Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51534.t1 | PNY05398.1 | 100 | 171 | 0 | 0 | 1 | 171 | 1 | 171 | 1.40E-91 | 345.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51534.t1 | P46287 | 100.0 | 171 | 0 | 0 | 1 | 171 | 11 | 181 | 3.4e-94 | 345.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51534.t1 | G7IVB7 | 100.0 | 171 | 0 | 0 | 1 | 171 | 12 | 182 | 1.0e-91 | 345.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050134 | MS.gene51534 | 0.824473 | 7.92E-54 | -1.69E-46 |
| MS.gene050252 | MS.gene51534 | 0.805317 | 1.42E-49 | -1.69E-46 |
| MS.gene050791 | MS.gene51534 | 0.824142 | 9.48E-54 | -1.69E-46 |
| MS.gene050912 | MS.gene51534 | 0.856404 | 3.29E-62 | -1.69E-46 |
| MS.gene053224 | MS.gene51534 | 0.801037 | 1.09E-48 | -1.69E-46 |
| MS.gene057272 | MS.gene51534 | 0.826783 | 2.24E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51534.t1 | MTR_3g007700 | 100.000 | 171 | 0 | 0 | 1 | 171 | 12 | 182 | 7.71e-126 | 351 |
| MS.gene51534.t1 | MTR_4g080740 | 98.830 | 171 | 2 | 0 | 1 | 171 | 11 | 181 | 6.76e-125 | 348 |
| MS.gene51534.t1 | MTR_8g046140 | 98.830 | 171 | 2 | 0 | 1 | 171 | 11 | 181 | 7.22e-125 | 348 |
| MS.gene51534.t1 | MTR_3g007690 | 81.287 | 171 | 31 | 1 | 1 | 170 | 71 | 241 | 3.77e-98 | 283 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51534.t1 | AT2G42740 | 95.906 | 171 | 7 | 0 | 1 | 171 | 11 | 181 | 2.23e-121 | 340 |
| MS.gene51534.t1 | AT5G45775 | 95.322 | 171 | 8 | 0 | 1 | 171 | 11 | 181 | 9.50e-121 | 338 |
| MS.gene51534.t1 | AT4G18730 | 95.322 | 171 | 8 | 0 | 1 | 171 | 11 | 181 | 9.50e-121 | 338 |
| MS.gene51534.t1 | AT3G58700 | 95.322 | 171 | 8 | 0 | 1 | 171 | 11 | 181 | 9.50e-121 | 338 |
| MS.gene51534.t1 | AT5G45775 | 95.322 | 171 | 8 | 0 | 1 | 171 | 1 | 171 | 1.51e-120 | 337 |
Find 49 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATCCTTCCACTGGTATTTA+TGG | 0.136205 | 3.4:-3266440 | MS.gene51534:CDS |
| CAATTGCCTGGGACTTGTTT+AGG | 0.246867 | 3.4:+3266276 | None:intergenic |
| CGACAAGGCAATGCAGCTTT+TGG | 0.255810 | 3.4:-3266875 | MS.gene51534:CDS |
| TATCCAGGAACATATTGATT+TGG | 0.290604 | 3.4:-3266779 | MS.gene51534:CDS |
| TTCAGTGATACCGGGTGTTT+TGG | 0.295806 | 3.4:-3266808 | MS.gene51534:CDS |
| TGCACTTTGATTTCCCTCAT+TGG | 0.303574 | 3.4:+3268566 | None:intergenic |
| GCATGCTACGTCACTGTTAG+AGG | 0.353505 | 3.4:-3266898 | MS.gene51534:CDS |
| ATCCAGGAACATATTGATTT+GGG | 0.366765 | 3.4:-3266778 | MS.gene51534:CDS |
| TATGGATTTCTTTGTTGTCT+TGG | 0.372237 | 3.4:-3266417 | MS.gene51534:CDS |
| TTTAACTTGGAACCACTTCA+TGG | 0.385179 | 3.4:+3266313 | None:intergenic |
| TTCCCAAATCAATATGTTCC+TGG | 0.396627 | 3.4:+3266776 | None:intergenic |
| TCCGTTCCTTTGGTATTAGA+AGG | 0.399311 | 3.4:-3266933 | MS.gene51534:CDS |
| AGAAAATACCTTAGCGGCTC+TGG | 0.400111 | 3.4:+3268496 | None:intergenic |
| TTCCACTGGTATTTATGGTA+TGG | 0.405174 | 3.4:-3266435 | MS.gene51534:CDS |
| AAAATACCTTTGGAGAAAAC+AGG | 0.431508 | 3.4:+3268370 | None:intergenic |
| AGGTACACGGTCCGTTCCTT+TGG | 0.433646 | 3.4:-3266943 | MS.gene51534:CDS |
| AGGAGAAACTTCAGTGATAC+CGG | 0.455510 | 3.4:-3266817 | MS.gene51534:CDS |
| GATCTCACTAAACAATTGCC+TGG | 0.468826 | 3.4:+3266264 | None:intergenic |
| TCACACCTTCATATTTAACT+TGG | 0.469248 | 3.4:+3266300 | None:intergenic |
| TTTGTTGTCTTGGAGCGCCC+TGG | 0.474962 | 3.4:-3266407 | MS.gene51534:CDS |
| AACATCTCCGTCGGTGAAAG+TGG | 0.484770 | 3.4:-3268530 | MS.gene51534:CDS |
| CGACGTCCCACACGATAACC+AGG | 0.485872 | 3.4:+3266389 | None:intergenic |
| CGTCCTTTGTGACACGATGT+TGG | 0.505609 | 3.4:+3266339 | None:intergenic |
| TTCATTCCTTCTAATACCAA+AGG | 0.519643 | 3.4:+3266927 | None:intergenic |
| CGTAGATGCAAGGCAAGAGT+TGG | 0.526727 | 3.4:-3266365 | MS.gene51534:CDS |
| TCGTCTCACCAGAGCCGCTA+AGG | 0.538952 | 3.4:-3268504 | MS.gene51534:intron |
| GGAGAGCGGTTTGAAGGTCA+AGG | 0.545050 | 3.4:-3266854 | MS.gene51534:CDS |
| ATACTGAGAAAATACCTTAG+CGG | 0.552318 | 3.4:+3268490 | None:intergenic |
| GAGCGCCCTGGTTATCGTGT+GGG | 0.552380 | 3.4:-3266395 | MS.gene51534:CDS |
| TTCAGGTATGATCCTTCCAC+TGG | 0.557425 | 3.4:-3266449 | MS.gene51534:intron |
| TGGTTCCAAGTTAAATATGA+AGG | 0.567557 | 3.4:-3266305 | MS.gene51534:CDS |
| TCAAGGAATATGAGCTGTTG+AGG | 0.569136 | 3.4:-3266837 | MS.gene51534:CDS |
| GGAGCGCCCTGGTTATCGTG+TGG | 0.572642 | 3.4:-3266396 | MS.gene51534:CDS |
| ATCTCACTAAACAATTGCCT+GGG | 0.574406 | 3.4:+3266265 | None:intergenic |
| TAGGTTCTTGAACAGCTAAG+TGG | 0.586306 | 3.4:-3268400 | MS.gene51534:CDS |
| TGTGATCCTAAACAAGTCCC+AGG | 0.593737 | 3.4:-3266282 | MS.gene51534:CDS |
| TCCTTCTAATACCAAAGGAA+CGG | 0.611594 | 3.4:+3266932 | None:intergenic |
| CAAAGGACGATGCCATGAAG+TGG | 0.617548 | 3.4:-3266325 | MS.gene51534:CDS |
| ATCCATACCATAAATACCAG+TGG | 0.620651 | 3.4:+3266433 | None:intergenic |
| CTTATTGACAGCTAGGTACA+CGG | 0.623398 | 3.4:-3266956 | MS.gene51534:intron |
| CTTGTACTCAACATCTCCGT+CGG | 0.623554 | 3.4:-3268539 | MS.gene51534:CDS |
| CGTCACTGTTAGAGGCGACA+AGG | 0.626392 | 3.4:-3266890 | MS.gene51534:CDS |
| GGGACGTCGTCGTAGATGCA+AGG | 0.631426 | 3.4:-3266375 | MS.gene51534:CDS |
| ATACCATAAATACCAGTGGA+AGG | 0.634245 | 3.4:+3266437 | None:intergenic |
| ACGATCTCCACTTTCACCGA+CGG | 0.653039 | 3.4:+3268523 | None:intergenic |
| GGAGAAACTTCAGTGATACC+GGG | 0.660930 | 3.4:-3266816 | MS.gene51534:CDS |
| GATACCGAAGCCAAAACACC+CGG | 0.661477 | 3.4:+3266798 | None:intergenic |
| AATCCAACATCGTGTCACAA+AGG | 0.679828 | 3.4:-3266342 | MS.gene51534:CDS |
| GACGTCCCACACGATAACCA+GGG | 0.726452 | 3.4:+3266390 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACAAAAAAATATATACAA+AGG | + | chr3.4:3268301-3268320 | None:intergenic | 10.0% |
| !! | TAAATTAAAAAAAATACCTT+TGG | + | chr3.4:3266477-3266496 | None:intergenic | 10.0% |
| !! | TTTATTTGAAGAAAAATATT+CGG | - | chr3.4:3268241-3268260 | MS.gene51534:intron | 10.0% |
| !!! | AAAAAAACATTAACTTATTT+TGG | - | chr3.4:3267494-3267513 | MS.gene51534:intron | 10.0% |
| !!! | AATATTTTTCTTCAAATAAA+AGG | + | chr3.4:3268241-3268260 | None:intergenic | 10.0% |
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr3.4:3266989-3267008 | MS.gene51534:intron | 100.0% |
| !! | AAAAATATATACAAAGGAAA+AGG | + | chr3.4:3268295-3268314 | None:intergenic | 15.0% |
| !!! | AAAATATATGTACAAGTTTT+TGG | + | chr3.4:3266720-3266739 | None:intergenic | 15.0% |
| !!! | CATAATTTTAAACATCAATA+TGG | + | chr3.4:3268364-3268383 | None:intergenic | 15.0% |
| !!! | GATTTTATCATATTATTTGT+AGG | - | chr3.4:3267321-3267340 | MS.gene51534:intron | 15.0% |
| !!! | TTTTTTTTTGACAAAAACAA+AGG | + | chr3.4:3267475-3267494 | None:intergenic | 15.0% |
| !! | AAGAAAAAATTACTTCATAC+AGG | - | chr3.4:3267533-3267552 | MS.gene51534:intron | 20.0% |
| !! | ACAAATTCAATCAATGATTT+GGG | - | chr3.4:3267254-3267273 | MS.gene51534:intron | 20.0% |
| !! | ACTTAGAAATACATATTTCA+AGG | - | chr3.4:3267732-3267751 | MS.gene51534:intron | 20.0% |
| !! | ACTTATTTAGATTGAAAGAA+AGG | + | chr3.4:3267071-3267090 | None:intergenic | 20.0% |
| !! | ATACTAATGTTATCAAAAAG+TGG | - | chr3.4:3267603-3267622 | MS.gene51534:intron | 20.0% |
| !! | CTTATTTAGATTGAAAGAAA+GGG | + | chr3.4:3267070-3267089 | None:intergenic | 20.0% |
| !! | TTATTTAGATTGAAAGAAAG+GGG | + | chr3.4:3267069-3267088 | None:intergenic | 20.0% |
| !!! | ATGAAGTAATTTTTTCTTTC+CGG | + | chr3.4:3267531-3267550 | None:intergenic | 20.0% |
| !!! | TCAATATTTGCTAGTTTTTT+AGG | - | chr3.4:3266688-3266707 | MS.gene51534:intron | 20.0% |
| ! | AAGAATTCATTTGCAATCAA+TGG | - | chr3.4:3266852-3266871 | MS.gene51534:CDS | 25.0% |
| ! | AATATCGCTAAAAACGTAAA+GGG | + | chr3.4:3267402-3267421 | None:intergenic | 25.0% |
| ! | AGAAAAAAACTTGATGTATG+TGG | + | chr3.4:3267099-3267118 | None:intergenic | 25.0% |
| ! | AGGTTAGTAATGAAATTGAA+AGG | + | chr3.4:3266399-3266418 | None:intergenic | 25.0% |
| ! | CACAAATTCAATCAATGATT+TGG | - | chr3.4:3267253-3267272 | MS.gene51534:intron | 25.0% |
| ! | GGTATCATATCTTTAACTAT+TGG | + | chr3.4:3266786-3266805 | None:intergenic | 25.0% |
| ! | GTTGTTTACTTATGTTTCAA+AGG | - | chr3.4:3268324-3268343 | MS.gene51534:intron | 25.0% |
| ! | TAGTAATGAAATTGAAAGGA+AGG | + | chr3.4:3266395-3266414 | None:intergenic | 25.0% |
| ! | TCTCACTAAAATTGAGTATT+TGG | + | chr3.4:3266923-3266942 | None:intergenic | 25.0% |
| ! | TCTTAGATTAGATAGATAGA+TGG | + | chr3.4:3266836-3266855 | None:intergenic | 25.0% |
| !! | ATATGTATTTCTAAGTGCAA+CGG | + | chr3.4:3267728-3267747 | None:intergenic | 25.0% |
| !! | GATGTTTAAAATTATGCTTC+AGG | - | chr3.4:3268368-3268387 | MS.gene51534:intron | 25.0% |
| !! | GTGTCTTAAAATAGAGTTTT+TGG | - | chr3.4:3267674-3267693 | MS.gene51534:intron | 25.0% |
| !!! | TGAAGTAATTTTTTCTTTCC+GGG | + | chr3.4:3267530-3267549 | None:intergenic | 25.0% |
| ACAGTTCTTTACATGTGTAT+TGG | - | chr3.4:3267805-3267824 | MS.gene51534:intron | 30.0% | |
| ACATGTGTATTGGATATCTT+GGG | - | chr3.4:3267815-3267834 | MS.gene51534:intron | 30.0% | |
| ACCTATGAGAAAGATAAAAC+AGG | + | chr3.4:3266419-3266438 | None:intergenic | 30.0% | |
| AGCGATATTGATCATGTTAT+TGG | - | chr3.4:3267413-3267432 | MS.gene51534:intron | 30.0% | |
| ATACTGAGAAAATACCTTAG+CGG | + | chr3.4:3266347-3266366 | None:intergenic | 30.0% | |
| CAATATCGCTAAAAACGTAA+AGG | + | chr3.4:3267403-3267422 | None:intergenic | 30.0% | |
| GAGTCAAATTCTCATCATTT+AGG | - | chr3.4:3267759-3267778 | MS.gene51534:intron | 30.0% | |
| GATAAACCACAATTGAACTT+AGG | + | chr3.4:3268210-3268229 | None:intergenic | 30.0% | |
| TACATGTGTATTGGATATCT+TGG | - | chr3.4:3267814-3267833 | MS.gene51534:intron | 30.0% | |
| TAGAAAATGAAGAACCAATC+AGG | + | chr3.4:3267853-3267872 | None:intergenic | 30.0% | |
| TCACACCTTCATATTTAACT+TGG | + | chr3.4:3268537-3268556 | None:intergenic | 30.0% | |
| TGGTTCCAAGTTAAATATGA+AGG | - | chr3.4:3268529-3268548 | MS.gene51534:CDS | 30.0% | |
| TTCATTCCTTCTAATACCAA+AGG | + | chr3.4:3267910-3267929 | None:intergenic | 30.0% | |
| ! | AAAATACCTTTGGAGAAAAC+AGG | + | chr3.4:3266467-3266486 | None:intergenic | 30.0% |
| ! | ACCTGTTTTATCTTTCTCAT+AGG | - | chr3.4:3266415-3266434 | MS.gene51534:CDS | 30.0% |
| ! | TATCCAGGAACATATTGATT+TGG | - | chr3.4:3268055-3268074 | MS.gene51534:intron | 30.0% |
| ! | TATGGATTTCTTTGTTGTCT+TGG | - | chr3.4:3268417-3268436 | MS.gene51534:intron | 30.0% |
| !! | ATCCAGGAACATATTGATTT+GGG | - | chr3.4:3268056-3268075 | MS.gene51534:intron | 30.0% |
| !!! | AACTCTATTTTAAGACACCA+TGG | + | chr3.4:3267672-3267691 | None:intergenic | 30.0% |
| !!! | TATTTTGGTTGACAAATTCC+CGG | - | chr3.4:3267509-3267528 | MS.gene51534:intron | 30.0% |
| ATACCATAAATACCAGTGGA+AGG | + | chr3.4:3268400-3268419 | None:intergenic | 35.0% | |
| ATCCATACCATAAATACCAG+TGG | + | chr3.4:3268404-3268423 | None:intergenic | 35.0% | |
| ATGTACAGAACATGTCTACT+AGG | + | chr3.4:3266585-3266604 | None:intergenic | 35.0% | |
| CCCAAGTTAATAGCATTCAA+CGG | + | chr3.4:3267354-3267373 | None:intergenic | 35.0% | |
| CCGTTGAATGCTATTAACTT+GGG | - | chr3.4:3267351-3267370 | MS.gene51534:intron | 35.0% | |
| TATTGTGCTTATTGACAGCT+AGG | - | chr3.4:3267871-3267890 | MS.gene51534:intron | 35.0% | |
| TCCTTCTAATACCAAAGGAA+CGG | + | chr3.4:3267905-3267924 | None:intergenic | 35.0% | |
| TGTTGTTGACAATGTGTTGA+AGG | + | chr3.4:3266878-3266897 | None:intergenic | 35.0% | |
| TTCCACTGGTATTTATGGTA+TGG | - | chr3.4:3268399-3268418 | MS.gene51534:CDS | 35.0% | |
| TTCCCAAATCAATATGTTCC+TGG | + | chr3.4:3268061-3268080 | None:intergenic | 35.0% | |
| !! | ATTTCGCATCTTTTGTTGTG+CGG | - | chr3.4:3267190-3267209 | MS.gene51534:intron | 35.0% |
| !! | TTTAACTTGGAACCACTTCA+TGG | + | chr3.4:3268524-3268543 | None:intergenic | 35.0% |
| !!! | ATGGAGTTTTTTATTGCCAC+CGG | - | chr3.4:3267641-3267660 | MS.gene51534:intron | 35.0% |
| AACTCCATCGCAATCTTCTA+TGG | + | chr3.4:3267629-3267648 | None:intergenic | 40.0% | |
| AATCCAACATCGTGTCACAA+AGG | - | chr3.4:3268492-3268511 | MS.gene51534:intron | 40.0% | |
| AGGAGAAACTTCAGTGATAC+CGG | - | chr3.4:3268017-3268036 | MS.gene51534:intron | 40.0% | |
| CCTATCTACTATAGTGCACA+CGG | - | chr3.4:3266806-3266825 | MS.gene51534:CDS | 40.0% | |
| CGTGTGCACTATAGTAGATA+GGG | + | chr3.4:3266808-3266827 | None:intergenic | 40.0% | |
| CTTATTGACAGCTAGGTACA+CGG | - | chr3.4:3267878-3267897 | MS.gene51534:intron | 40.0% | |
| GATCCTTCCACTGGTATTTA+TGG | - | chr3.4:3268394-3268413 | MS.gene51534:CDS | 40.0% | |
| GCCGTTGAATGCTATTAACT+TGG | - | chr3.4:3267350-3267369 | MS.gene51534:intron | 40.0% | |
| GCTCTACCTAAGTTCAATTG+TGG | - | chr3.4:3268201-3268220 | MS.gene51534:intron | 40.0% | |
| GGTTGTGTTTGTATCCTGAT+TGG | - | chr3.4:3267836-3267855 | MS.gene51534:intron | 40.0% | |
| GTGTGCACTATAGTAGATAG+GGG | + | chr3.4:3266807-3266826 | None:intergenic | 40.0% | |
| TAGGTTCTTGAACAGCTAAG+TGG | - | chr3.4:3266434-3266453 | MS.gene51534:CDS | 40.0% | |
| TCAAGGAATATGAGCTGTTG+AGG | - | chr3.4:3267997-3268016 | MS.gene51534:intron | 40.0% | |
| TCCGTTCCTTTGGTATTAGA+AGG | - | chr3.4:3267901-3267920 | MS.gene51534:intron | 40.0% | |
| ! | CAAACACCTGTTTTCTCCAA+AGG | - | chr3.4:3266458-3266477 | MS.gene51534:intron | 40.0% |
| AAAGGGGAAAAGAGATGCAG+AGG | + | chr3.4:3267053-3267072 | None:intergenic | 45.0% | |
| AAGGGGAAAAGAGATGCAGA+GGG | + | chr3.4:3267052-3267071 | None:intergenic | 45.0% | |
| AGAAAATACCTTAGCGGCTC+TGG | + | chr3.4:3266341-3266360 | None:intergenic | 45.0% | |
| CCGTGTGCACTATAGTAGAT+AGG | + | chr3.4:3266809-3266828 | None:intergenic | 45.0% | |
| CTTCCTCTTTCACACATCGA+GGG | - | chr3.4:3266969-3266988 | MS.gene51534:intron | 45.0% | |
| CTTGTACTCAACATCTCCGT+CGG | - | chr3.4:3266295-3266314 | MS.gene51534:CDS | 45.0% | |
| GGAGAAACTTCAGTGATACC+GGG | - | chr3.4:3268018-3268037 | MS.gene51534:intron | 45.0% | |
| TCTTCCTCTTTCACACATCG+AGG | - | chr3.4:3266968-3266987 | MS.gene51534:intron | 45.0% | |
| TGTGATCCTAAACAAGTCCC+AGG | - | chr3.4:3268552-3268571 | MS.gene51534:CDS | 45.0% | |
| TTAAGACACCATGGCAGAAC+CGG | + | chr3.4:3267663-3267682 | None:intergenic | 45.0% | |
| TTCAGGTATGATCCTTCCAC+TGG | - | chr3.4:3268385-3268404 | MS.gene51534:CDS | 45.0% | |
| TTCCTCTTTCACACATCGAG+GGG | - | chr3.4:3266970-3266989 | MS.gene51534:intron | 45.0% | |
| ! | ATCCAGAAGCATGGGTATTC+TGG | - | chr3.4:3267291-3267310 | MS.gene51534:intron | 45.0% |
| ! | CAATTGCCTGGGACTTGTTT+AGG | + | chr3.4:3268561-3268580 | None:intergenic | 45.0% |
| ! | TTCAGTGATACCGGGTGTTT+TGG | - | chr3.4:3268026-3268045 | MS.gene51534:intron | 45.0% |
| !! | ATAAAAATTAAATAATAGAA+AGG | + | chr3.4:3266519-3266538 | None:intergenic | 5.0% |
| !!! | TTTATTATATTTTTTTTTTC+TGG | - | chr3.4:3266610-3266629 | MS.gene51534:intron | 5.0% |
| AACATCTCCGTCGGTGAAAG+TGG | - | chr3.4:3266304-3266323 | MS.gene51534:CDS | 50.0% | |
| ACGATCTCCACTTTCACCGA+CGG | + | chr3.4:3266314-3266333 | None:intergenic | 50.0% | |
| ACGTTGCAGATCCAGAAGCA+TGG | - | chr3.4:3267282-3267301 | MS.gene51534:intron | 50.0% | |
| AGATGCAGAGGGGTGATTCT+AGG | + | chr3.4:3267041-3267060 | None:intergenic | 50.0% | |
| AGGGGAAAAGAGATGCAGAG+GGG | + | chr3.4:3267051-3267070 | None:intergenic | 50.0% | |
| CAAAGGACGATGCCATGAAG+TGG | - | chr3.4:3268509-3268528 | MS.gene51534:CDS | 50.0% | |
| CACCAGAATACCCATGCTTC+TGG | + | chr3.4:3267296-3267315 | None:intergenic | 50.0% | |
| CGTAGATGCAAGGCAAGAGT+TGG | - | chr3.4:3268469-3268488 | MS.gene51534:intron | 50.0% | |
| CGTCCTTTGTGACACGATGT+TGG | + | chr3.4:3268498-3268517 | None:intergenic | 50.0% | |
| GATACCGAAGCCAAAACACC+CGG | + | chr3.4:3268039-3268058 | None:intergenic | 50.0% | |
| GATTGCAGAAGACGGACCAT+GGG | + | chr3.4:3267706-3267725 | None:intergenic | 50.0% | |
| GCATGCTACGTCACTGTTAG+AGG | - | chr3.4:3267936-3267955 | MS.gene51534:intron | 50.0% | |
| GTGGCCATAGAAGATTGCGA+TGG | - | chr3.4:3267622-3267641 | MS.gene51534:intron | 50.0% | |
| TCCTCTTTCACACATCGAGG+GGG | - | chr3.4:3266971-3266990 | MS.gene51534:intron | 50.0% | |
| ! | CGACAAGGCAATGCAGCTTT+TGG | - | chr3.4:3267959-3267978 | MS.gene51534:intron | 50.0% |
| ! | CGTTGCAGATCCAGAAGCAT+GGG | - | chr3.4:3267283-3267302 | MS.gene51534:intron | 50.0% |
| ! | GTGTTGTTCGTCGTCTTGTG+CGG | - | chr3.4:3267158-3267177 | MS.gene51534:intron | 50.0% |
| !! | GCAATGCAGCTTTTGGAGAG+CGG | - | chr3.4:3267966-3267985 | MS.gene51534:intron | 50.0% |
| !! | GCTTTTGGAGAGCGGTTTGA+AGG | - | chr3.4:3267974-3267993 | MS.gene51534:intron | 50.0% |
| !! | GTGCAACGGATTGCAGAAGA+CGG | + | chr3.4:3267714-3267733 | None:intergenic | 50.0% |
| !!! | GAGTTTTTGGCCTTTGCCCA+TGG | - | chr3.4:3267687-3267706 | MS.gene51534:intron | 50.0% |
| !!! | GATACCGGGTGTTTTGGCTT+CGG | - | chr3.4:3268032-3268051 | MS.gene51534:intron | 50.0% |
| !!! | GTGTTTTGGCTTCGGTATCC+AGG | - | chr3.4:3268040-3268059 | MS.gene51534:intron | 50.0% |
| AGAAGACGGACCATGGGCAA+AGG | + | chr3.4:3267700-3267719 | None:intergenic | 55.0% | |
| AGGTACACGGTCCGTTCCTT+TGG | - | chr3.4:3267891-3267910 | MS.gene51534:intron | 55.0% | |
| CCTCTTTCACACATCGAGGG+GGG | - | chr3.4:3266972-3266991 | MS.gene51534:intron | 55.0% | |
| CGTCACTGTTAGAGGCGACA+AGG | - | chr3.4:3267944-3267963 | MS.gene51534:intron | 55.0% | |
| CTCTTTCACACATCGAGGGG+GGG | - | chr3.4:3266973-3266992 | MS.gene51534:intron | 55.0% | |
| GACGTCCCACACGATAACCA+GGG | + | chr3.4:3268447-3268466 | None:intergenic | 55.0% | |
| GGAGAGCGGTTTGAAGGTCA+AGG | - | chr3.4:3267980-3267999 | MS.gene51534:intron | 55.0% | |
| GGATTGCAGAAGACGGACCA+TGG | + | chr3.4:3267707-3267726 | None:intergenic | 55.0% | |
| TCTTTCACACATCGAGGGGG+GGG | - | chr3.4:3266974-3266993 | MS.gene51534:intron | 55.0% | |
| ! | TTTGTTGTCTTGGAGCGCCC+TGG | - | chr3.4:3268427-3268446 | MS.gene51534:intron | 55.0% |
| !! | TATTGCCACCGGTTCTGCCA+TGG | - | chr3.4:3267652-3267671 | MS.gene51534:intron | 55.0% |
| AGACACCATGGCAGAACCGG+TGG | + | chr3.4:3267660-3267679 | None:intergenic | 60.0% | |
| CCCCCCTCGATGTGTGAAAG+AGG | + | chr3.4:3266975-3266994 | None:intergenic | 60.0% | |
| CGACGTCCCACACGATAACC+AGG | + | chr3.4:3268448-3268467 | None:intergenic | 60.0% | |
| CTTTCACACATCGAGGGGGG+GGG | - | chr3.4:3266975-3266994 | MS.gene51534:intron | 60.0% | |
| GAGCGCCCTGGTTATCGTGT+GGG | - | chr3.4:3268439-3268458 | MS.gene51534:intron | 60.0% | |
| GGGACGTCGTCGTAGATGCA+AGG | - | chr3.4:3268459-3268478 | MS.gene51534:intron | 60.0% | |
| TCGTCTCACCAGAGCCGCTA+AGG | - | chr3.4:3266330-3266349 | MS.gene51534:CDS | 60.0% | |
| TTTCACACATCGAGGGGGGG+GGG | - | chr3.4:3266976-3266995 | MS.gene51534:intron | 60.0% | |
| TTCACACATCGAGGGGGGGG+GGG | - | chr3.4:3266977-3266996 | MS.gene51534:intron | 65.0% | |
| ! | GGAGCGCCCTGGTTATCGTG+TGG | - | chr3.4:3268438-3268457 | MS.gene51534:intron | 65.0% |
| TCACACATCGAGGGGGGGGG+GGG | - | chr3.4:3266978-3266997 | MS.gene51534:intron | 70.0% | |
| ! | GGGGGGGGGGGGGTGATTTT+AGG | - | chr3.4:3267004-3267023 | MS.gene51534:intron | 70.0% |
| ACACATCGAGGGGGGGGGGG+GGG | - | chr3.4:3266980-3266999 | MS.gene51534:intron | 75.0% | |
| CACACATCGAGGGGGGGGGG+GGG | - | chr3.4:3266979-3266998 | MS.gene51534:intron | 75.0% | |
| ! | ACATCGAGGGGGGGGGGGGG+GGG | - | chr3.4:3266982-3267001 | MS.gene51534:intron | 80.0% |
| ! | CACATCGAGGGGGGGGGGGG+GGG | - | chr3.4:3266981-3267000 | MS.gene51534:intron | 80.0% |
| ! | ATCGAGGGGGGGGGGGGGGG+GGG | - | chr3.4:3266984-3267003 | MS.gene51534:intron | 85.0% |
| ! | CATCGAGGGGGGGGGGGGGG+GGG | - | chr3.4:3266983-3267002 | MS.gene51534:intron | 85.0% |
| ! | TCGAGGGGGGGGGGGGGGGG+GGG | - | chr3.4:3266985-3267004 | MS.gene51534:intron | 90.0% |
| ! | AGGGGGGGGGGGGGGGGGGG+GGG | - | chr3.4:3266988-3267007 | MS.gene51534:intron | 95.0% |
| ! | CGAGGGGGGGGGGGGGGGGG+GGG | - | chr3.4:3266986-3267005 | MS.gene51534:intron | 95.0% |
| ! | GAGGGGGGGGGGGGGGGGGG+GGG | - | chr3.4:3266987-3267006 | MS.gene51534:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 3266271 | 3268585 | 3266271 | ID=MS.gene51534 |
| chr3.4 | mRNA | 3266271 | 3268585 | 3266271 | ID=MS.gene51534.t1;Parent=MS.gene51534 |
| chr3.4 | exon | 3268505 | 3268585 | 3268505 | ID=MS.gene51534.t1.exon1;Parent=MS.gene51534.t1 |
| chr3.4 | CDS | 3268505 | 3268585 | 3268505 | ID=cds.MS.gene51534.t1;Parent=MS.gene51534.t1 |
| chr3.4 | exon | 3268377 | 3268419 | 3268377 | ID=MS.gene51534.t1.exon2;Parent=MS.gene51534.t1 |
| chr3.4 | CDS | 3268377 | 3268419 | 3268377 | ID=cds.MS.gene51534.t1;Parent=MS.gene51534.t1 |
| chr3.4 | exon | 3266772 | 3266967 | 3266772 | ID=MS.gene51534.t1.exon3;Parent=MS.gene51534.t1 |
| chr3.4 | CDS | 3266772 | 3266967 | 3266772 | ID=cds.MS.gene51534.t1;Parent=MS.gene51534.t1 |
| chr3.4 | exon | 3266271 | 3266466 | 3266271 | ID=MS.gene51534.t1.exon4;Parent=MS.gene51534.t1 |
| chr3.4 | CDS | 3266271 | 3266466 | 3266271 | ID=cds.MS.gene51534.t1;Parent=MS.gene51534.t1 |
| Gene Sequence |
| Protein sequence |
