Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51999.t1 | XP_003625428.1 | 96.6 | 388 | 13 | 0 | 1 | 388 | 237 | 624 | 1.10E-173 | 619.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51999.t1 | Q9C950 | 56.3 | 382 | 167 | 0 | 7 | 388 | 262 | 643 | 9.6e-113 | 408.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51999.t1 | G7KYI5 | 96.6 | 388 | 13 | 0 | 1 | 388 | 237 | 624 | 8.2e-174 | 619.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene51999 | 0.818998 | 1.46E-52 | -1.69E-46 |
| MS.gene050654 | MS.gene51999 | 0.802926 | 4.45E-49 | -1.69E-46 |
| MS.gene050689 | MS.gene51999 | 0.804381 | 2.22E-49 | -1.69E-46 |
| MS.gene050941 | MS.gene51999 | 0.804657 | 1.94E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene51999 | 0.800445 | 1.44E-48 | -1.69E-46 |
| MS.gene053008 | MS.gene51999 | 0.820855 | 5.50E-53 | -1.69E-46 |
| MS.gene056480 | MS.gene51999 | 0.801418 | 9.09E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene51999 | 0.818173 | 2.25E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene51999 | 0.812971 | 3.24E-51 | -1.69E-46 |
| MS.gene058399 | MS.gene51999 | 0.809256 | 2.07E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene51999 | 0.800247 | 1.58E-48 | -1.69E-46 |
| MS.gene06052 | MS.gene51999 | 0.806316 | 8.73E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene51999 | 0.811082 | 8.36E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51999.t1 | MTR_7g099060 | 96.392 | 388 | 14 | 0 | 1 | 388 | 237 | 624 | 0.0 | 778 |
| MS.gene51999.t1 | MTR_4g089070 | 72.843 | 394 | 100 | 2 | 1 | 388 | 263 | 655 | 0.0 | 585 |
| MS.gene51999.t1 | MTR_4g032885 | 59.948 | 387 | 142 | 4 | 6 | 388 | 270 | 647 | 2.07e-162 | 470 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51999.t1 | AT1G61040 | 66.927 | 384 | 123 | 2 | 7 | 388 | 262 | 643 | 0.0 | 518 |
| MS.gene51999.t1 | AT1G61040 | 66.927 | 384 | 123 | 2 | 7 | 388 | 262 | 643 | 0.0 | 518 |
| MS.gene51999.t1 | AT1G61040 | 66.927 | 384 | 123 | 2 | 7 | 388 | 262 | 643 | 0.0 | 518 |
Find 111 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACTTACAAAATGGTTTA+TGG | 0.170699 | 3.3:+6365819 | MS.gene51999:CDS |
| CGTCCTTCTCCCGAGATTTC+CGG | 0.188455 | 3.3:-6366365 | None:intergenic |
| GGGAGTTCAGGCAGGGTTTA+TGG | 0.216936 | 3.3:+6366788 | MS.gene51999:CDS |
| GCTTTCAATGCTTTATTAAC+TGG | 0.248153 | 3.3:-6366462 | None:intergenic |
| TGCCACATTGCTAGCGATAT+TGG | 0.272264 | 3.3:-6366747 | None:intergenic |
| CAAGGTCAAAACTTACAAAA+TGG | 0.282281 | 3.3:+6365812 | MS.gene51999:CDS |
| CAGAGAATTGAAGAAGTTGT+TGG | 0.303542 | 3.3:+6366819 | MS.gene51999:CDS |
| TTCTCAGCTGCAACATTTAG+TGG | 0.306966 | 3.3:-6366246 | None:intergenic |
| GTCCTTCTCCCGAGATTTCC+GGG | 0.324137 | 3.3:-6366364 | None:intergenic |
| TGGTGGAGCGCAGGGAGTTC+AGG | 0.326248 | 3.3:+6366776 | MS.gene51999:CDS |
| GACGGCCACTGCCGAGGCTT+TGG | 0.334682 | 3.3:+6366635 | MS.gene51999:CDS |
| TGATTGTTGGTTGTTTCGTT+AGG | 0.335264 | 3.3:+6365860 | MS.gene51999:CDS |
| GAGGCTTTGGAAGCTGCTGC+TGG | 0.336521 | 3.3:+6366648 | MS.gene51999:CDS |
| TTGGAAGCTGCTGCTGGTGC+TGG | 0.337203 | 3.3:+6366654 | MS.gene51999:CDS |
| CTAGTCCATCTCCTTGAAAA+AGG | 0.345767 | 3.3:-6366504 | None:intergenic |
| TCTAATTTATACAGTCGATT+AGG | 0.352085 | 3.3:-6365955 | None:intergenic |
| GACTCTGTTCCTTCATCCAC+TGG | 0.384610 | 3.3:-6366699 | None:intergenic |
| CCAGACAAAACTGCAAGAAT+TGG | 0.386133 | 3.3:+6366335 | MS.gene51999:CDS |
| CTCTTCTAACATCTGCTTCA+CGG | 0.393437 | 3.3:-6366202 | None:intergenic |
| CTGAGATGAACAGAAAGAAC+AGG | 0.394551 | 3.3:+6366406 | MS.gene51999:CDS |
| GGAGCGCAGGGAGTTCAGGC+AGG | 0.411409 | 3.3:+6366780 | MS.gene51999:CDS |
| GCAGCTGGAAATAATACTTC+TGG | 0.411995 | 3.3:+6366567 | MS.gene51999:CDS |
| TCTGGTGGTGCAGTGGGTGA+TGG | 0.416049 | 3.3:+6366585 | MS.gene51999:CDS |
| ACAAGTACTTGAATGTTGTC+TGG | 0.416298 | 3.3:+6365992 | MS.gene51999:CDS |
| TGTTTCGTTAGGGTTGGTAT+TGG | 0.420135 | 3.3:+6365871 | MS.gene51999:CDS |
| CTCTGCTGCGAGGTGGCAAA+TGG | 0.421789 | 3.3:+6366026 | MS.gene51999:CDS |
| GGACCGGTTGAAAAGGGAAT+TGG | 0.431061 | 3.3:+6366269 | MS.gene51999:CDS |
| CCAGCTGCAGCCTCTTCAGC+CGG | 0.436278 | 3.3:-6366552 | None:intergenic |
| CTGAGAAGGACCGGTTGAAA+AGG | 0.436446 | 3.3:+6366262 | MS.gene51999:CDS |
| GATGGAGGCTGCAATGGGAT+TGG | 0.437943 | 3.3:+6366603 | MS.gene51999:CDS |
| GGAGTTTAAACAGTGGGTTA+AGG | 0.439170 | 3.3:+6366080 | MS.gene51999:CDS |
| CTAGCAATGTGGCAAAAGTT+TGG | 0.440126 | 3.3:+6366756 | MS.gene51999:CDS |
| GTTGGTTGTTTCGTTAGGGT+TGG | 0.442169 | 3.3:+6365865 | MS.gene51999:CDS |
| TCGTTAGGGTTGGTATTGGC+AGG | 0.445479 | 3.3:+6365875 | MS.gene51999:CDS |
| GCATTGAAAGCAGGGGAGGC+AGG | 0.447530 | 3.3:+6366474 | MS.gene51999:CDS |
| GTTAATAAAGCATTGAAAGC+AGG | 0.455533 | 3.3:+6366465 | MS.gene51999:CDS |
| TGGAGGAATCCCGGAAATCT+CGG | 0.458345 | 3.3:+6366355 | MS.gene51999:CDS |
| CAAAGACTGGGCCTATCTAC+AGG | 0.458836 | 3.3:+6365899 | MS.gene51999:CDS |
| CCGGCTGAAGAGGCTGCAGC+TGG | 0.464826 | 3.3:+6366552 | MS.gene51999:CDS |
| CTCAGAAAGCCTCAGAGCCT+TGG | 0.470974 | 3.3:-6366388 | None:intergenic |
| GAACTACTATAATTCAAAAC+CGG | 0.473536 | 3.3:+6366533 | MS.gene51999:CDS |
| ATTTGAAAAGCCATCGTTTG+AGG | 0.474055 | 3.3:+6365768 | MS.gene51999:CDS |
| GCAAAAGTTTGGTGGAGCGC+AGG | 0.478459 | 3.3:+6366767 | MS.gene51999:CDS |
| GATTGTTGGTTGTTTCGTTA+GGG | 0.478505 | 3.3:+6365861 | MS.gene51999:CDS |
| GTGGGTGATGGAGGCTGCAA+TGG | 0.479445 | 3.3:+6366597 | MS.gene51999:CDS |
| GCCTATCTACAGGCTCTGTA+TGG | 0.481256 | 3.3:+6365909 | MS.gene51999:CDS |
| AGCAGCAGCTTCCAAAGCCT+CGG | 0.484282 | 3.3:-6366646 | None:intergenic |
| GGTATTGGCAGGTCAAAGAC+TGG | 0.484693 | 3.3:+6365886 | MS.gene51999:CDS |
| CAAGGAGATGGACTAGATCA+AGG | 0.488397 | 3.3:+6366511 | MS.gene51999:CDS |
| CAAGTACTTGAATGTTGTCT+GGG | 0.495702 | 3.3:+6365993 | MS.gene51999:CDS |
| GGCTGCAATGGGATTGGAGC+TGG | 0.501509 | 3.3:+6366609 | MS.gene51999:CDS |
| AACATTCAAGTACTTGTATG+TGG | 0.501552 | 3.3:-6365986 | None:intergenic |
| GTTTAAACTCCTCCTCAAGC+GGG | 0.503277 | 3.3:-6366068 | None:intergenic |
| ACCATACAGAGCCTGTAGAT+AGG | 0.505421 | 3.3:-6365910 | None:intergenic |
| TGCAAGAATTGGAGGAATCC+CGG | 0.506961 | 3.3:+6366346 | MS.gene51999:CDS |
| AGCTTCCAAAGCCTCGGCAG+TGG | 0.512251 | 3.3:-6366640 | None:intergenic |
| TGCTGCTGGTGCTGGAAAGT+TGG | 0.516833 | 3.3:+6366662 | MS.gene51999:CDS |
| GACAAAACTGCAAGAATTGG+AGG | 0.524371 | 3.3:+6366338 | MS.gene51999:CDS |
| TGAGAAGGACCGGTTGAAAA+GGG | 0.526022 | 3.3:+6366263 | MS.gene51999:CDS |
| GGAGGAATCCCGGAAATCTC+GGG | 0.526557 | 3.3:+6366356 | MS.gene51999:CDS |
| TGGGTGATGGAGGCTGCAAT+GGG | 0.529895 | 3.3:+6366598 | MS.gene51999:CDS |
| TTAATAAAGCATTGAAAGCA+GGG | 0.529926 | 3.3:+6366466 | MS.gene51999:CDS |
| GGTGGTGCAGTGGGTGATGG+AGG | 0.534826 | 3.3:+6366588 | MS.gene51999:CDS |
| TAATTCAAAACCGGCTGAAG+AGG | 0.535280 | 3.3:+6366542 | MS.gene51999:CDS |
| TGTCTGGATCTTCTCTACTC+CGG | 0.540198 | 3.3:-6366319 | None:intergenic |
| ATGTTGCAGCTGAGAAGGAC+CGG | 0.542009 | 3.3:+6366253 | MS.gene51999:CDS |
| ACTAAATGTTGCAGCTGAGA+AGG | 0.543890 | 3.3:+6366248 | MS.gene51999:CDS |
| TGAGGAGGAGTTTAAACAGT+GGG | 0.546108 | 3.3:+6366074 | MS.gene51999:CDS |
| GAGCGCAGGGAGTTCAGGCA+GGG | 0.549229 | 3.3:+6366781 | MS.gene51999:CDS |
| ATCCCGGAAATCTCGGGAGA+AGG | 0.549427 | 3.3:+6366362 | MS.gene51999:CDS |
| TGGTATGACGGCCACTGCCG+AGG | 0.559819 | 3.3:+6366629 | MS.gene51999:CDS |
| AAGTAGAGCGAAGTGGTGGC+CGG | 0.562543 | 3.3:+6366103 | MS.gene51999:CDS |
| GGTGATTACAAGAGAAGAAG+AGG | 0.564356 | 3.3:+6366894 | MS.gene51999:CDS |
| CATCTAGCCTCTTCAGCATC+CGG | 0.564400 | 3.3:-6366122 | None:intergenic |
| GAAAGCAAGAACGATGCAGC+CGG | 0.567987 | 3.3:+6366300 | MS.gene51999:CDS |
| CATTTGCCACCTCGCAGCAG+AGG | 0.570644 | 3.3:-6366025 | None:intergenic |
| ACAAGAGCTCCAGTGGATGA+AGG | 0.572277 | 3.3:+6366690 | MS.gene51999:CDS |
| GTGGTGGCCGGATGCTGAAG+AGG | 0.573366 | 3.3:+6366115 | MS.gene51999:CDS |
| CAAAAGTTTGGTGGAGCGCA+GGG | 0.575970 | 3.3:+6366768 | MS.gene51999:CDS |
| GATGATGACAAGATAATGCC+TGG | 0.576356 | 3.3:+6365745 | None:intergenic |
| GCAATGTGGCAAAAGTTTGG+TGG | 0.581264 | 3.3:+6366759 | MS.gene51999:CDS |
| TGTTTAAACTCCTCCTCAAG+CGG | 0.589955 | 3.3:-6366069 | None:intergenic |
| ATCTCGGGAGAAGGACGCCA+AGG | 0.590489 | 3.3:+6366371 | MS.gene51999:CDS |
| AATACTTCTGGTGGTGCAGT+GGG | 0.597159 | 3.3:+6366579 | MS.gene51999:CDS |
| TAAAAGAAATCACCATTCCA+AGG | 0.599048 | 3.3:+6365794 | MS.gene51999:CDS |
| TGCGAGGTGGCAAATGGCCA+TGG | 0.599400 | 3.3:+6366032 | MS.gene51999:CDS |
| TGGGATTGGAGCTGGTATGA+CGG | 0.607971 | 3.3:+6366617 | MS.gene51999:CDS |
| TTTAAACTCCTCCTCAAGCG+GGG | 0.608619 | 3.3:-6366067 | None:intergenic |
| TAATACTTCTGGTGGTGCAG+TGG | 0.614229 | 3.3:+6366578 | MS.gene51999:CDS |
| GAGTCCCAGAAAACGATGGA+AGG | 0.614728 | 3.3:+6366847 | MS.gene51999:CDS |
| GGTAGACACAAGAGCTCCAG+TGG | 0.616107 | 3.3:+6366683 | MS.gene51999:CDS |
| AGAAGGACGCCAAGGCTCTG+AGG | 0.617944 | 3.3:+6366379 | MS.gene51999:CDS |
| GCTGAAGAGGCTAGATGTGG+TGG | 0.622446 | 3.3:+6366128 | MS.gene51999:CDS |
| TAAAGCATTGAAAGCAGGGG+AGG | 0.625312 | 3.3:+6366470 | MS.gene51999:CDS |
| GTATTGGCAGGTCAAAGACT+GGG | 0.637870 | 3.3:+6365887 | MS.gene51999:CDS |
| CATCAGCTGACATTAACAGT+TGG | 0.642633 | 3.3:+6366873 | MS.gene51999:CDS |
| ATGAGACCTCTGCTGCGAGG+TGG | 0.647938 | 3.3:+6366019 | MS.gene51999:CDS |
| TAATAAAGCATTGAAAGCAG+GGG | 0.659215 | 3.3:+6366467 | MS.gene51999:CDS |
| ATACAGTCGATTAGGATCCG+AGG | 0.660349 | 3.3:-6365947 | None:intergenic |
| GTGATTACAAGAGAAGAAGA+GGG | 0.663120 | 3.3:+6366895 | MS.gene51999:CDS |
| AAGGAAGTAGAGCGAAGTGG+TGG | 0.663190 | 3.3:+6366099 | MS.gene51999:CDS |
| TTAAACTCCTCCTCAAGCGG+GGG | 0.674132 | 3.3:-6366066 | None:intergenic |
| GTTAAGGAAGTAGAGCGAAG+TGG | 0.674298 | 3.3:+6366096 | MS.gene51999:CDS |
| TTTCGAGTCCCAGAAAACGA+TGG | 0.687907 | 3.3:+6366843 | MS.gene51999:CDS |
| AAGTACTTGAATGTTGTCTG+GGG | 0.689030 | 3.3:+6365994 | MS.gene51999:CDS |
| TTGAGGAGGAGTTTAAACAG+TGG | 0.689149 | 3.3:+6366073 | MS.gene51999:CDS |
| TGCCAATATCGCTAGCAATG+TGG | 0.691084 | 3.3:+6366745 | MS.gene51999:CDS |
| GCTGGAAATAATACTTCTGG+TGG | 0.697224 | 3.3:+6366570 | MS.gene51999:CDS |
| TTCTAACATCTGCTTCACGG+TGG | 0.711073 | 3.3:-6366199 | None:intergenic |
| GATGCTGAAGAGGCTAGATG+TGG | 0.716515 | 3.3:+6366125 | MS.gene51999:CDS |
| GAAATGAGACCTCTGCTGCG+AGG | 0.717415 | 3.3:+6366016 | MS.gene51999:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTACAAAATGGTTTA+TGG | + | chr3.3:6365819-6365838 | MS.gene51999:CDS | 20.0% |
| ! | GAACTACTATAATTCAAAAC+CGG | + | chr3.3:6366533-6366552 | MS.gene51999:CDS | 25.0% |
| ! | TCTAATTTATACAGTCGATT+AGG | - | chr3.3:6365958-6365977 | None:intergenic | 25.0% |
| !!! | TTAATAAAGCATTGAAAGCA+GGG | + | chr3.3:6366466-6366485 | MS.gene51999:CDS | 25.0% |
| AACAATCAACTCCTCAAAAA+AGG | - | chr3.3:6365848-6365867 | None:intergenic | 30.0% | |
| AACATTCAAGTACTTGTATG+TGG | - | chr3.3:6365989-6366008 | None:intergenic | 30.0% | |
| AAGAGAAAAAATCTATCTCG+CGG | + | chr3.3:6366220-6366239 | MS.gene51999:CDS | 30.0% | |
| ACAATCAACTCCTCAAAAAA+GGG | - | chr3.3:6365847-6365866 | None:intergenic | 30.0% | |
| CAAGGTCAAAACTTACAAAA+TGG | + | chr3.3:6365812-6365831 | MS.gene51999:CDS | 30.0% | |
| TAAAAGAAATCACCATTCCA+AGG | + | chr3.3:6365794-6365813 | MS.gene51999:CDS | 30.0% | |
| ! | GCTTTCAATGCTTTATTAAC+TGG | - | chr3.3:6366465-6366484 | None:intergenic | 30.0% |
| !! | CATTTTGTAAGTTTTGACCT+TGG | - | chr3.3:6365814-6365833 | None:intergenic | 30.0% |
| !! | GTTAATAAAGCATTGAAAGC+AGG | + | chr3.3:6366465-6366484 | MS.gene51999:CDS | 30.0% |
| !! | TAATAAAGCATTGAAAGCAG+GGG | + | chr3.3:6366467-6366486 | MS.gene51999:CDS | 30.0% |
| !!! | TTTTTTGAGGAGTTGATTGT+TGG | + | chr3.3:6365847-6365866 | MS.gene51999:CDS | 30.0% |
| AAGTACTTGAATGTTGTCTG+GGG | + | chr3.3:6365994-6366013 | MS.gene51999:CDS | 35.0% | |
| ACAAGTACTTGAATGTTGTC+TGG | + | chr3.3:6365992-6366011 | MS.gene51999:CDS | 35.0% | |
| ATTTGAAAAGCCATCGTTTG+AGG | + | chr3.3:6365768-6365787 | MS.gene51999:CDS | 35.0% | |
| CAAGTACTTGAATGTTGTCT+GGG | + | chr3.3:6365993-6366012 | MS.gene51999:CDS | 35.0% | |
| CAGAGAATTGAAGAAGTTGT+TGG | + | chr3.3:6366819-6366838 | MS.gene51999:CDS | 35.0% | |
| GTGATTACAAGAGAAGAAGA+GGG | + | chr3.3:6366895-6366914 | MS.gene51999:CDS | 35.0% | |
| ! | GATTGTTGGTTGTTTCGTTA+GGG | + | chr3.3:6365861-6365880 | MS.gene51999:CDS | 35.0% |
| ! | TCTTTTATGTCCTCAAACGA+TGG | - | chr3.3:6365781-6365800 | None:intergenic | 35.0% |
| ! | TGATTGTTGGTTGTTTCGTT+AGG | + | chr3.3:6365860-6365879 | MS.gene51999:CDS | 35.0% |
| ! | TTTCCAATTCCCTTTTCAAC+CGG | - | chr3.3:6366275-6366294 | None:intergenic | 35.0% |
| !! | CAGGTTATGATCCTTTTTCA+AGG | + | chr3.3:6366493-6366512 | MS.gene51999:CDS | 35.0% |
| !! | TGTAAGTTTTGACCTTGGAA+TGG | - | chr3.3:6365809-6365828 | None:intergenic | 35.0% |
| !!! | ATGATCCTTTTTCAAGGAGA+TGG | + | chr3.3:6366499-6366518 | MS.gene51999:CDS | 35.0% |
| ACTAAATGTTGCAGCTGAGA+AGG | + | chr3.3:6366248-6366267 | MS.gene51999:CDS | 40.0% | |
| AGAAAAAATCTATCTCGCGG+AGG | + | chr3.3:6366223-6366242 | MS.gene51999:CDS | 40.0% | |
| CATCAGCTGACATTAACAGT+TGG | + | chr3.3:6366873-6366892 | MS.gene51999:CDS | 40.0% | |
| CCAGACAAAACTGCAAGAAT+TGG | + | chr3.3:6366335-6366354 | MS.gene51999:CDS | 40.0% | |
| CTAGCAATGTGGCAAAAGTT+TGG | + | chr3.3:6366756-6366775 | MS.gene51999:CDS | 40.0% | |
| CTAGTCCATCTCCTTGAAAA+AGG | - | chr3.3:6366507-6366526 | None:intergenic | 40.0% | |
| CTCTTCTAACATCTGCTTCA+CGG | - | chr3.3:6366205-6366224 | None:intergenic | 40.0% | |
| CTGAGATGAACAGAAAGAAC+AGG | + | chr3.3:6366406-6366425 | MS.gene51999:CDS | 40.0% | |
| GACAAAACTGCAAGAATTGG+AGG | + | chr3.3:6366338-6366357 | MS.gene51999:CDS | 40.0% | |
| GCAGCTGGAAATAATACTTC+TGG | + | chr3.3:6366567-6366586 | MS.gene51999:CDS | 40.0% | |
| GCTGGAAATAATACTTCTGG+TGG | + | chr3.3:6366570-6366589 | MS.gene51999:CDS | 40.0% | |
| GGTGAAAAATGTTGATGCCT+CGG | + | chr3.3:6365930-6365949 | MS.gene51999:CDS | 40.0% | |
| GGTGATTACAAGAGAAGAAG+AGG | + | chr3.3:6366894-6366913 | MS.gene51999:CDS | 40.0% | |
| TAATTCAAAACCGGCTGAAG+AGG | + | chr3.3:6366542-6366561 | MS.gene51999:CDS | 40.0% | |
| TGAGGAGGAGTTTAAACAGT+GGG | + | chr3.3:6366074-6366093 | MS.gene51999:CDS | 40.0% | |
| TGTTTAAACTCCTCCTCAAG+CGG | - | chr3.3:6366072-6366091 | None:intergenic | 40.0% | |
| TTCTCAGCTGCAACATTTAG+TGG | - | chr3.3:6366249-6366268 | None:intergenic | 40.0% | |
| TTGAGGAGGAGTTTAAACAG+TGG | + | chr3.3:6366073-6366092 | MS.gene51999:CDS | 40.0% | |
| ! | AACGATGGCTTTTCAAATCC+AGG | - | chr3.3:6365766-6365785 | None:intergenic | 40.0% |
| !! | CCAATTCTTGCAGTTTTGTC+TGG | - | chr3.3:6366338-6366357 | None:intergenic | 40.0% |
| !! | GGAGTTTAAACAGTGGGTTA+AGG | + | chr3.3:6366080-6366099 | MS.gene51999:CDS | 40.0% |
| !! | TGTTTCGTTAGGGTTGGTAT+TGG | + | chr3.3:6365871-6365890 | MS.gene51999:CDS | 40.0% |
| !!! | GTTTATGGAGCCCTTTTTTG+AGG | + | chr3.3:6365834-6365853 | MS.gene51999:CDS | 40.0% |
| ACCATACAGAGCCTGTAGAT+AGG | - | chr3.3:6365913-6365932 | None:intergenic | 45.0% | |
| ATACAGTCGATTAGGATCCG+AGG | - | chr3.3:6365950-6365969 | None:intergenic | 45.0% | |
| GCAATGTGGCAAAAGTTTGG+TGG | + | chr3.3:6366759-6366778 | MS.gene51999:CDS | 45.0% | |
| GTTAAGGAAGTAGAGCGAAG+TGG | + | chr3.3:6366096-6366115 | MS.gene51999:CDS | 45.0% | |
| GTTTAAACTCCTCCTCAAGC+GGG | - | chr3.3:6366071-6366090 | None:intergenic | 45.0% | |
| TGAGAAGGACCGGTTGAAAA+GGG | + | chr3.3:6366263-6366282 | MS.gene51999:CDS | 45.0% | |
| TGCAAGAATTGGAGGAATCC+CGG | + | chr3.3:6366346-6366365 | MS.gene51999:CDS | 45.0% | |
| TGCCAATATCGCTAGCAATG+TGG | + | chr3.3:6366745-6366764 | MS.gene51999:CDS | 45.0% | |
| TGCCACATTGCTAGCGATAT+TGG | - | chr3.3:6366750-6366769 | None:intergenic | 45.0% | |
| TGTCTGGATCTTCTCTACTC+CGG | - | chr3.3:6366322-6366341 | None:intergenic | 45.0% | |
| TTCTAACATCTGCTTCACGG+TGG | - | chr3.3:6366202-6366221 | None:intergenic | 45.0% | |
| TTTAAACTCCTCCTCAAGCG+GGG | - | chr3.3:6366070-6366089 | None:intergenic | 45.0% | |
| ! | AATACTTCTGGTGGTGCAGT+GGG | + | chr3.3:6366579-6366598 | MS.gene51999:CDS | 45.0% |
| ! | GACTCCTTCCATCGTTTTCT+GGG | - | chr3.3:6366854-6366873 | None:intergenic | 45.0% |
| ! | GTATTGGCAGGTCAAAGACT+GGG | + | chr3.3:6365887-6365906 | MS.gene51999:CDS | 45.0% |
| ! | GTTGGTTGTTTCGTTAGGGT+TGG | + | chr3.3:6365865-6365884 | MS.gene51999:CDS | 45.0% |
| ! | TAATACTTCTGGTGGTGCAG+TGG | + | chr3.3:6366578-6366597 | MS.gene51999:CDS | 45.0% |
| ! | TGACTCCTTCCATCGTTTTC+TGG | - | chr3.3:6366855-6366874 | None:intergenic | 45.0% |
| ! | TTTCGAGTCCCAGAAAACGA+TGG | + | chr3.3:6366843-6366862 | MS.gene51999:CDS | 45.0% |
| !! | CAAGGAGATGGACTAGATCA+AGG | + | chr3.3:6366511-6366530 | MS.gene51999:CDS | 45.0% |
| !! | TAAAGCATTGAAAGCAGGGG+AGG | + | chr3.3:6366470-6366489 | MS.gene51999:CDS | 45.0% |
| AAGGAAGTAGAGCGAAGTGG+TGG | + | chr3.3:6366099-6366118 | MS.gene51999:CDS | 50.0% | |
| ACAAGAGCTCCAGTGGATGA+AGG | + | chr3.3:6366690-6366709 | MS.gene51999:CDS | 50.0% | |
| ATGTTGCAGCTGAGAAGGAC+CGG | + | chr3.3:6366253-6366272 | MS.gene51999:CDS | 50.0% | |
| CAAAGACTGGGCCTATCTAC+AGG | + | chr3.3:6365899-6365918 | MS.gene51999:CDS | 50.0% | |
| CATCTAGCCTCTTCAGCATC+CGG | - | chr3.3:6366125-6366144 | None:intergenic | 50.0% | |
| CTGAGAAGGACCGGTTGAAA+AGG | + | chr3.3:6366262-6366281 | MS.gene51999:CDS | 50.0% | |
| GAAAGCAAGAACGATGCAGC+CGG | + | chr3.3:6366300-6366319 | MS.gene51999:CDS | 50.0% | |
| GACTCTGTTCCTTCATCCAC+TGG | - | chr3.3:6366702-6366721 | None:intergenic | 50.0% | |
| GAGTCCCAGAAAACGATGGA+AGG | + | chr3.3:6366847-6366866 | MS.gene51999:CDS | 50.0% | |
| GATGCTGAAGAGGCTAGATG+TGG | + | chr3.3:6366125-6366144 | MS.gene51999:CDS | 50.0% | |
| GCCTATCTACAGGCTCTGTA+TGG | + | chr3.3:6365909-6365928 | MS.gene51999:CDS | 50.0% | |
| GGACCGGTTGAAAAGGGAAT+TGG | + | chr3.3:6366269-6366288 | MS.gene51999:CDS | 50.0% | |
| TGGAGGAATCCCGGAAATCT+CGG | + | chr3.3:6366355-6366374 | MS.gene51999:CDS | 50.0% | |
| TGGGATTGGAGCTGGTATGA+CGG | + | chr3.3:6366617-6366636 | MS.gene51999:CDS | 50.0% | |
| TTAAACTCCTCCTCAAGCGG+GGG | - | chr3.3:6366069-6366088 | None:intergenic | 50.0% | |
| ! | CAAAAGTTTGGTGGAGCGCA+GGG | + | chr3.3:6366768-6366787 | MS.gene51999:CDS | 50.0% |
| !! | GGTATTGGCAGGTCAAAGAC+TGG | + | chr3.3:6365886-6365905 | MS.gene51999:CDS | 50.0% |
| !! | TCGTTAGGGTTGGTATTGGC+AGG | + | chr3.3:6365875-6365894 | MS.gene51999:CDS | 50.0% |
| AAGTAGAGCGAAGTGGTGGC+CGG | + | chr3.3:6366103-6366122 | MS.gene51999:CDS | 55.0% | |
| AGCAGCAGCTTCCAAAGCCT+CGG | - | chr3.3:6366649-6366668 | None:intergenic | 55.0% | |
| ATCCCGGAAATCTCGGGAGA+AGG | + | chr3.3:6366362-6366381 | MS.gene51999:CDS | 55.0% | |
| CGTCCTTCTCCCGAGATTTC+CGG | - | chr3.3:6366368-6366387 | None:intergenic | 55.0% | |
| CTCAGAAAGCCTCAGAGCCT+TGG | - | chr3.3:6366391-6366410 | None:intergenic | 55.0% | |
| GAAATGAGACCTCTGCTGCG+AGG | + | chr3.3:6366016-6366035 | MS.gene51999:CDS | 55.0% | |
| GATGGAGGCTGCAATGGGAT+TGG | + | chr3.3:6366603-6366622 | MS.gene51999:CDS | 55.0% | |
| GCTGAAGAGGCTAGATGTGG+TGG | + | chr3.3:6366128-6366147 | MS.gene51999:CDS | 55.0% | |
| GGAGGAATCCCGGAAATCTC+GGG | + | chr3.3:6366356-6366375 | MS.gene51999:CDS | 55.0% | |
| GGGAGTTCAGGCAGGGTTTA+TGG | + | chr3.3:6366788-6366807 | MS.gene51999:CDS | 55.0% | |
| GGTAGACACAAGAGCTCCAG+TGG | + | chr3.3:6366683-6366702 | MS.gene51999:CDS | 55.0% | |
| GTCCTTCTCCCGAGATTTCC+GGG | - | chr3.3:6366367-6366386 | None:intergenic | 55.0% | |
| ! | GCAAAAGTTTGGTGGAGCGC+AGG | + | chr3.3:6366767-6366786 | MS.gene51999:CDS | 55.0% |
| ! | TGCTGCTGGTGCTGGAAAGT+TGG | + | chr3.3:6366662-6366681 | MS.gene51999:CDS | 55.0% |
| !! | TGGGTGATGGAGGCTGCAAT+GGG | + | chr3.3:6366598-6366617 | MS.gene51999:CDS | 55.0% |
| AGAAGGACGCCAAGGCTCTG+AGG | + | chr3.3:6366379-6366398 | MS.gene51999:CDS | 60.0% | |
| AGCTTCCAAAGCCTCGGCAG+TGG | - | chr3.3:6366643-6366662 | None:intergenic | 60.0% | |
| ATCTCGGGAGAAGGACGCCA+AGG | + | chr3.3:6366371-6366390 | MS.gene51999:CDS | 60.0% | |
| ATGAGACCTCTGCTGCGAGG+TGG | + | chr3.3:6366019-6366038 | MS.gene51999:CDS | 60.0% | |
| CATTTGCCACCTCGCAGCAG+AGG | - | chr3.3:6366028-6366047 | None:intergenic | 60.0% | |
| CGGGGGAGAATCGCTAACCA+TGG | - | chr3.3:6366052-6366071 | None:intergenic | 60.0% | |
| CTCTGCTGCGAGGTGGCAAA+TGG | + | chr3.3:6366026-6366045 | MS.gene51999:CDS | 60.0% | |
| GCATTGAAAGCAGGGGAGGC+AGG | + | chr3.3:6366474-6366493 | MS.gene51999:CDS | 60.0% | |
| GGCTGCAATGGGATTGGAGC+TGG | + | chr3.3:6366609-6366628 | MS.gene51999:CDS | 60.0% | |
| TAGCGATTCTCCCCCGCTTG+AGG | + | chr3.3:6366056-6366075 | MS.gene51999:CDS | 60.0% | |
| TGCGAGGTGGCAAATGGCCA+TGG | + | chr3.3:6366032-6366051 | MS.gene51999:CDS | 60.0% | |
| TTGGAAGCTGCTGCTGGTGC+TGG | + | chr3.3:6366654-6366673 | MS.gene51999:CDS | 60.0% | |
| ! | TCTGGTGGTGCAGTGGGTGA+TGG | + | chr3.3:6366585-6366604 | MS.gene51999:CDS | 60.0% |
| !! | GAGGCTTTGGAAGCTGCTGC+TGG | + | chr3.3:6366648-6366667 | MS.gene51999:CDS | 60.0% |
| !! | GTGGGTGATGGAGGCTGCAA+TGG | + | chr3.3:6366597-6366616 | MS.gene51999:CDS | 60.0% |
| CCAGCTGCAGCCTCTTCAGC+CGG | - | chr3.3:6366555-6366574 | None:intergenic | 65.0% | |
| CGATTCTCCCCCGCTTGAGG+AGG | + | chr3.3:6366059-6366078 | MS.gene51999:CDS | 65.0% | |
| GAGCGCAGGGAGTTCAGGCA+GGG | + | chr3.3:6366781-6366800 | MS.gene51999:CDS | 65.0% | |
| GTGGTGGCCGGATGCTGAAG+AGG | + | chr3.3:6366115-6366134 | MS.gene51999:CDS | 65.0% | |
| TGGTATGACGGCCACTGCCG+AGG | + | chr3.3:6366629-6366648 | MS.gene51999:CDS | 65.0% | |
| TGGTGGAGCGCAGGGAGTTC+AGG | + | chr3.3:6366776-6366795 | MS.gene51999:CDS | 65.0% | |
| ! | GGTGGTGCAGTGGGTGATGG+AGG | + | chr3.3:6366588-6366607 | MS.gene51999:CDS | 65.0% |
| CCGGCTGAAGAGGCTGCAGC+TGG | + | chr3.3:6366552-6366571 | MS.gene51999:CDS | 70.0% | |
| GACGGCCACTGCCGAGGCTT+TGG | + | chr3.3:6366635-6366654 | MS.gene51999:CDS | 70.0% | |
| GGAGCGCAGGGAGTTCAGGC+AGG | + | chr3.3:6366780-6366799 | MS.gene51999:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 6365760 | 6366926 | 6365760 | ID=MS.gene51999 |
| chr3.3 | mRNA | 6365760 | 6366926 | 6365760 | ID=MS.gene51999.t1;Parent=MS.gene51999 |
| chr3.3 | exon | 6365760 | 6366926 | 6365760 | ID=MS.gene51999.t1.exon1;Parent=MS.gene51999.t1 |
| chr3.3 | CDS | 6365760 | 6366926 | 6365760 | ID=cds.MS.gene51999.t1;Parent=MS.gene51999.t1 |
| Gene Sequence |
| Protein sequence |
