Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50538.t1 | XP_003590588.1 | 97.3 | 489 | 9 | 1 | 1 | 489 | 1 | 485 | 1.00E-219 | 772.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50538.t1 | Q8W4K5 | 62.9 | 493 | 162 | 11 | 7 | 489 | 11 | 492 | 4.1e-129 | 463.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50538.t1 | G7IDK3 | 97.3 | 489 | 9 | 1 | 1 | 489 | 1 | 485 | 7.3e-220 | 772.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049850 | MS.gene50538 | 0.812641 | 3.83E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene50538 | 0.816849 | 4.47E-52 | -1.69E-46 |
| MS.gene050901 | MS.gene50538 | 0.824301 | 8.69E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene50538 | 0.801462 | 8.90E-49 | -1.69E-46 |
| MS.gene05157 | MS.gene50538 | 0.825341 | 4.94E-54 | -1.69E-46 |
| MS.gene051664 | MS.gene50538 | 0.826096 | 3.27E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene50538 | 0.820228 | 7.66E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene50538 | 0.847411 | 1.18E-59 | -1.69E-46 |
| MS.gene052133 | MS.gene50538 | 0.80969 | 1.67E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene50538 | 0.819008 | 1.46E-52 | -1.69E-46 |
| MS.gene053174 | MS.gene50538 | 0.810518 | 1.11E-50 | -1.69E-46 |
| MS.gene053581 | MS.gene50538 | 0.801856 | 7.39E-49 | -1.69E-46 |
| MS.gene054550 | MS.gene50538 | 0.808769 | 2.63E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene50538 | 0.811015 | 8.65E-51 | -1.69E-46 |
| MS.gene055465 | MS.gene50538 | 0.811051 | 8.49E-51 | -1.69E-46 |
| MS.gene055466 | MS.gene50538 | 0.822842 | 1.91E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene50538 | 0.801484 | 8.81E-49 | -1.69E-46 |
| MS.gene055537 | MS.gene50538 | 0.822312 | 2.53E-53 | -1.69E-46 |
| MS.gene057915 | MS.gene50538 | 0.807466 | 4.99E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50538.t1 | MTR_1g071450 | 97.342 | 489 | 9 | 2 | 1 | 489 | 1 | 485 | 0.0 | 974 |
| MS.gene50538.t1 | MTR_7g095500 | 76.891 | 476 | 88 | 11 | 1 | 472 | 1 | 458 | 0.0 | 625 |
| MS.gene50538.t1 | MTR_1g041395 | 65.385 | 468 | 144 | 7 | 26 | 487 | 13 | 468 | 1.16e-158 | 459 |
| MS.gene50538.t1 | MTR_1g041395 | 65.385 | 468 | 143 | 7 | 26 | 487 | 13 | 467 | 4.02e-158 | 457 |
| MS.gene50538.t1 | MTR_1g041395 | 64.831 | 472 | 146 | 7 | 26 | 487 | 13 | 474 | 6.76e-158 | 457 |
| MS.gene50538.t1 | MTR_1g102980 | 61.505 | 465 | 148 | 8 | 24 | 487 | 20 | 454 | 3.62e-136 | 400 |
| MS.gene50538.t1 | MTR_1g041395 | 73.333 | 300 | 79 | 1 | 188 | 487 | 39 | 337 | 5.80e-113 | 337 |
| MS.gene50538.t1 | MTR_1g102980 | 65.868 | 334 | 101 | 4 | 155 | 487 | 8 | 329 | 2.35e-100 | 305 |
| MS.gene50538.t1 | MTR_3g110182 | 38.242 | 455 | 198 | 12 | 26 | 478 | 33 | 406 | 4.56e-67 | 221 |
| MS.gene50538.t1 | MTR_4g039910 | 47.692 | 260 | 101 | 6 | 188 | 438 | 100 | 333 | 1.01e-51 | 179 |
| MS.gene50538.t1 | MTR_3g110182 | 37.817 | 394 | 163 | 11 | 26 | 417 | 31 | 344 | 4.66e-45 | 162 |
| MS.gene50538.t1 | MTR_5g012870 | 37.417 | 302 | 148 | 7 | 189 | 481 | 113 | 382 | 6.11e-43 | 157 |
| MS.gene50538.t1 | MTR_7g095630 | 68.750 | 64 | 19 | 1 | 91 | 153 | 83 | 146 | 1.69e-19 | 87.0 |
| MS.gene50538.t1 | MTR_7g095630 | 57.812 | 64 | 21 | 2 | 208 | 269 | 140 | 199 | 1.25e-11 | 64.3 |
| MS.gene50538.t1 | MTR_4g019730 | 58.621 | 58 | 22 | 1 | 404 | 461 | 1 | 56 | 1.83e-15 | 73.2 |
| MS.gene50538.t1 | MTR_4g129510 | 31.741 | 293 | 158 | 7 | 189 | 479 | 118 | 370 | 7.95e-14 | 73.6 |
| MS.gene50538.t1 | MTR_4g129510 | 31.741 | 293 | 158 | 7 | 189 | 479 | 87 | 339 | 5.93e-13 | 70.5 |
| MS.gene50538.t1 | MTR_4g129510 | 36.620 | 213 | 102 | 3 | 189 | 400 | 118 | 298 | 2.04e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene50538.t1 | AT3G22810 | 62.839 | 479 | 157 | 10 | 14 | 486 | 6 | 469 | 2.71e-180 | 514 |
| MS.gene50538.t1 | AT4G14740 | 62.845 | 471 | 155 | 10 | 24 | 486 | 16 | 474 | 6.72e-172 | 493 |
| MS.gene50538.t1 | AT4G14740 | 62.845 | 471 | 155 | 10 | 24 | 486 | 16 | 474 | 6.72e-172 | 493 |
| MS.gene50538.t1 | AT3G63300 | 62.677 | 493 | 163 | 11 | 7 | 489 | 11 | 492 | 5.92e-165 | 476 |
| MS.gene50538.t1 | AT5G43870 | 59.072 | 474 | 152 | 11 | 19 | 486 | 15 | 452 | 1.74e-148 | 432 |
| MS.gene50538.t1 | AT3G22810 | 62.530 | 411 | 133 | 10 | 14 | 418 | 6 | 401 | 2.63e-139 | 407 |
| MS.gene50538.t1 | AT3G22810 | 65.964 | 332 | 109 | 3 | 156 | 486 | 3 | 331 | 4.30e-135 | 394 |
| MS.gene50538.t1 | AT4G14740 | 61.634 | 404 | 135 | 10 | 24 | 419 | 16 | 407 | 2.53e-132 | 389 |
| MS.gene50538.t1 | AT4G14740 | 66.667 | 336 | 104 | 4 | 156 | 486 | 3 | 335 | 3.61e-131 | 384 |
| MS.gene50538.t1 | AT5G43870 | 58.374 | 406 | 129 | 10 | 19 | 419 | 15 | 385 | 4.21e-112 | 337 |
| MS.gene50538.t1 | AT3G63300 | 64.118 | 340 | 111 | 7 | 155 | 489 | 1 | 334 | 4.75e-109 | 327 |
| MS.gene50538.t1 | AT4G17350 | 36.544 | 353 | 166 | 10 | 138 | 480 | 82 | 386 | 1.37e-41 | 153 |
| MS.gene50538.t1 | AT4G32780 | 35.463 | 454 | 199 | 11 | 26 | 478 | 35 | 395 | 7.25e-41 | 151 |
| MS.gene50538.t1 | AT4G32780 | 35.463 | 454 | 199 | 11 | 26 | 478 | 54 | 414 | 1.24e-40 | 151 |
| MS.gene50538.t1 | AT4G16670 | 35.644 | 303 | 163 | 8 | 189 | 481 | 132 | 412 | 4.17e-38 | 144 |
| MS.gene50538.t1 | AT5G47440 | 34.421 | 337 | 181 | 8 | 157 | 481 | 79 | 387 | 1.03e-37 | 143 |
| MS.gene50538.t1 | AT4G16670 | 37.083 | 240 | 120 | 7 | 189 | 418 | 132 | 350 | 4.13e-26 | 109 |
| MS.gene50538.t1 | AT4G16670 | 33.086 | 269 | 120 | 8 | 189 | 418 | 132 | 379 | 1.41e-20 | 94.0 |
| MS.gene50538.t1 | AT5G57770 | 33.793 | 290 | 157 | 6 | 141 | 428 | 82 | 338 | 4.18e-20 | 92.8 |
| MS.gene50538.t1 | AT5G57770 | 33.577 | 274 | 150 | 5 | 141 | 412 | 82 | 325 | 2.01e-19 | 89.7 |
Find 81 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTAAAGAACCACCATTTAA+TGG | 0.205078 | 1.2:-54818357 | None:intergenic |
| ACCAAATAAGGATGAGAAAA+TGG | 0.261318 | 1.2:+54820448 | MS.gene50538:CDS |
| CAGCATGAAGTTGAGCATTA+TGG | 0.291068 | 1.2:-54820358 | None:intergenic |
| TTAAATGGTGGTTCTTTAAC+AGG | 0.293923 | 1.2:+54818360 | MS.gene50538:CDS |
| GCTCTTGTACCATTGAATAA+AGG | 0.299178 | 1.2:-54820233 | None:intergenic |
| TTCCTCTAGCAAGAAGTTCT+TGG | 0.299562 | 1.2:-54821388 | None:intergenic |
| GACAATCTACCTGATGTTAA+TGG | 0.299992 | 1.2:-54818321 | None:intergenic |
| TCCTCTAAAAGATGCCTTCC+TGG | 0.305425 | 1.2:-54821847 | None:intergenic |
| AGCATCAACTACACCAAATA+AGG | 0.313923 | 1.2:+54820436 | MS.gene50538:CDS |
| AGAAACTCCATTGGTATTCT+AGG | 0.315941 | 1.2:-54817850 | None:intergenic |
| CCTTGATATATGCAGCTCTA+AGG | 0.317117 | 1.2:+54821180 | MS.gene50538:intron |
| GAAGGAGGAGGTGGTGGTTG+AGG | 0.346886 | 1.2:-54817922 | None:intergenic |
| CATAGCAGTGAACCATTAAA+TGG | 0.367882 | 1.2:+54818345 | MS.gene50538:CDS |
| GGCAATGCAACTCCTTGTTC+AGG | 0.369214 | 1.2:+54820272 | MS.gene50538:CDS |
| AGAGTAGTAATACTTTCTTC+AGG | 0.380242 | 1.2:-54817985 | None:intergenic |
| TTATTTGTAGAAGACTTAGA+AGG | 0.384237 | 1.2:-54817955 | None:intergenic |
| CTTGAGAAAAGCATAGGAAT+TGG | 0.387663 | 1.2:+54821269 | MS.gene50538:CDS |
| CTCTTGTACCATTGAATAAA+GGG | 0.392154 | 1.2:-54820232 | None:intergenic |
| TCCATACACCCTTTATTCAA+TGG | 0.400317 | 1.2:+54820224 | MS.gene50538:CDS |
| CAAGAAGAAGGAGGAGGTGG+TGG | 0.403057 | 1.2:-54817928 | None:intergenic |
| AAACTCATCAGAAGGAGAAA+TGG | 0.415370 | 1.2:-54818397 | None:intergenic |
| AGAGCTATGAGTAGTGGAAT+TGG | 0.425775 | 1.2:+54820251 | MS.gene50538:CDS |
| GAAAATGGCTAAGACTGATA+TGG | 0.426643 | 1.2:+54820463 | MS.gene50538:CDS |
| TCCTCCACTTTCACTAGTGC+TGG | 0.429703 | 1.2:-54821327 | None:intergenic |
| ACCATTGAATAAAGGGTGTA+TGG | 0.446282 | 1.2:-54820225 | None:intergenic |
| TATCTGTAGGTGATCTTCAC+TGG | 0.451022 | 1.2:+54821524 | MS.gene50538:intron |
| AACTCATCAGAAGGAGAAAT+GGG | 0.463215 | 1.2:-54818396 | None:intergenic |
| TCTGTTTATATACATCGAAC+CGG | 0.472832 | 1.2:+54821556 | MS.gene50538:CDS |
| AAGCAAGAAGAAGGAGGAGG+TGG | 0.473902 | 1.2:-54817931 | None:intergenic |
| GTGTTGCCATTGTTATTTGT+TGG | 0.477598 | 1.2:-54817811 | None:intergenic |
| ATTGGTATTCTAGGACTCTC+TGG | 0.477798 | 1.2:-54817841 | None:intergenic |
| TGACAATGGATAGTTAACTT+TGG | 0.480512 | 1.2:-54817772 | None:intergenic |
| CTTGATATATGCAGCTCTAA+GGG | 0.484756 | 1.2:+54821181 | MS.gene50538:intron |
| TGGAGTTTCTATCAAGATCA+TGG | 0.486579 | 1.2:+54817863 | MS.gene50538:CDS |
| ATTGGAATATGTGGTGGTAA+AGG | 0.500015 | 1.2:+54821287 | MS.gene50538:CDS |
| AGTTCCAGCACTAGTGAAAG+TGG | 0.506365 | 1.2:+54821323 | MS.gene50538:CDS |
| TGCCATTGTTATTTGTTGGA+AGG | 0.506542 | 1.2:-54817807 | None:intergenic |
| AGCATAGGAATTGGAATATG+TGG | 0.506802 | 1.2:+54821278 | MS.gene50538:CDS |
| GGTACTCATTTCTATGACAA+TGG | 0.513249 | 1.2:-54817786 | None:intergenic |
| AGATGCCTTCCTGGCCAAGC+TGG | 0.516445 | 1.2:-54821838 | None:intergenic |
| TGTGCACAAATTTACCAGCT+TGG | 0.518454 | 1.2:+54821824 | MS.gene50538:CDS |
| ACAAATTTACCAGCTTGGCC+AGG | 0.521574 | 1.2:+54821829 | MS.gene50538:CDS |
| TGGTTGAGGTGACAATGCTT+TGG | 0.535346 | 1.2:-54817908 | None:intergenic |
| TGAGTTTGACGATGTTGTTA+AGG | 0.540707 | 1.2:+54818413 | MS.gene50538:CDS |
| TAGTTTAGTTACCTCTCTTG+CGG | 0.541433 | 1.2:-54818100 | None:intergenic |
| CTAACTGCTGCAGCTGCCAC+AGG | 0.549453 | 1.2:+54820620 | MS.gene50538:CDS |
| TTATATACATCGAACCGGCC+AGG | 0.552074 | 1.2:+54821561 | MS.gene50538:CDS |
| GAAGTGTCTCCATTAACATC+AGG | 0.553106 | 1.2:+54818312 | MS.gene50538:CDS |
| TTAGAAGGTAAGCAAGAAGA+AGG | 0.556769 | 1.2:-54817940 | None:intergenic |
| GACCTAAAACAGTAGGAAGA+TGG | 0.556861 | 1.2:+54820294 | MS.gene50538:CDS |
| CAAGATTTCTCAAACATGTG+TGG | 0.561026 | 1.2:+54818012 | MS.gene50538:CDS |
| ATGAAAAGCAGACATGTAGC+AGG | 0.561812 | 1.2:+54821678 | MS.gene50538:CDS |
| GGTAAGCAAGAAGAAGGAGG+AGG | 0.564082 | 1.2:-54817934 | None:intergenic |
| TGTTGAAGCTGCTGAAGCAA+TGG | 0.569846 | 1.2:+54820523 | MS.gene50538:CDS |
| TTACTCAAACGCACTCGCAA+AGG | 0.576539 | 1.2:+54821416 | MS.gene50538:CDS |
| CACTAGTGAAAGTGGAGGAG+AGG | 0.576683 | 1.2:+54821331 | MS.gene50538:CDS |
| ATTTACCAGCTTGGCCAGGA+AGG | 0.579688 | 1.2:+54821833 | MS.gene50538:CDS |
| GATCTTGATAGAAACTCCAT+TGG | 0.580591 | 1.2:-54817859 | None:intergenic |
| TTCTTTCCATTGTTTCACAC+AGG | 0.583564 | 1.2:+54821980 | MS.gene50538:CDS |
| GGCTAAGACTGATATGGCTG+TGG | 0.584637 | 1.2:+54820469 | MS.gene50538:CDS |
| GTTGAAGCTGCTGAAGCAAT+GGG | 0.585546 | 1.2:+54820524 | MS.gene50538:CDS |
| ACATCGTCAAACTCATCAGA+AGG | 0.588966 | 1.2:-54818405 | None:intergenic |
| CAAGAGCATTGAAAGAGATG+TGG | 0.593373 | 1.2:+54821222 | MS.gene50538:CDS |
| TGATATATGCAGCTCTAAGG+GGG | 0.594778 | 1.2:+54821183 | MS.gene50538:intron |
| AGAGAGTCCTAGAATACCAA+TGG | 0.596028 | 1.2:+54817843 | MS.gene50538:CDS |
| GGTACAAGAGCTATGAGTAG+TGG | 0.599275 | 1.2:+54820245 | MS.gene50538:CDS |
| TGTTCAGGACCTAAAACAGT+AGG | 0.601269 | 1.2:+54820287 | MS.gene50538:CDS |
| AGCCAAGAACTTCTTGCTAG+AGG | 0.604636 | 1.2:+54821386 | MS.gene50538:CDS |
| TTGATATATGCAGCTCTAAG+GGG | 0.610071 | 1.2:+54821182 | MS.gene50538:intron |
| ACACCACTTGAGAAAAGCAT+AGG | 0.613376 | 1.2:+54821263 | MS.gene50538:CDS |
| CATGTCACAATCCGCAAGAG+AGG | 0.623909 | 1.2:+54818089 | MS.gene50538:CDS |
| TACCTTCCAACAAATAACAA+TGG | 0.629115 | 1.2:+54817805 | MS.gene50538:CDS |
| GAAGGTAAGCAAGAAGAAGG+AGG | 0.632750 | 1.2:-54817937 | None:intergenic |
| GAATATGAATTGTGGACACA+AGG | 0.633773 | 1.2:+54821946 | MS.gene50538:CDS |
| ATAGGAATTGGAATATGTGG+TGG | 0.638819 | 1.2:+54821281 | MS.gene50538:CDS |
| TCCAGCACTAGTGAAAGTGG+AGG | 0.639385 | 1.2:+54821326 | MS.gene50538:CDS |
| CAGAACTAACAACAGAAGCA+AGG | 0.657396 | 1.2:-54820562 | None:intergenic |
| TCATCAGAAGGAGAAATGGG+TGG | 0.664227 | 1.2:-54818393 | None:intergenic |
| AGCAGTGAACCATTAAATGG+TGG | 0.669009 | 1.2:+54818348 | MS.gene50538:CDS |
| GATATATGCAGCTCTAAGGG+GGG | 0.694136 | 1.2:+54821184 | MS.gene50538:intron |
| GGATTGAAGACAGAATCAAG+AGG | 0.704203 | 1.2:+54821892 | MS.gene50538:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr1.2:54819229-54819248 | MS.gene50538:intron | 10.0% |
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr1.2:54819228-54819247 | MS.gene50538:intron | 10.0% |
| !! | TATATAAAAAAAATAAAGGT+TGG | - | chr1.2:54820710-54820729 | None:intergenic | 10.0% |
| !! | AAGCATATCATTAATAATAT+TGG | - | chr1.2:54820170-54820189 | None:intergenic | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr1.2:54819230-54819249 | MS.gene50538:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr1.2:54819294-54819313 | MS.gene50538:intron | 15.0% |
| !! | CAAAATGATTAAACTATATT+TGG | + | chr1.2:54821494-54821513 | MS.gene50538:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr1.2:54819293-54819312 | MS.gene50538:intron | 15.0% |
| !!! | GTTTTTTGTTTATAGTAATT+TGG | + | chr1.2:54818264-54818283 | MS.gene50538:intron | 15.0% |
| !! | AAAAAATCATACTACAAAAC+AGG | - | chr1.2:54821126-54821145 | None:intergenic | 20.0% |
| !! | AAAATTGTGTCCATTAAATT+GGG | - | chr1.2:54819193-54819212 | None:intergenic | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | chr1.2:54819253-54819272 | MS.gene50538:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr1.2:54819326-54819345 | MS.gene50538:intron | 20.0% |
| !! | ATATGAACAAAATGTGTATT+TGG | - | chr1.2:54819724-54819743 | None:intergenic | 20.0% |
| !! | TTAAAGAACAAAAAATTACC+TGG | - | chr1.2:54821582-54821601 | None:intergenic | 20.0% |
| !!! | ACTCTTTTTCTTTTTTGTAA+TGG | - | chr1.2:54821706-54821725 | None:intergenic | 20.0% |
| !!! | ATATTATTTATTTAGGGTAG+TGG | + | chr1.2:54820859-54820878 | MS.gene50538:intron | 20.0% |
| !!! | CTTTTTCTTATAATAAGGAT+CGG | - | chr1.2:54818828-54818847 | None:intergenic | 20.0% |
| !!! | GTCAACTTTTTCTTATAATA+AGG | - | chr1.2:54818833-54818852 | None:intergenic | 20.0% |
| !!! | GTCAATTGTTTCTTATAATA+AGG | + | chr1.2:54818932-54818951 | MS.gene50538:intron | 20.0% |
| !!! | TAAAGTTTGTTTTATGTAAC+AGG | + | chr1.2:54818290-54818309 | MS.gene50538:intron | 20.0% |
| !!! | TAAGAAAAAGTTGACTTTTT+AGG | + | chr1.2:54818838-54818857 | MS.gene50538:intron | 20.0% |
| !!! | TAAGAAACAATTGACTTTTT+TGG | - | chr1.2:54818927-54818946 | None:intergenic | 20.0% |
| !!! | TCAGATTTTTTTTATTCAGA+TGG | + | chr1.2:54820143-54820162 | MS.gene50538:intron | 20.0% |
| ! | AAGTCATAAGCTATAACATT+AGG | - | chr1.2:54819833-54819852 | None:intergenic | 25.0% |
| ! | AATCTCGATTAGAAAATGTA+TGG | - | chr1.2:54820896-54820915 | None:intergenic | 25.0% |
| ! | AATTGTACACCACTAATAAA+TGG | + | chr1.2:54819760-54819779 | MS.gene50538:intron | 25.0% |
| ! | ACCAAAAAGAATATGAATTG+TGG | + | chr1.2:54821938-54821957 | MS.gene50538:CDS | 25.0% |
| ! | AGTACTTTCTTGGTTTAATA+TGG | + | chr1.2:54818973-54818992 | MS.gene50538:intron | 25.0% |
| ! | ATATGTAGGAAAAGACTTAA+GGG | + | chr1.2:54818156-54818175 | MS.gene50538:intron | 25.0% |
| ! | CAAAATTGTGTCCATTAAAT+TGG | - | chr1.2:54819194-54819213 | None:intergenic | 25.0% |
| ! | CTGTAAAGAATCAACTAATA+AGG | + | chr1.2:54821059-54821078 | MS.gene50538:intron | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | chr1.2:54819252-54819271 | MS.gene50538:intron | 25.0% |
| ! | GTTAAAAAATGTCACAATGT+TGG | + | chr1.2:54820683-54820702 | MS.gene50538:intron | 25.0% |
| ! | TATATGTAGGAAAAGACTTA+AGG | + | chr1.2:54818155-54818174 | MS.gene50538:intron | 25.0% |
| ! | TTACAACAGTAACAATACTT+TGG | + | chr1.2:54819022-54819041 | MS.gene50538:intron | 25.0% |
| ! | TTATTTGTAGAAGACTTAGA+AGG | - | chr1.2:54817958-54817977 | None:intergenic | 25.0% |
| ! | TTCCTACATATACTTCAAAA+GGG | - | chr1.2:54818147-54818166 | None:intergenic | 25.0% |
| ! | TTGCAATTTATCTGCATTTA+GGG | + | chr1.2:54819625-54819644 | MS.gene50538:intron | 25.0% |
| ! | TTGCATATTATATGCATTCA+GGG | - | chr1.2:54819475-54819494 | None:intergenic | 25.0% |
| ! | TTTCCTACATATACTTCAAA+AGG | - | chr1.2:54818148-54818167 | None:intergenic | 25.0% |
| ! | TTTGCAATTTATCTGCATTT+AGG | + | chr1.2:54819624-54819643 | MS.gene50538:intron | 25.0% |
| ! | TTTGCATATTATATGCATTC+AGG | - | chr1.2:54819476-54819495 | None:intergenic | 25.0% |
| !! | AAAATGTGTATTTGGTTTCA+CGG | - | chr1.2:54819716-54819735 | None:intergenic | 25.0% |
| !! | ATATTAAACCAAGAAAGTAC+TGG | - | chr1.2:54818974-54818993 | None:intergenic | 25.0% |
| !! | ATTTTTACCAGATATTGTGT+TGG | + | chr1.2:54821798-54821817 | MS.gene50538:intron | 25.0% |
| !! | TCCACAATTCATATTCTTTT+TGG | - | chr1.2:54821942-54821961 | None:intergenic | 25.0% |
| !! | TTGAAATGGATCAGTTATTT+TGG | + | chr1.2:54819340-54819359 | MS.gene50538:intron | 25.0% |
| !! | TTGTTTCTTATAATAAGGAC+CGG | + | chr1.2:54818937-54818956 | MS.gene50538:intron | 25.0% |
| !!! | AGACATTGTTATTCTTTTCA+AGG | + | chr1.2:54818236-54818255 | MS.gene50538:intron | 25.0% |
| !!! | GGACACTTTTTTTAGAAAAT+GGG | + | chr1.2:54819362-54819381 | MS.gene50538:intron | 25.0% |
| !!! | TGAAATGGATCAGTTATTTT+GGG | + | chr1.2:54819341-54819360 | MS.gene50538:intron | 25.0% |
| !!! | TGTTATTCTTTTCAAGGTTT+TGG | + | chr1.2:54818242-54818261 | MS.gene50538:intron | 25.0% |
| AATCAGAAGATAAGGTACAT+TGG | - | chr1.2:54820029-54820048 | None:intergenic | 30.0% | |
| AATGAAGAAAATTCTACCTG+TGG | - | chr1.2:54820639-54820658 | None:intergenic | 30.0% | |
| ACCAAATAAGGATGAGAAAA+TGG | + | chr1.2:54820448-54820467 | MS.gene50538:CDS | 30.0% | |
| ACTAACAAAGTCTACATTCA+GGG | + | chr1.2:54819596-54819615 | MS.gene50538:intron | 30.0% | |
| AGAGTAGTAATACTTTCTTC+AGG | - | chr1.2:54817988-54818007 | None:intergenic | 30.0% | |
| AGTAGAAATTGACACATAGT+TGG | + | chr1.2:54821608-54821627 | MS.gene50538:intron | 30.0% | |
| CATTAGAGACCATTTATTAG+TGG | - | chr1.2:54819772-54819791 | None:intergenic | 30.0% | |
| CTCTTGTACCATTGAATAAA+GGG | - | chr1.2:54820235-54820254 | None:intergenic | 30.0% | |
| GAAAATATGCCAAAATGAGA+AGG | - | chr1.2:54820063-54820082 | None:intergenic | 30.0% | |
| GTAACAATACTTTGGTATAG+AGG | + | chr1.2:54819030-54819049 | MS.gene50538:intron | 30.0% | |
| GTTAAAGAACCACCATTTAA+TGG | - | chr1.2:54818360-54818379 | None:intergenic | 30.0% | |
| TACCTTCCAACAAATAACAA+TGG | + | chr1.2:54817805-54817824 | MS.gene50538:CDS | 30.0% | |
| TCACGGTGGAAAAAAAAAAA+GGG | - | chr1.2:54819699-54819718 | None:intergenic | 30.0% | |
| TCCTACATATACTTCAAAAG+GGG | - | chr1.2:54818146-54818165 | None:intergenic | 30.0% | |
| TCTGTTTATATACATCGAAC+CGG | + | chr1.2:54821556-54821575 | MS.gene50538:CDS | 30.0% | |
| TGACAATGGATAGTTAACTT+TGG | - | chr1.2:54817775-54817794 | None:intergenic | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | chr1.2:54819237-54819256 | MS.gene50538:intron | 30.0% | |
| TTAAATGGTGGTTCTTTAAC+AGG | + | chr1.2:54818360-54818379 | MS.gene50538:CDS | 30.0% | |
| TTCACGGTGGAAAAAAAAAA+AGG | - | chr1.2:54819700-54819719 | None:intergenic | 30.0% | |
| TTCTTATAATAAGGATCGGA+GGG | - | chr1.2:54818824-54818843 | None:intergenic | 30.0% | |
| TTTCCTAGTTAAATGCTGAA+GGG | - | chr1.2:54820105-54820124 | None:intergenic | 30.0% | |
| TTTCTTATAATAAGGATCGG+AGG | - | chr1.2:54818825-54818844 | None:intergenic | 30.0% | |
| ! | ATTTGGTGATTGATATCTGT+AGG | + | chr1.2:54821511-54821530 | MS.gene50538:intron | 30.0% |
| ! | TGAACTTTGAACACAACTTT+TGG | + | chr1.2:54819892-54819911 | MS.gene50538:intron | 30.0% |
| ! | TTTGAACACAACTTTTGGAT+GGG | + | chr1.2:54819897-54819916 | MS.gene50538:intron | 30.0% |
| ! | TTTTCCTAGTTAAATGCTGA+AGG | - | chr1.2:54820106-54820125 | None:intergenic | 30.0% |
| !! | ACTGCAACAATTGTTTCTAA+GGG | - | chr1.2:54818482-54818501 | None:intergenic | 30.0% |
| !! | ATTTATTTAGGGTAGTGGAA+GGG | + | chr1.2:54820864-54820883 | MS.gene50538:intron | 30.0% |
| !! | TATTTATTTAGGGTAGTGGA+AGG | + | chr1.2:54820863-54820882 | MS.gene50538:intron | 30.0% |
| !!! | GGAGGGAATAGTTTTTTTTT+GGG | + | chr1.2:54819401-54819420 | MS.gene50538:intron | 30.0% |
| !!! | GGGACACTTTTTTTAGAAAA+TGG | + | chr1.2:54819361-54819380 | MS.gene50538:intron | 30.0% |
| !!! | GGTGAAAAAAGAAGGTATTT+TGG | + | chr1.2:54821871-54821890 | MS.gene50538:CDS | 30.0% |
| AAACATGTGATCCAAAAGTG+AGG | - | chr1.2:54818781-54818800 | None:intergenic | 35.0% | |
| AAACTCATCAGAAGGAGAAA+TGG | - | chr1.2:54818400-54818419 | None:intergenic | 35.0% | |
| AACTCATCAGAAGGAGAAAT+GGG | - | chr1.2:54818399-54818418 | None:intergenic | 35.0% | |
| ACCACATTGGCAATATAACA+AGG | - | chr1.2:54821156-54821175 | None:intergenic | 35.0% | |
| ACTAACGAAGTCTACATTCA+GGG | + | chr1.2:54819532-54819551 | MS.gene50538:intron | 35.0% | |
| AGAAAATGGGTCAGTTATTC+CGG | + | chr1.2:54819375-54819394 | MS.gene50538:intron | 35.0% | |
| AGAAACTCCATTGGTATTCT+AGG | - | chr1.2:54817853-54817872 | None:intergenic | 35.0% | |
| AGAACAAAAAATTACCTGGC+CGG | - | chr1.2:54821578-54821597 | None:intergenic | 35.0% | |
| AGCATAGGAATTGGAATATG+TGG | + | chr1.2:54821278-54821297 | MS.gene50538:CDS | 35.0% | |
| AGCATCAACTACACCAAATA+AGG | + | chr1.2:54820436-54820455 | MS.gene50538:CDS | 35.0% | |
| AGGAATGTTCATGTTACACA+TGG | + | chr1.2:54821079-54821098 | MS.gene50538:intron | 35.0% | |
| ATAGGAATTGGAATATGTGG+TGG | + | chr1.2:54821281-54821300 | MS.gene50538:CDS | 35.0% | |
| ATATGCCAAAATGAGAAGGT+TGG | - | chr1.2:54820059-54820078 | None:intergenic | 35.0% | |
| ATTGGAATATGTGGTGGTAA+AGG | + | chr1.2:54821287-54821306 | MS.gene50538:CDS | 35.0% | |
| ATTGGCAATATAACAAGGAC+AGG | - | chr1.2:54821151-54821170 | None:intergenic | 35.0% | |
| CAAATGCTTGCATTCATTTC+AGG | + | chr1.2:54821644-54821663 | MS.gene50538:intron | 35.0% | |
| CAACCCAAAACAAAAGGTAA+GGG | - | chr1.2:54818451-54818470 | None:intergenic | 35.0% | |
| CAAGATTTCTCAAACATGTG+TGG | + | chr1.2:54818012-54818031 | MS.gene50538:CDS | 35.0% | |
| CACGGTGGAAAAAAAAAAAG+GGG | - | chr1.2:54819698-54819717 | None:intergenic | 35.0% | |
| CATAGCAGTGAACCATTAAA+TGG | + | chr1.2:54818345-54818364 | MS.gene50538:CDS | 35.0% | |
| GAAAATGGCTAAGACTGATA+TGG | + | chr1.2:54820463-54820482 | MS.gene50538:CDS | 35.0% | |
| GAATATGAATTGTGGACACA+AGG | + | chr1.2:54821946-54821965 | MS.gene50538:CDS | 35.0% | |
| GAATGCAAGCATTTGATGAA+TGG | - | chr1.2:54821639-54821658 | None:intergenic | 35.0% | |
| GACAATCTACCTGATGTTAA+TGG | - | chr1.2:54818324-54818343 | None:intergenic | 35.0% | |
| GACTAACAAAGTCTACATTC+AGG | + | chr1.2:54819595-54819614 | MS.gene50538:intron | 35.0% | |
| GATCTTGATAGAAACTCCAT+TGG | - | chr1.2:54817862-54817881 | None:intergenic | 35.0% | |
| GCTCTTGTACCATTGAATAA+AGG | - | chr1.2:54820236-54820255 | None:intergenic | 35.0% | |
| GGTACTCATTTCTATGACAA+TGG | - | chr1.2:54817789-54817808 | None:intergenic | 35.0% | |
| GGTGACTGCTTAACTTTATA+AGG | - | chr1.2:54820929-54820948 | None:intergenic | 35.0% | |
| TAGAGGATGGTGAAAAAAGA+AGG | + | chr1.2:54821863-54821882 | MS.gene50538:CDS | 35.0% | |
| TAGTTTAGTTACCTCTCTTG+CGG | - | chr1.2:54818103-54818122 | None:intergenic | 35.0% | |
| TCACACAGGAAAAACAGAAA+TGG | + | chr1.2:54821994-54822013 | MS.gene50538:CDS | 35.0% | |
| TCAGGGACTAAATTGACTAA+CGG | + | chr1.2:54819549-54819568 | MS.gene50538:intron | 35.0% | |
| TCCACTACCTGACAAAAAAA+AGG | + | chr1.2:54819795-54819814 | MS.gene50538:intron | 35.0% | |
| TCCATACACCCTTTATTCAA+TGG | + | chr1.2:54820224-54820243 | MS.gene50538:CDS | 35.0% | |
| TCGAAGCTTCAACAAAATCA+AGG | + | chr1.2:54819065-54819084 | MS.gene50538:intron | 35.0% | |
| TGAGTTTGACGATGTTGTTA+AGG | + | chr1.2:54818413-54818432 | MS.gene50538:CDS | 35.0% | |
| TGGAGTTTCTATCAAGATCA+TGG | + | chr1.2:54817863-54817882 | MS.gene50538:CDS | 35.0% | |
| TTAGAAGGTAAGCAAGAAGA+AGG | - | chr1.2:54817943-54817962 | None:intergenic | 35.0% | |
| TTCTAATCGAGATTCGAACT+CGG | + | chr1.2:54820902-54820921 | MS.gene50538:intron | 35.0% | |
| TTCTTATAATAAGGACCGGA+GGG | + | chr1.2:54818941-54818960 | MS.gene50538:intron | 35.0% | |
| TTCTTTCCATTGTTTCACAC+AGG | + | chr1.2:54821980-54821999 | MS.gene50538:CDS | 35.0% | |
| TTGTGTCCATTAAATTGGGA+CGG | - | chr1.2:54819189-54819208 | None:intergenic | 35.0% | |
| TTTCTTATAATAAGGACCGG+AGG | + | chr1.2:54818940-54818959 | MS.gene50538:intron | 35.0% | |
| ! | AACCATCTTCCTACTGTTTT+AGG | - | chr1.2:54820299-54820318 | None:intergenic | 35.0% |
| ! | ACCATTGAATAAAGGGTGTA+TGG | - | chr1.2:54820228-54820247 | None:intergenic | 35.0% |
| ! | ATGTTACACATGGTTTGTCA+GGG | + | chr1.2:54821089-54821108 | MS.gene50538:intron | 35.0% |
| ! | ATTCCTATGCTTTTCTCAAG+TGG | - | chr1.2:54821269-54821288 | None:intergenic | 35.0% |
| ! | CTTGAGAAAAGCATAGGAAT+TGG | + | chr1.2:54821269-54821288 | MS.gene50538:CDS | 35.0% |
| ! | CTTGATATATGCAGCTCTAA+GGG | + | chr1.2:54821181-54821200 | MS.gene50538:intron | 35.0% |
| ! | CTTTGAACACAACTTTTGGA+TGG | + | chr1.2:54819896-54819915 | MS.gene50538:intron | 35.0% |
| ! | GTTTTTCCTGTGTGAAACAA+TGG | - | chr1.2:54821989-54822008 | None:intergenic | 35.0% |
| ! | TCCTTGTTATATTGCCAATG+TGG | + | chr1.2:54821152-54821171 | MS.gene50538:intron | 35.0% |
| ! | TGATTTTGTTGAAGCTTCGA+AGG | - | chr1.2:54819065-54819084 | None:intergenic | 35.0% |
| !! | GACTGCAACAATTGTTTCTA+AGG | - | chr1.2:54818483-54818502 | None:intergenic | 35.0% |
| !! | GCCATTTTCTCATCCTTATT+TGG | - | chr1.2:54820452-54820471 | None:intergenic | 35.0% |
| !! | GGTGTACAATTTACTTTTGC+AGG | - | chr1.2:54819751-54819770 | None:intergenic | 35.0% |
| !! | GTGTTGCCATTGTTATTTGT+TGG | - | chr1.2:54817814-54817833 | None:intergenic | 35.0% |
| !! | TGCCATTGTTATTTGTTGGA+AGG | - | chr1.2:54817810-54817829 | None:intergenic | 35.0% |
| !! | TGTTCCCTTACCTTTTGTTT+TGG | + | chr1.2:54818444-54818463 | MS.gene50538:intron | 35.0% |
| !! | TTGATATATGCAGCTCTAAG+GGG | + | chr1.2:54821182-54821201 | MS.gene50538:intron | 35.0% |
| !!! | ACCCCTTTTGAAGTATATGT+AGG | + | chr1.2:54818142-54818161 | MS.gene50538:intron | 35.0% |
| !!! | CGGAGGGAATAGTTTTTTTT+TGG | + | chr1.2:54819400-54819419 | MS.gene50538:intron | 35.0% |
| !!! | GTTAGCTCCTTTTTTTTGTC+AGG | - | chr1.2:54819805-54819824 | None:intergenic | 35.0% |
| !!! | GTTCCCTTACCTTTTGTTTT+GGG | + | chr1.2:54818445-54818464 | MS.gene50538:intron | 35.0% |
| !!! | TCCTTTTTTTTGTCAGGTAG+TGG | - | chr1.2:54819799-54819818 | None:intergenic | 35.0% |
| !!! | TCGGAGGGAGTATTTTATTA+TGG | - | chr1.2:54818809-54818828 | None:intergenic | 35.0% |
| ACATCGTCAAACTCATCAGA+AGG | - | chr1.2:54818408-54818427 | None:intergenic | 40.0% | |
| AGAGAGTCCTAGAATACCAA+TGG | + | chr1.2:54817843-54817862 | MS.gene50538:CDS | 40.0% | |
| AGAGCTGCATATATCAAGGA+AGG | - | chr1.2:54821179-54821198 | None:intergenic | 40.0% | |
| AGCAGTGAACCATTAAATGG+TGG | + | chr1.2:54818348-54818367 | MS.gene50538:CDS | 40.0% | |
| ATATCAAGGAAGGACCACAT+TGG | - | chr1.2:54821169-54821188 | None:intergenic | 40.0% | |
| ATGAAAAGCAGACATGTAGC+AGG | + | chr1.2:54821678-54821697 | MS.gene50538:CDS | 40.0% | |
| CACACATCCAACACAATATC+TGG | - | chr1.2:54821808-54821827 | None:intergenic | 40.0% | |
| CAGAACTAACAACAGAAGCA+AGG | - | chr1.2:54820565-54820584 | None:intergenic | 40.0% | |
| CAGCATGAAGTTGAGCATTA+TGG | - | chr1.2:54820361-54820380 | None:intergenic | 40.0% | |
| CCAACCCAAAACAAAAGGTA+AGG | - | chr1.2:54818452-54818471 | None:intergenic | 40.0% | |
| CCTTAGAGCTGCATATATCA+AGG | - | chr1.2:54821183-54821202 | None:intergenic | 40.0% | |
| CCTTGATATATGCAGCTCTA+AGG | + | chr1.2:54821180-54821199 | MS.gene50538:intron | 40.0% | |
| GAAAATGGGTCAGTTATTCC+GGG | + | chr1.2:54819376-54819395 | MS.gene50538:intron | 40.0% | |
| GACCTAAAACAGTAGGAAGA+TGG | + | chr1.2:54820294-54820313 | MS.gene50538:CDS | 40.0% | |
| GACTAACGAAGTCTACATTC+AGG | + | chr1.2:54819531-54819550 | MS.gene50538:intron | 40.0% | |
| GAGGAAGATACTAAACAGGT+CGG | - | chr1.2:54818752-54818771 | None:intergenic | 40.0% | |
| GAGTACTACCAGTACTTTCT+TGG | + | chr1.2:54818963-54818982 | MS.gene50538:intron | 40.0% | |
| GCAAGAGGAAGATACTAAAC+AGG | - | chr1.2:54818756-54818775 | None:intergenic | 40.0% | |
| GGATTGAAGACAGAATCAAG+AGG | + | chr1.2:54821892-54821911 | MS.gene50538:CDS | 40.0% | |
| GTAGGAAAAGACTTAAGGGA+GGG | + | chr1.2:54818160-54818179 | MS.gene50538:intron | 40.0% | |
| GTTGCGTGAATCAGAAGATA+AGG | - | chr1.2:54820037-54820056 | None:intergenic | 40.0% | |
| TATCTGTAGGTGATCTTCAC+TGG | + | chr1.2:54821524-54821543 | MS.gene50538:intron | 40.0% | |
| TCACACAAAACTCAATCCAC+CGG | + | chr1.2:54818685-54818704 | MS.gene50538:intron | 40.0% | |
| TGTAGGAAAAGACTTAAGGG+AGG | + | chr1.2:54818159-54818178 | MS.gene50538:intron | 40.0% | |
| TGTGCACAAATTTACCAGCT+TGG | + | chr1.2:54821824-54821843 | MS.gene50538:CDS | 40.0% | |
| TGTTCAGGACCTAAAACAGT+AGG | + | chr1.2:54820287-54820306 | MS.gene50538:CDS | 40.0% | |
| TTCCTCTAGCAAGAAGTTCT+TGG | - | chr1.2:54821391-54821410 | None:intergenic | 40.0% | |
| ! | ACACCACTTGAGAAAAGCAT+AGG | + | chr1.2:54821263-54821282 | MS.gene50538:CDS | 40.0% |
| ! | AGAGCTATGAGTAGTGGAAT+TGG | + | chr1.2:54820251-54820270 | MS.gene50538:CDS | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | + | chr1.2:54819429-54819448 | MS.gene50538:intron | 40.0% |
| ! | AGTCACTTTAGTCCCTGAAT+GGG | - | chr1.2:54819448-54819429 | None:intergenic | 40.0% |
| ! | ATGTGTATTTGGTTTCACGG+TGG | - | chr1.2:54819713-54819732 | None:intergenic | 40.0% |
| ! | CATGTTACACATGGTTTGTC+AGG | + | chr1.2:54821088-54821107 | MS.gene50538:intron | 40.0% |
| ! | GAAGTGTCTCCATTAACATC+AGG | + | chr1.2:54818312-54818331 | MS.gene50538:CDS | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | + | chr1.2:54819428-54819447 | MS.gene50538:intron | 40.0% |
| ! | TAGTCACTTTAGTCCCTGAA+TGG | - | chr1.2:54819447-54819428 | None:intergenic | 40.0% |
| ! | TGTTACACATGGTTTGTCAG+GGG | + | chr1.2:54821090-54821109 | MS.gene50538:intron | 40.0% |
| !! | ACTGTTTTAGGTCCTGAACA+AGG | - | chr1.2:54820287-54820306 | None:intergenic | 40.0% |
| !! | ATTGGTATTCTAGGACTCTC+TGG | - | chr1.2:54817844-54817863 | None:intergenic | 40.0% |
| !! | CAAGAGCATTGAAAGAGATG+TGG | + | chr1.2:54821222-54821241 | MS.gene50538:CDS | 40.0% |
| !! | TGATATATGCAGCTCTAAGG+GGG | + | chr1.2:54821183-54821202 | MS.gene50538:intron | 40.0% |
| !!! | CCTTACCTTTTGTTTTGGGT+TGG | + | chr1.2:54818449-54818468 | MS.gene50538:intron | 40.0% |
| !!! | CTTTTGTTTTGGGTTGGAGT+GGG | + | chr1.2:54818455-54818474 | MS.gene50538:intron | 40.0% |
| AAAAACTATTCCCTCCGTCC+CGG | - | chr1.2:54819397-54819416 | None:intergenic | 45.0% | |
| AAAACTCAATCCACCGGCAA+GGG | + | chr1.2:54818691-54818710 | MS.gene50538:intron | 45.0% | |
| ACAAATTTACCAGCTTGGCC+AGG | + | chr1.2:54821829-54821848 | MS.gene50538:CDS | 45.0% | |
| ACTAACGGAGTCTGCATTCA+GGG | + | chr1.2:54819564-54819583 | MS.gene50538:intron | 45.0% | |
| AGCCAAGAACTTCTTGCTAG+AGG | + | chr1.2:54821386-54821405 | MS.gene50538:CDS | 45.0% | |
| AGTTCCAGCACTAGTGAAAG+TGG | + | chr1.2:54821323-54821342 | MS.gene50538:CDS | 45.0% | |
| ATACTAAACAGGTCGGCCTT+AGG | - | chr1.2:54818745-54818764 | None:intergenic | 45.0% | |
| CCACTCCAACCCAAAACAAA+AGG | - | chr1.2:54818457-54818476 | None:intergenic | 45.0% | |
| CTACCTCCGTCCCAATTTAA+TGG | + | chr1.2:54819180-54819199 | MS.gene50538:intron | 45.0% | |
| CTGTCTAACAATCAGCAAGC+AGG | - | chr1.2:54819985-54820004 | None:intergenic | 45.0% | |
| GAAGGTAAGCAAGAAGAAGG+AGG | - | chr1.2:54817940-54817959 | None:intergenic | 45.0% | |
| GCTCCCTTCAGCATTTAACT+AGG | + | chr1.2:54820099-54820118 | MS.gene50538:intron | 45.0% | |
| GGTACAAGAGCTATGAGTAG+TGG | + | chr1.2:54820245-54820264 | MS.gene50538:CDS | 45.0% | |
| GTTGAAGCTGCTGAAGCAAT+GGG | + | chr1.2:54820524-54820543 | MS.gene50538:CDS | 45.0% | |
| TATGCAAAACAGTCCCTGCA+TGG | + | chr1.2:54819488-54819507 | MS.gene50538:intron | 45.0% | |
| TCATCAGAAGGAGAAATGGG+TGG | - | chr1.2:54818396-54818415 | None:intergenic | 45.0% | |
| TCCAAAAGTGAGGTTGCAAG+AGG | - | chr1.2:54818771-54818790 | None:intergenic | 45.0% | |
| TCCCTGAAATTGACCATGCA+GGG | - | chr1.2:54819504-54819523 | None:intergenic | 45.0% | |
| TCCCTGCATGGTCAATTTCA+GGG | + | chr1.2:54819500-54819519 | MS.gene50538:intron | 45.0% | |
| TGGTTGAGGTGACAATGCTT+TGG | - | chr1.2:54817911-54817930 | None:intergenic | 45.0% | |
| TGTCCATTAAATTGGGACGG+AGG | - | chr1.2:54819186-54819205 | None:intergenic | 45.0% | |
| TGTTGAAGCTGCTGAAGCAA+TGG | + | chr1.2:54820523-54820542 | MS.gene50538:CDS | 45.0% | |
| TTACTCAAACGCACTCGCAA+AGG | + | chr1.2:54821416-54821435 | MS.gene50538:CDS | 45.0% | |
| TTATATACATCGAACCGGCC+AGG | + | chr1.2:54821561-54821580 | MS.gene50538:CDS | 45.0% | |
| ! | CGCAACCAACCTTCTCATTT+TGG | + | chr1.2:54820051-54820070 | MS.gene50538:intron | 45.0% |
| ! | CTTGCTGATTGTTAGACAGC+AGG | + | chr1.2:54819986-54820005 | MS.gene50538:intron | 45.0% |
| ! | GTCACTTTAGTCCCTGAATG+GGG | + | chr1.2:54819430-54819449 | MS.gene50538:intron | 45.0% |
| ! | GTCACTTTAGTCCCTGAATG+GGG | - | chr1.2:54819449-54819430 | None:intergenic | 45.0% |
| ! | TCCTCTAAAAGATGCCTTCC+TGG | - | chr1.2:54821850-54821869 | None:intergenic | 45.0% |
| ! | TCCTCTTGCAACCTCACTTT+TGG | + | chr1.2:54818767-54818786 | MS.gene50538:intron | 45.0% |
| !! | GATATATGCAGCTCTAAGGG+GGG | + | chr1.2:54821184-54821203 | MS.gene50538:intron | 45.0% |
| !!! | CCTTTTGTTTTGGGTTGGAG+TGG | + | chr1.2:54818454-54818473 | MS.gene50538:intron | 45.0% |
| !!! | GGAAGGCATCTTTTAGAGGA+TGG | + | chr1.2:54821850-54821869 | MS.gene50538:CDS | 45.0% |
| !! | ATTATTCATATTATTTATTT+AGG | + | chr1.2:54820852-54820871 | MS.gene50538:intron | 5.0% |
| !! | TTATTCATATTATTTATTTA+GGG | + | chr1.2:54820853-54820872 | MS.gene50538:intron | 5.0% |
| !! | TTCATATATAAAAAAAATAA+AGG | - | chr1.2:54820714-54820733 | None:intergenic | 5.0% |
| AAGCAAGAAGAAGGAGGAGG+TGG | - | chr1.2:54817934-54817953 | None:intergenic | 50.0% | |
| ATGGGTCAGTTATTCCGGGA+CGG | + | chr1.2:54819380-54819399 | MS.gene50538:intron | 50.0% | |
| ATTTACCAGCTTGGCCAGGA+AGG | + | chr1.2:54821833-54821852 | MS.gene50538:CDS | 50.0% | |
| CAAAACTCAATCCACCGGCA+AGG | + | chr1.2:54818690-54818709 | MS.gene50538:intron | 50.0% | |
| CACTAGTGAAAGTGGAGGAG+AGG | + | chr1.2:54821331-54821350 | MS.gene50538:CDS | 50.0% | |
| CATGTCACAATCCGCAAGAG+AGG | + | chr1.2:54818089-54818108 | MS.gene50538:CDS | 50.0% | |
| CTAACAATCAGCAAGCAGGC+AGG | - | chr1.2:54819981-54820000 | None:intergenic | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | + | chr1.2:54819656-54819675 | MS.gene50538:intron | 50.0% | |
| GACGAATCGTTCCCCATTCA+GGG | - | chr1.2:54819675-54819656 | None:intergenic | 50.0% | |
| GACTAACGGAGTCTGCATTC+AGG | + | chr1.2:54819563-54819582 | MS.gene50538:intron | 50.0% | |
| GGCAATGCAACTCCTTGTTC+AGG | + | chr1.2:54820272-54820291 | MS.gene50538:CDS | 50.0% | |
| GGCTAAGACTGATATGGCTG+TGG | + | chr1.2:54820469-54820488 | MS.gene50538:CDS | 50.0% | |
| GGTAAGCAAGAAGAAGGAGG+AGG | - | chr1.2:54817937-54817956 | None:intergenic | 50.0% | |
| GTCCCTGAAATTGACCATGC+AGG | - | chr1.2:54819505-54819524 | None:intergenic | 50.0% | |
| GTCCCTGCATGGTCAATTTC+AGG | + | chr1.2:54819499-54819518 | MS.gene50538:intron | 50.0% | |
| TCCAGCACTAGTGAAAGTGG+AGG | + | chr1.2:54821326-54821345 | MS.gene50538:CDS | 50.0% | |
| TCCTCCACTTTCACTAGTGC+TGG | - | chr1.2:54821330-54821349 | None:intergenic | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | + | chr1.2:54819655-54819674 | MS.gene50538:intron | 50.0% | |
| TGACGAATCGTTCCCCATTC+AGG | - | chr1.2:54819674-54819655 | None:intergenic | 50.0% | |
| ! | TTTCGTGTGTGATAGCGCAG+TGG | - | chr1.2:54820950-54820969 | None:intergenic | 50.0% |
| !! | AGTACTGGTAGTACTCCCTC+CGG | - | chr1.2:54818959-54818978 | None:intergenic | 50.0% |
| !! | GCAGGCAGGTTTAAGTTGAC+AGG | - | chr1.2:54819967-54819986 | None:intergenic | 50.0% |
| !!! | GCCAGGAAGGCATCTTTTAG+AGG | + | chr1.2:54821846-54821865 | MS.gene50538:CDS | 50.0% |
| AACAGGTCGGCCTTAGGCAT+AGG | - | chr1.2:54818739-54818758 | None:intergenic | 55.0% | |
| CAAGAAGAAGGAGGAGGTGG+TGG | - | chr1.2:54817931-54817950 | None:intergenic | 55.0% | |
| GTCAGTTATTCCGGGACGGA+GGG | + | chr1.2:54819384-54819403 | MS.gene50538:intron | 55.0% | |
| AGATGCCTTCCTGGCCAAGC+TGG | - | chr1.2:54821841-54821860 | None:intergenic | 60.0% | |
| CTAACTGCTGCAGCTGCCAC+AGG | + | chr1.2:54820620-54820639 | MS.gene50538:CDS | 60.0% | |
| GGTCAGTTATTCCGGGACGG+AGG | + | chr1.2:54819383-54819402 | MS.gene50538:intron | 60.0% | |
| ! | GAAGGAGGAGGTGGTGGTTG+AGG | - | chr1.2:54817925-54817944 | None:intergenic | 60.0% |
| AATCCACCGGCAAGGGCCCT+AGG | + | chr1.2:54818698-54818717 | MS.gene50538:intron | 65.0% | |
| GCATCCCCGGCCTATGCCTA+AGG | + | chr1.2:54818726-54818745 | MS.gene50538:intron | 65.0% | |
| GGTCGGCCTTAGGCATAGGC+CGG | - | chr1.2:54818735-54818754 | None:intergenic | 65.0% | |
| GTCGGCCTTAGGCATAGGCC+GGG | - | chr1.2:54818734-54818753 | None:intergenic | 65.0% | |
| TCGGCCTTAGGCATAGGCCG+GGG | - | chr1.2:54818733-54818752 | None:intergenic | 65.0% | |
| GGCATAGGCCGGGGATGCGA+CGG | - | chr1.2:54818724-54818743 | None:intergenic | 70.0% | |
| CGACGGCCTAGGGCCCTTGC+CGG | - | chr1.2:54818707-54818726 | None:intergenic | 75.0% | |
| GCCCTAGGCCGTCGCATCCC+CGG | + | chr1.2:54818713-54818732 | MS.gene50538:intron | 75.0% | |
| GCCGGGGATGCGACGGCCTA+GGG | - | chr1.2:54818717-54818736 | None:intergenic | 75.0% | |
| ! | CGGCCTAGGGCCCTTGCCGG+TGG | - | chr1.2:54818704-54818723 | None:intergenic | 80.0% |
| ! | GGCCGGGGATGCGACGGCCT+AGG | - | chr1.2:54818718-54818737 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 54817766 | 54822023 | 54817766 | ID=MS.gene50538 |
| chr1.2 | mRNA | 54817766 | 54822023 | 54817766 | ID=MS.gene50538.t1;Parent=MS.gene50538 |
| chr1.2 | exon | 54817766 | 54818110 | 54817766 | ID=MS.gene50538.t1.exon1;Parent=MS.gene50538.t1 |
| chr1.2 | CDS | 54817766 | 54818110 | 54817766 | ID=cds.MS.gene50538.t1;Parent=MS.gene50538.t1 |
| chr1.2 | exon | 54818312 | 54818434 | 54818312 | ID=MS.gene50538.t1.exon2;Parent=MS.gene50538.t1 |
| chr1.2 | CDS | 54818312 | 54818434 | 54818312 | ID=cds.MS.gene50538.t1;Parent=MS.gene50538.t1 |
| chr1.2 | exon | 54820206 | 54820641 | 54820206 | ID=MS.gene50538.t1.exon3;Parent=MS.gene50538.t1 |
| chr1.2 | CDS | 54820206 | 54820641 | 54820206 | ID=cds.MS.gene50538.t1;Parent=MS.gene50538.t1 |
| chr1.2 | exon | 54821195 | 54821437 | 54821195 | ID=MS.gene50538.t1.exon4;Parent=MS.gene50538.t1 |
| chr1.2 | CDS | 54821195 | 54821437 | 54821195 | ID=cds.MS.gene50538.t1;Parent=MS.gene50538.t1 |
| chr1.2 | exon | 54821533 | 54821582 | 54821533 | ID=MS.gene50538.t1.exon5;Parent=MS.gene50538.t1 |
| chr1.2 | CDS | 54821533 | 54821582 | 54821533 | ID=cds.MS.gene50538.t1;Parent=MS.gene50538.t1 |
| chr1.2 | exon | 54821666 | 54821723 | 54821666 | ID=MS.gene50538.t1.exon6;Parent=MS.gene50538.t1 |
| chr1.2 | CDS | 54821666 | 54821723 | 54821666 | ID=cds.MS.gene50538.t1;Parent=MS.gene50538.t1 |
| chr1.2 | exon | 54821809 | 54822023 | 54821809 | ID=MS.gene50538.t1.exon7;Parent=MS.gene50538.t1 |
| chr1.2 | CDS | 54821809 | 54822023 | 54821809 | ID=cds.MS.gene50538.t1;Parent=MS.gene50538.t1 |
| Gene Sequence |
| Protein sequence |
