | + | chr5.1:1308152-1308171 | None:intergenic | 50.0% | |
| TCCCCAGCCTATAGCTTACA+TGG | - | chr5.1:1306458-1306477 | MS.gene49465:CDS | 50.0% | |
| TCGCAAAGATGCATGTTGCC+GGG | - | chr5.1:1306216-1306235 | MS.gene49465:CDS | 50.0% | |
| TGACTCTGTGCCTGAAACTG+GGG | - | chr5.1:1307294-1307313 | MS.gene49465:intron | 50.0% | |
| ! | AACTAGTGACAAGGGTGTGG+AGG | - | chr5.1:1307797-1307816 | MS.gene49465:CDS | 50.0% |
| ! | GAAGGGTGCAAGAACGCATT+TGG | - | chr5.1:1307606-1307625 | MS.gene49465:CDS | 50.0% |
| ! | GCGCTGTCTTGACTTTGAGA+TGG | - | chr5.1:1306074-1306093 | MS.gene49465:intron | 50.0% |
| !! | CTTGTTTCTGTCACACACCG+TGG | - | chr5.1:1306042-1306061 | MS.gene49465:intron | 50.0% |
| !! | GTTACAACCCTCACTGGTTC+TGG | - | chr5.1:1308041-1308060 | MS.gene49465:intron | 50.0% |
| AGGCGTAAGTCAGAGCCAGT+CGG | - | chr5.1:1306612-1306631 | MS.gene49465:CDS | 55.0% | |
| CAGGCACAGAGTCAGCACTT+CGG | + | chr5.1:1307288-1307307 | None:intergenic | 55.0% | |
| CTGTCACACACCGTGGCATT+CGG | - | chr5.1:1306049-1306068 | MS.gene49465:intron | 55.0% | |
| GCCTTCCGGTTCTCAAAGGA+AGG | - | chr5.1:1306920-1306939 | MS.gene49465:intron | 55.0% | |
| GCTGAACCCCATTGTCGGAT+GGG | + | chr5.1:1306425-1306444 | None:intergenic | 55.0% | |
| GCTTCAGCGCGCCATAAAAG+AGG | - | chr5.1:1307420-1307439 | MS.gene49465:CDS | 55.0% | |
| GGCTGGGGACAATCTTCAGT+AGG | + | chr5.1:1306447-1306466 | None:intergenic | 55.0% | |
| GGTAGCTTGGAACGCCAATC+AGG | - | chr5.1:1307668-1307687 | MS.gene49465:CDS | 55.0% | |
| GTTGAGACCCCAGCAGAATC+AGG | + | chr5.1:1307867-1307886 | None:intergenic | 55.0% | |
| TCCTTGAGGGAGGTGACATG+AGG | + | chr5.1:1304656-1304675 | None:intergenic | 55.0% | |
| TGAGGCGACGCGAAAACAGA+CGG | + | chr5.1:1304638-1304657 | None:intergenic | 55.0% | |
| TGCGATCTTCCTTCGCACAC+TGG | + | chr5.1:1306100-1306119 | None:intergenic | 55.0% | |
| TTCCGAGCTAGTAGCCGCAA+CGG | - | chr5.1:1305422-1305441 | MS.gene49465:CDS | 55.0% | |
| TTGAGATGGCCAGTGTGCGA+AGG | - | chr5.1:1306088-1306107 | MS.gene49465:intron | 55.0% | |
| ! | CCCTTCCTTTGAGAACCGGA+AGG | + | chr5.1:1306924-1306943 | None:intergenic | 55.0% |
| ! | CCTAGCCTTCCGGTTCTCAA+AGG | - | chr5.1:1306916-1306935 | MS.gene49465:intron | 55.0% |
| ! | CCTTTGAGAACCGGAAGGCT+AGG | + | chr5.1:1306919-1306938 | None:intergenic | 55.0% |
| ! | CTTTTATGGCGCGCTGAAGC+TGG | + | chr5.1:1307420-1307439 | None:intergenic | 55.0% |
| ! | GCTGACTCTGTGCCTGAAAC+TGG | - | chr5.1:1307292-1307311 | MS.gene49465:intron | 55.0% |
| ! | GGTCCCCTTCCTTTGAGAAC+CGG | + | chr5.1:1306928-1306947 | None:intergenic | 55.0% |
| AACGGACACTGACCGTGCAC+AGG | - | chr5.1:1305440-1305459 | MS.gene49465:intron | 60.0% | |
| GCCTCATGTCACCTCCCTCA+AGG | - | chr5.1:1304652-1304671 | MS.gene49465:CDS | 60.0% | |
| GGATCGTCTCCTAGTCGCAG+AGG | - | chr5.1:1308245-1308264 | MS.gene49465:CDS | 60.0% | |
| GGCTGAACCCCATTGTCGGA+TGG | + | chr5.1:1306426-1306445 | None:intergenic | 60.0% | |
| GTCCGTTGCGGCTACTAGCT+CGG | + | chr5.1:1305427-1305446 | None:intergenic | 60.0% | |
| TCACACACCGTGGCATTCGG+AGG | - | chr5.1:1306052-1306071 | MS.gene49465:intron | 60.0% | |
| TCGTCTCCTAGTCGCAGAGG+TGG | - | chr5.1:1308248-1308267 | MS.gene49465:CDS | 60.0% | |
| TGCACGGTCAGTGTCCGTTG+CGG | + | chr5.1:1305439-1305458 | None:intergenic | 60.0% | |
| TTCCTGCCACCTCTGCGACT+AGG | + | chr5.1:1308257-1308276 | None:intergenic | 60.0% | |
| CTCCTAGTCGCAGAGGTGGC+AGG | - | chr5.1:1308252-1308271 | MS.gene49465:CDS | 65.0% | |
| GACAGCGCCTCCGAATGCCA+CGG | + | chr5.1:1306062-1306081 | None:intergenic | 65.0% | |
| GGCGACGCGAAAACAGACGG+AGG | + | chr5.1:1304635-1304654 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 1304527 | 1308328 | 1304527 | ID=MS.gene49465 |
| chr5.1 | mRNA | 1304527 | 1308328 | 1304527 | ID=MS.gene49465.t1;Parent=MS.gene49465 |
| chr5.1 | exon | 1308162 | 1308328 | 1308162 | ID=MS.gene49465.t1.exon1;Parent=MS.gene49465.t1 |
| chr5.1 | CDS | 1308162 | 1308328 | 1308162 | ID=cds.MS.gene49465.t1;Parent=MS.gene49465.t1 |
| chr5.1 | exon | 1307334 | 1308048 | 1307334 | ID=MS.gene49465.t1.exon2;Parent=MS.gene49465.t1 |
| chr5.1 | CDS | 1307334 | 1308048 | 1307334 | ID=cds.MS.gene49465.t1;Parent=MS.gene49465.t1 |
| chr5.1 | exon | 1306335 | 1306813 | 1306335 | ID=MS.gene49465.t1.exon3;Parent=MS.gene49465.t1 |
| chr5.1 | CDS | 1306335 | 1306813 | 1306335 | ID=cds.MS.gene49465.t1;Parent=MS.gene49465.t1 |
| chr5.1 | exon | 1306167 | 1306241 | 1306167 | ID=MS.gene49465.t1.exon4;Parent=MS.gene49465.t1 |
| chr5.1 | CDS | 1306167 | 1306241 | 1306167 | ID=cds.MS.gene49465.t1;Parent=MS.gene49465.t1 |
| chr5.1 | exon | 1305540 | 1305720 | 1305540 | ID=MS.gene49465.t1.exon5;Parent=MS.gene49465.t1 |
| chr5.1 | CDS | 1305540 | 1305720 | 1305540 | ID=cds.MS.gene49465.t1;Parent=MS.gene49465.t1 |
| chr5.1 | exon | 1305361 | 1305456 | 1305361 | ID=MS.gene49465.t1.exon6;Parent=MS.gene49465.t1 |
| chr5.1 | CDS | 1305361 | 1305456 | 1305361 | ID=cds.MS.gene49465.t1;Parent=MS.gene49465.t1 |
| chr5.1 | exon | 1305216 | 1305282 | 1305216 | ID=MS.gene49465.t1.exon7;Parent=MS.gene49465.t1 |
| chr5.1 | CDS | 1305216 | 1305282 | 1305216 | ID=cds.MS.gene49465.t1;Parent=MS.gene49465.t1 |
| chr5.1 | exon | 1304951 | 1305104 | 1304951 | ID=MS.gene49465.t1.exon8;Parent=MS.gene49465.t1 |
| chr5.1 | CDS | 1304951 | 1305104 | 1304951 | ID=cds.MS.gene49465.t1;Parent=MS.gene49465.t1 |
| chr5.1 | exon | 1304527 | 1304866 | 1304527 | ID=MS.gene49465.t1.exon9;Parent=MS.gene49465.t1 |
| chr5.1 | CDS | 1304527 | 1304866 | 1304527 | ID=cds.MS.gene49465.t1;Parent=MS.gene49465.t1 |
| Gene Sequence |
| Protein sequence |
